CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP017633	Helicobacter pylori DNA, complete genome, strain: PMSS1	0 crisprs	c2c9_V-U4,cas3,DEDDh	0	0	1	0
AP017634	Helicobacter pylori plasmid pPMSS1 DNA, complete sequence, strain: PMSS1	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1013947 : 1021957

Staphylococcus_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI24484.1\|1013947_1016947_-	type I restriction enzyme EcoR124II R protein	A0A220A398	Liberibacter_phage	2.9e-29	23.6
BBI24485.1\|1016948_1017527_-	putative type-1 restriction enzyme specificityprotein MPN_089	E3T4D5	Cafeteria_roenbergensis_virus	3.8e-18	34.2
BBI24486.1\|1017537_1017927_-	N-6 DNA Methylase	A0A2H4PQP4	Staphylococcus_phage	1.4e-13	42.0
BBI24487.1\|1017999_1019277_-\|transposase	putative transposase	A0A1S5RGV0	Helicobacter_phage	3.9e-241	99.3
BBI24488.1\|1019251_1019905_-	hypothetical protein	A0A1S5RGS9	Helicobacter_phage	1.5e-116	100.0
BBI24489.1\|1019965_1020787_-	hypothetical protein	A0A2H4PQP4	Staphylococcus_phage	5.4e-42	37.4
BBI24490.1\|1020973_1021957_+	modification methylase HaeIII	A7XXH6	Thermus_virus	1.3e-42	35.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage