CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP036187	Klebsiella pneumoniae strain BA1559 chromosome, complete genome	0 crisprs	cas3,WYL,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,RT	6
CP036188	Klebsiella pneumoniae strain BA1559 plasmid pIncFIBK, complete sequence	0 crisprs	csa3,RT	2
CP036189	Klebsiella pneumoniae strain BA1559 plasmid pCol440I	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2502899 : 2537520

Enterobacteria_phage(19.05%)

integrase,head,capsid,terminase,tail,protease,portal,holin

attL 2502726:2502785|attR 2542214:2542277

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2502726:2502785	attL	NA	NA	NA	NA
QBF96537.1\|2502899_2503892_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	4.9e-175	87.2
QBF96538.1\|2503893_2504121_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	2.4e-29	78.4
QBF96539.1\|2504153_2504432_-	hypothetical protein	K7PKM4	Enterobacterial_phage	3.0e-13	46.1
QBF96540.1\|2505027_2505255_-	hypothetical protein	NA	NA	NA	NA
QBF96541.1\|2505254_2505578_-	hypothetical protein	NA	NA	NA	NA
QBF96542.1\|2505684_2505945_-	DUF4752 family protein	T1S9K2	Salmonella_phage	2.4e-28	73.2
QBF96543.1\|2505941_2506454_-	hypothetical protein	NA	NA	NA	NA
QBF96544.1\|2506450_2507236_-	hypothetical protein	A4JX52	Burkholderia_virus	2.6e-62	51.0
QBF96545.1\|2507235_2507535_-	hypothetical protein	NA	NA	NA	NA
QBF99243.1\|2508081_2508729_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	9.3e-74	63.0
QBF96546.1\|2508833_2509031_+	hypothetical protein	H9C161	Pectobacterium_phage	2.7e-16	66.1
QBF96547.1\|2509056_2509518_+	hypothetical protein	K7PJS5	Enterobacterial_phage	3.8e-69	87.5
QBF96548.1\|2509755_2509968_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	6.4e-16	70.9
QBF96549.1\|2509924_2510839_+	transcriptional regulator	H2DE83	Erwinia_phage	2.4e-30	57.3
QBF96550.1\|2510835_2511645_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	6.5e-109	68.5
QBF96551.1\|2511654_2512032_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
QBF96552.1\|2512044_2513025_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.6e-133	66.6
QBF96553.1\|2513038_2513617_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
QBF96554.1\|2513768_2514008_+	hypothetical protein	NA	NA	NA	NA
QBF96555.1\|2514173_2514560_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	1.6e-57	90.6
QBF96556.1\|2514546_2514828_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	7.7e-17	46.2
QBF96557.1\|2514827_2515457_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	4.2e-87	75.4
QBF96558.1\|2515459_2515735_+	hypothetical protein	G8C7W1	Escherichia_phage	1.3e-24	70.8
QBF99244.1\|2515685_2515883_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	7.0e-25	90.2
QBF96559.1\|2515953_2516442_+	hypothetical protein	NA	NA	NA	NA
QBF96560.1\|2516528_2516912_+	hypothetical protein	Q6UAR9	Klebsiella_phage	5.2e-64	94.5
QBF96561.1\|2516978_2517215_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-31	94.9
QBF96562.1\|2517244_2517499_+	DUF551 domain-containing protein	NA	NA	NA	NA
QBF96563.1\|2517581_2517815_+	hypothetical protein	NA	NA	NA	NA
QBF96564.1\|2517802_2518153_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	3.2e-52	81.0
QBF96565.1\|2518805_2520563_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	91.1
QBF96566.1\|2520573_2520759_+	hypothetical protein	Q8HAD5	Salmonella_phage	6.2e-15	61.7
QBF96567.1\|2520758_2521988_+\|portal	phage portal protein	U5P411	Shigella_phage	8.2e-204	82.4
QBF99245.1\|2521974_2522628_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	7.1e-106	87.9
QBF96568.1\|2522642_2523851_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	2.2e-193	84.8
QBF96569.1\|2523889_2524093_+	hypothetical protein	M1FN89	Enterobacteria_phage	2.3e-07	42.4
QBF96570.1\|2524089_2524410_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.7e-15	39.8
QBF96571.1\|2524418_2524757_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.4e-41	74.1
QBF96572.1\|2524753_2525203_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	9.7e-62	81.9
QBF96573.1\|2525199_2525547_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	8.0e-32	62.8
QBF96574.1\|2525603_2526308_+\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	1.6e-79	66.5
QBF96575.1\|2526338_2526743_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
QBF96576.1\|2526745_2527051_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	8.1e-28	64.6
QBF96577.1\|2527124_2527358_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
QBF96578.1\|2527418_2530808_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.6e-302	57.7
QBF96579.1\|2530828_2531302_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-55	62.1
QBF96580.1\|2531288_2531765_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	4.8e-51	65.8
QBF96581.1\|2531777_2532158_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	5.3e-61	84.1
QBF96582.1\|2532154_2535232_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	62.0
QBF96583.1\|2535309_2537520_+	hypothetical protein	B5TAB2	Burkholderia_phage	3.7e-98	45.5
2542214:2542277	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3378640 : 3389527

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF97351.1\|3378640_3381748_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
QBF97352.1\|3381802_3383068_+	MFS transporter	NA	NA	NA	NA
QBF97353.1\|3383098_3384187_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	3.0e-210	99.7
QBF97354.1\|3384273_3384534_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
QBF99296.1\|3384831_3385692_+	class A beta-lactamase SHV-28	A0A077SL40	Escherichia_phage	1.7e-155	99.3
QBF97355.1\|3385712_3386474_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QBF97356.1\|3386734_3387637_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
QBF97357.1\|3387648_3388914_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.1e-232	99.3
QBF97358.1\|3388906_3389527_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

3681061 : 3725696

Klebsiella_phage(24.44%)

holin,integrase,tail,terminase

attL 3666967:3666982|attR 3723002:3723017

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3666967:3666982	attL	NA	NA	NA	NA
QBF97603.1\|3681061_3684136_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	96.8
QBF97604.1\|3684132_3684513_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.4e-69	94.4
QBF97605.1\|3684522_3685005_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.1e-82	96.2
QBF97606.1\|3685185_3685650_-	hypothetical protein	A0A286S298	Klebsiella_phage	3.0e-58	68.4
QBF97607.1\|3685649_3688550_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	5.2e-100	32.0
QBF99313.1\|3688641_3689115_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	4.6e-22	57.4
QBF97608.1\|3689228_3689426_-	hypothetical protein	NA	NA	NA	NA
QBF97609.1\|3689563_3690046_-	hypothetical protein	NA	NA	NA	NA
QBF97610.1\|3690099_3691272_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
QBF97611.1\|3691295_3691688_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
QBF97612.1\|3691684_3692236_-	hypothetical protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
QBF97613.1\|3692237_3692621_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
QBF97614.1\|3692607_3692841_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
QBF97615.1\|3692850_3693105_-	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
QBF97616.1\|3693106_3693502_-	protein singed	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
QBF97617.1\|3693542_3693815_-	hypothetical protein	NA	NA	NA	NA
QBF97618.1\|3693823_3694777_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	2.5e-131	74.0
QBF97619.1\|3694787_3695573_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
QBF97620.1\|3695657_3696770_-	hypothetical protein	I6PD76	Cronobacter_phage	4.8e-110	55.2
QBF97621.1\|3696753_3698097_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	5.9e-123	54.6
QBF97622.1\|3699436_3700441_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
QBF97623.1\|3700989_3701175_-	hypothetical protein	NA	NA	NA	NA
QBF97624.1\|3701303_3701549_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
QBF97625.1\|3702362_3702557_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
QBF97626.1\|3702507_3702783_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
QBF97627.1\|3702779_3703124_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
QBF97628.1\|3703120_3703660_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
QBF99314.1\|3703656_3703956_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.9e-45	98.0
QBF99315.1\|3704569_3705016_+	hypothetical protein	NA	NA	NA	NA
QBF99316.1\|3704921_3705179_-	hypothetical protein	A0A286N2Q3	Klebsiella_phage	2.8e-42	98.8
QBF97629.1\|3705332_3706115_-	antitermination protein	F1C595	Cronobacter_phage	2.9e-114	79.1
QBF97630.1\|3706111_3706480_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	3.5e-41	63.8
QBF97631.1\|3706476_3706773_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.7e-35	71.9
QBF97632.1\|3706775_3706982_-	hypothetical protein	H6WRY8	Salmonella_phage	1.4e-23	72.7
QBF97633.1\|3707637_3707859_-	hypothetical protein	NA	NA	NA	NA
QBF97634.1\|3707936_3708170_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	7.0e-24	67.5
QBF97635.1\|3708772_3709615_-	hypothetical protein	NA	NA	NA	NA
QBF99317.1\|3709604_3710648_-	DGQHR domain-containing protein	NA	NA	NA	NA
QBF97636.1\|3710901_3711138_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	2.4e-32	92.1
QBF97637.1\|3711130_3711334_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	3.7e-29	92.5
QBF97638.1\|3711330_3711699_-	DUF977 family protein	H6WRX9	Salmonella_phage	6.4e-11	44.3
QBF97639.1\|3711706_3712456_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	3.0e-116	80.3
QBF99318.1\|3712458_3713298_-	hypothetical protein	Q8HA96	Salmonella_phage	2.3e-24	53.1
QBF97640.1\|3713363_3714158_-	hypothetical protein	C7BGF1	Burkholderia_phage	6.3e-64	51.3
QBF97641.1\|3714286_3714823_-	hypothetical protein	K7PJT7	Enterobacteria_phage	4.4e-61	69.5
QBF97642.1\|3714825_3715089_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QBF97643.1\|3715185_3715542_+	hypothetical protein	NA	NA	NA	NA
QBF97644.1\|3715768_3716077_+	hypothetical protein	G8C7T6	Escherichia_phage	1.7e-25	62.2
QBF97645.1\|3716168_3716267_+	hypothetical protein	NA	NA	NA	NA
QBF97646.1\|3716373_3716565_+	DUF1482 family protein	NA	NA	NA	NA
QBF97647.1\|3716573_3716729_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.5e-14	71.2
QBF97648.1\|3716866_3720016_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	1.0e-290	56.4
QBF97649.1\|3720028_3721138_+	enterohemolysin	H6WRX0	Salmonella_phage	1.0e-184	86.7
QBF97650.1\|3721178_3721418_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	6.8e-22	67.5
QBF97651.1\|3721427_3721742_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
QBF97652.1\|3721638_3722826_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
QBF97653.1\|3723002_3723893_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3723002:3723017	attR	NA	NA	NA	NA
QBF97654.1\|3723892_3724885_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
QBF97655.1\|3724886_3725696_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_4

3845992 : 3891659

Enterobacteria_phage(52.94%)

integrase,head,capsid,terminase,plate,tail,tRNA,portal

attL 3851216:3851237|attR 3887921:3887942

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF97772.1\|3845992_3846493_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
QBF97773.1\|3846609_3847056_+	DUF441 domain-containing protein	NA	NA	NA	NA
QBF99321.1\|3847039_3847831_-	AraC family transcriptional regulator	NA	NA	NA	NA
QBF97774.1\|3847932_3849117_+	MFS transporter	NA	NA	NA	NA
QBF97775.1\|3849148_3849841_-	hypothetical protein	NA	NA	NA	NA
QBF97776.1\|3849986_3850496_+	DUF523 domain-containing protein	NA	NA	NA	NA
QBF99322.1\|3850482_3850839_+	DUF488 domain-containing protein	NA	NA	NA	NA
QBF97777.1\|3850828_3851068_-	DUF333 domain-containing protein	NA	NA	NA	NA
3851216:3851237	attL	NA	NA	NA	NA
QBF99323.1\|3851332_3851584_-	hypothetical protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
QBF97778.1\|3851627_3852767_-	phage late control D family protein	B9A7A9	Serratia_phage	3.0e-144	70.5
QBF97779.1\|3852921_3854094_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.1e-157	70.5
QBF97780.1\|3854093_3854609_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
QBF97781.1\|3854654_3854972_+\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	1.0e-17	54.8
QBF99324.1\|3854971_3855130_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
QBF97782.1\|3855116_3858092_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.8e-220	46.6
QBF97783.1\|3858107_3858599_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.1e-54	62.7
QBF97784.1\|3858843_3860202_+	hypothetical protein	A0A1W6JNS5	Morganella_phage	7.5e-49	28.7
QBF97785.1\|3860355_3861453_-\|tail	phage tail protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
QBF97786.1\|3861452_3861665_-	hypothetical protein	NA	NA	NA	NA
QBF97787.1\|3861661_3864688_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
QBF97788.1\|3864677_3865601_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	6.9e-54	44.6
QBF97789.1\|3865602_3865953_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.3e-28	54.8
QBF97790.1\|3865949_3866537_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
QBF97791.1\|3866533_3867169_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
QBF97792.1\|3867165_3867633_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
QBF97793.1\|3867633_3867897_-	peptidase	B6SD31	Bacteriophage	3.7e-05	34.5
QBF97794.1\|3867814_3868144_-	DUF2570 domain-containing protein	NA	NA	NA	NA
QBF97795.1\|3868155_3868701_-	lysozyme	Q1I0Z1	Pasteurella_virus	9.7e-32	44.1
QBF97796.1\|3868697_3868982_-\|tail	phage tail protein	NA	NA	NA	NA
QBF97797.1\|3868972_3869173_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
QBF97798.1\|3869172_3869688_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	3.1e-40	49.4
QBF97799.1\|3869792_3870659_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	8.4e-70	57.3
QBF97800.1\|3870708_3871743_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	8.1e-96	50.0
QBF97801.1\|3871753_3872593_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	1.6e-94	65.9
QBF97802.1\|3872749_3874477_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	6.9e-233	68.1
QBF97803.1\|3874470_3875532_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.0e-141	68.4
QBF97804.1\|3876007_3876706_-	hypothetical protein	NA	NA	NA	NA
QBF99325.1\|3877680_3878688_-	hypothetical protein	NA	NA	NA	NA
QBF97805.1\|3883067_3884003_-	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.9e-83	55.9
QBF97806.1\|3883999_3884227_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.9e-05	41.0
QBF97807.1\|3884235_3884802_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	9.5e-14	33.2
QBF97808.1\|3884798_3885023_-	hypothetical protein	NA	NA	NA	NA
QBF97809.1\|3885100_3885364_-	hypothetical protein	NA	NA	NA	NA
QBF97810.1\|3885379_3885757_-	hypothetical protein	NA	NA	NA	NA
QBF97811.1\|3885772_3885991_-	DUF4761 domain-containing protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
QBF97812.1\|3886011_3886290_-	hypothetical protein	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
QBF97813.1\|3886410_3886710_+	XRE family transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
QBF97814.1\|3886825_3887809_+\|integrase	integrase	Q83VS6	Escherichia_phage	6.4e-151	80.1
QBF97815.1\|3888073_3889087_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
3887921:3887942	attR	NA	NA	NA	NA
QBF97816.1\|3889144_3889246_+	hypothetical protein	NA	NA	NA	NA
QBF99326.1\|3889245_3889320_+	protein YoaJ	NA	NA	NA	NA
QBF97817.1\|3889437_3889563_+	hypothetical protein	NA	NA	NA	NA
QBF97818.1\|3889622_3889886_-	DUF2534 family protein	NA	NA	NA	NA
QBF97819.1\|3890016_3890655_-	leucine efflux protein LeuE	NA	NA	NA	NA
QBF97820.1\|3890744_3891659_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	3.2e-72	50.0

DBSCAN-SWA_5

4170842 : 4180307

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF98056.1\|4170842_4172564_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	2.0e-14	34.3
QBF98057.1\|4172608_4173310_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QBF98058.1\|4173663_4173882_+	translation initiation factor IF-1	NA	NA	NA	NA
QBF98059.1\|4174003_4176283_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
QBF98060.1\|4176313_4176631_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
QBF98061.1\|4176956_4177178_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
QBF98062.1\|4177254_4179195_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
QBF98063.1\|4179191_4180307_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_6

4641294 : 4700831

Enterobacteria_phage(21.15%)

integrase,head,lysis,terminase,protease,tRNA

attL 4640777:4640822|attR 4688077:4688122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4640777:4640822	attL	NA	NA	NA	NA
QBF98469.1\|4641294_4641534_-	hypothetical protein	K7P7N3	Enterobacteria_phage	4.5e-18	55.7
QBF98470.1\|4641611_4643096_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.1e-29	34.1
QBF99365.1\|4643587_4644208_-	hypothetical protein	NA	NA	NA	NA
QBF98471.1\|4644354_4646841_-	hypothetical protein	B5TAB2	Burkholderia_phage	3.7e-102	46.3
QBF98472.1\|4646850_4647894_-	hypothetical protein	A0A077KC23	Edwardsiella_phage	4.4e-17	41.5
QBF98473.1\|4647895_4648483_-	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	3.8e-34	43.4
QBF98474.1\|4648475_4649708_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	7.9e-106	51.2
QBF98475.1\|4649715_4650072_-	hypothetical protein	NA	NA	NA	NA
QBF98476.1\|4650137_4650791_-	hypothetical protein	NA	NA	NA	NA
QBF98477.1\|4650790_4651378_-	hypothetical protein	A1Z003	Burkholderia_virus	7.5e-06	23.4
QBF98478.1\|4651367_4652237_-	hypothetical protein	NA	NA	NA	NA
QBF98479.1\|4652233_4652539_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	3.6e-20	48.5
QBF98480.1\|4653382_4655341_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	4.4e-42	38.1
QBF98481.1\|4655545_4656022_-	hypothetical protein	A0A068CGG2	Acinetobacter_phage	5.5e-07	29.9
QBF98482.1\|4656837_4657281_-	hypothetical protein	NA	NA	NA	NA
QBF98483.1\|4657280_4658762_-	DUF3383 domain-containing protein	Q2NPD0	Xanthomonas_phage	4.6e-60	34.8
QBF98484.1\|4658765_4659317_-	hypothetical protein	NA	NA	NA	NA
QBF98485.1\|4659298_4659667_-	hypothetical protein	Q6UJ26	Burkholderia_virus	1.2e-06	29.8
QBF98486.1\|4659663_4660227_-	hypothetical protein	A0A190XCA2	Acinetobacter_phage	1.8e-17	36.2
QBF98487.1\|4660229_4660673_-	DUF4054 domain-containing protein	E2GLV0	Acinetobacter_phage	1.3e-13	41.7
QBF98488.1\|4660672_4660999_-	hypothetical protein	A0A1X9SFA9	Acinetobacter_phage	2.1e-10	42.6
QBF98489.1\|4662036_4662519_-	hypothetical protein	A0A219YBF2	Aeromonas_phage	4.5e-33	50.3
QBF98490.1\|4662520_4663687_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	4.4e-58	37.1
QBF99366.1\|4663690_4664389_-\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	3.6e-63	53.1
QBF98491.1\|4664441_4665962_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	4.8e-105	45.2
QBF98492.1\|4665962_4667639_-\|terminase	terminase	H9C191	Pectobacterium_phage	1.8e-249	74.4
QBF98493.1\|4667640_4668273_-\|terminase	terminase small subunit	A0A2I7RHH8	Vibrio_phage	5.4e-42	48.5
QBF98494.1\|4668594_4668870_-	hypothetical protein	K7P6G5	Enterobacteria_phage	7.1e-23	61.5
QBF98495.1\|4668905_4669373_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.8e-56	73.5
QBF98496.1\|4669369_4669873_-	lysozyme	M1FJA0	Enterobacteria_phage	1.9e-74	80.8
QBF98497.1\|4669875_4670190_-	hypothetical protein	H6WRZ3	Salmonella_phage	8.3e-44	86.1
QBF98498.1\|4670716_4671262_-	antiterminator	G8C7V7	Escherichia_phage	1.9e-83	92.3
QBF98499.1\|4671258_4671399_-	YlcG family protein	NA	NA	NA	NA
QBF98500.1\|4671395_4671779_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.0e-19	43.8
QBF98501.1\|4671795_4672356_-	recombination protein NinG	E7C9S3	Salmonella_phage	9.9e-40	51.4
QBF98502.1\|4672348_4672519_-	NinE family protein	G8C7V4	Escherichia_phage	2.8e-14	71.4
QBF98503.1\|4672524_4673121_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	54.8
QBF99367.1\|4673278_4673527_-	hypothetical protein	NA	NA	NA	NA
QBF98504.1\|4674790_4675210_-	hypothetical protein	A0A2R2Z312	Escherichia_phage	7.7e-37	54.3
QBF98505.1\|4675418_4675682_-	DUF4752 family protein	T1S9K2	Salmonella_phage	2.2e-29	75.6
QBF99368.1\|4675678_4676167_-	hypothetical protein	E7C9P6	Salmonella_phage	1.3e-22	52.4
QBF98506.1\|4676403_4676697_-	protein ren	M1FPD5	Enterobacteria_phage	2.1e-25	62.4
QBF98507.1\|4676693_4677542_-	AAA family ATPase	K7PLU3	Enterobacteria_phage	9.3e-90	60.8
QBF98508.1\|4677538_4678399_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
QBF98509.1\|4678484_4678706_-	transcriptional regulator	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
QBF98510.1\|4678746_4678974_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
QBF98511.1\|4679085_4679784_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	6.2e-108	84.1
QBF98512.1\|4679929_4680334_+	hypothetical protein	NA	NA	NA	NA
QBF98513.1\|4681037_4681232_+	hypothetical protein	NA	NA	NA	NA
QBF98514.1\|4681320_4682292_+	hypothetical protein	A0A077KCC0	Edwardsiella_phage	1.7e-39	77.7
QBF98515.1\|4682299_4682584_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	6.6e-40	79.8
QBF98516.1\|4682599_4683445_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.0e-68	60.7
QBF98517.1\|4683441_4683729_+	hypothetical protein	NA	NA	NA	NA
QBF98518.1\|4683730_4684411_+	exonuclease	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
QBF98519.1\|4684407_4684836_+	regulator	M9NYX4	Enterobacteria_phage	2.6e-64	81.7
QBF98520.1\|4684832_4685489_+	DNA methyltransferase	G8C7S6	Escherichia_phage	1.1e-109	84.7
QBF98521.1\|4685485_4686253_+	dcm methylase	D5LH17	Escherichia_phage	1.7e-66	53.4
QBF98522.1\|4686249_4686468_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.6e-09	47.2
QBF98523.1\|4686469_4686685_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.0e-12	51.4
QBF98524.1\|4686686_4687022_+	DNA-binding protein	NA	NA	NA	NA
QBF99369.1\|4687018_4688062_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.9e-178	85.6
QBF98525.1\|4688131_4688455_-	hypothetical protein	NA	NA	NA	NA
4688077:4688122	attR	NA	NA	NA	NA
QBF98526.1\|4688493_4689360_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
QBF98527.1\|4689361_4689574_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
QBF98528.1\|4689619_4691005_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
QBF98529.1\|4691180_4691675_+	peptidylprolyl isomerase B	NA	NA	NA	NA
QBF98530.1\|4691678_4692401_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
QBF98531.1\|4692508_4692847_+	hypothetical protein	NA	NA	NA	NA
QBF98532.1\|4692943_4693453_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
QBF98533.1\|4693449_4694517_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
QBF98534.1\|4694628_4695705_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
QBF98535.1\|4695812_4696958_-	porin	NA	NA	NA	NA
QBF98536.1\|4697139_4699554_-	ABC transporter permease	NA	NA	NA	NA
QBF98537.1\|4699550_4700237_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-31	35.7
QBF98538.1\|4700204_4700831_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP036188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5930 : 68858

uncultured_Caudovirales_phage(27.78%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF99410.1\|5930_6599_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
QBF99411.1\|6890_7895_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
QBF99412.1\|10788_11616_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-21	37.6
QBF99413.1\|11612_12476_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
QBF99414.1\|12484_13312_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
QBF99415.1\|13320_14331_+	phosphonate dehydrogenase	A0A1V0SBV6	Catovirus	1.4e-15	25.1
QBF99416.1\|14324_15194_+	LysR family transcriptional regulator	NA	NA	NA	NA
QBF99417.1\|15899_16226_-	hypothetical protein	NA	NA	NA	NA
QBF99418.1\|16402_17383_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	2.6e-184	98.8
QBF99610.1\|19368_19650_+	DNA-binding protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
QBF99419.1\|19684_20254_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
QBF99420.1\|20368_23164_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
QBF99421.1\|23163_23361_+	hypothetical protein	NA	NA	NA	NA
QBF99422.1\|23598_24348_+	diguanylate cyclase	NA	NA	NA	NA
QBF99423.1\|24334_25297_+\|protease	Zn-dependent protease	NA	NA	NA	NA
QBF99424.1\|27138_28485_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
QBF99425.1\|28696_29179_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QBF99426.1\|29166_29433_-	DUF1778 domain-containing protein	NA	NA	NA	NA
QBF99427.1\|29608_29863_-	hypothetical protein	NA	NA	NA	NA
QBF99428.1\|30240_30444_-	hemolysin expression modulator Hha	NA	NA	NA	NA
QBF99429.1\|30888_31383_-	DNA-binding protein	NA	NA	NA	NA
QBF99430.1\|31413_31989_-	hypothetical protein	NA	NA	NA	NA
QBF99431.1\|31976_32246_-	hypothetical protein	NA	NA	NA	NA
QBF99432.1\|32603_32954_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
QBF99433.1\|33003_33366_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
QBF99434.1\|35180_36470_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
QBF99435.1\|36482_36908_+	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
QBF99436.1\|36940_37477_-	N-acetyltransferase family protein	NA	NA	NA	NA
QBF99437.1\|39373_39736_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
QBF99438.1\|39811_40357_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
QBF99611.1\|40365_41076_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
QBF99439.1\|41732_42230_+	N-acetyltransferase family protein	NA	NA	NA	NA
QBF99440.1\|42279_42789_-	porin	NA	NA	NA	NA
QBF99441.1\|44531_44711_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
QBF99442.1\|44942_45377_-	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
QBF99443.1\|45593_46994_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
QBF99444.1\|46990_47671_-	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
QBF99445.1\|48658_49039_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
QBF99612.1\|49078_49975_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
QBF99446.1\|49974_51792_-	multicopper oxidase PcoA	NA	NA	NA	NA
QBF99447.1\|52025_52475_+	copper resistance protein	NA	NA	NA	NA
QBF99448.1\|52763_53501_+	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
QBF99449.1\|53534_53732_-	DUF2933 domain-containing protein	NA	NA	NA	NA
QBF99450.1\|53772_56220_-	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
QBF99451.1\|56346_56787_-	hypothetical protein	NA	NA	NA	NA
QBF99452.1\|56873_60020_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
QBF99453.1\|60030_61323_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
QBF99454.1\|61436_61790_-	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
QBF99613.1\|63392_64073_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
QBF99455.1\|64065_65541_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
QBF99456.1\|65791_66223_+	silver-binding protein SilE	NA	NA	NA	NA
QBF99614.1\|67651_68858_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2

DBSCAN-SWA_2

193173 : 227088

Escherichia_phage(27.27%)

integrase,transposase,protease

attL 198519:198570|attR 248015:248066

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBF99575.1\|193173_193827_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QBF99576.1\|193919_194177_+	antitoxin PemI	NA	NA	NA	NA
QBF99577.1\|194178_194511_+	mRNA interferase PemK	NA	NA	NA	NA
QBF99578.1\|194647_197545_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
198519:198570	attL	NA	NA	NA	NA
QBF99579.1\|198639_199545_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
QBF99580.1\|199541_200780_+	MFS transporter	NA	NA	NA	NA
QBF99581.1\|200779_201364_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QBF99582.1\|201309_201666_+	hypothetical protein	NA	NA	NA	NA
QBF99583.1\|201856_202621_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
QBF99584.1\|202649_202832_+	resolvase	NA	NA	NA	NA
QBF99585.1\|202847_203153_-	PadR family transcriptional regulator	NA	NA	NA	NA
QBF99586.1\|203163_204369_-	chromate efflux transporter	NA	NA	NA	NA
QBF99587.1\|204524_204728_-	hypothetical protein	NA	NA	NA	NA
QBF99588.1\|204746_204926_+	hypothetical protein	NA	NA	NA	NA
QBF99589.1\|204855_205695_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
QBF99590.1\|205688_206036_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
QBF99591.1\|206199_206988_-	AadA family aminoglycoside 3''-O-nucleotidyltransferase	NA	NA	NA	NA
QBF99628.1\|206993_207233_-	DUF1010 domain-containing protein	NA	NA	NA	NA
QBF99592.1\|207394_207892_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	1.3e-22	40.9
QBF99593.1\|208036_209050_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
QBF99629.1\|209252_209603_+	DUF3330 domain-containing protein	NA	NA	NA	NA
QBF99594.1\|209728_210289_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
QBF99595.1\|212909_213770_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
QBF99596.1\|213952_214510_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
QBF99597.1\|220155_220860_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QBF99630.1\|220915_221107_+	DUF4158 domain-containing protein	Q1MVP5	Enterobacteria_phage	3.2e-22	98.0
QBF99598.1\|223733_224066_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
QBF99599.1\|226383_227088_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
248015:248066	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP036187

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP036188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection