CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP022306	Thalassococcus sp. S3 plasmid pS3C, complete sequence	0 crisprs	NA	0
CP022304	Thalassococcus sp. S3 plasmid pS3A, complete sequence	0 crisprs	NA	0
CP022303	Thalassococcus sp. S3 chromosome, complete genome	0 crisprs	WYL,csa3,cas3,DEDDh,RT	4
CP022305	Thalassococcus sp. S3 plasmid pS3B, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1958691 : 1987169

Rhodobacter_phage(40.74%)

transposase,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF31494.1\|1958691_1959621_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	4.9e-60	42.4
QBF31495.1\|1959621_1959810_-	hypothetical protein	NA	NA	NA	NA
QBF31496.1\|1959806_1960241_-	hypothetical protein	A0A1B0T6E9	Thiobacimonas_phage	6.1e-21	39.7
QBF31497.1\|1960240_1960669_-	hypothetical protein	A0A1B0T6F3	Thiobacimonas_phage	5.1e-28	50.7
QBF31498.1\|1960764_1961139_-	hypothetical protein	NA	NA	NA	NA
QBF31499.1\|1961150_1962047_-	hypothetical protein	M4SRT6	Rhodobacter_phage	5.9e-111	64.3
QBF31500.1\|1962059_1962497_-	hypothetical protein	M4ST95	Rhodobacter_phage	9.5e-38	54.6
QBF31501.1\|1962493_1963552_-	hypothetical protein	M4SNT6	Rhodobacter_phage	8.1e-59	42.8
QBF31502.1\|1963611_1963911_-	hypothetical protein	NA	NA	NA	NA
QBF31503.1\|1963927_1964443_-	hypothetical protein	M4ST99	Rhodobacter_phage	3.7e-33	46.7
QBF31504.1\|1964775_1966017_-\|head	phage head protein	M4SNU0	Rhodobacter_phage	1.1e-118	50.4
QBF31505.1\|1966009_1967692_-	hypothetical protein	A0A1B0T6F2	Thiobacimonas_phage	7.8e-173	56.2
QBF31506.1\|1967734_1967923_-	hypothetical protein	NA	NA	NA	NA
QBF31507.1\|1967984_1968236_-	hypothetical protein	A0A1B1IHZ5	Skeletonema_virus	1.9e-14	53.6
QBF31508.1\|1968391_1970062_-	hypothetical protein	M4SRU6	Rhodobacter_phage	1.6e-202	62.8
QBF31509.1\|1970288_1970483_-	hypothetical protein	NA	NA	NA	NA
QBF31510.1\|1970655_1970973_-	hypothetical protein	M4T564	Rhodobacter_phage	3.3e-24	57.6
QBF31511.1\|1970969_1971272_-	hypothetical protein	A0A1B1P715	Rhodovulum_phage	6.8e-11	37.6
QBF31512.1\|1971268_1971823_-	hypothetical protein	A0A1B0T6G0	Thiobacimonas_phage	1.8e-46	63.1
QBF31513.1\|1971822_1972128_-	hypothetical protein	NA	NA	NA	NA
QBF31514.1\|1972129_1972519_-	hypothetical protein	NA	NA	NA	NA
QBF31515.1\|1972518_1972932_-	hypothetical protein	NA	NA	NA	NA
QBF31516.1\|1972931_1973444_-	hypothetical protein	M4SRV1	Rhodobacter_phage	2.2e-30	44.5
QBF31517.1\|1973641_1974577_-	lysozyme	G8GWD3	Rhodobacter_phage	7.7e-61	45.0
QBF31518.1\|1974669_1975092_-	hypothetical protein	NA	NA	NA	NA
QBF31519.1\|1975088_1975343_-	hypothetical protein	A0A1B1P700	Rhodovulum_phage	4.4e-11	43.0
QBF31520.1\|1975339_1975600_-	hypothetical protein	NA	NA	NA	NA
QBF31521.1\|1975596_1976061_-	GemA protein	A0A1B0T6H1	Thiobacimonas_phage	6.5e-45	60.1
QBF31522.1\|1976057_1976309_-	hypothetical protein	NA	NA	NA	NA
QBF31523.1\|1976652_1976976_-	hypothetical protein	NA	NA	NA	NA
QBF31524.1\|1976948_1977341_-	hypothetical protein	NA	NA	NA	NA
QBF31525.1\|1977344_1977608_-	hypothetical protein	NA	NA	NA	NA
QBF31526.1\|1977619_1978261_-	HNH endonuclease	NA	NA	NA	NA
QBF31527.1\|1978257_1978497_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	8.6e-09	47.3
QBF31528.1\|1978493_1979150_-	hypothetical protein	M4STB6	Rhodobacter_phage	1.0e-72	62.4
QBF31529.1\|1979146_1979377_-	hypothetical protein	NA	NA	NA	NA
QBF31530.1\|1979373_1979553_-	hypothetical protein	NA	NA	NA	NA
QBF31531.1\|1979545_1979872_-	hypothetical protein	A0A1B1P6Z9	Rhodovulum_phage	5.4e-06	38.1
QBF31532.1\|1979868_1980195_-	hypothetical protein	NA	NA	NA	NA
QBF31533.1\|1980187_1980577_-	hypothetical protein	M4STC0	Rhodobacter_phage	2.1e-20	43.5
QBF31534.1\|1980573_1981119_-	hypothetical protein	A0A1B1P6Z8	Rhodovulum_phage	3.5e-13	31.3
QBF31535.1\|1981108_1981927_-	hypothetical protein	A0A0M4UT94	Ralstonia_phage	6.8e-21	34.4
QBF31536.1\|1981931_1984052_-\|transposase	transposase	A0A1B0T6N2	Pelagibaca_phage	2.1e-199	51.8
QBF31537.1\|1984044_1984938_-	chromosome partitioning protein ParB	A0A1B0T6H9	Thiobacimonas_phage	2.8e-36	36.6
QBF31538.1\|1984915_1985164_-	hypothetical protein	NA	NA	NA	NA
QBF31539.1\|1985163_1985475_-	hypothetical protein	NA	NA	NA	NA
QBF31540.1\|1985471_1986092_-	hypothetical protein	NA	NA	NA	NA
QBF31541.1\|1986266_1987169_+	hypothetical protein	A5X9F5	Aeromonas_virus	3.8e-17	30.1

DBSCAN-SWA_2

2624126 : 2651519

Emiliania_huxleyi_virus(26.67%)

terminase,head,capsid,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF32145.1\|2624126_2624534_-\|capsid	outer capsid protein Hoc	A0A142K640	Streptomyces_phage	5.4e-19	41.0
QBF32146.1\|2624536_2624941_-	hypothetical protein	NA	NA	NA	NA
QBF32147.1\|2624940_2625378_-	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	1.2e-11	29.9
QBF32148.1\|2625355_2625709_-\|head,tail	phage head-tail joining protein	NA	NA	NA	NA
QBF32149.1\|2625705_2625996_-	hypothetical protein	NA	NA	NA	NA
QBF32150.1\|2626051_2626642_-	hypothetical protein	NA	NA	NA	NA
QBF32151.1\|2626705_2628025_-\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	1.4e-44	32.0
QBF32152.1\|2628035_2628878_-	peptidase	A0A0U4B0J0	Pseudomonas_phage	5.1e-64	55.9
QBF32153.1\|2628874_2630098_-\|portal	phage portal protein	M4QP41	Tetraselmis_viridis_virus	1.3e-73	39.5
QBF32154.1\|2630094_2631813_-\|terminase	terminase	S4TSQ6	Salmonella_phage	1.8e-108	40.0
QBF32155.1\|2631819_2632308_-	hypothetical protein	NA	NA	NA	NA
QBF32156.1\|2632405_2632753_-	endonuclease	Q7Y5F7	Xanthomonas_virus	8.1e-08	35.6
QBF32157.1\|2632954_2633434_+	hypothetical protein	NA	NA	NA	NA
QBF32158.1\|2633742_2634516_-	hypothetical protein	NA	NA	NA	NA
QBF32159.1\|2634976_2636839_-	hypothetical protein	G8DGC0	Emiliania_huxleyi_virus	2.8e-139	45.0
QBF32160.1\|2636835_2637945_-	hypothetical protein	G8DGB8	Emiliania_huxleyi_virus	5.8e-92	49.1
QBF32161.1\|2637968_2638877_-	hypothetical protein	A0A1X9HWI4	Ruegeria_phage	1.0e-86	55.1
QBF32162.1\|2639210_2639471_-	hypothetical protein	NA	NA	NA	NA
QBF32163.1\|2639536_2639818_-	hypothetical protein	G8DH87	Emiliania_huxleyi_virus	1.6e-17	46.0
QBF32164.1\|2639841_2640189_+	hypothetical protein	G8DH86	Emiliania_huxleyi_virus	2.2e-29	63.8
QBF32165.1\|2640480_2640813_+	hypothetical protein	NA	NA	NA	NA
QBF32166.1\|2642025_2642307_+	hypothetical protein	NA	NA	NA	NA
QBF32167.1\|2642500_2643499_+	recombinase	NA	NA	NA	NA
QBF32168.1\|2643808_2645107_+	hypothetical protein	A0A0R6PGY7	Moraxella_phage	4.1e-28	28.9
QBF32169.1\|2645724_2646489_+	hypothetical protein	NA	NA	NA	NA
QBF32170.1\|2646976_2647633_+	hypothetical protein	NA	NA	NA	NA
QBF32171.1\|2647746_2649270_+	hypothetical protein	A0A2H4JDG5	uncultured_Caudovirales_phage	1.1e-05	22.5
QBF32172.1\|2649266_2649611_+	hypothetical protein	NA	NA	NA	NA
QBF32173.1\|2649610_2650255_+	hypothetical protein	V9QKS2	Rhizobium_phage	5.9e-20	31.9
QBF32174.1\|2650259_2651519_+\|capsid	phage major capsid protein	NA	NA	NA	NA

DBSCAN-SWA_3

2751578 : 2793687

Paracoccus_phage(21.43%)

tail,portal,integrase,capsid

attL 2784616:2784631|attR 2799837:2799852

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF32263.1\|2751578_2755499_-	host specificity protein	A0A0B5A7K5	Paracoccus_phage	3.3e-222	37.0
QBF32264.1\|2755498_2755942_-	peptidase	F4YXU4	Roseobacter_phage	4.2e-25	42.8
QBF32265.1\|2755941_2756829_-	hypothetical protein	A0A0K0PVK1	Roseobacter_phage	1.9e-61	40.8
QBF32266.1\|2756828_2757461_-	glycoside hydrolase family 24	A0A0B5A2K3	Paracoccus_phage	1.1e-55	48.6
QBF32267.1\|2757476_2758139_-\|tail	phage tail protein	C0LP53	Escherichia_virus	3.9e-11	30.3
QBF32268.1\|2758125_2758335_-	hypothetical protein	NA	NA	NA	NA
QBF32269.1\|2758331_2758658_-	hypothetical protein	NA	NA	NA	NA
QBF32270.1\|2758662_2759076_-\|tail	phage major tail protein, TP901-1 family	A0A1J0GVL1	Pseudoalteromonas_phage	3.1e-06	33.6
QBF32271.1\|2759093_2759516_-	hypothetical protein	NA	NA	NA	NA
QBF32272.1\|2759512_2759851_-\|tail	phage tail protein	NA	NA	NA	NA
QBF32273.1\|2759847_2760447_-	hypothetical protein	NA	NA	NA	NA
QBF32274.1\|2760616_2761798_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	2.6e-66	40.7
QBF32275.1\|2761834_2762380_-	peptidase U35	A0A0U2BX10	Paracoccus_phage	3.9e-33	50.3
QBF32276.1\|2762400_2762607_-	hypothetical protein	NA	NA	NA	NA
QBF32277.1\|2762599_2763778_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.4e-59	37.4
QBF32278.1\|2763966_2765193_-	ATP-binding protein	A0A0U4IJ26	Arthrobacter_phage	2.0e-72	40.9
QBF32279.1\|2765245_2765590_-	hypothetical protein	NA	NA	NA	NA
QBF32280.1\|2765853_2767014_-	branched-chain alpha-keto acid dehydrogenase subunit E2	NA	NA	NA	NA
QBF32281.1\|2767013_2768273_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA
QBF32282.1\|2768360_2769293_-	arginase	NA	NA	NA	NA
QBF32283.1\|2769340_2770084_-	1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase	NA	NA	NA	NA
QBF32284.1\|2770188_2770728_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QBF32285.1\|2770883_2771117_-	acyl carrier protein	I1TR04	Pseudomonas_phage	5.6e-05	45.6
QBF32286.1\|2771349_2772087_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
QBF32287.1\|2772096_2773035_-	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA
QBF32288.1\|2773188_2774409_+	cytochrome	A0A0U2QLA7	Escherichia_phage	7.0e-06	35.1
QBF32289.1\|2774476_2775052_-	hypothetical protein	NA	NA	NA	NA
QBF32290.1\|2775175_2775712_-	hypothetical protein	NA	NA	NA	NA
QBF32291.1\|2775918_2776272_+	30S ribosomal protein S6	NA	NA	NA	NA
QBF32292.1\|2776301_2776529_+	30S ribosomal protein S18	NA	NA	NA	NA
QBF32293.1\|2776540_2777179_+	50S ribosomal protein L9	NA	NA	NA	NA
QBF32294.1\|2777236_2777464_-	transcriptional regulator	A0A2K9V490	Faecalibacterium_phage	2.5e-05	36.4
QBF32295.1\|2777473_2777983_-	hypothetical protein	NA	NA	NA	NA
QBF32296.1\|2778186_2778537_+	glycine zipper family protein	NA	NA	NA	NA
QBF32297.1\|2778640_2779120_+	transglycosylase	NA	NA	NA	NA
QBF32298.1\|2779289_2780081_+	hemolysin-type calcium-binding protein	NA	NA	NA	NA
QBF32299.1\|2780198_2782157_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
QBF32300.1\|2782273_2783605_-	trigger factor	NA	NA	NA	NA
QBF32301.1\|2783705_2784344_-	TetR family transcriptional regulator	NA	NA	NA	NA
QBF32302.1\|2784434_2785577_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
2784616:2784631	attL	NA	NA	NA	NA
QBF32303.1\|2785578_2788710_+	acriflavin resistance protein	NA	NA	NA	NA
QBF32304.1\|2788766_2789798_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
QBF32305.1\|2791035_2791449_-	hypothetical protein	NA	NA	NA	NA
QBF32306.1\|2792838_2793687_+\|integrase	integrase	A0A1X9HVL9	Ruegeria_phage	1.8e-64	46.1
2799837:2799852	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4408517 : 4417442

uncultured_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF33819.1\|4408517_4409909_-	guanylate cyclase	A0A218MLZ2	uncultured_virus	2.4e-18	31.0
QBF33820.1\|4410049_4410457_-	hypothetical protein	NA	NA	NA	NA
QBF33821.1\|4410645_4411308_+	hypothetical protein	NA	NA	NA	NA
QBF33822.1\|4411547_4412648_-	modification methylase	A0A249XUJ2	Enterococcus_phage	7.4e-31	31.7
QBF33823.1\|4412735_4413386_-	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	1.5e-18	35.5
QBF33824.1\|4413375_4414950_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	1.6e-10	26.0
QBF33825.1\|4415253_4415919_+	C factor, cell signaling protein	Q56AQ6	Bacillus_thuringiensis_phage	7.4e-26	39.2
QBF33826.1\|4415912_4417442_+	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	3.1e-59	30.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage