CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035924	Mycobacteroides abscessus subsp. massiliense strain GD01B chromosome, complete genome	0 crisprs	DEDDh,csa3,cas3,DinG,cas4,WYL	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22471 : 59614

Gordonia_phage(33.33%)

integrase,transposase

attL 21700:21716|attR 42849:42865

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
21700:21716	attL	NA	NA	NA	NA
QBE85072.1\|22471_23860_+\|integrase	integrase	NA	NA	NA	NA
QBE85073.1\|24531_25551_+	hypothetical protein	NA	NA	NA	NA
QBE85074.1\|25676_27635_+	hypothetical protein	NA	NA	NA	NA
QBE80704.1\|27627_28053_+	hypothetical protein	NA	NA	NA	NA
QBE80705.1\|28240_29272_-	AraC family transcriptional regulator	NA	NA	NA	NA
QBE80706.1\|29419_29695_+	hypothetical protein	NA	NA	NA	NA
QBE85075.1\|29815_31222_+	DUF1254 domain-containing protein	M1IA53	Paramecium_bursaria_Chlorella_virus	1.3e-80	39.7
QBE80707.1\|31363_33739_+	arylsulfatase	NA	NA	NA	NA
QBE80708.1\|34072_35047_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
QBE80709.1\|35057_35531_-	HIT family protein	NA	NA	NA	NA
QBE80710.1\|35855_36299_+	hypothetical protein	NA	NA	NA	NA
QBE85076.1\|36718_38635_-\|integrase	site-specific integrase	NA	NA	NA	NA
QBE80711.1\|38726_39836_-\|transposase	transposase	NA	NA	NA	NA
QBE80712.1\|39832_40546_-	hypothetical protein	NA	NA	NA	NA
QBE80713.1\|40817_41915_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	5.9e-28	31.4
QBE80714.1\|41943_42348_+	hypothetical protein	NA	NA	NA	NA
QBE80715.1\|42417_42627_-	hypothetical protein	NA	NA	NA	NA
QBE80716.1\|42657_44598_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	6.2e-65	33.4
42849:42865	attR	NA	NA	NA	NA
QBE80717.1\|44793_46101_-	MFS transporter	NA	NA	NA	NA
QBE80718.1\|46052_47153_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
QBE80719.1\|47264_47714_-	hypothetical protein	NA	NA	NA	NA
QBE80720.1\|47784_48321_-	hypothetical protein	NA	NA	NA	NA
QBE80721.1\|48365_48572_-	copper chaperone	NA	NA	NA	NA
QBE80722.1\|48758_49247_+	hypothetical protein	NA	NA	NA	NA
QBE80723.1\|49341_49641_+	hypothetical protein	NA	NA	NA	NA
QBE80724.1\|49808_50210_+	hypothetical protein	NA	NA	NA	NA
QBE80725.1\|50688_50949_+	XRE family transcriptional regulator	NA	NA	NA	NA
QBE80726.1\|51117_52083_+	hypothetical protein	NA	NA	NA	NA
QBE80727.1\|52141_53338_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	8.4e-20	30.0
QBE80728.1\|53360_54569_+\|transposase	transposase	H7BW99	unidentified_phage	2.0e-05	28.6
QBE85077.1\|54555_56787_+\|transposase	transposase	NA	NA	NA	NA
QBE80729.1\|56779_57208_+	hypothetical protein	NA	NA	NA	NA
QBE80730.1\|57311_57491_+	hypothetical protein	NA	NA	NA	NA
QBE80731.1\|57563_58808_+\|transposase	IS21 family transposase	NA	NA	NA	NA
QBE80732.1\|58807_59614_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	2.7e-54	44.2

DBSCAN-SWA_2

453308 : 480181

Staphylococcus_phage(25.0%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE81084.1\|453308_454574_+\|protease	acid resistance serine protease MarP	NA	NA	NA	NA
QBE81085.1\|454547_455510_-	alpha/beta hydrolase	NA	NA	NA	NA
QBE81086.1\|455542_456064_-\|holin	phage holin family protein	NA	NA	NA	NA
QBE85104.1\|456313_457009_+\|protease	serine protease	NA	NA	NA	NA
QBE81087.1\|457098_459075_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	5.9e-79	37.3
QBE81088.1\|459258_460878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
QBE81089.1\|460874_461846_+	ABC transporter permease	NA	NA	NA	NA
QBE81090.1\|461838_462753_+	ABC transporter permease	NA	NA	NA	NA
QBE81091.1\|462753_464403_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-21	32.8
QBE81092.1\|464427_465171_+	oxidoreductase	NA	NA	NA	NA
QBE81093.1\|465586_466468_-	HAD-IB family hydrolase	NA	NA	NA	NA
QBE81094.1\|466851_467925_+	helicase	NA	NA	NA	NA
QBE81095.1\|467921_468983_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
QBE81096.1\|469315_469693_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QBE81097.1\|469689_471672_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.8e-104	39.8
QBE81098.1\|471746_472010_-	alkylmercury lyase	NA	NA	NA	NA
QBE85105.1\|472413_473001_+	DUF1942 domain-containing protein	NA	NA	NA	NA
QBE85106.1\|473345_473732_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
QBE81099.1\|473728_474673_+	M56 family peptidase	NA	NA	NA	NA
QBE81100.1\|475122_475929_-\|transposase	transposase	U5N3V8	Enterobacteria_phage	2.7e-54	44.2
QBE81101.1\|475928_477173_-\|transposase	IS21 family transposase	NA	NA	NA	NA
QBE81102.1\|477245_477425_-	hypothetical protein	NA	NA	NA	NA
QBE81103.1\|477528_477957_-	hypothetical protein	NA	NA	NA	NA
QBE85107.1\|477949_480181_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2532682 : 2542997

Leptospira_phage(100.0%)

integrase,transposase

attL 2522243:2522258|attR 2547329:2547344

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2522243:2522258	attL	NA	NA	NA	NA
QBE82951.1\|2532682_2533720_-\|transposase	transposase	NA	NA	NA	NA
QBE82952.1\|2533722_2535774_-\|integrase	integrase	NA	NA	NA	NA
QBE82953.1\|2535770_2536526_-\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
QBE82954.1\|2537119_2538241_+\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	2.3e-11	21.0
QBE82955.1\|2538233_2538599_+	XRE family transcriptional regulator	NA	NA	NA	NA
QBE82956.1\|2538576_2540034_+	Fis family transcriptional regulator	NA	NA	NA	NA
QBE82957.1\|2540110_2540335_-	hypothetical protein	NA	NA	NA	NA
QBE82958.1\|2540410_2541673_+\|transposase	IS256 family transposase	NA	NA	NA	NA
QBE82959.1\|2541752_2542997_+\|transposase	IS21 family transposase	NA	NA	NA	NA
2547329:2547344	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2829334 : 2837893

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE83219.1\|2829334_2830006_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1
QBE83220.1\|2830119_2831043_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
QBE83221.1\|2831044_2831914_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	1.5e-55	46.0
QBE83222.1\|2832015_2834382_-	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
QBE83223.1\|2834412_2834946_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.1e-14	36.4
QBE83224.1\|2834942_2836619_-	hypothetical protein	NA	NA	NA	NA
QBE83225.1\|2836618_2837893_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6

DBSCAN-SWA_5

4097822 : 4107321

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE84369.1\|4097822_4098947_-	acyltransferase	A9YX16	Burkholderia_phage	2.7e-20	28.7
QBE84370.1\|4098943_4100212_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
QBE84371.1\|4100261_4101068_-	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
QBE84372.1\|4101278_4101971_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	3.7e-12	30.2
QBE84373.1\|4102203_4103337_-	acyltransferase	A9YX16	Burkholderia_phage	7.0e-16	26.2
QBE84374.1\|4103504_4104566_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	1.6e-17	25.8
QBE84375.1\|4104729_4106052_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	2.2e-05	39.2
QBE84376.1\|4106131_4106431_-	hypothetical protein	NA	NA	NA	NA
QBE84377.1\|4106454_4107321_+	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	2.8e-89	57.5

DBSCAN-SWA_6

4795316 : 4803688

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBE84984.1\|4795316_4796786_+	class A beta-lactamase-related serine hydrolase	A0A1J0GRK9	Mycobacterium_phage	4.2e-13	28.8
QBE84985.1\|4796913_4797726_+	DUF1906 domain-containing protein	A0A2D1GEF2	Gordonia_phage	3.1e-50	49.1
QBE84986.1\|4797774_4798971_-	LysM peptidoglycan-binding domain-containing protein	A0A1W6JL93	Lactococcus_phage	2.6e-05	47.3
QBE84987.1\|4799400_4800219_+	N-acetylmuramoyl-L-alanine amidase	A0A2D1GEV9	Mycobacterium_phage	3.3e-68	55.0
QBE84988.1\|4801009_4801459_+	hypothetical protein	NA	NA	NA	NA
QBE84989.1\|4801479_4802931_+	HAMP domain-containing histidine kinase	Q8QKV4	Ectocarpus_siliculosus_virus	2.9e-06	33.6
QBE84990.1\|4803010_4803688_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.4e-26	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage