CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
AP019400	Cohnella sp. HS21 DNA, complete genome	16 crisprs	DEDDh,csa3,WYL,DinG,RT,PD-DExK,cas3	10	14	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: AP019400_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_2

513740-513815

Orphan

Consensus_repeat	Method
TTATAGTTGCATTTTGCGACGATGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of AP019400_2

>merge|AP019400|2|513740-513815|CRISPRCasFinder
TTATAGTTGCATTTTGCGACGATGGCGAAGGGTTGCTGGAAGAATGAGCGATTATAGTTGCATTTTGCGACGATGG

>AP019400|2|2|513740-513815|CRISPRCasFinder
TTATAGTTGCATTTTGCGACGATGG	CGAAGGGTTGCTGGAAGAATGAGCGA
TTATAGTTGCATTTTGCGACGATGG

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI31025.1\|510979_512275_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31018.1\|502622_503456_-\|sugar/pyridoxal-phosphate-phosphatase-YigL	unknown	unknown	gnl\|CDD\|319818
AP019400.1\|BBI31036.1\|522904_523579_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31035.1\|522378_522792_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31023.1\|508884_509925_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31028.1\|514862_515618_+\|methyltransferase	unknown	unknown	gnl\|CDD\|369777
AP019400.1\|BBI31029.1\|515693_516650_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379846
AP019400.1\|BBI31032.1\|519009_520926_+\|threonine--tRNA-ligase-2	unknown	unknown	gnl\|CDD\|234752
AP019400.1\|BBI31022.1\|507468_508659_-\|enoyl-[acyl-carrier-protein]-reductase-[NADH]	unknown	unknown	gnl\|CDD\|237460
AP019400.1\|BBI31021.1\|506960_507248_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132914
AP019400.1\|BBI31033.1\|521015_521579_+\|putative-nucleotidase	unknown	unknown	gnl\|CDD\|227950
AP019400.1\|BBI31030.1\|516863_517376_+\|DNA-directed-RNA-polymerase-sigma-70-factor	unknown	unknown	gnl\|CDD\|213752
AP019400.1\|BBI31024.1\|510087_510813_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377640
AP019400.1\|BBI31019.1\|503517_504831_-\|heme-based-aerotactic-transducer-HemAT	unknown	unknown	gnl\|CDD\|381256
AP019400.1\|BBI31020.1\|504837_506919_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
AP019400.1\|BBI31017.1\|501941_502631_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350620
AP019400.1\|BBI31031.1\|517365_518646_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31026.1\|512363_513128_-\|hydrolase	unknown	unknown	gnl\|CDD\|293807
AP019400.1\|BBI31034.1\|521592_522267_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31027.1\|513910_514681_-\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99836

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI31018.1\|502622_503456_-\|sugar/pyridoxal-phosphate-phosphatase-YigL	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.31432e-47
AP019400.1\|BBI31028.1\|514862_515618_+\|methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.0791e-25
AP019400.1\|BBI31029.1\|515693_516650_-\|hypothetical-protein	gnl\|CDD\|379846	pfam16472, DUF5050, Domain of unknown function (DUF5050).	6.07177e-21
AP019400.1\|BBI31032.1\|519009_520926_+\|threonine--tRNA-ligase-2	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
AP019400.1\|BBI31022.1\|507468_508659_-\|enoyl-[acyl-carrier-protein]-reductase-[NADH]	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
AP019400.1\|BBI31021.1\|506960_507248_-\|hypothetical-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.0389e-12
AP019400.1\|BBI31033.1\|521015_521579_+\|putative-nucleotidase	gnl\|CDD\|227950	COG5663, COG5663, Uncharacterized conserved protein [Function unknown].	3.07271e-08
AP019400.1\|BBI31030.1\|516863_517376_+\|DNA-directed-RNA-polymerase-sigma-70-factor	gnl\|CDD\|213752	TIGR02954, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.	8.00838e-48
AP019400.1\|BBI31024.1\|510087_510813_+\|hypothetical-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	0.000491669
AP019400.1\|BBI31019.1\|503517_504831_-\|heme-based-aerotactic-transducer-HemAT	gnl\|CDD\|381256	cd01068, globin_sensor, Globin sensor domain of globin-coupled-sensors (GCSs), protoglobins (Pgbs), and sensor single-domain globins (SSDgbs); S family. This family includes sensor domains which binds porphyrins, and other non-heme cofactors. GCSs have an N-terminal sensor domain coupled to a functional domain. For heme-bound oxygen sensing/binding globin domains, O2 binds to/dissociates from the heme iron complex inducing a structural change in the sensor domain, which is then transduced to the functional domain, switching on (or off) the function of the latter. Functional domains include DGC/GGDEF, EAL, histidine kinase, MCP, PAS, and GAF domains. Characterized members include Bacillus subtilis heme-based aerotaxis transducer (HemAT-Bs) which has a sensor domain coupled to an MCP domain. HemAT-Bs mediates an aerophilic response, and may control the movement direction of bacteria and archaea. Its MCP domain interacts with the CheA histidine kinase, a component of the CheA/CheY signal transduction system that regulates the rotational direction of flagellar motors. Another GCS having the sensor domain coupled to an MCP domain is Caulobacter crescentus McpB. McpB is encoded by a gene which lies adjacent to the major chemotaxis operon. Like McpA (encoded on this operon), McpB has three potential methylation sites, a C-terminal CheBR docking motif, and a motif needed for proteolysis via a ClpX-dependent pathway during the swarmer-to-stalked cell transition. Also included is Geobacter sulfurreducens GCS, a GCS of unknown function, in which the sensor domain is coupled to a transmembrane signal-transduction domain. Pgbs are single-domain globins of unknown function. Methanosarcina acetivorans Pgbs is dimeric and has an N-terminal extension, which together with other Pgb-specific loops, buries the heme within the protein; small ligand molecules gain access to the heme via two orthogonal apolar tunnels. Pgbs and other single-domain globins can function as sensors, when coupled to an appropriate regulator domain.	2.85924e-47
AP019400.1\|BBI31020.1\|504837_506919_-\|GGDEF-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.18599e-116
AP019400.1\|BBI31017.1\|501941_502631_+\|hypothetical-protein	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	2.39996e-42
AP019400.1\|BBI31026.1\|512363_513128_-\|hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.81457e-63
AP019400.1\|BBI31027.1\|513910_514681_-\|hypothetical-protein	gnl\|CDD\|99836	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo.	1.14515e-51

>AP019400.1|BBI31026.1|512363_513128_-|hydrolase
MLIATGIAVLDISASVLGRIDTVHPVLLWDEQQVILVDTGFPRQLNKLREAVDGCGVSFDTINRIILTHQDIDHIGNLPDIIQQASTKIEVMAHIIEKPYIQGEQRILRFTDEAIESINHMPDHVPEAFKIGLKALMLNPPSAPVDHTIAGGEQLPGFEFLTIIDTPGHTPGHISLYHEPSRTLIAGDALVVRDGQLHGPDPVSTLDKLTAMQSLNQFSSFNIDTVVCYHGGLFRGNVNERISELLTLNEADLL
>AP019400.1|BBI31025.1|510979_512275_+|hypothetical-protein
MITYLSAKRTLLLTLIGVFIFSTLNWTAVNAASSKKPAEDSFQKNLTQATSLLKEAVKYNNTVYSKNPSYDVFSELSNKWDKGKSFLIATLKSNKSTDTAYLSQLQNLGYKVTTTLHSDNSGVQFVRRYESVISVFNETLPYHTILQIKYNDGRVELVDNSSESLNVYTVNDSDIGFYQNNKKEVLMLVTYMNYRGGAWNLRLLNMSKSQRLEAITSIIPVKSLPKGFERYGDSKKTGFSNICGEGSCSDAEESQFSLVKQDESAGVVTFGTKAIKLQNVIVSKTAKSNKQKLIEQMNHIAANGTVSGLKVGLTTPYEDVVKLYGKPLEEGGTSFFKNFAVATDGKEKGEKVTWLSFNSKAIGLQGVTMAQLQQWYGVKADKDVSRKNSYSLTIQLKYEGSTLYDTHRFNVEFWSEGANKPITSMLLSVLD
>AP019400.1|BBI31024.1|510087_510813_+|hypothetical-protein
MSLVLVPATPTVRLLASVVNYFPFFALNLRIFFYDGDLTGWDMALFTFVFIFTIVQLTLYCVQGQTVGKIIFKLNIYSYDGQKAKLGKLLLRLIVGPLLSFIPPYMFINYGAILMKNKQCLHDKLTHTFVGVWREEAELAAAIPVDPATVRRRWALVLDIVFPGFIALALWILFYFLQFVYIVLFAISMGLLAFLYEPYLKIILDNMFNFGIVLTVVFYLITAYLIIRRRTSIGRILLKVR
>AP019400.1|BBI31023.1|508884_509925_+|hypothetical-protein
MAIQKLQRSYFWFLALTMLILLTDTLTVRSFSLADQDPVLVYALMFDFMLVIPFLYWLFILRKKGKSITKIIPLPLLGALVVWLVLPVHLRGSVWSAVWPVELLLLAVELAFVGYEIRIIYRVVKRFRRIASQEPNTGEALRIAVHEEIGQRKLASLLLHDISWVYFLFFSWRTKPNIDVDGSPVFTYHKKTNQVLYSAILTKIIILEGIAVHLLLQQWSHWAAWVMTIADIWLLALVWGDCRASALQPVSIKGNYVRLRYGLRIQADIPLEDIANVTSALEFHPDTKELKNSATSLIPANIRIELKQPTKVEGLLFMPRQVTTIYMALDEPEAFAQELRKYAGHN
>AP019400.1|BBI31022.1|507468_508659_-|enoyl-[acyl-carrier-protein]-reductase-[NADH]
MIIKPRARGFICTTAHPQGCAQQVQEQVNYVKDKPPIKGPRNVLVIGASAGYGLASRIVAAFGAGANTIGVYRPGDRGEGRTASAGWYNSAAFEIAAQEAGLKSFSVIGDALTDEIKAKTIDVIRSELGHVDLVIYSVATARRTNPRTGETSNSVLKPIGQPYTNKTVNFHDGVVSMITIEPATETEIQETVDVMGGEDWQMWMDALKEGGVLTDDATTVAYSYIGSQITQAVYREGTIGQAKDHLEATAKQLNDKLSAGGGRAFVTVGKALVTQSSSAIPVVPLYISALYKVMKEKGLQEGCIEQMYRLFSDRLYTEDGTAVDEEGRIRIDDWEMRDDVQEEVAQIWEQISTDNIDQLADLEGYRREFFQLFGFETDGIDYGADVNPSVVIPNLR
>AP019400.1|BBI31021.1|506960_507248_-|hypothetical-protein
MCYEIKNIDYNIEVILNGIINVREATAIRQKLFPLLQQGFRSLTFHLGMVTDMDSSGLGLLLASQKMANDCDATIAFNNVPEQIKERLYAVGIDL
>AP019400.1|BBI31020.1|504837_506919_-|GGDEF-domain-containing-protein
MNSHTQHTDPFKDREAVENLALPFARIFHDSQEAIMVTDRYSKIVSVNPAFVSITGYEQSEVIGQKPSMLKSDFQDSDYYINMWASIHKDGKWQGEIWNRRKNGEIYPEWLSISSVKDENGELINYVGMFSDITNRKNTISKLRLHAQVFSNASEGIMITDKQLKILSVNQAFTLMTGYSEQEAIGHTPRLLHSGLQNQLFYVKMWEKIHAYGFWQGEIWNKRKTGELYPEWLSITTLRDENGFITNYIGMFTDITERKQSEENLKYLAHFDKLTGLPNRTLLSELVHEASAKATKTNRKLAVFFIDLDRFKMVNDSLGHNMGDKLLKQVAERLTSVVRKDDIVSRLGGDEFIIVLQDLQDPEEATLIANHLIASIKKPFWVEDNELYINASIGICMYPTHGGDFGTLIKNADLAMYQAKIQNGGYQIFNESIINTFLRKLDLENELRWAISKKQLTLHYQPQISVETGQMEGMEALIRWNHPTLGAVSPGEFIPIAEETGSIMEIGKWVLKEVCSQINSWLSSSYVVPPIAVNLSARQFMAPDLASTIRNIVTQSNVDPHYIVIEITESSSMNDIESVLPILHEFKSFGFQIAIDDFGKGYSALGYMKQFPIDILKIDKSFVRELTSDSRSVVITKAIIDMSHGMNLRVIAEGVETEEQLECLRGMNCDIVQGYLKDRPMSSEQLEMRYLRE
>AP019400.1|BBI31019.1|503517_504831_-|heme-based-aerotactic-transducer-HemAT
MAKWFGKAPNSKAVRSSKIQSVQSTDEALIDVSNQQLTTQLKMIDLTSEDLRIIHAIQPMIVEHIDEIIEAFYTTIVDVSVLKNIIIEHSTVERLRGTLKQHIIEIFSGRINSEYIQKRLRIAEVHQRIGLEPKWYIGSFQNLQNTFLKIIHHYAQDNQQSLTYGKAITKLLNFEQQLVIEAYEKQNIEQMERYNKQIREEVKHKIGLVSQELAALTEQTSASTEQLIASSSHVNESFLHSANMAQASRQLALIGSEKISDLKRRIESIYQRSLQMESSVAQLILSSEQISSIVRIVQQISGQTKLLSLNAGIEAARAGKHGAGFAVVAGEVKKLSEDSSKAVKQISELVQLSNAHTQEVVQSIEEVKHLVELGQHESEQTRERFDHILLSLESSMNEMNKVELELEELVRVIEEVGSSTTKVASSAEDLNAATQNF
>AP019400.1|BBI31018.1|502622_503456_-|sugar/pyridoxal-phosphate-phosphatase-YigL
MQTAFLTDLDGTLLQSNASLSAYTIDVLTKALEQGIVISYATARSYSSSNRIVSAIPWKYPIVLYNGAVILDPLTQKVLNGHWLEREITNEIIDMGRMAKLLPFLFTLDNEDKERVWHEKLSRTGDLQFYESRPNDPRFAECTPLECPDANRTLIITYIGLLEELEPLKATVEQAFHDKVHIHFMKDPYIDNHYFLEFSHRKANKKEGLRKWAQLIHCTPEQVTAFGDNLNDLGMFELAGTCLAVANAHPQLLDIATGKLGCNDEDAVAHYISKVLS
>AP019400.1|BBI31017.1|501941_502631_+|hypothetical-protein
MLEWDRLLKLLREQIDHKPNKNGDTEMSTAVPKAQSQVTGKKRGKWLILAVLALLVIYLLGAESRLLGRWVPIGWFRDIPEVTQLHPIVDKNKEKLIERSKKAGIKILITSDFRSSKEQDALYRQGRSDKGAIVTQVKGGQSFHNYGLAIDFALLTPKGKAIWDMKYDGNKNGKSDWMEVVAIAKELGFAWGGDWKGFPDYPHLQMDFGYSIGELQRGWRPPYQVAKSG
>AP019400.1|BBI31027.1|513910_514681_-|hypothetical-protein
MDYIILDIEFNGRKFASDLPMEVIEIGAVRLNPSMQIVDEFSSLIKPVYFSKLNGFIKKKTGIPQEDIDVAEGFRKVIGDFTSWLNRSEAFLLVTWGGEDLKRIVFDTRMHKLDDTYWMSAYYYDLLKGYIRYKNVTNDISVEGALQELEITAEGTAHRALDDARMTAEVFRKVISKLDFDQKQQYKDQFSNSKERRLIKNAVRGMMTQKKLQQWDVFVESYLGAKIDLTDDKKRLELQQYYTSEIAKTKQPKAEG
>AP019400.1|BBI31028.1|514862_515618_+|methyltransferase
MNSKERFSSRVDTYKKYRPSYPDKAIDYLLDTVGLNSQSEVLDVGAGTGIFSELLLKRGISVTAVEPNEAMREAAIAALEGYPNYKAVQGSAEVTGLPDHSYDFIVCAQAFHWFDQTAAKAEFQRVLKPGGKAILIWNTRLTGGTPFLEQYEQLLHSLGTDYGAVNHRNISRDMLESFFKPDWLQEARFSIRQVFDFEGLSGRLLSSSYSPEQGHPNYEPMMAELRELFARNEQNGTVNFDYETEIYWGEV
>AP019400.1|BBI31029.1|515693_516650_-|hypothetical-protein
MKKTIFALGITLALLIGSIPATAATKASNVFFWLGDYQDKNWAGVNASTLDGKTNASKRLFKGDARFLTVAGDWVYFLQQDPDSEVIAGNIIRMKKDGTGSKEVTTGNKVSRFSINGQTLYYASYDDDYNTQLCSMKLDGTGSKILLKKLSFWSYEIANGLVYYVDTEDNSRLYQMKLNGTGKTAISKGSVDPYEGYKIYGDTLFYSESDANGFNGSSNLTDLNGKNKVTLPSKASIRPVSYQNQWFYYEEATYGKNGNITALVLVKIKRDGTQKKVIAKLGAPDQFLGLQGTSFVYKAPEGKLYTVTTEGKITRAAK
>AP019400.1|BBI31030.1|516863_517376_+|DNA-directed-RNA-polymerase-sigma-70-factor
MLRARKGDEKAFIELFQQYEEDIYRTAYVYLRNQEDALDVVQETAYRSFKSIATLAEPQYFKTWLIRISISCSIDLLRKRKNVLQFKPEYHELMTSGEEENIPLSLSLKDLIDSLDEEEKSVIILRFYHDYTIRETTEIMEIPLGTGKTILYRALSKLRKKAKEEDLYGQ
>AP019400.1|BBI31031.1|517365_518646_+|hypothetical-protein
MDNRVKQEMASIPIPSDLHRRSRLGVELAIAENKPASNLAINPARKRRRTLLVLTASLLGLVLLTAVLSNSQVRAAIQKALQFVPGIGIVKEEELPADRYVLKNPITQTVGSGTIVITGVMVDSRMTLVSINGENTARLDKIKIINDQGAEFIIKPSLSTWSSGQWQASYGHQGELDLKGSVSIVVGEEGKETVIPITLIKAETFTNYADMGATSTVNGVTITAITNRVDEKARISLIAQHPKEIRITDYGFFGLYAHDNLKMNVTDNIGNSIPLEIIRGILAPASDFYFKLSDKRNITYKLTLPEIYTETQDEATITIPTETTDNLNQTFEIAGFPVTITGVERLDEKNLRVYVDMHYSESTTKSLHMFNLAGLSNMGRLNERTGELVYLEFEAESNRTKQKITISRPQILIRGPWTFELPTFDR
>AP019400.1|BBI31032.1|519009_520926_+|threonine--tRNA-ligase-2
MVIKVTLPDGKVREVKQGTTIEQIAESIGSSLKKSAIAGKINGVPVDLNRSIHEDSHVEIITLDSEDGLEVYRHSTSHLMAQAIKRIYGDKAVKLGIGPVIQDGFYYDIDIEKPLSIDDLGAIEREMEKIAQENLPIVRRVVNRDEAIIIFSELEDPLKLELIRDLPEAAVITVYEQGEFVDLCRGPHLPSTGRIKAFKLLNVAGAYWRGDSNNKVLQRIYGTSFPKEAQLTEYLHVVEEAKKRDHRKLGKELELFMFSEEAPGMPFYLPKGMTLRTELENFSREVQNRRDYDEVRTPIMMNNRIWEQSGHWDHYKDNMYFTQVDETKFALKPMNCPGHMLIYKNNLHSYRELPIRISEFGQVHRHEFSGALNGMMRVRTFCQDDAHIFLRTDQIEDEMNRVISLIDHIYQVFGFEYRIELSTRPEDFMGLEADWDVAENALKNVLELRGIDYRLNEGDGAFYGPKIDFHILDALKRSWQCGTIQLDFQMPEKFDLSYIGEDNQKHRPVVIHRAIYGSIDRFIGIITEHYSGAFPLWLAPVQVKLLPVSDIFIDYALQVKQQLAEVGIRVEVDVRNEKLGYKIREAQLEKVPYMLVLGEKEQLSGTVAVRRRGDGDGGSKTVLEIKEQILNEIQIKGS
>AP019400.1|BBI31033.1|521015_521579_+|putative-nucleotidase
MKFGFDIDDTLLNLREHAFRLYNSKLNKQISIDVFHALTTIPIHDAFGLTVEEGRQMWNSHREEIFYSAPPFAEAVQVLQELVSQGHEVYYVTARTVNHCERTKNGLIQLGFPVQEGSFYCGMGDTEKVHIIRDLGLDYYFDDKPAVLDTLTELDLIVYAKDNSYNRHMDIPRIMNWSELLGILKIN
>AP019400.1|BBI31034.1|521592_522267_-|hypothetical-protein
MVRNWNLTNHAAAYGKQIVLFVPNLGQADPSFSFVAQKFGFYVGISTKLISLNLCSQNDQWSDQNLTWYFVDARAEAKMEGLERGTGTFHYYRGTGLSSQLTNLPSYRKLWCRELWEGIDVIIQEKEPTLTYDWHIHPSGRLEHLQMLYGGTEVIRLNEQGDLLIQTALGLMTRLKPVAYQITNEGNVPIACNYRILFGPEGSRTLGFELPDGYDTNLDIVIKA
>AP019400.1|BBI31035.1|522378_522792_-|hypothetical-protein
MSSLLILFTFIAALFTIVMKKDEIHKRNLAAWLLENIDQVRATGLAFNGVYIDRETVFIQYELCFSWVMFTYQSKTSYYIKEYHPTPILSLLFNSFCLIFGWCALPKGPIFTIAAIHHNLLSKPISLDSVVRDIRLQ
>AP019400.1|BBI31036.1|522904_523579_-|hypothetical-protein
MPLKSEMLSKILTILLWILTAFSVLSLLTTIVYVSDLDLYITYVYSLDGFIEVFSYPFYFIVVIVYLIWIYRVHMDLNTLFSYYPRTPGGSLVCMLLPIYNFYGIPSTFNILGEHLKRIPAAQKQGLSIKGLAAPLIIFFLGGRWLKQLVNNHPDVDSTVLVLTFAVDVILNIVYLVICMRVAKGLTNIQNIKDNHQTPPPELEKPTDWISTTLENDFGADQKS

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Click the colored protein region to show detailed information

Crispr_ID: AP019400_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_3

534579-534666

Orphan

Consensus_repeat	Method
CTAAGTTACATGAGTGCTCACCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_3

>merge|AP019400|3|534579-534666|CRISPRCasFinder
CTAAGTTACATGAGTGCTCACCCAAACCTCGCTGTAGGCTATACCCAGCCACTAATCTCCACATCTAAGTTACATGAGTGCGCACCCA

>AP019400|3|3|534579-534666|CRISPRCasFinder
CTAAGTTACATGAGTGCTCACCCA	AACCTCGCTGTAGGCTATACCCAGCCACTAATCTCCACAT
CTAAGTTACATGAGTGCGCACCCA

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI31044.1\|530409_532335_+\|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223562
AP019400.1\|BBI31053.1\|539584_540547_+\|ATPase	unknown	unknown	gnl\|CDD\|223786
AP019400.1\|BBI31058.1\|544491_544989_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31049.1\|535690_536911_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224458
AP019400.1\|BBI31045.1\|532369_532552_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31042.1\|529209_529641_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
AP019400.1\|BBI31056.1\|543227_543953_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
AP019400.1\|BBI31043.1\|529767_530274_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377929
AP019400.1\|BBI31039.1\|526884_527334_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176902
AP019400.1\|BBI31050.1\|537189_537870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373047
AP019400.1\|BBI31038.1\|524649_526800_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223910
AP019400.1\|BBI31055.1\|541646_542930_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31041.1\|528286_529126_-\|aminoglycoside-6-adenylyltransferase	unknown	unknown	gnl\|CDD\|377357
AP019400.1\|BBI31047.1\|533538_534507_-\|2,3-diaminopropionate-biosynthesis-protein-SbnB	unknown	unknown	gnl\|CDD\|274871
AP019400.1\|BBI31057.1\|544025_544406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319937
AP019400.1\|BBI31051.1\|538008_538347_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379195
AP019400.1\|BBI31054.1\|540549_541647_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224635
AP019400.1\|BBI31046.1\|533113_533491_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237345
AP019400.1\|BBI31052.1\|538607_539480_+\|iron-dicitrate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
AP019400.1\|BBI31040.1\|527479_528286_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI31044.1\|530409_532335_+\|multidrug-ABC-transporter-ATP-binding-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
AP019400.1\|BBI31053.1\|539584_540547_+\|ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.0777e-91
AP019400.1\|BBI31049.1\|535690_536911_-\|hypothetical-protein	gnl\|CDD\|224458	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].	6.11209e-18
AP019400.1\|BBI31052.1\|538607_539480_+\|iron-dicitrate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.72682e-131
AP019400.1\|BBI31042.1\|529209_529641_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	3.27562e-34
AP019400.1\|BBI31056.1\|543227_543953_+\|transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.06466e-17
AP019400.1\|BBI31043.1\|529767_530274_+\|hypothetical-protein	gnl\|CDD\|377929	pfam07853, DUF1648, Protein of unknown function (DUF1648). Members of this family are hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and in fact many of these sequences contain a high proportion of hydrophobic residues.	3.74942e-09
AP019400.1\|BBI31039.1\|526884_527334_-\|hypothetical-protein	gnl\|CDD\|176902	cd08893, SRPBCC_CalC_Aha1-like_GntR-HTH, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.	2.13059e-40
AP019400.1\|BBI31050.1\|537189_537870_+\|hypothetical-protein	gnl\|CDD\|373047	pfam14398, ATPgrasp_YheCD, YheC/D like ATP-grasp. A member of the ATP-grasp fold predicted to be involved in the modification/biosynthesis of spore-wall and capsular proteins.	5.61698e-57
AP019400.1\|BBI31038.1\|524649_526800_+\|hypothetical-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.24513e-55
AP019400.1\|BBI31041.1\|528286_529126_-\|aminoglycoside-6-adenylyltransferase	gnl\|CDD\|377357	pfam04439, Adenyl_transf, Streptomycin adenylyltransferase. Also known as Aminoglycoside 6- adenylyltransferase (EC:2.7.7.-), this protein confers resistance to aminoglycoside antibiotics.	2.14501e-119
AP019400.1\|BBI31047.1\|533538_534507_-\|2,3-diaminopropionate-biosynthesis-protein-SbnB	gnl\|CDD\|274871	TIGR03944, ornithine_cyclodeaminase, 2,3-diaminopropionate biosynthesis protein SbnB. Members of this protein family are probable NAD-dependent dehydrogenases related to the alanine dehydrogenase of Archaeoglobus fulgidus (see TIGR02371, PDB structure 1OMO and ) and more distantly to ornithine cyclodeaminase. Members include the staphylobactin biosynthesis protein SbnB and tend to occur in contexts suggesting non-ribosomal peptide synthesis, always adjacent to (occasionally fused with) a pyridoxal phosphate-dependent enzyme, SbnA. The pair appears to provide 2,3-diaminopropionate for biosynthesis of siderophores or other secondary metabolites. [Cellular processes, Biosynthesis of natural products].	2.60021e-110
AP019400.1\|BBI31051.1\|538008_538347_+\|hypothetical-protein	gnl\|CDD\|379195	pfam13453, zf-TFIIB, Transcription factor zinc-finger.	5.96931e-14
AP019400.1\|BBI31054.1\|540549_541647_+\|hypothetical-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	9.17431e-18
AP019400.1\|BBI31046.1\|533113_533491_-\|hypothetical-protein	gnl\|CDD\|237345	PRK13315, PRK13315, heme oxygenase.	3.31285e-19
AP019400.1\|BBI31057.1\|544025_544406_+\|hypothetical-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	4.6763e-14
AP019400.1\|BBI31040.1\|527479_528286_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	5.83408e-19

>AP019400.1|BBI31047.1|533538_534507_-|2,3-diaminopropionate-biosynthesis-protein-SbnB
MIYLNDGHIRELGINWQLLMSLIESTLHIMDTPEVVQPLKPYLRFKDPSNRIIAMPSFVGGETDISGIKWIASFPGNIKIGKPRAHSAIILNSPDTGVPVAVINSGLLSELRTAAVSAVMLHQYMALERRHRYRVGMIGWGPIGRRHMEMLLALHGDKIDKVKLFDLKGIDPATLKRPLNLKANISNTWQEVYRESDILFTCTSSSTRYIDEAPLLGSLLMNISLREYIPQSLSAVKAIVVDNWQEVCRENTDIEQLHKQSGLCEEDVVTLRDVTHSRALENFSPSETILFSPMGMAAFDMTLAAYYWREAVKQGVGVRLDD
>AP019400.1|BBI31046.1|533113_533491_-|hypothetical-protein
MIVAINTIKIKSGHIGEIAERFKNPKGVQHAPGFIRMELLTEAGEEHDELKVCTTWESREAFDGWVNSEAFKQAHAHSRPKPDAAASDSQTSPSHGEQPPKPAGSGIMLGAKLSVHEVAFTFPEA
>AP019400.1|BBI31045.1|532369_532552_+|hypothetical-protein
MVKTGVCSLSEISSGRFAQETILGELQAAASVLNAQEPSFRGLQAAGSVLIAQEPGLGEL
>AP019400.1|BBI31044.1|530409_532335_+|multidrug-ABC-transporter-ATP-binding-protein
MHLLSVENISKSYSEKMLFENVTFGVETGDKIGIIGVNGTGKSTLLKVISGVETTDTGRVSIGRSVILRMLAQDPTFSPEETALEHVLGGDSPQLEAVRKYAEVLAELELNPTDSKLQERLITANQRMDELEAWQLESDAKTALTKLGIHNYEDKVSTFSGGQRKRVAMAAALLQPSDILILDEPTNHIDNDSVAWLEGMLQKRKGALLMITHDRYFLDRVSNRVIELDQGRAHFYEANYSRFLELKLEREEREVASEAKRKNLLRNELAWIRRGAQARSTKQKARIDRYEALKENGPKASADKMDVSIASSRLGKKIIEIDHLTKRLGDRVLIKDLSYIAVPEDRIGIVGRNGSGKSTLLKLIAGKLTPDEGQVELGTTVKLGWFSQEHEEMDESLRVMEYIREGADQVKTSDGSMISAGQMLERFLFSPAMQWSVVSKLSGGEKRRLQLLRVLMNAPNVLLLDEPTNDLDIATLTVLEDYLDDFPGVVVIVSHDRYFLDRTVDRILAFEGEGVVTHNVGNYTEYREFAERQEALKLAAAAPVKTSNNTAAKQDSKERLVLKMSYKDQKDYEQIDGWIEKAEAEIASVARKMEAASSDSVRLQQLAEEQQSLETKLDELMERWTELNELAEQIAANKSNK
>AP019400.1|BBI31043.1|529767_530274_+|hypothetical-protein
MNKEQVKPKITIPLTKLEYFINIICVIALIGPILYIAKEMSSLPAEIPIHFNGKGEPDGWGGKRMLFLLPAISVALYYVLSALSRSPHVFNYAVPITEANAATQYLLARKMIVWLKLELIIIFGYIEWATVQSAYNHENGLGIWMLPVVLVVVFGTLGFYLSRSYKSK
>AP019400.1|BBI31042.1|529209_529641_-|universal-stress-protein
MIFKHIMVPYDGSQSATKALEKALQFVESDPNIQISVAHVINLQPVIVGDMTFSQPEGYQEQVKQQGNALLDKVKQIIGDHPHTNVVVLAGSPAEAILDYVENSNCDAIIMGSRGLSSLKEFMLGSVSHNVILHAKVPVMITK
>AP019400.1|BBI31041.1|528286_529126_-|aminoglycoside-6-adenylyltransferase
MRNEQEILSQLLDYAQSHPQVKVVLHNGSRVNPKVTKDILCDYDLIFGVIGDVFSFVQNQQWIKQFGHIMIMQQNNLQEGTEEWAIFLMLFNDGVRIDLTFRNVKHILDPSDSLTKILLDKDNLMGAVEPASDKSYITCKPTKQQYDEVLNEIWWCSTNVAKGLWRDELPYAKYMLDVVVRDALISLLSWYAGMNNDWNINTGKAGRWLKKYLPEELWDRYISTYAGSDFDQNWAALEKTGALTRIVGTAVADSLGYQYPQAEDEKVTKYLAQLRKMEK
>AP019400.1|BBI31040.1|527479_528286_+|AraC-family-transcriptional-regulator
MDPKKDFTTKGILQAEAGREKFKLSRYEPAEELRLYIQHYWAVEWDLRGHEPYRQSVLSHPNVNLVFEPGLTRVYGVWEGASEQLLQDQGSVFAVKFNPGGFQPFWKQSVSQLTGQAIPITDVFGKSAASLEKEIFACSDVPSRVGRINNFFLEHLPKHDNNVSLINDIVAALIADRGILKVEQLAGIFDISVRTLQRLFSKYVGVNPKGVIQRYRLHEVAENIEKGEAIDWLKLAVDMGYYDQAHFIKDFKAILGKSPEEYVRMVDH
>AP019400.1|BBI31039.1|526884_527334_-|hypothetical-protein
MELKYVFYVGVQPEQLWQVLISPEGTKATFFGSVIRSTFEVGSTLEYVGPGNNGDETVHVYGTVQSFEPNSVISYEEHPGPSYYPNHAELKSRITITLEAVGTSTKLTLVNDQWSDNHPSLSKTEDSWPMILSNIKTFAETGKTLDFGW
>AP019400.1|BBI31038.1|524649_526800_+|hypothetical-protein
MIRSVKWKQWIAGFGTIQNKFLLIFMSTVLVITIAMTGVSYFFSRNLITSGVEEKLKSQTHQYVSEIENKLLSKALTPQMLTSVVEANGVLGGSISYENPYLDQTTGAAMVKALAPYYDENNNVIGIATHVIDLDSLQQLVMSIPVGRNGSAFMIDSSGMVMSIKDYVKNMKVKLTEDSNESLAHLAKRMLDSAIVEDISIEPSATSQSAPSESALSDDDAGSLEEDESGTVDDEPADDLSDLGLEIDMGSDEEELPAEEQPTNTDVEAPVTVNPENTLIGSEVPQIHLTEGIGAYKDSGRTMRVYYATVPSTGWILALSIPESELYGPLFKLFEPMILIIILACVLVAVFAHLYNRYIIKNVRDIDRLAIAMAEGDFTKRTELRSGNELQRLGDSFNRTLDGLCDTMDSISQFSVEMSAHADQMKSGADETASAAEEIASSIQNVSEGAEKEAKIVLEFKEVAQEVLSRVKVINTSTERMTALASKAQKASEGGNKSLRNVILQMETINHSVQASSEQVQKLKQHSNAIDEIVAFISSIASQTSLLSLNAAIEAARAGESGKGFSVVSMEIRKLADQSAQAAGDIGRLLAEIQGSITHAAYRMEEGTGAVEAGIELARAAEKSYGDIGSSIEKVTHQATGVYESIKQIEGSTENMSSSVKDMLVLTSKNANDSSTIAASAEQQTASMQQVAASATHLASLSLLLKEKVQPYRKKR
>AP019400.1|BBI31049.1|535690_536911_-|hypothetical-protein
MDKLQLLKKVQRVQDIFPWYKQLLADNGLDKKDINSLLQLPLITSELLEQHYYSGTLPFEPREHVTSYRTSGTSSLRRKTIYYSAEDEQHYLDLKSELFQHILHPLTRTTALSDMGTGHAANTALTVFERIGIKADSIAYQQPIEQHLERLRETRPHILYTMPSILDRLLSASVDDPASYGVQHIILVGEIASPAWLESVAERMQLAEENITDTYGSIEIGTIAYYSHERGRYLFVEGIEAEGLPVEVLFPEMEPLNDQESVLVLTSQSRDLFPALRYVTYDIVRDLQPIFVQGQWRQSFKALVRRIGSELKHGEKISVYDIEDVVYRYLKDASVKIHVQSNRLTVHIDSANKDPLIYEQIKLELLDRIPEIGMMIRGGILSAMRVIPSEITFDKSVLKHKRVFYD
>AP019400.1|BBI31050.1|537189_537870_+|hypothetical-protein
MIELLSRHGMVYVKPVSGSCGVGVMRIDHSKVKGTWSVQFGTKRRIFTSFQKMYSWLRTRVKDTPYLVQRGIHVLRHKGRPLDFRVMIQKGKRIGWRVTGKAARVAHRLKAVTNGSQGGSIYGAGSLLKRTTGHKATAQLLRKFDRLAKSTAKRFARTYPRMRELGLDIAVDKRRRAWILEVNTRPDPCPFTKLADSSMLRNIIRYARGYGRTYRLQCGKAKRGGG
>AP019400.1|BBI31051.1|538008_538347_+|hypothetical-protein
MKCPICEDSRMREVEKNGILIDICPSCKGVWLDRGELDKLMQDVREVRQDYNEWYYGDSPKQQDTPRAAQQQQQPYNPPQQQHHSSQQGHSQYPPHKKRKKSVMDVFGDLFD
>AP019400.1|BBI31052.1|538607_539480_+|iron-dicitrate-ABC-transporter-ATP-binding-protein
MSRLNTDQLSLGYGSRHIVKELNLKVPDGLITALVGANGSGKSTILKSLARILNPIKGGVYLDGKLIHRQPTKEVAKHLAILPQNPTSPEGLTVRELVSFGRYPHQKGFGNMSKDDNEMIEWAMKATGMSMFSSRAVDELSGGQRQRAWIAMALAQGTEVLLLDEPTTFLDMAHQMEVMTLLEKLNKEQKRTIIMVVHDLNHASRYAQHLVALKDGTVLYEGQPEVVMTSQMLRDVFNIDADVIPDPRSGAPLCLPYGLAENPVEDIPEISADREVIFPNHRDNRIEATA
>AP019400.1|BBI31053.1|539584_540547_+|ATPase
MDKQSRELKLSAVINNVSSVVVGKEKVLEQLLIALLASGHIILEDVPGTGKTLLAKSLARTIDCQVRRIQFTADLLPSDVTGINFYNQLDGRFELRQGPVFTNILLADELNRATPRTQSSLLECMEERQVTIDGVTHHLDTPFIVIATQNPIDNHGTFPLPEAQLDRFMMCVTMGYPTKDEEQSILQRFSAANPLETLQTVISKQEITQLQSLVPKVHASSELVRYIIDIVNATRNHPDIAFGVSPRGSLQLLKASQARAVLHGRDYITPDDVKALIKPILAHRILLRDTFRGENNRVGELLDHLIAEIPVPTEAALESR
>AP019400.1|BBI31054.1|540549_541647_+|hypothetical-protein
MAVLIWAVLILFLIYLIQRLVYRVSGFKSISYDRKFSTLRIFAGQTMWMQETIANRKRIPLPWLRVESLLPAQLVFKHQESHMSINRGDQLQNHASLFSIPPLTEIVRKHEILCPHRGKYRIASYTLSLGDIIGGPSRTIQLPADCKVIVYPKVKELRDFPLDTRKYIQSVRSMISPIMEDHYYVAGIRPYRQGDSFRMVNWNATAKAGEILVHKRESMQDNDLMIILNAEMFDFANNRRIMPADFEEGLSYAASAIQYMVSGGGKAGMIYNGAADGNEGTLFRAPAKSGTSQLEFLLDALAGFRADVTLGLPYVLEQMISERKNGINYLLITGFIDAKEENLVKRLRQQGNTVQLLLLSREVAS
>AP019400.1|BBI31055.1|541646_542930_+|hypothetical-protein
MAKTPYMGKIANRLLLELFIWLPIWLILTDSEGSTIKLVAFIAAIAAFGLGFALFNLPVAWSRFTLVMILILLVLVGSVKYTSELPLFIWMGVLLWRGRYPRATVRHHALGFLICTAAVIVASNNENLHQYRWGFIVLAIIWMVTWFVAFNRGLLEEAGLGNSIVTRPVRLTSRRYLFIFLTASLLIFALTVSYGQQLLTPPKINTDWMQSGKQEPPMEPPVQQQDPLSKLKNEDQGPPSLFWKISEWIMVGVAVIVGLWFVKLLWKDREWTWRSMIKAIREWFLREKKAEKLPYVEERRSLIKEKKKGAGLWDTLFHRQKHGRAWELLNNPEKVRRVYEEAVLTSIEQGYDFKSYHSPSETIEGIQQWRLGQQLLDKKDKNSAYWKRLLHIRKSLLMLYEKARYSPHEITEKEVEGLKEQDPQKKS
>AP019400.1|BBI31056.1|543227_543953_+|transcriptional-regulator
MLPCDELKPFVACYWSLKSRTTLLEKVPHRVLPDGCVDIIFNFVTGETYFVGIMNNAGVIPLQGDVNTIGIRFLPNSVPILLRGEAEFLANNMLKLDEVLGRKLALNDNVYESGNSIEAIVQFVEAALISLFRQAAPDHKWNSILNLITDKNGLITISELADYFTVSERHMTRRFQSLIGVSTKEFLSIIRFQSVLHNIKQTQVPINWSAISLQGGYYDQSHFINEFKKRYGLTPGSIFTG
>AP019400.1|BBI31057.1|544025_544406_+|hypothetical-protein
MLSVTANLKVDNVKETLEFYKEVLGFEVVVTVPEYDQPVLNWGMVKNNGAELMFQEKSSLEEEYPVLKSNGGVGGLSLFFKVEDIGSTFEKIKGKATVIKEIHTTFYDTKEFAILDNNGFVLTIAE
>AP019400.1|BBI31058.1|544491_544989_-|hypothetical-protein
MIEHWGFTIVTFYSLAGAIENRAFTNVTFYSLAAAIENRGVTIVTCCELTGEIEHWGFTNVTFYSLAGAIENRAFTNVTFFALPGVIENCAFTIVTFYSLAAAIENCAFTIGTFFVLPGVIENCAFTIVTFYALAGAIENRAFTNVTFYSLVKEIEDRRFTIAAF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: AP019400_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_4

619091-619165

Orphan

Consensus_repeat	Method
CTCCCCTGCGCAAGACTGCGCTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_4

>merge|AP019400|4|619091-619165|CRISPRCasFinder
CTCCCCTGCGCAAGACTGCGCTTCTTATGGGAGCATGATGAAGAGCGATGCTCCCCCGCGCAAGACTGCGCTTCT

>AP019400|4|4|619091-619165|CRISPRCasFinder
CTCCCCTGCGCAAGACTGCGCTTCT	TATGGGAGCATGATGAAGAGCGATG
CTCCCCCGCGCAAGACTGCGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI31125.1\|621221_622754_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
AP019400.1\|BBI31131.1\|628761_630792_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182342
AP019400.1\|BBI31122.1\|617844_618855_+\|glyceraldehyde-3-phosphate-dehydrogenase-1	unknown	unknown	gnl\|CDD\|223135
AP019400.1\|BBI31126.1\|622788_624081_+\|enolase	unknown	unknown	gnl\|CDD\|234617
AP019400.1\|BBI31121.1\|616700_617723_+\|central-glycolytic-genes-regulator	unknown	unknown	gnl\|CDD\|225263
AP019400.1\|BBI31128.1\|625265_626942_+\|peptide-ABC-transporter	unknown	unknown	gnl\|CDD\|173857
AP019400.1\|BBI31124.1\|620464_621220_+\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
AP019400.1\|BBI31132.1\|630830_631691_+\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
AP019400.1\|BBI31130.1\|627905_628745_+\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
AP019400.1\|BBI31119.1\|615182_615410_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31116.1\|613412_613682_+\|HPr-like-protein-Crh	unknown	unknown	gnl\|CDD\|376329
AP019400.1\|BBI31118.1\|614718_614979_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370219
AP019400.1\|BBI31127.1\|624173_625076_-\|HTH-type-transcriptional-regulator-YtlI	unknown	unknown	gnl\|CDD\|223656
AP019400.1\|BBI31113.1\|610480_611377_+\|nucleotide-binding-protein-YvcJ	unknown	unknown	gnl\|CDD\|235450
AP019400.1\|BBI31123.1\|619271_620453_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
AP019400.1\|BBI31117.1\|613800_614562_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225516
AP019400.1\|BBI31120.1\|615618_616203_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
AP019400.1\|BBI31129.1\|626964_627891_+\|peptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
AP019400.1\|BBI31114.1\|611381_612368_+\|gluconeogenesis-factor	unknown	unknown	gnl\|CDD\|211689
AP019400.1\|BBI31115.1\|612373_613309_+\|putative-sporulation-transcription-regulator-WhiA	unknown	unknown	gnl\|CDD\|273194

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI31125.1\|621221_622754_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
AP019400.1\|BBI31131.1\|628761_630792_+\|hypothetical-protein	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	0
AP019400.1\|BBI31122.1\|617844_618855_+\|glyceraldehyde-3-phosphate-dehydrogenase-1	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
AP019400.1\|BBI31126.1\|622788_624081_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
AP019400.1\|BBI31121.1\|616700_617723_+\|central-glycolytic-genes-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	5.45716e-68
AP019400.1\|BBI31128.1\|625265_626942_+\|peptide-ABC-transporter	gnl\|CDD\|173857	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
AP019400.1\|BBI31124.1\|620464_621220_+\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	4.55069e-146
AP019400.1\|BBI31113.1\|610480_611377_+\|nucleotide-binding-protein-YvcJ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	6.40963e-164
AP019400.1\|BBI31132.1\|630830_631691_+\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	4.43131e-44
AP019400.1\|BBI31130.1\|627905_628745_+\|peptide-ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.31174e-89
AP019400.1\|BBI31116.1\|613412_613682_+\|HPr-like-protein-Crh	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	1.78156e-36
AP019400.1\|BBI31123.1\|619271_620453_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
AP019400.1\|BBI31127.1\|624173_625076_-\|HTH-type-transcriptional-regulator-YtlI	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.07957e-47
AP019400.1\|BBI31117.1\|613800_614562_+\|hypothetical-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	2.94095e-49
AP019400.1\|BBI31118.1\|614718_614979_-\|hypothetical-protein	gnl\|CDD\|370219	pfam08970, Sda, Sporulation inhibitor A. Members of this protein family contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilized by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A).	1.34361e-07
AP019400.1\|BBI31120.1\|615618_616203_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.44658e-150
AP019400.1\|BBI31129.1\|626964_627891_+\|peptide-ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.94118e-117
AP019400.1\|BBI31114.1\|611381_612368_+\|gluconeogenesis-factor	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.3269e-142
AP019400.1\|BBI31115.1\|612373_613309_+\|putative-sporulation-transcription-regulator-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	8.01153e-134

>AP019400.1|BBI31122.1|617844_618855_+|glyceraldehyde-3-phosphate-dehydrogenase-1
MAVVKVGINGFGRIGRNVFRASLGNPNVEIVAINDLTDVNTLAHLLKYDTTHGKLDGTVEVGEGALIVNGRTVKVFAERDPGNLPWSSVGAEIVVESTGIFTAKEKAELHLKGGAKKVIISAPATNEDITIVMGVNNDKYDPSAHTIISNASCTTNCLAPFAKVLNDQFGIVKGMMNTIHSYTNDQSVLDLPHKDLRRARAAAENIIPSSTGAAKAVSLVLPELKGKLNGMSMRVPTPNVSVTDLVAELKVNVTVEEVNAALKAAADGPLKGILNYSEEPLVSSDYNGDPASSTIDSLSTMVVEGNMVKVISWYDNEWGYSNRVVDLAAFIASKGL
>AP019400.1|BBI31121.1|616700_617723_+|central-glycolytic-genes-regulator
MREIVEIQKKLLPDLLQVMEKRYQILHRVYMTGTIGRRTLASSVDMTERVLRTELEVLRAQGLLDTATAGMTLSDSGRQLVEDMEPIVKELFGLSDLEEKVRAAFGLNKVIIVAGDSDTSDHIKMELGMAGSRVLRDSLSPGDVVAVMGGSTMARMAAQFAMPSQLKENWFVPARGGLGESVDYQANTIASELAKRTGARYRMLHVPDHLSEEAYKTIMQDPNVSEVVDMIRGARIVVHGIGDAATMARRRKLNNETMDELVKDGALAEAFGYYFDRNGKVVHRMATAGLRLEDIEAAGIVIGIAGGKSKGEAIASVMRFGHDDILVTDEAGAIEALRHV
>AP019400.1|BBI31120.1|615618_616203_-|ATP-dependent-Clp-protease-proteolytic-subunit
MSFVPMVVEQTNRGERAYDIYSRLLKDRIVFLGTQVNDVVANSIIAQLLFLAAEDPEKDIHLYINSPGGSITSGMAIYDTMQFIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAEGQASDIEIRARRILKLRDKLNGILSERTGQPLERIEKDTDRDNFMEAEVAQQYGLIDKVIDKVV
>AP019400.1|BBI31119.1|615182_615410_+|hypothetical-protein
MKFISYTAKGGGHPRNNALRATKSRGFWDFSRNNALRATKDRGFWDFSRNNALRATKDRGFWDFSRNNALRATKS
>AP019400.1|BBI31118.1|614718_614979_-|hypothetical-protein
MPERSYPYLVTNTNEDNAPYRNINEGHIDMVAARRLSDKASLLRPLKDEHLLEVYREAKKMNLSDEFIELLEEALSIRQISHYKEA
>AP019400.1|BBI31117.1|613800_614562_+|hypothetical-protein
MGRHHLKVLVVAAAVVIGSVGLVRGGGDIVSAQSVPAVTSAAYTITVGATGTIKVEPDVAYLSLAVESQGSKALEAQQANADKFAAVEKTLYEKFSIDKKDVKTTGFGVQPDYDYTEKEGRVLKGYVAVHSVQVTYRKITEIGKLLDALTASGANRLDGVQFGTEKNDQYELEALKKAMANASKKANVLAASSNRKLKGVLNVVQGDVSNIPIVYGMEAAKAQMSDMLGGSSTSVQTGQIEIRANVTVQYEMK
>AP019400.1|BBI31116.1|613412_613682_+|HPr-like-protein-Crh
MTRQPVVVRLKTGLHARPAALFVQEANKFSSDVFVEKDEKKVNAKSIMGIMSLAISSGTEVAISAEGSDAEQAVTALVQLVSKEELENQ
>AP019400.1|BBI31115.1|612373_613309_+|putative-sporulation-transcription-regulator-WhiA
MSFAALTKKELTLIENDSCCEKAELSALIRMNGTISLTNKRVVLDIATENAAISRRMYTLLKRHFNVVTELLVRKKMRLKKNNVYVVRVPAGAEAILNDLSIVSEGFLFHPSIDKDLVRKSCCKKAYLRGAFLAGGSVNNPEGSSYHLEISSMYEEHCQALVDLANKFHLNARFIERKKGFILYIKEGEKIIEFLSLIGAHQALFKFEDVRIMRDMRNSVNRIVNCETANLNKTIGAAVRQIDNIKLLSKEVGLNNLPDKLREVAEVRLQHPDINLKEVGDLLKGQVSKSGVNHRLRKLDEWAEKIRNGGA
>AP019400.1|BBI31114.1|611381_612368_+|gluconeogenesis-factor
MKDKLNLARKPRIVVIGGGTGLSVMLRGLKQKPLDITAIVTVADDGGSSGILREELQIPPPGDIRNVLSALSDTEPLLAEVLKYRFSNGTGLAGHSLGNLILAAMTDITGDFVTGITELSRIFAVRGRVLPAANQAIVLKAEMEDGSIVVGESRIPKSGLAIRKVFLEPADVEALPEAVQALQEADAILIGPGSLYTSILPNLIVPKLAEAIIQSNAVKLFVCNVMTQPGETDNYSVSDHLAAVHAHIGHHLFDYVIVNDGEIPPQVQELYAEKGSTAVHLDLEEVTSRGYKVIADTLVLFRTYLRHDAAKLSNHIYHLVEDWMLRKG
>AP019400.1|BBI31113.1|610480_611377_+|nucleotide-binding-protein-YvcJ
MDTITAKPTLLIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLIPKFAELIEQSQGRIAKVALVIDLRGREFFTALSESLNHIREHYTIHYEILFLDATDAILVQRYKESRRRHPLAPDGLPLEGIHMERKLLEDLKGWATQVIDTSSLKPAALKEKIIGRFTNLDRNNISINVTSFGFKYGVPIDADLIFDVRFLPNPHYVEQLRPKTGVDPEVYDYVMKWPETQTFLTKLLDMLQYLIPLYHKEGKSQVVIGIGCTGGKHRSVALAEYLGRRLGSSDTELVRVSHRDSDRDRQELR
>AP019400.1|BBI31123.1|619271_620453_+|phosphoglycerate-kinase
MNKKSVREVDVAGKKVFVRVDFNVPLENGVITDDTRIRETLPTIKYLIENGAKVILASHLGRPKGEVVEGLRLTAVAARLSELLGKPVSKSDEVVGASVTAQVAELNDGDVLLLENVRFHPGEESNDSELAKAFADLADLFVNDAFGAAHRAHASTEGIAHHIPAVSGLLMEKELDVLGKALHNPERPFTAIVGGSKVKDKIDVINKMIEIADNIIIGGGLTYTFLKAQGKEIGLSLCDDSKLELTLEFVEKAKKLGKNLYLPIDIVIADDFKVDANKDIVDIDHIPVGWEGVDIGPKTREIYAEVIKNSKLVVWNGPMGVFELEPFSHGTRAVAQACATTDAYTIIGGGDSAAAAEKFKLADQMNHISTGGGASLEFMEGKVLPGVVALNDK
>AP019400.1|BBI31124.1|620464_621220_+|triosephosphate-isomerase
MSRTPIIAGNWKMFKTAGEATAFVAEVKGKAEVAGVESVICAPFTALPALIEAVKGTTIKVGAQNLHFEDNGAYTGEISGVFLKDLGVHYVIIGHSERRQYFAESDEIVNKKAHAAFRHGLTPIICVGEKLEEREAGQTKEVVRVQTEGGLAGLTAEQVAESVIAYEPIWAIGTGKSSTSEDANEVTSYIRGVVAGLFSAEVADKVRIQYGGSVKPNTVAEYMGQSDIDGALVGGASLEPASFVALVEGAK
>AP019400.1|BBI31125.1|621221_622754_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTAPRPVALIILDGFGLRETTHGNAVAQANKPNFDRLWNTFPHTTLTACGEAVGLPEGQMGNSEVGHLNIGSGRIVYQDLTRISKSIRDEDFYDNSTLLGAVQHAKANNKKLHLYGLVSDGGVHSHIAHLFALLELAKKEGLEQVYIHAFLDGRDVSPDSAVGYLTQLQGKIEELGVGQVATIQGRYYAMDRDKRWERTEKSYRAMVYGDGPTAVDPIQAVKESYEKSVYDEFVLPTVIVGADGKPVGLVESEDAVIFFNFRPDRAIQLSNVFTNEDFRGFDRGDNFPKNLYFVCMTLFAETVGGFVAYKPKELDNTLGEVLVQHGKKQLRIAETEKYPHVTFFFSGGRDHVLEGETRILINSPKVATYDLQPEMSIYEVTSSLLKEIEAEHHDAIILNFANADMVGHSGMLEPTIKAVEATDECLGRVVEAVTAKGGVCVIIADHGNADMVIDDNERPFTAHTTNPVPCIVTEAGHTLRDGGILADVAPTILKLMQLPQPEQMTGKSLF
>AP019400.1|BBI31126.1|622788_624081_+|enolase
MTIISDVYAREVLDSRGNPTVEVEVRLESGALGRAIVPSGASTGAHEAVELRDGDKDRYLGKGVLKAVDNVNTIIAPELIGYDALEQVVIDQKMIEIDGTHNKAKLGANAILAVSIATARAAAEALDVPLYTYLGGFNAKTLPVPMMNIINGGAHADNNVDVQEFMVLPVGAPTFAEALRMGAEIFHSLKGVLNKKGLNTAVGDEGGFAPNFASNEEAITTVIEAIEKAGFKPGVDVFLGMDVASTEFFKDGKYHLEGEGKSYTPAEFVDLLASWADKYPIITIEDGCSEDDWEGWKLLTEKLGGKIQLVGDDLFVTNTERLADGIEKGVGNSILVKVNQIGTLTETFDAIEMAKRAGYTAVISHRSGESEDSTIADIAVATNAGQIKTGAPSRSDRVAKYNQLLRIEDNLGTTAIYAGKKAFYNLRNFK
>AP019400.1|BBI31127.1|624173_625076_-|HTH-type-transcriptional-regulator-YtlI
MDIRSIKTFQTIVKYGSFQRAAEELQYVQSTITLHIQKLEKDIGQKLLTRGKKIQLTEAGRLFLEKSVTLLKEYDFLYHSMVGLTSGEIGVIRIGVMEPTASYRMPHIMKAFMQKYPLVQVSIQIGNTAALNQMLEDDVIDIALCTTPESAQNHIFEPLFVEQVGLLMHKTHPLANQDTIYLRDMKDSDILITTSGCPYRKKLESSLLEKGGLPYHSIEIGNMSALKFYVQADFGLAVVPIITADPIPENTVLKAVYDLNYGLVTGILRKKEPLTLSTATENFLEILKEKIRMEHPPLVI
>AP019400.1|BBI31128.1|625265_626942_+|peptide-ABC-transporter
MVKRMAVLSVLLLTMVSILAGCGDAAKNKEGAVVTETPKSENVKESPKTEESRNGGELIFALAGPVAADSFDPHKSGMAQQYRVIGSIFDRLVAELPDHTIKPWLAESWDASPDGLDYTFKLRKDVTFHDGTPFNAEAVKFNFDRITNPETKSGTSLSWLGTFESSDVIDEYTIHVKLKAPYAPFLGNLAKAPLGIVSPTAVAKYGDQFAQNPVGTGPFKFESLKPNTEYVFARNENYNWAPPYAKHTGPAYVDKLIIKNVEEEATRVGVLQSKQVHAADLIPPQNVVALKSDKNFQVIETEILGSNFSWHFNVERAPFNDVKIRKAVQLGLNIDGIVKSLYLGTYERAWAPLSPSILGYDSSLENTWKPDVALANQQLEELGWVKGSDGYRSKDGKRLKIQVLEMAGNREKRQDIATIIQQQLKEIGVEVVLDVLPVAGYVQNLTDGAYDVAGASLFGGDPDVLRSRYFSKNFGVLGNFSRVFDEQLDGWLQQAYQEQDTAKRVDLYKKIQQYVTTEQTFTIPIYILPYTIGTVKEAHDISFDGTGFPVFYDAWISK
>AP019400.1|BBI31129.1|626964_627891_+|peptide-ABC-transporter-permease
MTAFIIRRLFVSLLVILGSLTLVFFILHILPGDPATIMASTNTATPEMLENLKQQFGLDQPIPLQYWNYMTELLRGDLGHSLTNGEPVGRKLLAQFPSTLVLTLLSIVAVVISGILLGIIAAIFENRWPDYVIRALSITGISMPTFWSAILLILVFSVELNWFPAIGNGGIEHLVLPVCALSLVGSGFLARMVRNSVLEVLHEPFVLTLRAKGLPEKMVIGKHVLRNALIPAVTMVGLLTGELLAGAVVIETIFARQGIGRVIVDAIMTKDLPVIRGSILLTSIIYVVVNLLVDISYSIIDPRIRQKS
>AP019400.1|BBI31130.1|627905_628745_+|peptide-ABC-transporter-permease
MSAALYFRRLRKYGFPLLAAIIMGFMAVCAIFPSAIAPYAPTAMNANDVLSSPGSKYWLGTDYFGRDIFSLIVYGSQQSLAIGLVSVIIGGGIGTLIGVIAGYTGRVTDMVLMRFIDVIMTIPGILLALAISAALGASLFNMIIAVSAATIPGYARIMRGQVMSVKGRPFIEAAKAAGATPLAILWKHVLPNSLSPLLVMAAIGIGNAVLVGSSLSFLGLGVHGEVPDWGGLLSLGRGYLTVAWWIATFPGFALTLLVVSMNILGDELRNKLDPKKSRH
>AP019400.1|BBI31131.1|628761_630792_+|hypothetical-protein
MQPLLKINKLSIKFKTIKGNLEAVQGMELDIHRGEIVSLVGESGSGKTVTSLAILQLFDKAQGYSLSGEINWNDVDIASVSKKDLNRLRGKKIAMIFQDPMTALDPLFTIGSQITEVIIRHLGLSRRAAEDQAISLLKKVGIPEAHLRVKQFPHELSGGMRQRAMIAMALACGPELLIADEPTTALDVTVQAQILHLLRELQREMGLSILLITHDLGVAAQMADRVAVMYAGKIVEQGTAQELFDQPWHPYTEGLIRSIPTLDGNRNERLYAIEGAIPHLLDLPEGCRFHPRCPYATEICRREEPELPTGNGRVAACWNTELLKEASRSDAPSKSKSVIVEIPASQDKEVEREGVQPLIQVERVSKSFTVRNQGIMRKKLDVRAVDEVSFDIYGGETFGLVGESGSGKTTLGRLVLQLEKADSGRVLFDGQDLLSMSSKEIREQRRDMQIIFQDPFSSFDPRWRVSDIISEPLKVHNLLDAQSRRDKVSEVMRMVGLNPAWQDRYPHEFSGGQRQRIGIARAIIMQPRFIVADEAVSALDVSVQSQVINLMQDLQRDLGLTYLFIAHGLQVVRHISTRVGVMYSGRLVEIAPSAELFIRPTHHYTKALIQGVPSIDPQSRKPFALLQGEPPSLVNPPEGCRFQTRCPAVSARCKQESPQLRKIGPDHYVACHDPLH
>AP019400.1|BBI31132.1|630830_631691_+|CoA-transferase-subunit-A
MTDKFTTLQQAVEWVSDGMVVAISGNMDMSPMSFIRELIKAGKKNIQLICIGSSGINADILLGSDSLRSVEFSQISLGEFGFAPHFRRRLEEGSIETKEHACPALFSAIQAGAMGIPFIPVRGLLETDYMNIRTDFIRINNPYNVEQSVAIVPSIRPDLAIFHAFKADRKGNVVAHSLQNNRILAQAAVKTIVTVEEIVTEQELASSQGSRIPSTYISAIVHAPHGAHPTTCPGYYPADADHIRGYVKAASSPTDFQHYLDSYETPTTGRTDTVPAHSIETKEVGV

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Crispr_ID: AP019400_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_6

1351687-1351807

Orphan

Consensus_repeat	Method
TGGCAGACAGGTATGTGTAGTTCACTCAGTAAGTCTGGAGAAGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_6

>merge|AP019400|6|1351687-1351807|CRISPRCasFinder
TGGCAGACAGGTATGTGTAGTTCACTCAGTAAGTCTGGAGAAGAGAAGGGTTCGTGTGCGAACGAACCACACATATGGCAGACAGGTATGTGTAGTTCACTCAGCAAGTCTGGAGAAGAGA

>AP019400|6|5|1351687-1351807|CRISPRCasFinder
TGGCAGACAGGTATGTGTAGTTCACTCAGTAAGTCTGGAGAAGAGA	AGGGTTCGTGTGCGAACGAACCACACATA
TGGCAGACAGGTATGTGTAGTTCACTCAGCAAGTCTGGAGAAGAGA

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI31693.1\|1350935_1351145_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31691.1\|1346734_1349848_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238160
AP019400.1\|BBI31699.1\|1360211_1363154_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
AP019400.1\|BBI31704.1\|1369252_1370146_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
AP019400.1\|BBI31695.1\|1352018_1355114_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|377643
AP019400.1\|BBI31700.1\|1363150_1364122_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
AP019400.1\|BBI31692.1\|1350209_1350878_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31703.1\|1367066_1369256_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31698.1\|1359081_1360215_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
AP019400.1\|BBI31697.1\|1358008_1358860_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225117
AP019400.1\|BBI31687.1\|1343116_1343890_+\|SrtB-family-sortase	unknown	unknown	gnl\|CDD\|320675
AP019400.1\|BBI31696.1\|1355225_1357871_-\|glucan-1,4-alpha-glucosidase	unknown	unknown	gnl\|CDD\|185053
AP019400.1\|BBI31690.1\|1345811_1346618_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|253605
AP019400.1\|BBI31694.1\|1351152_1351350_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31685.1\|1339922_1342016_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211417
AP019400.1\|BBI31686.1\|1342362_1342974_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271150
AP019400.1\|BBI31688.1\|1344066_1345002_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213234
AP019400.1\|BBI31702.1\|1365010_1367026_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271320
AP019400.1\|BBI31701.1\|1364126_1364984_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
AP019400.1\|BBI31689.1\|1345183_1345810_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226953

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI31690.1\|1345811_1346618_+\|ABC-transporter-permease	gnl\|CDD\|253605	pfam06182, ABC2_membrane_6, ABC-2 family transporter protein. This family acts as the transmembrane domain (TMD) of ABC transporters. The family includes proteins responsible for the transport of herbicides.	5.75521e-35
AP019400.1\|BBI31691.1\|1346734_1349848_+\|hypothetical-protein	gnl\|CDD\|238160	cd00257, Fascin, Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF).	9.20052e-11
AP019400.1\|BBI31699.1\|1360211_1363154_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.01596e-42
AP019400.1\|BBI31704.1\|1369252_1370146_+\|ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.90835e-32
AP019400.1\|BBI31695.1\|1352018_1355114_+\|glycosyl-hydrolase	gnl\|CDD\|377643	pfam06283, ThuA, Trehalose utilisation. This family consists of several bacterial ThuA like proteins. ThuA appears to be involved in utilisation of trehalose. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium.	4.11377e-98
AP019400.1\|BBI31700.1\|1363150_1364122_+\|ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	7.57169e-48
AP019400.1\|BBI31698.1\|1359081_1360215_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.15076e-163
AP019400.1\|BBI31697.1\|1358008_1358860_-\|hypothetical-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.23619e-26
AP019400.1\|BBI31687.1\|1343116_1343890_+\|SrtB-family-sortase	gnl\|CDD\|320675	cd05826, Sortase_B, Sortase domain found in class B sortases. Class B sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They can have radically distinct functions. Some members of this group attach haemoproteins to the peptidoglycan of the cell wall, while others assemble pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. In transpeptidation reaction, the surface protein substrate is cleaved at a conserved cell wall-sorting signal (Class B sortases normally recognize the consensus NP[Q/K][T/S][N/G/S][D/A] motif), and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical sortase B protein from Staphylococcus aureus (named Sa-SrtB) cleaves surface protein precursors between threonine and asparagine at a conserved NPQTN motif with subsequent covalent linkage to pentaglycine cross-bridges. It is required for anchoring the heme-iron binding surface protein IsdC to the cell wall envelope. SrtB contains an N-terminal hydrophobic region that functions as a signal peptide/transmembrane domain. At the C terminus, it contains an essential cysteine residue within the catalytic TLXTC signature sequence, where X is usually a serine. Genes encoding SrtB and its targets are generally clustered in the same locus. The prototypical class B sortase involved in pilus biogenesis is pilus-specific sortase C2 from Streptococcus pyogenes (named Sp-SrtC2) that anchors a surface protein containing a QVPTGV motif to the cell wall, as well as polymerizes the major pilin subunit Tee3/FctA and attaches the minor tip pilin Cpa. The linkage of Cpa to Tee3 by SrtC2 requires the VPPTG motif in the cell wall-sorting signal of Cpa. The family also includes SrtB enzymes from Bacillus anthracis (named Ba-SrtB) and Clostridium difficile (named Cd-SrtB). Ba-SrtB is thought to recognize the NPKTG motif, and attaches surface proteins to meso-diaminopimelic acid (mDAP) cross-bridges. Cd-SrtB does not play an essential role in pathogenesis. It cleaves short [SP]PXTG motif-containing peptides between the threonine and glycine residues and then covalently anchors the threonine residue to a nucleophile such as glycine or mDAP, but not to the peptidoglycan of C. difficile, suggesting a novel association of sortase activity with cyclic diGMP (c-diGMP)-mediated regulation to control levels of cell wall anchoring and secretion of putative adhesion molecules.	1.77101e-82
AP019400.1\|BBI31696.1\|1355225_1357871_-\|glucan-1,4-alpha-glucosidase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	5.90389e-99
AP019400.1\|BBI31685.1\|1339922_1342016_+\|hypothetical-protein	gnl\|CDD\|211417	cd11576, GH99_GH71_like_2, Uncharacterized glycoside hydrolase family 99-like domain. This family of putative glycoside hydrolases resembles glycosyl hydrolase families 71 and 99 (following the CAZY nomenclature) and may share a similar catalytic site and mechanism. The domain may co-occur with other domains involved in the binding/processing of glycans.	0
AP019400.1\|BBI31686.1\|1342362_1342974_+\|hypothetical-protein	gnl\|CDD\|271150	cd04084, CBM6_xylanase-like, Carbohydrate Binding Module 6 (CBM6); many are appended to glycoside hydrolase (GH) family 11 and GH43 xylanase domains. This family includes carbohydrate binding module 6 (CBM6) domains that are appended mainly to glycoside hydrolase (GH) family domains, including GH3, GH11, and GH43 domains. These CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. Examples of proteins having CMB6s belonging to this family are Microbispora bispora GghA, a 1,4-beta-D-glucan glucohydrolase (GH3); Clostridium thermocellum xylanase U (GH11), and Penicillium purpurogenum ABF3, a bifunctional alpha-L-arabinofuranosidase/xylobiohydrolase (GH43). GH3 comprises enzymes with activities including beta-glucosidase (hydrolyzes beta-galactosidase) and beta-xylosidase (hydrolyzes 1,4-beta-D-xylosidase). GH11 family comprises enzymes with xylanase (endo-1,4-beta-xylanase) activity which catalyze the hydrolysis of beta-1,4 bonds of xylan, the major component of hemicelluloses, to generate xylooligosaccharides and xylose. GH43 includes beta-xylosidases and beta-xylanases, using aryl-glycosides as substrates. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold.	6.49253e-26
AP019400.1\|BBI31688.1\|1344066_1345002_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	1.36318e-113
AP019400.1\|BBI31702.1\|1365010_1367026_+\|hypothetical-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	2.9527e-36
AP019400.1\|BBI31701.1\|1364126_1364984_+\|ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.14501e-57
AP019400.1\|BBI31689.1\|1345183_1345810_+\|hypothetical-protein	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.99845e-21

>AP019400.1|BBI31694.1|1351152_1351350_+|hypothetical-protein
MHDNFEQRGHEEVRMEVDVRYFRATGSWRGMKGVRSKIISSNWVMWRYERREMYDNFEQRGRGEV
>AP019400.1|BBI31693.1|1350935_1351145_+|hypothetical-protein
MDEMYDNFEQLGHEEARMEGDARNYRAMGSRGSTILGRCTIISSNWVMGRHDWSEILEIIEQRGHEEAR
>AP019400.1|BBI31692.1|1350209_1350878_+|hypothetical-protein
MFEKEFENLLKDQIRGASGQRLEMLQRDLTGTRKMLEVLYPVLGTLDGLILEYEMVSFSGVKIYGDVVHLDLRIWFEEENFLTHAELITRDRFTFERSRVRSVTISDYMYFPYSRDELEKKPEFCQRNLHELLARTTNSQYIELLKLPVYEREVLRCALLRDKAFLLADACEWLNVTKETCRKILRTLETKCYISLVGGGPLRCHGFIITPKGASLFHRFSI
>AP019400.1|BBI31691.1|1346734_1349848_+|hypothetical-protein
MKKTTLGRMLKIIGVTMFALSSLSISNSMIGVVSASPTSHSYNTSTGTLNVDYANYLSKHDIVFNSPVTVPKSGLTVGNGRVGAMVWNTSGGLTMQVSGVDASQEGFASQGLVNLYTNPGLDTSYSSYQQRLSLYDGLVTTKYDSNRTVTIMGSPNSEVIGIHVEDSRSGVANVSLDLSLWDVSTFSGGDVPDINTWRNVSTFADPTVVGLSRGQTDANNFGYTLAATVEGASFTTQTVDSKKVRLNITPSSSYTIWIASASRLNAPSNNSVNQAKTVLNGVKTTGYTSTLAAYKSWWHDFWGKSFVQYSNTNGDADYLENFYYLSTYMIAAGSYGNYPFHFINGVFSAVNDNDSGKWSNAYWYWNQRDVYHSFLASNHPEMVNTFNNLYSRNFAALKAYTMTRYGIDGIWVPETMGWDGNARGTIYSDYTKDTLSTAAEAALNMYSQYKYTNDSNYLSNTAYPFMKEATKFYAGKLSYNSSTGKYYMASSNVHEQHWGVQNAITDLAAVRALFPVAIKTSQDLGLDATLRTQWQNILNNLVAYPIDPSNSAKYFPHTPPLSQNRNNENVVLELAWPYSVSGIGAADQQMLINNYNSRPYPYGSNNVWDPAPIQAARLGLGDETFSGMKIMLQKYQDYANGRTTNTNGEFEYIGVHLIAMNESLLQSYNDKIRVFPAAPSDSTFNGKFTLLASGGFLVSSEKEANEIKYVGVKSLYGKNATVINPWGTQSVQVRRVSDNAIILTSSAGELNFATGANQAYVVERTVKPLGNYTYQALTGTVNNTLRSATLNGVVKTLGSAAAYSGAMPTFYTNSNYGGTGVSLPPGSYSIAQMVAAGIPNDDISSIRVPAGITVVAYGDGAFDGPSWTFTSDQPNLVSVGCDNTISSFIITASGGGGGGTPPVGGAPIGSTITFKATVNGKFVTAENAGASALIANRATAGGWEQFAVEDAGGGTIALKAQINSKYVTATSSGAGNLIAQASTIGSWEKFRWIDNGDGTFSLQSAGNNQYVCADNAGVASLIANRAAIGPWEKFQLP
>AP019400.1|BBI31690.1|1345811_1346618_+|ABC-transporter-permease
MHGIRLYTRFIIVYLKTKIEYDHFFVVMDFVLNTISPIMNVALLWLMLHRFNNIAGWSFDQLLFLYSLSHLAYMICAMFIWNPTRELQELVRTGGFDSYLTRPIHPITYLIMRQFSHGHFFGLFISFCMLFYSVRQLDLPVTVWSVLSLISLVIGGALIYGAFMLACGSLSFWFIKTESIYNLVVYDLRSITQYPLSLYSKAIKAILLFVVPYGFVNYIPAKGVLFPEKTVWPAELQLLMTPLLGVVLFSAALLFFKFGMRRYQSTGS
>AP019400.1|BBI31689.1|1345183_1345810_+|hypothetical-protein
MQEMLTYSILSACVYLLIGNSMIDRLGSKIQSGEIAMDLIKPIPLTRYMFAESGGQTLFRMVFEMIPILVFGMVLYGFVLPSVANFAMFILCLFNGIIIYYLMSFICGLFAFWYLISWHTQSIFQIVMALCSGSLLPLWFFPESFSKVVSLLPFQLVFYGPISVFLGKRTLEEELTIVGMQLLWIGILSLILKMVWVKALRKLVIQGG
>AP019400.1|BBI31688.1|1344066_1345002_+|ABC-transporter-ATP-binding-protein
MGAFKDFVAPRYELKEAVRDVSFQINKGEIVGYIGPNGAGKSTTIKMMVGILVPTAGRIEIGGLAPYDNRLENSRKIGVVFGQRTQLWWDIPVIETYKLMQYIYKISNEQYEHNIRQFSEILGIDEFMYTPVRQLSLGQRMRADLCAALLHNPEILYLDEPTIGLDVDVKERVRGFIKEVNRTRETTVILTTHDTSDLDKLCSRVMVIDQGELMYDGELDYLKRNYSKCDILTIETESEMPEQWLRERFNDAYTREGRKCHIRIEQEQESSADCIAWFIHNSRVKDVQIRQTDIDEVIRNLYQTFKQAERE
>AP019400.1|BBI31687.1|1343116_1343890_+|SrtB-family-sortase
MFAVGAIVLLFSMVKVGAYLQDGYKNRKTYAEIRNVYYEPVRVQQLSSLPKPSEPIAQPQPSTAPLEKKFNVRFTDLVKRNEDIVGWITIEGTRIDYPVTQGEDNEFYLEHDVNKEENVAGSIFMDYRNNVGGFNRNFIIYGHDMKNKTMFADLVGYESRWNFENKATIEFDTIYGTGKWIIFSAYTTDSSFDYIKTDFASDEEYGAFLNEVKEKSLHHSDVEVSSKDTILTLSTCSSAFENARFVVHAKLIDQNGD
>AP019400.1|BBI31686.1|1342362_1342974_+|hypothetical-protein
MKKSMLVLSMALVLFLCSSALAFAAINPYGKIAPADNSELNSDSGKFSDGKGPRVEENENKNLGYIIAGNYAKFSGVDFGADGAAKVKIELATPNAGGSVAFLVDDPKGTPFATVKYDPTGDWQKYQWFEAPVTGLTGAHDLYVVFIEGDINVRAVQFEAAGGGGAAAANPATGDNGVMLYVMLAAGAAAAMFLSRKTFAKQQ
>AP019400.1|BBI31685.1|1339922_1342016_+|hypothetical-protein
MRTFHSLSRKNVTIACILIAALLLTPFTLSPSIASAASAFNQIAVSSYSSQSGIQLEASSEGGQNVGFIDNGDYIAFTNMDFGSGANSFQARVASNASGGNIEIRLDSLTGTLVGTCAVPGTGGWQNWTTQTCSLSGSASGVHTLYLKFTGGSGNLFNILWFKFAGGLSAFNQIEAATYSSQSGIQTEASSEGGQNVGWIDSGDYLAFYSVDFAGGANSLQARVASNTTGGNIEVRLDSLSGTLAGTCTVPGTGGWQNWTTITCAVANVTGVHNLYLKFTGGAGNLFNIKWFKFSNTTPVTGGDVVGKLFAGYQGWFSAAGDGSPNGSWIHWSKNSNAPTANSNVNFELYPDIREYSKLYQTNLANFGNGTQAKLFSSYDQETVNKHFEWMQTYNISGAALQRFGADESDTPNNWKTNRDNVAVKVKNAAEAYNRKFYVMYDITDMNASNWAKAVKHDWTTNVVNNMKLTSSSAYAKQNGKTVVCIWGIGFTDRPGTAAEHADLINWFKNQGVYVIGGVPTYWRTGNNDSKAGFMSVYESLDMLSPWFVGRFGRNGLSDVDAYKTNQYGPDFTYTQLRNIAYQPVIWPGSAWSNMTGGPRNENPRLHGDFMWRQAYNMKDLGINTGYVAMFDEYDEGTAIAKIAENSSMIPTNQYFLTLDADGVSLSSDFYLRLAGDINRLFNGQIPLTVNHPTSHQ
>AP019400.1|BBI31695.1|1352018_1355114_+|glycosyl-hydrolase
MLTNTKAKVIFSLSLLVIILLLSGAYYYWFASSPTEKSKSFKVLVFSKTEGFRHDSIPAGLVAIRQLAAEHQFQVDATEDSSKFTADGLSPYAAVIFLNTTGDVLNAEEEGAFQSYIESGRGYVGIHSASDTMHSSAWYMSLVGAMFTDHPAFAAGTVKVADKVHPSTASLPSNWQRSEEWYNFLQNPRGNVHVLATVDEKSYMGGKMGYDHPVSWCQEVSGGKSWYTALGHAPESYSKDPTFLEHILGGIQWAAGQAEGDCSATVYTDTNYQKQELLTGVQAPMGFDFAPDGRMFFIEINGKVKVYSPVTELATEVVSLDIVSGNEQGVLGIALDPEFAKNNWLYLFYSPAGADNEDRISRFTVKGDKIDKATEKIVLRVPTQRTECCHHGGDLEFGADGNLYLSTGDNTNPFASDGYAPIDETAGRSAWDAQRSAGNTKDLRGKILRIKPKPDGTYTIPEGNLFSDGSGSPEIYVMGTRNAFRFSVSPFDNTVYWGDVGPDAGVTTMSRGPKGYDEFNQAKTAGNYGWPYCIGNNKAYVDYDFATHSLGKPYNCDSLTNDSPNNTGARSLPPARAALIYYPYGPSPEFPEITDSTGRTAAAGPVYKYDKSNANEFKMPAYLDKSLIIYDFSRQWFKEVKLDEQGNLLKINPFLSNMKFDHPIYAKIDKDGSLYIAEYGTGGSDGKISKILYTGAAGNQAPNAQATASVTNGLAPLEVSFTADKSYDTDKDPLTFSWDFNGDGKEDSNLPNPSFIYKKNGNYNAKVTVSDNKGNSSSVIIPITVGNNAPVVTITSPTKRGFFAWGDKISYTVTVTDAEDSTIDCARVKVTPALGHDEHSHPSPTQTGCTGTFETVFSDTNIENTFFYLTASYTDNGAGEAAPLTGASTIVLLSKDRQAEYYDNWSGGKLQTENTADVGAGRNLGFIENGSWLSYKDINLEGISGISARVSSAGSGGTIEVRADSISGPLLATLKIPVTGDWQKWVDVKEELNNVPSGEHNLFFVFSGGSGYLFNVNKFDFIGNGIAMKTK
>AP019400.1|BBI31696.1|1355225_1357871_-|glucan-1,4-alpha-glucosidase
MIDIVKETVGFRDPNAPVEDRITDLLSQMTLKEKVRQLDQYFGASFMSSSHPRMNTVMAKDAKILWEKVMDIVGEDGVGCIHDLYGTTKVNNQLQRYAVEQTRLGIPILFSEEAIHGLLRPGCTIFPHAIMMASTWNPDIVEEIGKSIAAETRSFGIHESFGPVLDLAREPRWGRVEETFGEDTHLASRMAVSMVHGLQGDDLASDRSIIAEPKHFAVHGIPESGLNHSPSSIGRNDIETYYMPIFEAAFVEGGAVNAMCSYNSIDGIPCAADSSLLTDMLRGQWSMPGFVRSDLGAIARLKTAHFTASSEKEAIRQALVAGTDMQYYDFPHELYQNAIIDMVESGELPIETVNLAASRVLRVKFMLGLFEKPYTEPELYKSVVRSKQHTDISLQAAREGIVLLKNDQNLLPLRRSISTIAVIGPSADVVRLGDYTPYIEGFEPVTLLKGIGKLVSPETTILFAKGTGILEDELDAIPIGSFSDGCGNSGLLGEYFNNPKLEGCPVLTKIDSFINFNWVITKPDQSIDTFHFSVRWTGKLVPKQDVSGYIGTVSRDSMRLWLDGNLIVDGWGEGKNATQSVPVMLYAGHEYDIRVEYCKDADGVSALLGWSYAIEGIQDAVQIARQSDIAIVALGDSHRTSGEGTDRSSLDLPGAQLTLLKAIHATGTPIVLVLQNGRPITLGWEAEHIPAILEAWYPGENGGDAIAEVLFGDYNPAGRLPISFPRTIGQIPVYYNRRRGGTTQYVEGDNKPLYSFGHGLSYTTFEYSSIQISSTRISQEEEVNVSIDVTNTGQMAGDEVVQLYLCDVVSSIARPEKELKKFKRIHLPLGEKTSLSFTLTPKELKLYGRDGKWIVEPGSFRVMIGSSSELIKASVEFEVIV
>AP019400.1|BBI31697.1|1358008_1358860_-|hypothetical-protein
MNPWHEKISLQLSNPLKIIVSTLEEGFPTHWHQEIEIVYVIDGQMQIGINEIVYSLDAGDILFISSCEVHHYLPNPQGCRKIILQLGKSVFDTYADLIFGHRFMFPHLKPDSSIPFDSKMSLHAWIKTHIVGILNEWETNLTGHELIYKARISDIAASIIRHLPMEAFSQHEKTKRLEQLERLDKVLKYIESDYGSEITLQSAADVAGFSVSYFSRFFKAATGSNFVDYVNTFRANIAMRLLLREEQSVTDIAYCSGFNSIETFNRVFKKVNGCTPSQVRSKK
>AP019400.1|BBI31698.1|1359081_1360215_+|ABC-transporter-ATP-binding-protein
MGSITFSHVFKQYKGESRPAVNDFHLSIEEGEFLVLVGPSGCGKSTTLRMLAGLEEISAGELYIDDKFMNYVSPKDRDIAMVFQNYALYPNLSVYDNIALGLKLRKTPKYDIELRVNRVAKVLEISHLLDRKPSQLSGGQKQRVALGRAIAREPQVFLMDEPLSNLDAKLRAQTRAELIKIQSDLKRTTVYVTHDQVEAMTMGTRIVVMKDGVIQQVAPPKQLYDEPANLFVAGFIGSPQMNFIEGNVTLEEGRYYFSNKRMKLLLPRSYDSSFEKLTRAVRNVILGVRPENVLLKPFEPDDDDENGFAMSVVQMTEVTGADSYVYVTVGDSKVIARTDPESIYLKDDKPAIGFNMGKLHFFDVSTGVSLAAGGDGG
>AP019400.1|BBI31699.1|1360211_1363154_+|ABC-transporter-substrate-binding-protein
MRRIKFPRSTLRLLLAAIVLFGAFRWISGSDPVIYATTINASDLLSYKDNKVTQPYAKLINSTPDAGKPGKEQPIPINATQYAKASTEASLSKDAEGAALNWSNSQGWVEWTFNVANAGWYELHMDYNPLEGGNSAVVRGVQIDGRFPFLESENLELERLWKDAKYPYDRNEIGMQIRPQQTEITGWKTKALSDFSASSEPLLYRLEQGEHTLRLIGEREPVALRNLVFQPRNPTIPYSDYIAAHPANTSQKSWYSVIEAENFMRKSSLAIQTDHWSEPYISPDPKGRITYNVLGGQRWRMPGEWVEWKLSVPESGLYEIDLKNFQNYRNGFRAYRTLEIDGKAPFREMFHFGMDYHKEFLITTVGDSEGKPYQFYLEKGDHTLRMTADSSELQPVTLALKDTLGQLAEFDRHIRLITGNYSKNAFDANTDSTRTWDMVKFDPDIEAKMQSFIDRLSAIREYINGLNKKNSDLSEAIKVSITILDELRANVNEVPNKINDFSTIQSNIGTWMATLAQQPLLFDYIVVRTPGTTTGLKEPTPLSRVPYSIVDFGRSFYMDYDTKKHNKNEALTIWVQRGRDYVDLLREMVDQDFTPKTGIEVNINLMPNPNVLVLGNAAGDVPDVALGIGEATPADFAMRDAAQDLSSFAGFTEVSKRFIPGVKRALTYNGGTYGLPEIQNFQMLFYRTDIFENLKLKVPDTWEDVFDILPTLQENGMTMNYPKADFMTMFFQNEAEIYSPNGLKANLTSTAGQKAFKQWTEMYRKYNLPIDIPAFFQHFRDGDLPIGVADFSTYVQLLVAAPEITGHWKIAPLPGIKQADGEVARWSSQGTSAAMIMKKSERKDDAWEFLKWWTSGEVQAQYAKDIESFYGIEFRWNTANVEAMRTLSWPNDDLLALREQGRWAKNMPYVPGYYFLTREMDFAWNRTVFDGMPAQESLEKAQLSLQREMNRRQKDFGITSKDDLRIPQIIKPYEWEGSEP
>AP019400.1|BBI31700.1|1363150_1364122_+|ABC-transporter-permease
MNTELSPSLVKVARMTSVRLKWNRFWTEIRRDSFCYLFLAPFLICFTVFIVVPVIMAATLGFTSYDGFGSLRFIGFDNYIALFTQDIIFLTKALPNTFLFALIVGPGGYILAFLFAWLIHQLPLRVRDYYTLAFYAPSMAGGVALSVVWIAAFSGDRVGYLNNFLLHMGWIDNAIVWLQKPEYLLKVMIVVSLWISFSVGFLAMLAGLQTVNRELYEAGRIDGISNRLQEVFYITLPSMKPQLLFSAVMTIVTTLKAGSISTQLTGLPITPQYAGHLVINHIDDYAFIRFELGYASAISVVLLLVSYFAMRFAYRLFGSKEEL
>AP019400.1|BBI31701.1|1364126_1364984_+|ABC-transporter-permease
MIRRLRRITPFQVILVVVFTGLAAFMSLPIVFILNHAFKPTNELFLFPPRFFVQNPTGSNFEQLFLHATNATVPFSRYVFNSVVVVTLTLISVIVVSTMAAYVLAKYQFHFKQLILSLITLSLMFAPETVGIPRYLIISGIHLNNTYLGHILPALASPIAVFMLVGFISQIPGELMEAARIDGASHFGIFTKIVLPLAVPAIATISIFTFQGVWGDIETSTLFMQDETMRTLAFYVNSLLSGLQNSVAGQNVAAAAGLLMFIPNLIIFLLFQRKVLETMIHSGIK
>AP019400.1|BBI31702.1|1365010_1367026_+|hypothetical-protein
MKRLLAFVLLAATALLVAPQSTHARIPYQTTYFDSNRSLWMGIQAVYKPFGAYGDHFDEPVDLHIGADDKVYVADKGNSHIFVMNNDGTLIQTIGDEEGAGHLDSPEGVFVTPDGTVYVADSGNQRIAVFSADGSFVREYKKPTSNLLQSEHFVPIKLVVDRRGVMYVAMNASYQGLLRMNKDGEFMGFFGANKAQQTLLNWLKKAVLNKEQLAKENPSLPKPIVNISMDQEGFIYTATAGGFGSAAIRKLNAGGVDSYKGKLFQHSQGIVDVAIDQNGFLYNVDLDFGRINIFDRNGTVLFAFGFTDNNTQQYGVMGFPTSIGIDSKSNIWVSDSRTKTVHKFVRSDFGNDVMNAIVLYGEGKYADSKPYWERVYARNEMFTGTYQGLGKVYLEEKDNAQALSFMKEAYDTKGYSKAFWEIRLEWLQNHFIIFVMVLIAIGLIIKFLPWGIKKLLSRWSLPSVFKRLVADLRNLGYVMIHPYHGFYKLKEARVSLWSILLILAAVIGMKIITVYTTGFLFYPVDLSQINLLRILGQFVLPWITWIIANYLVCSIKDGEGKFREVIQGSTYALAPFLFFSPPIIILSNILTLDESVLIRSLTTVMYIWMAVMFMVMTQVIHNFDFLESLKNIAITLFAIATIWLFGFLVFGLSYNLYDFFYQLYKEVNFYR
>AP019400.1|BBI31703.1|1367066_1369256_+|hypothetical-protein
MSICILVVLLFIFFTRGGETSLVHALEEAGIAEPVSMHTPLYVGEPWKPGAGSDGFALALENKNYSLYVRPDNTQIALLDKRSGHRWTSNPTKEQLAGETVKGLPLANLQSPFALTYVTTTGKDQTTEKVVNALDPKLEIAMIKNDKGLQISYSFTEKKLGLAIQYELTDKGLKVRVPTDGIKEEGDFVVFSLDLLPYFGAAAAGEDGYIFVPDGPGGLIKFDSKRADLSKGYIHQVYGLDVTNMLNWFRSGERREDIAFPVFGVKRGANAFVAIITRGGDSSNIAAMPPGMKSTFYNVYTSQIYRENYLYQRSRIPPTPIKAVQKERLKTDREIEYRFLSSQDTDYVGMANAYRDYLIETGGLGSPLKPVEHVPLYLKIMGGGFRAAYNQIEYVPTTTFAQATEIVQGLQKKGVANMEVVYYGWQRMGGNKIDKRFPIEAKLGGNSAAKAFVSELRKSDIGVQFYDQLIWLDDSSTSLSPRNSGVRKMDGTVFKDETWFLSKPARTVDLAYQSIQELKKIGVSGMFYDGLGSMVFNDYDPTGLTTREDAIKIYKGLLDYTRRELGTSGVYRGNDYSLNNVDYIDDLPNDSSYDFMIDETVPFYPIVLHGYVSYSFGDGGNLRNDVQTEFLKSIEYGAMPTFFLTYDESRKLMDLNIWFYLFSSQYEKWADRIGKEYGQFDSLAKVFAQKIVGHKKLADKRFETTYEDGTRVIVDYNKGTFDVEGGGGA
>AP019400.1|BBI31704.1|1369252_1370146_+|ABC-transporter-permease
MSQAKVIAKQRRLYFTKRYGIGLLFLLPWLIGFCVFVAIPIGWSLFMSLHKVAVVPGGFKYDWIGMKNFRAAFVTDNIFPIELITYFQQMLLMVPMIVIFALLISLMLNQRFPGRFIYRAIFFLPVIFATGQVLSELFSQGAGEIPFLEQYNLEPLINQYVGKQFTEIIMVVLSRAILILWYSGVQILIFIAGFQTISPSIYEAVRIDGASPWDSFWKITLPASIPFISLNVLYTIIDLFTFPLNPVLKHIKDNMFKIETGYGYASALAWIYFGFIFVLIALVLLLFNRSMNTRRSR

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Crispr_ID: AP019400_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_7

1399313-1399799

Orphan

Consensus_repeat	Method
GAAAAAATCGTACAACACC	CRT
AGCCCAGTTACTAGAAAAAATCGTACAACACCT	PILER-CR

9 spacers

csa3

The CRISPR arrays of AP019400_7

>merge|AP019400|7|1399313-1399799|CRT,PILER-CR
GAAAAAATCGTACAACACCCCACAAACGTGTTCTCCCAAAGCCCAGTTACTAGAAAAAATCGTACAACACCTGCCAATCGTGCCCCATCCGAGACCCGTTGCTCGAAAAAATCGTACAACACCCCACAAACGTGTTCTCCCAAAGCCCAGTTACTAGAAAAAATCGTACAACACCTGCCAATCGTGCCCCATCCGAGACCCGTTGCTCGAAAAAATCGTACAACGCTCTCCAAGCGTGCTCCTTCATAGACTAGTTACTAGAAAAAATCGTACAACATCCAACAAACGTGCTCTCCCAAACCCTAGTTACTAGAAAAAATCGTACAACGCTCCCCAAGCGTGCTCCTTCATAGCCTAGTTACTAGAAAAAATCGTACAACACCAGCCAATCGTGTCCCGTCATAGCCCTGTTGCTCGAAAAAATCGTACAACATCCCACAAACATGCTCTCCCAAACCCTAGTTACTAGAAAAAATCGTACAACGCC

>AP019400|7|1|1399313-1399799|CRT
GAAAAAATCGTACAACACC	CCACAAACGTGTTCTCCCAAAGCCCAGTTACTA
GAAAAAATCGTACAACACC	TGCCAATCGTGCCCCATCCGAGACCCGTTGCTC
GAAAAAATCGTACAACACC	CCACAAACGTGTTCTCCCAAAGCCCAGTTACTA
GAAAAAATCGTACAACACC	TGCCAATCGTGCCCCATCCGAGACCCGTTGCTC
GAAAAAATCGTACAACGCT	CTCCAAGCGTGCTCCTTCATAGACTAGTTACTA
GAAAAAATCGTACAACATC	CAACAAACGTGCTCTCCCAAACCCTAGTTACTA
GAAAAAATCGTACAACGCT	CCCCAAGCGTGCTCCTTCATAGCCTAGTTACTA
GAAAAAATCGTACAACACC	AGCCAATCGTGTCCCGTCATAGCCCTGTTGCTC
GAAAAAATCGTACAACATC	CCACAAACATGCTCTCCCAAACCCTAGTTACTA
GAAAAAATCGTACAACGCC

>AP019400|7|2|1399352-1399488|PILER-CR
AGCCCAGTTACTAGAAAAAATCGTACAACACCT	GCCAATCGTGCCCCATCCG
AGACCCGTTGCTCGAAAAAATCGTACAACACCC	CACAAACGTGTTCTCCCAA
AGCCCAGTTACTAGAAAAAATCGTACAACACCT

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI31734.1\|1405660_1406383_+\|trehalose-utilization-protein-ThuA	unknown	unknown	gnl\|CDD\|227150
AP019400.1\|BBI31726.1\|1395229_1396903_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
AP019400.1\|BBI31720.1\|1390250_1391012_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
AP019400.1\|BBI31735.1\|1406854_1410121_+\|glycosyl-hydrolase-family-31	unknown	unknown	gnl\|CDD\|269883
AP019400.1\|BBI31729.1\|1400070_1401099_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
AP019400.1\|BBI31723.1\|1392503_1393169_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|319859
AP019400.1\|BBI31732.1\|1403699_1404527_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
AP019400.1\|BBI31728.1\|1397972_1398887_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI31722.1\|1391513_1392467_+\|putative-metal-ion-transporter-YfjQ	unknown	unknown	gnl\|CDD\|213365
AP019400.1\|BBI31736.1\|1410209_1414061_+\|glycosyl-hydrolase-family-31	unknown	unknown	gnl\|CDD\|224418
AP019400.1\|BBI31721.1\|1390981_1391386_-\|transcriptional-regulator-PerR	unknown	unknown	gnl\|CDD\|133478
AP019400.1\|BBI31731.1\|1402816_1403710_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
AP019400.1\|BBI31738.1\|1415436_1415775_+\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
AP019400.1\|BBI31733.1\|1404560_1405652_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|223745
AP019400.1\|BBI31724.1\|1393269_1394364_+\|arabinose-metabolism-transcriptional-repressor	unknown	unknown	gnl\|CDD\|380483
AP019400.1\|BBI31727.1\|1397028_1397676_+\|TVP38/TMEM64-family-membrane-protein-YtxB	unknown	unknown	gnl\|CDD\|223475
AP019400.1\|BBI31719.1\|1389561_1390119_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
AP019400.1\|BBI31725.1\|1394470_1395175_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
AP019400.1\|BBI31737.1\|1414220_1415123_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224423
AP019400.1\|BBI31730.1\|1401231_1402590_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI31734.1\|1405660_1406383_+\|trehalose-utilization-protein-ThuA	gnl\|CDD\|227150	COG4813, ThuA, Trehalose utilization protein [Carbohydrate transport and metabolism].	1.71101e-131
AP019400.1\|BBI31726.1\|1395229_1396903_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
AP019400.1\|BBI31720.1\|1390250_1391012_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.56691e-37
AP019400.1\|BBI31738.1\|1415436_1415775_+\|transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.88005e-17
AP019400.1\|BBI31729.1\|1400070_1401099_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.07159e-108
AP019400.1\|BBI31727.1\|1397028_1397676_+\|TVP38/TMEM64-family-membrane-protein-YtxB	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	7.61587e-35
AP019400.1\|BBI31732.1\|1403699_1404527_+\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.27533e-84
AP019400.1\|BBI31733.1\|1404560_1405652_+\|oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.89733e-64
AP019400.1\|BBI31722.1\|1391513_1392467_+\|putative-metal-ion-transporter-YfjQ	gnl\|CDD\|213365	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the TmCorA-like family are found in all three kingdoms of life. It is a functionally diverse family which includes the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and three Saccharomyces cerevisiae proteins: two located in the plasma membrane: the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	7.42815e-163
AP019400.1\|BBI31736.1\|1410209_1414061_+\|glycosyl-hydrolase-family-31	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	3.5803e-166
AP019400.1\|BBI31721.1\|1390981_1391386_-\|transcriptional-regulator-PerR	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	5.04711e-39
AP019400.1\|BBI31731.1\|1402816_1403710_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.00416e-85
AP019400.1\|BBI31735.1\|1406854_1410121_+\|glycosyl-hydrolase-family-31	gnl\|CDD\|269883	cd06597, GH31_transferase_CtsY, CtsY (cyclic tetrasaccharide-synthesizing enzyme Y)-like. CtsY is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain; CtsZ belongs to a different subfamily. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	8.22991e-146
AP019400.1\|BBI31724.1\|1393269_1394364_+\|arabinose-metabolism-transcriptional-repressor	gnl\|CDD\|380483	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.51027e-128
AP019400.1\|BBI31723.1\|1392503_1393169_+\|phosphoglycolate-phosphatase	gnl\|CDD\|319859	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW. This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.04471e-54
AP019400.1\|BBI31719.1\|1389561_1390119_-\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	5.49089e-91
AP019400.1\|BBI31725.1\|1394470_1395175_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.43669e-170
AP019400.1\|BBI31737.1\|1414220_1415123_+\|hypothetical-protein	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.18352e-12
AP019400.1\|BBI31730.1\|1401231_1402590_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.95042e-85

>AP019400.1|BBI31728.1|1397972_1398887_-|hypothetical-protein
MVPAVVSSLDLADPAGRAVASSLGLADPVGRVVVSSPDLADLEVREAVSSLGLAGLVVREVASSLDLADPVGREVASSLDLVVLAVREVASSPDLVDPVGREVASSLDLAVREVASSLDLADPAVRVAVSSLDLAVPVGQGAVSSLDRVVPADQAAVSSLDLAVPAVREAVSSLDLAVPVGREAVSSLDLAVPVGREDLVISRCLHDHTLQGMERHHGRHIPDLDPDLGHFRHHGRHIPDLDPGLDHFHLHGLHSLDLDPDLDHFRRRGLRSLDLDRFQSLYRSPFRFRFQDRNQSHQHLLSSP
>AP019400.1|BBI31727.1|1397028_1397676_+|TVP38/TMEM64-family-membrane-protein-YtxB
MRRSTVLKITAAVIIVAALLWLDFKYLKVNPETIRTWVLSFGWLAPVLYIGMYIARPFILFPASVMSMAGGLAFGTGMGILYTLVGAVTGAVLSFLVARKIGGGFFRGREDPRLAKIERAMERRGFMMVLLLRIAPFVPFDLVSYAAGVARVPLRAFLPATFIGTLPGTFAYNFLGASLTKGSWREFLIAGFVFAIALSVPFLLRRKVQREVEDS
>AP019400.1|BBI31726.1|1395229_1396903_+|ribulokinase
MSQKYAIGVDYGTQSGRAVLVDLSNGSEVADHVTPYPHGVIDEILPTSGKPLEHDWALQHPDDYLEVLRCSVPAVLKQSGINPSDVIGLGIDFTACTMLPVDEQGVPLCLKPEWRDNPHGWVKLWKHHAAQDEADQLNAIAAERGERFLPRYGGKISSEWMIAKVWQIVNEAPDVYEATDLFTEAADWVISQLTGNFVRNSCTAGYKSIWHKQDGYPSKEFFKALDPRLENITETKLRGDIVPLGTKSGELTAAMAELTGLNAGTAIAVGNVDAHAAVPAVGVVTPGKLVMAMGTSICHMLLGTEEVEVEGMCGVVEDGIIPGYLGYEAGQSAVGDIFEWFVEEAVPAYVKEAAAADGVGVHQWLTERAGAYKPGETGLLALDWWNGNRSVLVDTNLTGVIVGYSLLTKPEEVYRTLLESTAFGTRKIIDAFHNNGVPVDEVYACGGLPQRNHLLMQIYADVTNREIKIADSKQTPAIGAAMFGAVAAGSAKGGYDNVVDAAKAMARVREETFKPIPANVAVYEKLYQEYSELHDYFGRGANDVMKRLKALKDEASH
>AP019400.1|BBI31725.1|1394470_1395175_+|L-ribulose-5-phosphate-4-epimerase
MLEQLKGVVCRANAELPKYGLVTFTWGNVSGFDRESGLMVIKPSGVPYEELKPEQMVVVNLDGDVVEGGMRPSSDTPTHLVLYRSFPNIGGIVHTHSPWATIWSQAGQGIPDLGTTQADYFYGTIPCTRAMTDEEIRGAYEAETGEVIVETFEGLNPDRVPGVLVNSHAPFAWGKDAMDALHNAVVLEEVAKMAYHTRQLNSGIPSMNRVLLDKHYLRKHGSNAYYGQPGDSKH
>AP019400.1|BBI31724.1|1393269_1394364_+|arabinose-metabolism-transcriptional-repressor
MNSQSPKYLQLKEEILSWLASGRYRPGDKLPSENELAEQYSLSRQTVRQSIGELVQEGWIAREQGKGTFVSKQSAERRNASGNRTVGVITTSISDYIFPSIVRGVESALKDKGYRLLLSSTDNRKERERESLEMMLSHSVCGLIVEPTKSAEGNPNFDNYLAIEDHGIPMLMINETYSDLDCQSVRVDDDAGGLMAANYMLELGHRQLAGFFKTDDYQGVRRMKGFIRACREHNLASEESTIVRYSTEDKGERPQAMLRELLQSDTPPTAIVCYNDQLAVSLLDTIRELGLRVPEDLSIIGYDDSFLATATETKLTTIEHPKSALGERAANLLIMQLEKGQAPTSKESLYPPKLIIRQSTREFR
>AP019400.1|BBI31723.1|1392503_1393169_+|phosphoglycolate-phosphatase
MTIKAVIFDFDGTLMDTETSAYDAYCGIYSEYGHTFALDAWAVGIGTQGNTFDPYADLERLTGNPVNRKELKERYLEAHEANIAKLVLLPGVLARLEEARKLGLMIGLASSSDRAWIERHLTKQGIREYFQVIKTSNDVERVKPDPALYRLVVEGLGVQPHEAMAFEDSLHGLSAAKAAGLFGIAVPNLVTAKMDFSAADLIMSSMEQRSLEEIIVLLDSK
>AP019400.1|BBI31722.1|1391513_1392467_+|putative-metal-ion-transporter-YfjQ
MLRIMAVTDNQELLEDVPLQSLMNDNIKWFWVDFDCPTETEILLLDSFFNFHPLAIEDCMHFLQRPKVDHYEETHFFVLHSLHPGTLKAEEVDFFLGPRGIVTFHLAPSQEVEEVWRKIHDPLVASGKDHNHVAYLILDKLVDNYFPTLYLIEDQLNELEVQEENNADIQVMTEQVYDIRASLLRIRRTVFPMRDLLYRIINSDKIVAVKGQLVYFTDIYDHLLKLTEMIESNREMTADLRDSYDSLRSNRMNSIMKTLTVMTTIFMPLTFIAGVYGMNFINMPELNWHAGYYIVIGIMLCLGLGMYLWFKKKGWFD
>AP019400.1|BBI31721.1|1390981_1391386_-|transcriptional-regulator-PerR
MRKAGAMTVQRKTIYDLLTAAQDHPTASDIIEKLKAGGHNFAYATVYNTLKYLTEEGLIQELKLEGDASRYDARTEDHHHIVCTTCGKVDEVFIETPSEWLQSIAKQTGYEITEEQYLFKGVCEGCRNAKKSAH
>AP019400.1|BBI31720.1|1390250_1391012_-|DNA-binding-response-regulator
MQEREEIRSLNETDIINNSMASPVALNEQGFCEITNRILIVSPRPASLRALVAELAEKCYDVLLLHHADDPLLSMVQGNIIVIDRTVESPSNVTNAWSGNGSSPVLALVHEIESVPPLGEEWVKWPCPIEELIAKIQQISLSISVPAISSEDSSHHTFKELVLDTGRMTVTHNGTKVDLTKTEYDLLRIIIAANGRVMTRQELMNEVWGEQYFGGSNAVDVHIRSLRSKLNDDPKDPRYIATVRGAGYRLADQ
>AP019400.1|BBI31719.1|1389561_1390119_-|peroxiredoxin
MSENITKIAKIGELAPLFDLPSTKNLDTLSENIRLEDYRGRWVMFFFWPYDFTTVCPTEIIAFNESVGTFRDLKCDIIGASVDSVYTHRAWMNTPRDQGGIGTIRYPMVSDFTKETARTYGVLDEKTGSAHRGLFIIDPEGIIRYQVVTDMNVGRSVEETIRILEALQSGGMCPIGWKKGDKTLG
>AP019400.1|BBI31729.1|1400070_1401099_+|LacI-family-transcriptional-regulator
MKRITIRDVSERAGVSTAAVSYVLNGREGKVSPDTILRVRRAAEELNYIPDFSARSLANNKSKLIGVVIPQTEEHKQLLLQNPFYSELICGIEARLRQSGYHMILSGVEKGEGYLDTSMQRNLDGAIIMGIYQESFYEDLKKARMPIVLIDSYVYDSHFHVVGIDDELGGYLATKHFIDNGHTNIALVTGMIRKDGVVEKRFLGYKRALKEAGLFYHPDHVFEHSVTYEFGQEAAKLIVAKYPEITAVFATSDLMAMGVMQGLRDEGKVVPQDVSVIGFDDITIARMCTPPLTTIMQDTINRGITAADRLLSAIHNPDGGLPQEPTIMPLTLVNRDTVRKLS
>AP019400.1|BBI31730.1|1401231_1402590_+|sugar-ABC-transporter-substrate-binding-protein
MLRKSGAILLVAIMIIISACGSNNNNKVESSPSATKSPEPSPSPSPTASESDSPSPSAKPVTIKLLTYTANGQEETLKAMVEAFQAKNQDVTVDYEVVPYADYDTKLTTLLASGSEPDIYEVGYENFRKYAAKDLLLDLSPIIAADTSFNPAIYKKLAYDAFNYNGKQMGVTESFSDVVLYYNKDLFDAKQMKYPDASWTWKEELEAAQKLTDPKAGVWGTYAPIQFYEFYKTIVQNGGGVFDASGNPTVNSPANVEALQWMIDKASKYKVSPALNDDTFNQPDADLNAFLAGKIAMVRFGIWNFGRFKDAPFKWDIALEPGNTQKAHHFFADGLVASKNTKQSDAVWRFLKFFTSDPDSVSKRIAAGWSVPAVADDAVMDAYYKQTPPESKKVVIEALDSLVLPPVGPKPEKWGELQTAVVEQLDKAKLGRITAQKALDNAQKSVEALLSK
>AP019400.1|BBI31731.1|1402816_1403710_+|sugar-ABC-transporter-permease
MVGQRKWNRRTAAFVFLLPAVLGLIAFQLLPMISSIFISFSDWDLLSKWTQIHFIGWTNYVEVFSNEKSYTSIKNVFIFLIGYMPVITLLGIMFAVLLNRNIRAIKLYRAAIFVPVITSWVAVSIVWRWLLNGQSGLINYALSKIGIEGPIWLQDDHWAMVAIIAVTIWKDIGFVSIILLAGLQDISEDYYEAANLDGASAWSKLIKITIPLLSPTLFFIITISLINSFQVFDQVLIMTNGGPAGATSTIVEQVYRNAFQFNKMGFAAAQSWVLFVIIFSVTMVMQWLQRRWVVYER
>AP019400.1|BBI31732.1|1403699_1404527_+|sugar-ABC-transporter-permease
MKDRGSLIKNALTHLFLIVASITLIFPFLWMLSGGFKDSLEVVKMPPQLLPSQWNFDNFIQIEKFFPLYRFLFNSVVIAIVTTVLQLLICAMAAYVFAKITFKGRQAIFVVFLTTMMIPAQVTLVPLFILFSQTNLIDTYAGLILPGIFSAYGTFLLRQNIMTIPNELLEAAFIDGASYYRVFGSIIMPLIKPTLAALTIFAFMSSWNSFLWPLIATNSKELMTLPLGLSKLQGKWSTEWNLLMAGNVISFLPIFAVYLFAQRYFIKGMTMTGIK
>AP019400.1|BBI31733.1|1404560_1405652_+|oxidoreductase
MKEIRLGLIGLGGMASVHAEQVEQISGAAITAICDRDSVKVAEWGTKLGIDEGSRYSDPEDLIKNAEIDAVLSITPNNVHYEIIRLCLIHDMPIMTEKPFTRTYEEAKALLELSEANNTTCMVGFSYRYTPSFRMAREMIRSGKIGQVRHVFFQYLQQWGGPLFDTKMNWRLDRSITGSGALGDLGSHMVDAARFLIGEPIEISSLMSSLITEREDPVTGNPVQVDIDDFAAFVAVLEQGIPAVFQTSRNAYGSQNQFEISVFGDTGSLQMGWEYGDTLKWVHPDEEGNQVREEINVPDEYRLKQLQDFIDLLRGTVREETATLRDGYLNQRALEAIEQAHLSKKAVKVADVGVTSDRVEVTG
>AP019400.1|BBI31734.1|1405660_1406383_+|trehalose-utilization-protein-ThuA
MTVWNEFRHERNNPQVTSVYPEGIHEALRSGLSAYGFTIGTATLDEPQHGLTEEVLNSTDVLIWWGHQAHDEVDDAIVQRVQDRVLNGMGLIVLHSGHYSKIFKRLMGTSCALKWREADEKERLWVVKPTHPIAAGLPEYFELEQEEMYGEFFDIPDPDELVLVSWFEGGEVFRSGVTYSRGLGKIFYFRPGHETYPTYYREPVVRVIANAVNWAADERGVAPFYGNAQPLEKISRKVNE
>AP019400.1|BBI31735.1|1406854_1410121_+|glycosyl-hydrolase-family-31
MKFRWKSRWMTVLLLALAMLIALPASVFAIDGVYHAPYGTDDLYEVQQTERYPRDPVAGDTVTVKLTTWPIEAGQATWITWTKNGVAQSVVNGAWKYNSGNNSYWEVNLGSFSKGDTISYTVHANKSGANEKTIGPFTFTVTGWESVASINSYTNATNHIVLNASPNTGTMSPKINIAFQADDVFRVQLSPKGTATLATGLSNYTFTDNTTYYLISTTALKIRIDKSPYKMSVYKPDGTTLIAREYDSAVNRNMAWLTDGSNIIDKVQNNLYSPTSEQFYGFGEHYNNFQKRGYDVDTYVYNQYKNQGSKTYMSIPFFVNTNGYGVYVNSTYYSKFKLATERSDMYNFTVNTGGGSTSMLDYYFVYGSDVKDVISNYSDLTSKPTMLPKWAFGLWMSANEWDRQSEVTTALSNASTNNIAATAVVLEQWSDENTFYIFNDATYTPKTGSAAFSYSDFTFGTKWPNPAQMATDIHNAGMKLVMWQVPIQKYTNYAYTQKDNDESYMISQGYAVGDGNSGQYRLPAGTWFENSLLLDFTSTNAKNWWMSKRAYLFDGVGIDGFKTDGGEMVWGRWLTFNNGKKGDEMRNQYPNDYVAAYNDYAHLKKADSVSFSRSGTSGAQKSQIFWAGDQESTFSAFRDAMHAGLTSSISGVPFWSWDLAGFTGDTFPSAELYKRSIEMAAFSPIMQFHSEKSDPSPSEERSPWNAASRTGDSTVLSTSRKVINTRMNLLPYLYSEAKKTSDTGIPLMRAMVVEYPGDTSTYGLTEQYMLGDSLLVAPIVNQGETNKSIYLPAGEWVDFWWGAMHPGNRTISYYAGVDDIPVLVKAGAILPMNLNGTYTVGGTIGNDLTNYTNLSFRIFPQGTTSYSWYDGSTTRTITSTEQYNLDKVTVSVPALTVASTIQVLTSKPTSVTKDGTGLTEYFSASSLSSASQGWYYDSAAKLAYVKISSGVSARSVVLNGVDKNAYEAEFGTLNAVSTNTNHTGYLGTGFVDGFETVGDYVELQVYAPSAGTYSIDVRYSAGGGAGSRAIYKNGTKVSDLSLSATANWDTWNTATLSTSLNAGLNTIKVQYDSGNSTGINLDNVGIRW
>AP019400.1|BBI31736.1|1410209_1414061_+|glycosyl-hydrolase-family-31
MIAYRGLLNKRFFMLVLVAMLALGLLPMGPSRTYAYAGALGNVLSSSVSGDTLTLTIDNGAEPNDDLLEIKVLSSSVAKVDYRPNSVAASNDTPMIDPNKTWSAVGATINTATSPITITTADMRIEIAKTPARVTVKKANGTLLFYEPSGGGIYYDGVRFIRGTSDNLYGIRSYNAFEDGGDLLRNDNSHGAHAGEQGDAGGPFIWSTAGYGILVDSDGGYPFTEAASGKMEFYYGGTPTEGRRYTKDDMEYYIMLGSPKEILASYAEITGKSPMLPKWSLGFSNFEWDTNETELTNSIDTYRAKNIPLDSVGLDYDWKKYGQDNYGEFAWNTSNFPSASTTALKTAMDGKGVKMIGITKPRIVTEDTPGHNTTQYVDANTGGYWYPGHSAYTDYFIPVKVRSIDPYNSAERTWYWNHSKDAFDKGIAGWWNDETDKVSAGGTTLWFGNFTTTHFSQAMYEGQRSYSSTNRVWQTARTFYPGAQRYATTLWSGDIGSQWSKGDKINWAAGMKEQRAVMLSSVNLGQPKWGMDTGGFNQQDGTINNPSPELYSRWIQFSAFTPVFRVHGNNHQQRQPWYYGNTAEESAKSAIQLRYSLIPYMYSYERSAYETGIGLIRPLMLDNPTDSSARNYLDAWMFGDWLLAAPVVDKQQTSKSIYLPSGTWIDYFRGTTYSGGTTISYPVNANTWSDIPLFVKKGAIIPTQKVLDYASQSAISTIGVDVFPDTAQSSFNYYDDDGTTYNYEGTGYFKQILTTQDNGGSGISFGVGAKSGTYSAPVMYYLAAIHGKAGSGVTIAGSSASSYASLNALKAAGGEGWAKGKDIYGDVTYVKVLAGSGTARNVVISGTASVTATAFQYEAEEASLSGNTNATKASVNTNHTGYEGSGFVEGFNNNGAAVTFYPSVAVGGDYPVDLKYANASGSSKLLSIFVNGKRVKQTTLANQANWNTWATQTETIPLEAGRNSVSYKYYADAGDTGNVNLDFIKVPFAPAVAKYEAESAKLTGGASINKDHWFYSGDAFVASMSALNAQTEFTVTAPSAGSYTLALRYANGNNATRTLTAYVNGTSAGAISMTSPGTNWNVWQDVTKTVTLSTGVNTVAFKYDSGNSGNVNLDRLLVAASTPGTPESETNLLDNSDFDRDGAYNSNWTEWHPAGQTLAYGVDSGSGSNPPESPWTQDKRSYFWLGTAYQQSIHQTVAVPVNNANYKFEAWVRMKNTNPTVARAEISSYGGSAQYYNISNDGVWKYISISNIFVTNGQIDIGFYVDSPGGTTLHIDDVRLTKQ
>AP019400.1|BBI31737.1|1414220_1415123_+|hypothetical-protein
MSIAIIGWMVGGAGALAGSAGAALYGLTVKAQRPRLVPNEVEPSVQYESVEWKSEGKTIKGWFLRQAAADHSTPGPVIIIAHGWGSNRSRVLRYALPLYKEGYSILMYDARSHGESEYYKTPTGLQFRDDLLAALDWLRTRPEADQARIGVLGHSLGGFGAVLALDVGAPIAALVTDSMPVKFATMIGSELRRKKLPQFPLAQLLPWMMIMRSRIPRSMMKRANPARILMDNASDRQTPVLLIHSRKDRFIPPTELSHMLSRAPNLPHLFVNAEGHSASERDPAFWPAVTSFFESGLQKK
>AP019400.1|BBI31738.1|1415436_1415775_+|transcriptional-regulator
MKISGMDITTLSALAETNRMNIVQLLRDGPLAVGEISDRLGIRQPQASKHLKVLSEGGIVEVRIDANRRIYALRSEPFQAMEFWLQSFGHIMEDRFDNLDNYLRELQNKEKP

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Crispr_ID: AP019400_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_8

2010763-2011523

Orphan

Consensus_repeat	Method
CCCCAGTNGNNGNAATTAGTCG	CRT
CCGTCTCAAACGAGCACCAGTAGCAGCAATTAGTCGACCACCCCGC	PILER-CR

14 spacers

DEDDh

The CRISPR arrays of AP019400_8

>merge|AP019400|8|2010763-2011523|CRT,PILER-CR
CTCCAGTGGACGGAATTGGTCGTAGTCGCCGCTTAACTCTGCCTCGAGCGTGCCCCAGTGGACGGAATTAGTCGTAGTCGCCGCGTAACTCTGTCTCAAACGTGCCCCAGTGGACGGAATTAGTCGGAGTCGCCGCGTAACTCCACCTCAAGCATACCCCAGTAGTAGTAATTAGTCGGTCCCCCCGCGCAACTCCGGCTCAAACATGCGCCAGTAGCAGCAATTAGTCGGAGTCGCCGCGTAACTCTGTCTCGAGCGTACCCCAGTAGCATGAATTAGTCGGAGTCGCGGCGTAACTCTGTCTCAAACGTGCCCCAGTGGACGGAATTAGTCGTAGTCGCGGCGTAACTCTGTCTCACACGTGCCCCAGTGGACGGAATTAGTCGGAGTCGCCGCGTAACTCTATCGCAAACGTGCTCCAGTGGACGGAATTAGTCGTAGTCGCGGCGTAACTCTGTCTCAAACGTGCCCCAGTGGACGGAATTAGTCTGCCACGCCGCGTAACTTTGTCTCGAGCGTACCCCAGTAGCATGAATTAGTCGGTCCCCCCGCGCAACTCCTGCTCAAACATACCCCAGTAGCAGCAATTAGTCGTAGTCGCCGCGTAACTCCGTCTCAAACGAGCACCAGTAAGCAGCAATTAGTCTGCCACCCCGCTTAACTCTGCCTCGAGCGTACCCCAGTAGCAGCAATTAGTCGTAGTCGCGGCGTAACTCCGTCTCAAACGAGCACCAGTAGCAGCAATTAGTCGACCACGCCGC

>AP019400|8|2|2010763-2011513|CRT
CTCCAGTGGACGGAATTGGTCG	TAGTCGCCGCTTAACTCTGCCTCGAGCGTG
CCCCAGTGGACGGAATTAGTCG	TAGTCGCCGCGTAACTCTGTCTCAAACGTG
CCCCAGTGGACGGAATTAGTCG	GAGTCGCCGCGTAACTCCACCTCAAGCATA
CCCCAGTAGTAGTAATTAGTCG	GTCCCCCCGCGCAACTCCGGCTCAAACATG
CGCCAGTAGCAGCAATTAGTCG	GAGTCGCCGCGTAACTCTGTCTCGAGCGTA
CCCCAGTAGCATGAATTAGTCG	GAGTCGCGGCGTAACTCTGTCTCAAACGTG
CCCCAGTGGACGGAATTAGTCG	TAGTCGCGGCGTAACTCTGTCTCACACGTG
CCCCAGTGGACGGAATTAGTCG	GAGTCGCCGCGTAACTCTATCGCAAACGTG
CTCCAGTGGACGGAATTAGTCG	TAGTCGCGGCGTAACTCTGTCTCAAACGTG
CCCCAGTGGACGGAATTAGTCT	GCCACGCCGCGTAACTTTGTCTCGAGCGTA
CCCCAGTAGCATGAATTAGTCG	GTCCCCCCGCGCAACTCCTGCTCAAACATA
CCCCAGTAGCAGCAATTAGTCG	TAGTCGCCGCGTAACTCCGTCTCAAACGAGC
ACCAGTAAGCAGCAATTAGTCT	GCCACCCCGCTTAACTCTGCCTCGAGCGTA
CCCCAGTAGCAGCAATTAGTCG	TAGTCGCGGCGTAACTCCGTCTCAAACGAG
CACCAGTAGCAGCAATTAGTCG

>AP019400|8|3|2011373-2011523|PILER-CR
CCGTCTCAAACGAGCACCAGTAAGCAGCAATTAGTCTGCCACCCCGC	TTAACTCTGCCTCGAGCGTACC
CCAGTAGCAGCAATTAGTCGTAGTCGCGGCGTAACTCCGTCTCAAAC	GAGCACCAGTAGCAGC
AATTAGTCGACCACGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI32272.1\|2000258_2000867_-\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
AP019400.1\|BBI32281.1\|2013650_2014217_+\|FMN-reductase-(NADPH)	unknown	unknown	gnl\|CDD\|274653
AP019400.1\|BBI32279.1\|2011645_2012473_+\|lipase	unknown	unknown	gnl\|CDD\|238287
AP019400.1\|BBI32273.1\|2001026_2005523_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227779
AP019400.1\|BBI32274.1\|2005732_2006512_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
AP019400.1\|BBI32277.1\|2008430_2009096_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32284.1\|2016758_2017715_+\|N-methyltryptophan-oxidase	unknown	unknown	gnl\|CDD\|236887
AP019400.1\|BBI32282.1\|2014589_2015342_+\|L-cystine-import-ATP-binding-protein-TcyC	unknown	unknown	gnl\|CDD\|224051
AP019400.1\|BBI32278.1\|2009252_2010680_+\|putative-sulfate-transporter-YbaR	unknown	unknown	gnl\|CDD\|223732
AP019400.1\|BBI32288.1\|2020329_2021298_+\|transporter	unknown	unknown	gnl\|CDD\|223769
AP019400.1\|BBI32283.1\|2015394_2016558_+\|hydrolase	unknown	unknown	gnl\|CDD\|349919
AP019400.1\|BBI32269.1\|1995408_1995690_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32286.1\|2018260_2018797_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366181
AP019400.1\|BBI32285.1\|2017728_2018223_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378981
AP019400.1\|BBI32275.1\|2006514_2007513_+\|histidinol-phosphatase	unknown	unknown	gnl\|CDD\|180677
AP019400.1\|BBI32287.1\|2018815_2020135_+\|monooxygenase	unknown	unknown	gnl\|CDD\|274819
AP019400.1\|BBI32276.1\|2007509_2008289_+\|transporter	unknown	unknown	gnl\|CDD\|224204
AP019400.1\|BBI32270.1\|1995940_1998283_+\|DNA-helicase	unknown	unknown	gnl\|CDD\|226482
AP019400.1\|BBI32271.1\|1998353_2000168_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
AP019400.1\|BBI32280.1\|2012695_2013619_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI32272.1\|2000258_2000867_-\|hypothetical-protein	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	3.52054e-49
AP019400.1\|BBI32281.1\|2013650_2014217_+\|FMN-reductase-(NADPH)	gnl\|CDD\|274653	TIGR03567, FMN_reductase_NADPH, FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566). [Central intermediary metabolism, Sulfur metabolism].	2.8317e-73
AP019400.1\|BBI32279.1\|2011645_2012473_+\|lipase	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	9.66661e-44
AP019400.1\|BBI32273.1\|2001026_2005523_+\|hypothetical-protein	gnl\|CDD\|227779	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion].	3.70926e-09
AP019400.1\|BBI32274.1\|2005732_2006512_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	4.93288e-81
AP019400.1\|BBI32278.1\|2009252_2010680_+\|putative-sulfate-transporter-YbaR	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.59987e-123
AP019400.1\|BBI32284.1\|2016758_2017715_+\|N-methyltryptophan-oxidase	gnl\|CDD\|236887	PRK11259, solA, N-methyl-L-tryptophan oxidase.	1.0062e-114
AP019400.1\|BBI32282.1\|2014589_2015342_+\|L-cystine-import-ATP-binding-protein-TcyC	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.14061e-152
AP019400.1\|BBI32288.1\|2020329_2021298_+\|transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	5.95718e-16
AP019400.1\|BBI32283.1\|2015394_2016558_+\|hydrolase	gnl\|CDD\|349919	cd05669, M20_Acy1_YxeP-like, M20 Peptidase aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2. Peptidase M20 family, aminoacyclase-1 YxeP-like subfamily including YxeP, YtnL, YjiB and HipO2, most of which have not been well characterized to date. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney suggest a role of the enzyme in amino acid metabolism of these organs.	0
AP019400.1\|BBI32276.1\|2007509_2008289_+\|transporter	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	2.96764e-56
AP019400.1\|BBI32286.1\|2018260_2018797_+\|hypothetical-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.03005e-12
AP019400.1\|BBI32285.1\|2017728_2018223_+\|hypothetical-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	6.7085e-13
AP019400.1\|BBI32275.1\|2006514_2007513_+\|histidinol-phosphatase	gnl\|CDD\|180677	PRK06740, PRK06740, histidinol phosphate phosphatase domain-containing protein.	7.88415e-150
AP019400.1\|BBI32280.1\|2012695_2013619_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.41882e-53
AP019400.1\|BBI32270.1\|1995940_1998283_+\|DNA-helicase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	2.41267e-164
AP019400.1\|BBI32271.1\|1998353_2000168_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
AP019400.1\|BBI32287.1\|2018815_2020135_+\|monooxygenase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0

>AP019400.1|BBI32278.1|2009252_2010680_+|putative-sulfate-transporter-YbaR
MLERIRFNWFSNVRADVLAGITTVLALIPDSLAFAFIAGVNPMISIYSTISILVLISIFGGRPAMVSSTAGSMAVLMTALVAQHGVEYLFAATILTGVIQLGMGLLKMGRWMSFVPHSVITGFINSLAILIFVSQLRYFEGQSWMMYAMVAATLAIIYILPKFTKAVPSPLVAVAFMTIVVVFMQLNLSTVGSLANIEPTIPFLHIPSIPFTLDTLWILLPTSLSLAIVGYSETLLTQTIIDEMTEEKTSKDKEMRGQGIANTVTGFFGGMAGCALIAESAINVKVGGRGRLSTLVAGLVLFILVFVLDDVLNSIPIAALVGVMMMVCIEIFDWNYFRNIRSKPVAHTAIMLITVAIVVVTRDLAIGVIVGVILSVLVYAYRSATQLEIHEELDGDEKIYRVRGQLFFVSSDTLLDRIDFNDDNDKVCLDLTATHVWDHTAAKTLDKIVDRLKSKGKDVRVLHQVSKPKLGIKSS
>AP019400.1|BBI32277.1|2008430_2009096_+|hypothetical-protein
MNQTITINKKEIAVSFTNYFDSELGEFLFKQVMCDVYMPGNEVVPIAVEKEQIKRVVEGFKNRPELHDEIPKENIKGKSYYVINTRMRHDLDWLKGNKPERPISLAEHEKLKADEARGIKPAAVKPVETIEPSEPEPVELKAPEYTDNRRKFLLAKGFKHNLATNNWEIKDIRFPDSKIDKSNSDEEFADGMNRLLDASYQNHLKRKAKPAAKTNESKASE
>AP019400.1|BBI32276.1|2007509_2008289_+|transporter
MRLTMTITPGIWEISHVELTIRIVCALVIGGLIGLEREWGDHAAGFRTHILVCLGSALIMLLSIYGFSQFAYEANVRMDPARLAAQVISGIGFLGAGTILRTGMSISGLTTAASLWVVAALGLAVGAGFYYGALLTASLVLINLFFLNKLEKLFTRKRKIIEAKLTMKDSSGQLQLVMGKIEHYGAAIISITADSIKQDKEEPLLQLNLKLKVEKFKKIPQLLDDLRLLDGVSQISYQLVDAKVHKTAKASKKESNAQF
>AP019400.1|BBI32275.1|2006514_2007513_+|histidinol-phosphatase
MKVDFHFHLEEGPYSFGWLQRTARALEIVPQEMKTSSERNTLPWMEHTLDRLKLRLEEGCFSERWLEAYFVQGQKKGIQRFGMVDHLYRFDEFRDYYEKYILMDDSELGRLQRYWYDRVRIGSIDDFLNAARKMQAKGYPLSIGVEADYFPGGEAELKELLDKYELDYVIGSVHFLNGWGFDNPETKETYESKDLLDLYKHLFEHVKSAANSGLFDIIAHLDNLKVFNYRPDEQAMIGLYDDVAAALKKANVASEINTGLAYRYPVKEMCPSPTFLSKLYEHGVPITLSSDSHYPDDIGTLLDEAIVLAKQTGYKEIVYFEKGKRISSPLED
>AP019400.1|BBI32274.1|2005732_2006512_+|DeoR-family-transcriptional-regulator
MSLSFEKRKKKILEYLSREGKVEVVILADEFNVSTETIRRDLERLDSEGKLKKIYGGAIKVRADSLELPFDQKTLINANEKAAIGKYAASMINNGDTVMLGNGTTTMEIIRNLATHKDVTIVTHSAPAMLLAMEIFPGRIIFIGGEVNKHQQTTSGPLSDMMLNQLRVNKTFISAGGVSLLDGITDYELSEATISRKMMDRADETIFLADSTKFGKATFANICSLDDVYTVISDSQCTDEWKQYMKDRDITILIADKED
>AP019400.1|BBI32273.1|2001026_2005523_+|hypothetical-protein
MNHFSQKSMSLLLSVAVLVGTLFTGTAATAAPTAPSPTAVPGTPYDENGVYDVTVPHVIINQVYGAGLVADIGNEYFTHGFIELYNPTNIDISLNGWSIHYADRGSNAISGPTGDWMKLTLDSAAVIKAHSSYLITGAPTGATPPPKIDLSISDKQWSDRYINNKGLKVVLTSNSADLIGKNPFLTKSAAYVDMLGTAANETKNETDIDGYEGIQYSNSYPKGDGGPSKKKALRRVNFIDTDNNAADFVPVNYEDAIKLANSALLASIKPRKGADNAWFVPLGISNITLPAAAIGTAYSYSVAGSVYGGHSPYDISVSGLPAGLSYSNGKIIGSPSVGTSGTVTAVLQVTDSQSVSVSKALTLAVAQAIDNLVITSTSLPTATIGQPYLVNVSVTGGNAPLTFTATGLPSGLTIDAATGLITGIPAEGKAGTIKVKVTVTDNASFVKTADLPLTVSPAVINYVDTLNVTKIGGYSVGTTNADGGVAEIVKFNKDNGKFYLVNGSTTPPTLDIVSLTTSSTLTKDKSINVQELSERGGNFTYGDLTSVDINTTVKRISVSVQEKDYSKPGKILVLDYEGNLIKSYNAGVQPDMIKTTPDGRYILTADEGEPRLGSGNGIVDPEGSITIVDTVTDSVSLVKFNNPAVIDDDVHVRGPAGADGMITTKGTKADAIRDFEPEYIALSGDYKKAYVSLQENNAIATIDIVNKVVVSVKSLGFKDFNQTKNVLDLVKDGAIKLENVPFKGMYMPDGIATHTINGKTYLFTANEGDATEWPVEKPFTRTSATTVGAIKGKLDPDSEAAKFLADKAKIYDKVEVLSDMGTDSIYMYGGRSFSIWDIDTWSQIYDSGSDFERITADRHAQYFNAGHNNLELDSRSSKKGPEPEDIKTGKVGSRTFAFVGLERIGGIMTYDVTDPANATFANYINTREFNSSNVLGTDTGPEGIDFIPAVDSPTGLPLLLVAYEVGGTVAVLQLNVTKVELDKKVISTKVGNASTKIIPTVTPVGGGAATVTWTSSDKAVATVDVNGNVTPVSAGKATITALSADGYGEAQANVTVTAATNGSGPGAGNPGTGNSGNGNTETPKPPVTSGEVTKAVVEIKATKDKSGAAEATFTAKQIAEILEALNKAAANGKTAILELKAIGTGDATQTNIHIAGDSLAQIIASQVSEVALDGSIGSVTLDKTALSSVLAASGKDEVIITIKKTDASLVTKDLSQASKDAIAAAIGTKPVFDLTVKAGGKQITTFGGGWVTVSAPYTPSASEDVHAIVIYYISDLGELIMVPNGVYDSATGKVTFNVKHFSKYAVGYNKLSFGDTGSSFAKDFITYLSARNIIGGVGDNKFAPTNRITRADITVILARMAGADLNKYTGSSFSDVDTGAYYSKSVEWAVEQGIASGIGSGLYNPKAYVTREQLVTMIARYAAVMKFKLPNHVEAISFSDQSKVPAYAVSALKAVQQAGIISGKASAGQSGIFFAPKDNATREEAAKILATLMQIMNK
>AP019400.1|BBI32272.1|2000258_2000867_-|hypothetical-protein
MKLDNITVLDFETSGLDPARDRVIEMAAIRCYGGEIVSQFNTLIRFDGNLPPKITEITGITSADLVNGMDEETAFRILNRLIGDSTIVAHNAMFDLSFLHHTLLRLANRSFNNSFLDTLTISRARHTYPHNLKEMCNRYGIELEGAHRSLNDVYACWKLLEKMNEEQSVEKDLNVLGYMKKYGVPKWYPQHASIVPIEIKYA
>AP019400.1|BBI32271.1|1998353_2000168_+|ATP-dependent-DNA-helicase-RecQ
MNSAAIEALRTYYGYDQFRAGQNTLIEAILEGKDVLGIMPTGAGKSICYQIPAILLPGVTLVVSPLISLMKDQVDALNSAGIEATFINSSLSVKETNERMRHVAAGHYKLLYVAPERLESEYFREMVRQLEIPLIAVDEAHCVSQWGHDFRPSYMTITSLLRDIEPRPVMAAFTATATDVVKDDIVGRLRLREPVRVTTGYARDNLALTVVRNADKRDYVARFIQAHPDQAGIIYASTRREVESVFSFIHSLKIPVGKYHAGLPEEERAQTQDAFQKDDVQIIVATNAFGMGIDKSNVRFVIHNNMPKNLEAYYQEAGRAGRDGDPGECVLLFSPQDVVTQKFFIDQSEAGEERKKNDYRLLNEMVQFAHTEDCLQQTIVTYFGEQDSKPCGTCANCTDSRELKDVTEEAKYIFACVSEMKQRFGITLTAKVLRGANDAKIRQFNFDRLRTYGLLKHIPEKQLTQLIHAFVADGYLRMSDTAYPVIQLTEKVLDVMKGKELVHRRIEPEAPAVTRSSKSRYGSGSSTSSDAVTNTELFNALRQLRKRIADAENMPPFVIFHDATLREMCQQMPRTENAMRAVKGIGDAKYTKYGHAFLELIKQY
>AP019400.1|BBI32270.1|1995940_1998283_+|DNA-helicase
MSSNQTPRDEEEKRLLTVLEQVSRRMRKEMALLGDRRGDVVGIRQEFWDDVRMNFSDSTEVGETWSSIVQQAELLAERERSHRVASEAVERLTKQFDSPYFARIDFAETGMESEIIYIGRASLVGEDGETFYVYDWRAPVSSLFYDQEPGPAAYRVPDGKMEGELQLKRQFVIRGGQLKLMFDTSETVGDEILQAVLSEGSDTSMKSIVATIQKEQNWIIRDEKHKLLVVQGAAGSGKTSAALQRIAYLLYRYRETLGPDQIILFSPNPVFKGYISNVLPDLGEANMRQMTFRELIEARLGRRFEVEDLFSQTEALAAADGTAEGEARESSVRYKGSEHFFITVENYLKRLELDGARFRPLRFRSMTIVSAEEMSQQFYGIRAADGFGNRAAGLRRWLLERLRTWIDSQMNEPWLEEAAELVDSEDIQRAYVDVRRSGGFHEEVFDDEEQMSIRLRRRVAEETLAPLIKAVRSYRFLDAVATYRELFESRTLFTACSPDGKLPTGWEWMLQRVEETMGRKVIDHEDATPLMYVSEALEGFRRVEGDIQHVFVDEAQDYSPFQAAYLRRRYPRARMTVLGDFNQAIYIQSQANGGFGGWTRLMAPEATSVLRLTTSYRSTEPIVEYTKGILAAEDAVGIIPFHRKGEAPRVIACKDNGQLSEQIAASINELLAQGYGTIGVISKTAYESGNASALLKELLPDDVPVTLVTGGSAELPKGVSVLPSYLAKGIEFDAVLVWDASEVRYGKEKDRKLLYTVCTRALHILYIFHTGTVSPWLPKP
>AP019400.1|BBI32269.1|1995408_1995690_+|hypothetical-protein
MIVQWTETARLRFQQIKSDHYTQQETIEYKINLIRRVEEKVVSMGTIMPSREYRNTYYCLVDRYVVSYKALDQGERYLITSFKHGAMKRNLKY
>AP019400.1|BBI32279.1|2011645_2012473_+|lipase
MANSGFDNRTAIFLASVCSQTYAQFNNPDGYFVVPAYYEVVSTFRANSLAGAAEKFGFIIQSASDIIVAFRGTSSTTDWIANAIASQSKYKCVKGAGQTHRGMSSIYYSARNQILGVLNKLDSSKALFITGHSLGGALATLCGLDVAVNSPFRNPVVYTFGSPRVGDPTFAKAFSGEVQHSYRVNNRFDVVTHLPPQVYSPPKSDATYHYMHVRNSEPLSFNNGSVPNNHIISSYYSELSKQSPLYSEELSIRNPGLCPVTDRMYPLGLGQFGTF
>AP019400.1|BBI32280.1|2012695_2013619_+|LysR-family-transcriptional-regulator
MNEGGFFVNIENIEAFVYVVYCGSFNKAAEALYLSQPSVTARIQSLERGLDCKLFDRQAKQVQITEEGKRFLPFAQQLLLTYQKGKYQVNQKKSPPEEFRIGCTVSVSNYIFPELIVRLKSKFPNTNYRIVTGITDEIVSKVLNKEVDIGFVRNVTHPSLQSIKFYEDPISLYVYEGHPFLLNERLTVEEIAKEPLVFFQCGALDWFRIHRLFENLDQPPNIQVQTDNSEMAKKLVIQKVGISFLPSVCVQQEVAEGKLFPIHVPETDGITMQTNIVIGHGEHSQYLNTIIETGKELIINRLAPASK
>AP019400.1|BBI32281.1|2013650_2014217_+|FMN-reductase-(NADPH)
MSHIVIISGSPTPGSRLNGLIDHVESKSAEKGIKISHIRVSELPAEALLHANFKDEQILAALALVESASGVVIASPVYKASFTGILKAFLDLLPQTGLKGKVTLPLFIGGTIAHLLALDYALKPVLSVLGSRNILGGVYAIDQWIERRDGGGFELSEELQERLDRSVEELSEEINWLEIRSKDTAVNS
>AP019400.1|BBI32282.1|2014589_2015342_+|L-cystine-import-ATP-binding-protein-TcyC
MIKLTNISKSFGRNQVLNRINLKVDKGEVVAILGPSGSGKTTLLRCINYLEKPNDGEISIDDFSVNCRRPAKKDIHALRQKTAMVFQNYNLFRHKTALENVMEGLVIVKRLSKEEARKKSVELLEKVGLGNKLDSYPSQLSGGQQQRVGIARALALNPEVILFDEPTSALDPELVGEVLSVIRKIAKEGITMIIVTHEMGFAQDVASHVVFMDQGFIVEEGPPKVIFQAPKEERTKQFLARITPESSYSI
>AP019400.1|BBI32283.1|2015394_2016558_+|hydrolase
MGSLTTEQFEEQLVAFRRHLHANPELSHEEFETTSTIRTWLTEAGIRIAEYPLKTGVIAEVGGLQEGPIIAIRADIDALPIHEETGLAFASRVPGKMHACGHDLHTAIVLGAAILLKRREHELKGTVRFIFQPAEEKAKGASLVINSGALEGVKAVFGLHNKPNLPVGTIGIKPGPIMAAADGFIVEVEGRGTHAAVPEAGIDPIVTSAHIITALQSIVSRNVSALDSAVVSVTRLNSGTAWNVIADKAVFDGTLRTFDEGVRFRVRERFEQIVVGVGQALGAEANVKWLEGPPAVVNDSRWAEQATRTAESIGLQVVEPTPSSAGEDFAFYLQETPGSFFFLGTSGPQEWHHPAFDVDERALPIGASFFASLAVDALYQLSETKKL
>AP019400.1|BBI32284.1|2016758_2017715_+|N-methyltryptophan-oxidase
MKLALRADELWRELEEATGEKLLERAGVLSITDPAIYSYESRFQVAADHGVFIEDLSAQQIKERWPAVQVGEHHRAMYEPYAGYLYSEKCISTYKKEALQAGATLLTNTFVTKIEPEKSSVTVSTATDSFIANKVILSAGAWFKTLEPFVQLPIRAVRKVVGWFEPSHHSFNAGQFPGFTLETSNGGYYGFPSIGGAGIKIGRHETGVEWQPGEKLAPFGTYPEDEGDLRGALDAFLPGAAGKLLRSAVCKYEFTPDDSFIIDTHPEYSNVLLAGGFSGHGFKFASVVGEILANQIELGKWGQDVGLFSATRFTQPAK
>AP019400.1|BBI32285.1|2017728_2018223_+|hypothetical-protein
MSQSIVDIDTYLYTYEQLLAAIEGLTDSQLKWKATDAQWSVTEVLAHLADHNIIVSFRIREILANSEARLPAFSQDPWVAGQKSNEGNASDILEIFRSLLLYNSLLFRRLSSEEWSKTGVNFKGETVTLEAIILAFIAHVQVHLAQIDRIKKGEISSQNSSCTI
>AP019400.1|BBI32286.1|2018260_2018797_+|hypothetical-protein
MPDKKVVIRKAEDSDHEAIIGVLLDAYEQYERTFSAERWTQYKTSILQSIEATTTKERLVAELDGEIIGSVFIYDSSETAYGDNPKLDIHNPVIRLLGVSQKARGHGVATELIRASAKLSLEWGADQLHLHTSDMMDSAVRLYEHLGFERDYDKQFMSGDLLVKSYRLILRETSLLNA
>AP019400.1|BBI32287.1|2018815_2020135_+|monooxygenase
MAKRSIKLGALVHGVGGNVSGWRHPEVLPDASVNFSYYKEQVQLAESGKFDLVFIADGLYITEKSIPHFLNRFEPITLLSALASVTSKIGLVGTLSSSYSDPFTVARQFSSLDHLSGGRAGWNLVTSPLEGSAKNFGKTEHPTHDERYKIAEEHLEVTRGLWDSWEDDAFVRDKETGVFFDPSKLHRLDHKGAYFNVQGPLNIARSKQGQPVVFQAGSSESGKKLAGKGADAVFTGHENIEEAKAFYADVKARAVANGRSANDIVILPGIAPIIGKTQEEVERKYEEIASLVNIQNALDYLGRFFDHHDFSQYPLDEPFPELGELGSNSFRSGTDKIKKTAKEQGLTLRQVALQSATPRGQFIGTPENIADLIQKWHEEEAGDGFIVYSALPSILRDFVELVIPILQERGIYRTEYESDTLRGNLGLPIPANRYTAVKT
>AP019400.1|BBI32288.1|2020329_2021298_+|transporter
MKTMTEKIFTHPLGIIAAAAGATFLWGSAFPFVKLSYAELNIGKEDVFEQILFAGYRFVLASILILVLMKLIGKKVAYQRGTLLKVGRIGLFQTLLQYVLFSYGISSTTGVQGSIIAGTTSFFQIILAHYMYASDKISLRKMIGLVVGFAGVILVGISKGSLTLHFGLAEICLLLAMFFGALGNVMSKKESEHLEVLYMTSYQMLLGGLAIMAIGASGAGLLPFEMTWSTTWMLLYLACISALGFVVWNTVMKYNKVGSISMYLFLIPVFGVFLSGAMLGEELHMFVWAALVLVVSGIVIVNGKRTKAPTAGSETPGQELTQ

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Crispr_ID: AP019400_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_9

2133696-2133833

Orphan

Consensus_repeat	Method
TATAGCCGTCCTAAGGATGGCAAAGCCGTTTTACTTGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_9

>merge|AP019400|9|2133696-2133833|CRISPRCasFinder
TATAGCCGTCCTAAGGATGGCAAAGCCGTTTTACTTGTACTATCAGAAAGTATAAAGTTCTAAGTCTTAATACTCATCTGATAGCTCGATACAAACGTATATAGCCGTCCTAAGGACGGCAAAGCCGTTTTACTTGTA

>AP019400|9|6|2133696-2133833|CRISPRCasFinder
TATAGCCGTCCTAAGGATGGCAAAGCCGTTTTACTTGTA	CTATCAGAAAGTATAAAGTTCTAAGTCTTAATACTCATCTGATAGCTCGATACAAACGTA
TATAGCCGTCCTAAGGACGGCAAAGCCGTTTTACTTGTA

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI32411.1\|2135361_2135568_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32401.1\|2126819_2127128_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|289729
AP019400.1\|BBI32409.1\|2134157_2134658_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378904
AP019400.1\|BBI32405.1\|2130415_2131456_-\|glycine/betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270278
AP019400.1\|BBI32414.1\|2139247_2140720_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225177
AP019400.1\|BBI32406.1\|2131481_2132249_-\|taurine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
AP019400.1\|BBI32403.1\|2128626_2129271_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372652
AP019400.1\|BBI32400.1\|2126063_2126624_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32402.1\|2127622_2128240_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32408.1\|2133931_2134165_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378536
AP019400.1\|BBI32412.1\|2136158_2138426_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|185053
AP019400.1\|BBI32413.1\|2138718_2139219_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32415.1\|2140828_2142268_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32399.1\|2124822_2125857_+\|sporulation-integral-membrane-protein-YtvI	unknown	unknown	gnl\|CDD\|274334
AP019400.1\|BBI32398.1\|2123431_2124787_+\|membrane-protein	unknown	unknown	gnl\|CDD\|224173
AP019400.1\|BBI32417.1\|2143216_2143960_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373047
AP019400.1\|BBI32416.1\|2142460_2143126_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
AP019400.1\|BBI32407.1\|2132300_2133437_-\|alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
AP019400.1\|BBI32404.1\|2129593_2130403_-\|nitrate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
AP019400.1\|BBI32410.1\|2134673_2135243_+\|protein-CotJC	unknown	unknown	gnl\|CDD\|252986

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI32401.1\|2126819_2127128_-\|hypothetical-protein	gnl\|CDD\|289729	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862). Structure 3D4E shared structural similarity to beta-lactamase inhibitory proteins (BLIP) which already include 1XXM, 1S0W, 1JTG, 2G2U, 2G2W, 2B5R, and 3due. All of structures are involved in beta-lactamase inhibitor complex. (REF http://www.topsan.org/Proteins/JCSG/3d4e).	5.23207e-07
AP019400.1\|BBI32409.1\|2134157_2134658_+\|hypothetical-protein	gnl\|CDD\|378904	pfam12652, CotJB, CotJB protein. CotJ is a sigma E-controlled operon involved in the spore coat of Bacillus subtilis. This protein has been identified as a spore coat protein.	1.0737e-28
AP019400.1\|BBI32405.1\|2130415_2131456_-\|glycine/betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270278	cd13560, PBP2_taurine, Taurine-binding periplasmic protein; the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.49066e-99
AP019400.1\|BBI32414.1\|2139247_2140720_+\|membrane-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	4.20171e-72
AP019400.1\|BBI32406.1\|2131481_2132249_-\|taurine-ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.10216e-65
AP019400.1\|BBI32403.1\|2128626_2129271_+\|hypothetical-protein	gnl\|CDD\|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	7.28304e-08
AP019400.1\|BBI32404.1\|2129593_2130403_-\|nitrate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.50304e-111
AP019400.1\|BBI32408.1\|2133931_2134165_+\|hypothetical-protein	gnl\|CDD\|378536	pfam11007, CotJA, Spore coat associated protein JA (CotJA). CotJA is part of the CotJ operon which contains CotJA and CotJC. The operon encodes spore coat proteins. Interaction of CotJA with CotJC is required for the assembly of both CotJA and CotJC into the spore coat.	6.52124e-08
AP019400.1\|BBI32412.1\|2136158_2138426_+\|glycosyl-hydrolase	gnl\|CDD\|185053	PRK15098, PRK15098, beta-glucosidase BglX.	8.53462e-123
AP019400.1\|BBI32399.1\|2124822_2125857_+\|sporulation-integral-membrane-protein-YtvI	gnl\|CDD\|274334	TIGR02872, UPF0118_membrane_protein_YtvI, sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein. [Cellular processes, Sporulation and germination].	7.1964e-65
AP019400.1\|BBI32398.1\|2123431_2124787_+\|membrane-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.56612e-137
AP019400.1\|BBI32417.1\|2143216_2143960_+\|hypothetical-protein	gnl\|CDD\|373047	pfam14398, ATPgrasp_YheCD, YheC/D like ATP-grasp. A member of the ATP-grasp fold predicted to be involved in the modification/biosynthesis of spore-wall and capsular proteins.	7.5659e-60
AP019400.1\|BBI32416.1\|2142460_2143126_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.06784e-51
AP019400.1\|BBI32407.1\|2132300_2133437_-\|alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
AP019400.1\|BBI32410.1\|2134673_2135243_+\|protein-CotJC	gnl\|CDD\|252986	pfam05067, Mn_catalase, Manganese containing catalase. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.	2.92083e-84

>AP019400.1|BBI32407.1|2132300_2133437_-|alkanesulfonate-monooxygenase
MELFWFIPSYGDGRHIGTNHGARAITPAYLRQVALAADDLGYEGVLLPTGRACEDAWVLASTLIPITRKLKFLVAVRPGLMSPTLAARMASTFDRASEGRLLVNVVTGGDPEELEGDGVYLDHSSRYALTEEFLHIWRSTLSGEAVDFEGKHLQVTGARIFYPPVQAPHPPLFFGGSSPAGIEVAVNHCDVYLTWGEPPEKVKQKIDDVRRQAEIRGKKLRFGIRLHIIVRETEQEAWEAADNLIRYLDDDTIAKAQKVYARMDSHGQRRMADLHGGDRSNLVISPNLWAGIGLARGGAGTALVGSAEQVAERIKEYADLGIETFILSGYPHLEEAHRVAELLFPLLPRKSSTSPTKEQATQNALGEIVAYEHFPKAN
>AP019400.1|BBI32406.1|2131481_2132249_-|taurine-ABC-transporter-permease
MNTRNLGISLLAVIIAFSAWWIVSVSGAVSHLFLPTPVAVWKAFLEVINEGYKGSPLVTHIGESLKRLAIAFAIALLTAIPIGMLSGYFAKVRAFVDPFIEFYRPLPPLAYYTILVLWLGIGDSSKIALLALAAFAPLYLAVVSGVSKVPKDRINGARSLGAKDWDIFVHVIFPSTLPDLFTGIRTSIGMTYTTLVAAEMVAAVSGMGWMVLDASKFLRSDIIFVGIILMGLIAVLIDVLIRWLEYNRVPWKGKE
>AP019400.1|BBI32405.1|2130415_2131456_-|glycine/betaine-ABC-transporter-substrate-binding-protein
MPANKLRRKGLLGILAIIVVLSTILSGCNSSKSGGKDKYPKEVTIGYQVIPNAELLVKTKGLAEKKFPNVKINWKAFDSGRDVNTAIAANSIDLGLAGSVPVAIGVTNKLPYQVYFLHDIIGEAESLAVRNSSGVKSVKDLAGKKVGVPFGSTAHFSLLSALKLEGLDASKVTILDLQPQDILAAWQRKDIDGAFVWNPILSKLIADDGSILVTAQQLADKGSITADVGVVRTAFANDYPNFLKDYVSVLDEAVKLYRDKPEEVAKDLAPVLSTDEKDALAQTKQLVWLTSAEQSNAKYLGSKKSESGFADVLLQTAQFLVDQKQIPSVPKLEDFQAAIRQEALKK
>AP019400.1|BBI32404.1|2129593_2130403_-|nitrate-ABC-transporter-ATP-binding-protein
MALSIAHTQLPEASPSIDGELLIAVEDLSLSYGSGKRNKQVLGHINLEIREQEFVAVLGSSGCGKTSLLRILAGYEQLSAGRINVLGKDRVSPNADVGVVFQHANLFPWLSVQNNVQFGLKMKRLPKPQREEIASEIIAQVGLAPFAHYLPYQLSGGMKQRAAIARTLAADPRIMLMDEPFGALDAITRENLQSMLKLIWKNSRRTVFFITHDVDEALFLGTRIIVMNGSPGRIGTDIANPIFEDGGSIASLRKNKEYSFLRESLLERM
>AP019400.1|BBI32403.1|2128626_2129271_+|hypothetical-protein
MIKKLKYLSIVAIIIAVTATVATSVFASSPISIDSLFSGMKANLSKPGDLPDGNVIAKVGSKEITYKEFRENSENVKMFEKKAGASLNRSNNDILNDMIKKQLTVQYAIEKGIVVSDEEVQSYANEQREALQTVSEEAKEALKNLINISGLSENEYWKSDVLLSKYRNWIIINKLIESDNSLYTLEAFNSFQESLLKNSSQNVDIDQQNFAAIK
>AP019400.1|BBI32402.1|2127622_2128240_+|hypothetical-protein
MTKVKKIFAAAIVFTLLVGILINSSIEKANASIQNIDDSETQINYIPIEVKDYVKVPDFINKLSPKERERFLLDLELSEQISKLSKSIKDKNIDIGGIYQDNTNRKIVIQVLNDNQKQAIQDLGVSDKYLIYEYVKYSNTDLKKFEASINDAVRSKLIEGVTAYWIDVKENKLVVAVDDYSSEKTLINYVNQDALKLAKISLVTD
>AP019400.1|BBI32401.1|2126819_2127128_-|hypothetical-protein
MKQLSFILIFALLLTACTDVKVSTSEGTVTKAQFEQIKDGMSYKEVVKIIGGEGELLTESGSPGDDLHTVMYQYNGKGSTGANANFMFQANKLVTKAQSGLK
>AP019400.1|BBI32400.1|2126063_2126624_+|hypothetical-protein
MKSVLRLTVLVLLISAAVGCSGGSFKPNTFSLSDMCIVKIDNKSKVCYGDTRSQAEKVLGSGTKSVFGYDYDFGVSLGFRDDKVVLLSFDEDAKGVYRTARGAKIGILKSDVEKLYGDKYAGEDGEYLHYLYDSKGNEFISEVPPGWVETDYDVGVNTFVLQVYFDDNGYTNQIELIDYLYSMIAE
>AP019400.1|BBI32399.1|2124822_2125857_+|sporulation-integral-membrane-protein-YtvI
MPVRALLLMVGSLAFLYLLFTVGSPFLLALVVAIFLEPLTVLLMNKTRINRLAASTITSSLFTIILLGMLGLIGMKLVSELGSFFEKLPDILKNANVYIRQLIEQAQKYSNNGDAPVPDHLEQWLSNITAALSQLSAKISGILFGFASGIPDFFIFFIVFLVAVYLFTLSLPMMKTSFLSFFEEKSKRQVEEVLISLRNSVFGFLRAQLLLSVITYVLSFIGLLILGTAYPLAIALLIVVVDILPVLGVGSALIPWAIYQIIIGDTYTGVGLILLFLVITIIRRIVEPKILGDAVGIGALSALISLYVGYELVGLIGVFLGPIVVIMFMAMHKAGLFDFKIKFN
>AP019400.1|BBI32398.1|2123431_2124787_+|membrane-protein
MELQWDLIFWNVVLVLFLVLLNGFFVASEFALVKVRQTRLLQLSNEGNTRAKYALKVNKRLDAYLSATQLGITLASLGLGWVGEPAIADLIVNPILHNFGVTDERVIHTVAFTVAFCVITFLHIVLGELAPKSLAIQRSVGVSLWLSWPLLIFYRIFLPFIWFLNGTANRLLKLVGVEPASEHEAAHTEEEIRILMSQSAKSGIIDKDEMTLFDNVFEFADRVAREVMLPRTDMDCLFANLSYADNMKQVYESKHTRYPVGLEDKDQILGFVHITDLLTADPDEEHDLKDFLRPILSVPESMEVSKILKLMQRKKSQVAIVIDEYGGTAGMLTAETILEELVGELHDEFDDELPDVIVKGELTSVDGRILIEDVNVLLGLEIEDEEVDSIGGWLFNLLEGNISKGQKIIHDGYVFEITETERLRVQRVSIYKNKIVIADPPAVSSESKEKS
>AP019400.1|BBI32408.1|2133931_2134165_+|hypothetical-protein
MYDAQWRDYMPYVSQNDPCPPIRVKWFIVPPNQFINFQPMNLPQFPLEEALRRGTLWPALYSPYPSRRSAKGGKVNG
>AP019400.1|BBI32409.1|2134157_2134658_+|hypothetical-protein
MVERYNRNDDRNERNVRNDPSNYNERNDRSNFNDRNDQSNYNERNDRNDRNERNERNERNERNERNERNERNERNKKADKGLRGDENYCQELEELQKVDFALVELTLYLDTHPTDMQSVQQFNQLAQRRQQIANEFEMKHGPLLQYGHSYSRFPWQWVDSPWPWQV
>AP019400.1|BBI32410.1|2134673_2135243_+|protein-CotJC
MWIYEKKLQYPVRVSKCDPRMARYLVEQYGGADGELSAALRYLNQRYTIPDKVIGLLTDIGTEEFAHLEMIATMIYKLTKDATPEQLEVAGLGANFVNHDGAMFYNNASGVPWTAAYIGTKGDPIADLYEDIAAEEKARATYQWLIDYTDDVDLQDSLRFLREREIIHSLRFKEAVEILKTDRDQKKVY
>AP019400.1|BBI32411.1|2135361_2135568_-|hypothetical-protein
MNGEFSIDSFLRAGGGVSERWVLYCYFLLVGGGVSERGVLYWFFLLAGAGVSERGVLYWFFFIGGRQG
>AP019400.1|BBI32412.1|2136158_2138426_+|glycosyl-hydrolase
MKEIRDIKALIAQMTLEEKVSLCSGLDTWHTRGIERLGIPSVMVTDGPHGLRKQRASSDHLGLFDSVPSTCFPSAAGVASSWNRQLIQRMGEALGRECQAENVAVLLGPGANIKRSPLCGRNFEYFSEDPFLSSEMAANHIIGVQSQGVGTSLKHFAANNQEHRRMTSDSIVDERTLREIYLASFEGAVKQAQPWTVMCAYNKVNGEFASENETLLTDILKNEWGHEGFVVSDWGAVNDRAKGLAAGLELEMPASYGEGDKQIIEAVRSGQLAEKKIDEAVERLLSVVFKSVDSRRPDIVFDIEEHHQLAREVARESMVLLKNQDNILPLAKGGKIAVIGAMAKEPRYQGSGSSQIKPTRLEDISEELAKSAGEGAELLYAKGYNLDAEELDADLTAEAVRVASTANVVVVFAGLPKRYESEGFDRQHLRIPANQVALIEAVAAAQPNVVVVLSNGAPVEMPWLSSIKGVLEAYLGGQALGGAIADLLFGDANPSGRLAETFPVKLSDNPSYLSFPGEGNKVEYGEGIFVGYRYYEKKGLAPLFPFGHGLSYTTFSYADLTIDKKTLKDTESLKVSVRVTNTGLRAGLEVVQLYVRDVESSVIRPNKELKGFDKVELEPGESKTVTFKLDKRSFAYYDVEVSEWTVETGNFELMLGRSSQDIILSETVTVQSTAVRKTVFHRNSTLSEVGKTPLGKVLVQQILANLPFAAAIGSEHEAMVKAFMEHMPLRGLLSFSGGKFTEISLAAMLKKLNDE
>AP019400.1|BBI32413.1|2138718_2139219_+|hypothetical-protein
METVLIVLFGIGVGYAIISAVVGDLFGLEMHTGDLPFLSPTIIATFLTVFGGVGYMLLHNTSWSALSVAGLSMVVALGVSSLVLFLVVIPLHAAQKGTALSAKAMIGLEAKVVTSIEALRLGEIVYEQGGTRHSAPAKAIEDAVIPQGTQVRILDEMAGTFVVEKV
>AP019400.1|BBI32414.1|2139247_2140720_+|membrane-protein
MNLDSTIYIPVGIVIVVILLVIVFASRYRTVKADEAMIVTGALTKDGMKIVKAGGTFVWPVVQNASFLSLQVQTVDVHTPEVYTVHGVPVMVDGVAQIKIKGDQESMATAAEQFLGKPDVELKSIATQTMEGHLRAILGTMTVEDVYKNREEFARNVQEVAASDLNKMGLQIVSFTIRDVRDKNGYLDALGQPQIASVKRDAEIAKANAYRDEQVAKSKALEDGKKAEFTAETNIAEAHKTMEVKKAVFKQEQDMKKAEADQAYKLQEARSMQSVKGEEMQIQVIEREKQIELESKEIERRELELVATVKKQAEAERFAQEQRAEGDRYQIEAKAKAEAESVRLAGNANADKERAEGTAEADVIRLKGLAEAEAKDKIADALKKYGEAAIIELIVGKFPEIARAIAEPLSKTEKIVIVDGGGSGPNGGAGKVTGYVTDLLAKMPETVGALTGVDVNQWLRKLAQGDNAVKKDITGESTSSTPSNPSNPQS
>AP019400.1|BBI32415.1|2140828_2142268_-|hypothetical-protein
MKNKRIATLVYAALTFIVVLCLFPKFSYNDPDTFWHIELGKYMLQNGTVLHHAINTFYNDQLPYVPHEFGFQIIIALLYKAFGWPGTYILTALCLLLLTLGLYRLTRVSRKEMGLEQHHSVMYLFVLAVTCCIYFYYFTARPQMISAFLIVWFFVYLREFRMQQSSKYAILMALISMGVANIHAGVWPVIAVFTAMAIIEAWAEKRLGKRNIIAFAFVYIAGLINVGGLKSIFYILTVTKNNFNMRIDEWQPINFGEWINLPRTVLLLLFMCIIPFVLHKKLFRFMFMLGIVYLGIASYKQNLFMWLFIPYFAATVVDLVPYTNKIRIQLSTKSIAIFLAAALSVNLIFVSVYPVQTNKHDYPVEEMTYILKQKPDGVRPKVLAPYGSSGYVNFRGGDILCDGRQDPFVTDESKGVFGWTAFERSMNGFSDYLTDIVAYDKPEYVITSNKFYGRPFNKMIEKYGQPVFKGTYGNVFLIK
>AP019400.1|BBI32416.1|2142460_2143126_+|phosphatase-PAP2-family-protein
MEISIKNIFARSYIISIICALGFAAIATLIGVHKIAWFDDRIITVVQGQESAGLTAFMKFFTFIGEGIPVAIITVVAMVILYFGLKFRSELIFFVGVVVGSALLNTGLKLIFQRARPTLHRIVEANGFSFPSGHSMAAFSLYGVLCFLLWKHMRSAFARVVLIIAGCLITVTIGISRIYVGVHYPSDVIGGFLASAAWLVASIAYYQYWIERRNRKQSDAQ
>AP019400.1|BBI32417.1|2143216_2143960_+|hypothetical-protein
MPQYVGSKWRKTAALLHSTQFNKIIPKTVRFNRLQLKSMLQKFSMVYVKPDMGSHGKGVMKVEHSNGQYRFQLGEHPRTFRTYEALYDAIRKETKGRSYLVQRGVHLLTHKGRRFDLRVMVQWSPRRVWETTGIIGRVSAPRKIITNYHGGGKLTPVRKLLGGYLAKQAVEKKIASLERMGVRAGQAMRRKFPRVCEIGVDVGMDRTMTPWVLEVNTAPDPYIFRKLSDPSIFKKIRRYAKAYGRLK

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Crispr_ID: AP019400_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_10

2316753-2317461

Orphan

Consensus_repeat	Method
TGAGATAGANTANAGCGGNNNNACCGACTAATT	CRT

13 spacers

DEDDh

The CRISPR arrays of AP019400_10

>merge|AP019400|10|2316753-2317461|CRT
CGGGATAGAGAAGAGCGGCGATACCGACTAATTCGGGTCAGCAAGGCAAGTTTGAGATAGAGTAAAGCGGAGGGACCGACTAATTGGTGCTACAGTGGCACGTGTGAGATAGAATAGAGCGGCATCACCGACTAATTCGGGATACTGAGGCGCGTATGAGATGGAGAAAAGCGGGGATACCGACTAATTGGCGAGACAGTGGCACGTGTGAGATAGAATAGAGCGGCATCACCGACTAATTCGGGTCAGCAAGGCAAGTTTGAGATAGAGAAAAGCGGCGATACCGACTAATTGGCGCTACAGTGGCACGTGTGAGATAGAATAGAGCGGCATCACCGACTAATTCGGGTTACCAAGGCAAGTTTGAGTTAGAGTAAAGCGGAGGGACTGACTAATTGGCGCGACAGTGGCACGTGTGAGATAGAATAGAGCGGCATCACCGACTAATTCGGGAACCTGAGGCGCGTATGAGTTAGAGAAAAGCGGTGAAACCGACTAATTGGTGCGATAGTGGCACGTGTGAGATAGAATAGAGCGGCATCACCGACTAATTGGCGAGACAGTGGCACGTGTGAGATAGAATAGAGCGGCATCACCGACTAATTCGGGTTACCAAGGCAAGTTTGAGTTGGAGTAAAGCGGAGGGACCGACTAATTGGCGCGACAGTGGCACGTGTGAGATAGAATAGAGCGGCATCACCGACTAATT

>AP019400|10|3|2316753-2317461|CRT
CGGGATAGAGAAGAGCGGCGATACCGACTAATT	CGGGTCAGCAAGGCAAGTT
TGAGATAGAGTAAAGCGGAGGGACCGACTAATT	GGTGCTACAGTGGCACGTG
TGAGATAGAATAGAGCGGCATCACCGACTAATT	CGGGATACTGAGGCGCGTA
TGAGATGGAGAAAAGCGGGGATACCGACTAATT	GGCGAGACAGTGGCACGTG
TGAGATAGAATAGAGCGGCATCACCGACTAATT	CGGGTCAGCAAGGCAAGTT
TGAGATAGAGAAAAGCGGCGATACCGACTAATT	GGCGCTACAGTGGCACGTG
TGAGATAGAATAGAGCGGCATCACCGACTAATT	CGGGTTACCAAGGCAAGTT
TGAGTTAGAGTAAAGCGGAGGGACTGACTAATT	GGCGCGACAGTGGCACGTG
TGAGATAGAATAGAGCGGCATCACCGACTAATT	CGGGAACCTGAGGCGCGTA
TGAGTTAGAGAAAAGCGGTGAAACCGACTAATT	GGTGCGATAGTGGCACGTG
TGAGATAGAATAGAGCGGCATCACCGACTAATT	GGCGAGACAGTGGCACGTG
TGAGATAGAATAGAGCGGCATCACCGACTAATT	CGGGTTACCAAGGCAAGTT
TGAGTTGGAGTAAAGCGGAGGGACCGACTAATT	GGCGCGACAGTGGCACGTG
TGAGATAGAATAGAGCGGCATCACCGACTAATT

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI32596.1\|2309012_2309393_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377828
AP019400.1\|BBI32609.1\|2322971_2323208_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224064
AP019400.1\|BBI32597.1\|2309468_2309981_-\|putative-thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
AP019400.1\|BBI32595.1\|2307959_2308706_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227865
AP019400.1\|BBI32602.1\|2314075_2315164_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225457
AP019400.1\|BBI32605.1\|2317569_2318871_-\|putative-MFS-type-transporter-YitG	unknown	unknown	gnl\|CDD\|341027
AP019400.1\|BBI32606.1\|2319069_2319651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239264
AP019400.1\|BBI32610.1\|2323238_2323475_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32604.1\|2316332_2316476_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32613.1\|2328001_2329573_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271323
AP019400.1\|BBI32600.1\|2311813_2312212_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133406
AP019400.1\|BBI32612.1\|2325307_2327962_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380173
AP019400.1\|BBI32608.1\|2321562_2322852_+\|DNA-polymerase-IV-1	unknown	unknown	gnl\|CDD\|179337
AP019400.1\|BBI32601.1\|2312653_2314018_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
AP019400.1\|BBI32614.1\|2329589_2331050_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341130
AP019400.1\|BBI32599.1\|2311070_2311754_-\|putative-membrane-protease-YugP	unknown	unknown	gnl\|CDD\|225348
AP019400.1\|BBI32607.1\|2319800_2321414_-\|citramalate-synthase	unknown	unknown	gnl\|CDD\|237068
AP019400.1\|BBI32598.1\|2310091_2310994_+\|HTH-type-transcriptional-regulator-GltC	unknown	unknown	gnl\|CDD\|176125
AP019400.1\|BBI32603.1\|2315160_2315904_+\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236085
AP019400.1\|BBI32611.1\|2323407_2325237_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI32596.1\|2309012_2309393_+\|hypothetical-protein	gnl\|CDD\|377828	pfam07386, DUF1499, Protein of unknown function (DUF1499). This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.	2.39463e-06
AP019400.1\|BBI32609.1\|2322971_2323208_+\|ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	6.18194e-23
AP019400.1\|BBI32597.1\|2309468_2309981_-\|putative-thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	1.36698e-86
AP019400.1\|BBI32595.1\|2307959_2308706_+\|hypothetical-protein	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	4.72307e-31
AP019400.1\|BBI32602.1\|2314075_2315164_+\|hypothetical-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	6.2674e-70
AP019400.1\|BBI32605.1\|2317569_2318871_-\|putative-MFS-type-transporter-YitG	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.35059e-95
AP019400.1\|BBI32598.1\|2310091_2310994_+\|HTH-type-transcriptional-regulator-GltC	gnl\|CDD\|176125	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.10714e-82
AP019400.1\|BBI32613.1\|2328001_2329573_+\|hypothetical-protein	gnl\|CDD\|271323	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins. This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	4.58072e-101
AP019400.1\|BBI32600.1\|2311813_2312212_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133406	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.44172e-26
AP019400.1\|BBI32612.1\|2325307_2327962_+\|hypothetical-protein	gnl\|CDD\|380173	NF033165, lipo_LipL45, lipoprotein LipL45. Members of this family are lipoprotein LipL45, as described in Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.	5.82429e-14
AP019400.1\|BBI32608.1\|2321562_2322852_+\|DNA-polymerase-IV-1	gnl\|CDD\|179337	PRK01810, PRK01810, DNA polymerase IV; Validated.	3.53927e-166
AP019400.1\|BBI32601.1\|2312653_2314018_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.81479e-132
AP019400.1\|BBI32614.1\|2329589_2331050_+\|hypothetical-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.78794e-30
AP019400.1\|BBI32599.1\|2311070_2311754_-\|putative-membrane-protease-YugP	gnl\|CDD\|225348	COG2738, COG2738, Predicted Zn-dependent protease [General function prediction only].	1.73282e-118
AP019400.1\|BBI32607.1\|2319800_2321414_-\|citramalate-synthase	gnl\|CDD\|237068	PRK12344, PRK12344, putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional.	0
AP019400.1\|BBI32606.1\|2319069_2319651_+\|hypothetical-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.97051e-35
AP019400.1\|BBI32603.1\|2315160_2315904_+\|hypothetical-protein	gnl\|CDD\|236085	PRK07740, PRK07740, hypothetical protein; Provisional.	6.11944e-107
AP019400.1\|BBI32611.1\|2323407_2325237_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	9.05032e-62

>AP019400.1|BBI32604.1|2316332_2316476_-|hypothetical-protein
MIDLVSDNNASHQPATFKIGVEVGSDKKDGIKVMGTHSIEIPILLTN
>AP019400.1|BBI32603.1|2315160_2315904_+|hypothetical-protein
MKEPKDTNSMGRMWNLYKMGGLTPAIASMLGSSNAQQMAFIRSMSRDQRKESSLEMQLSDMEAVVFDLETTGFYPYNGDEILSIGGVIIRGDNFEEAAPFYQLVNPKRKVPRHITELTGITNEMAENAPDLMQVLHDFMNFAGKRVLIAHGSGHDKQFLNSALWRTSKINLTHRILDTMMIAKWLEPKAIHYGLDEVLERYGVEVTERHHALHDSVMTAKLYFRFLKLIADRQVTTLGELYAYLSRH
>AP019400.1|BBI32602.1|2314075_2315164_+|hypothetical-protein
MHNPQREKRLLDIASAEELGQLRFIRETEQDQLATELSTSPIDEVVERLNALHDSLITQALKLAEADMARLGHGAPPVPYTYMLYGSGGRFEQTMCSDQDSGLVYANASDEQEDERCRSFFPKFTETVVQYLIKLGYPPCEGKVIASNPEWCLSLKGWEGKINSWFTEPSWENVRYLLIAADGRPIAGSLELAGRLQEYFFNDLIENPVIAQRMIENTIRYKVLVGVFGQLLTEQYGENAGSLDIKYGAYIPMVNAFRLLAVQAGIRETSTLKRIEALHSASLLTREEADEASEAFIFFLKMRMLTIVTDDKGQWVGTGKISREQLTKEIRLPLKKALKAGRKIQLRVQRELQHRFGGRWRQ
>AP019400.1|BBI32601.1|2312653_2314018_+|ammonium-transporter
MIKKSLISLGALLLLFPTMAFAEDPSASQLNMGLNALWVMLAAILVLLMQGGFILLEAGSTRMKNAGHVAGKTIFTLGLASIVYWAVGYGITFGGDASESLNKFIGIGDFFFNPSFAALAGDDYPSSVFFVFQLAFAAVSLSIAWGGFAERAKLSAYLIFTLFFVSVIYPVVAHWIWGGGWLAEDGAQDFAGSTVVHLTGAMAAFAATILLKPRIGKFNKDGSANEILGHNQVFTALAVLILWVGWFGFNAGSTAAIGDGFFGFVAFNTQLGAAAGAVSALLISWLVNGKADITAMLNGALAGLVAITASCAFVDPWAAVVIGLVAGVLVFFSAKFFEKMKVDDPIFALSVHGAAGVWGTLANGLFATEELSAKVGVGKAGLFEGGGWGQLWVQFESVVVCGAFAFLASYIVLWVVKQVIGLRVTEEQEIIGLDLSEHGNYGYPEQLKKENASV
>AP019400.1|BBI32600.1|2311813_2312212_-|MerR-family-transcriptional-regulator
MAGISPRTIDYYTGLGLLAPAKRSTGNYRLYDDETLTRIRRIEQLKAQKYSLEEIRDQFTSINHVVTNEAVSRKLSDLQVHLAMLEREVKELEPVLEQLKPQQAKRLFRAITPQTAACVEALLLLLGKGNFM
>AP019400.1|BBI32599.1|2311070_2311754_-|putative-membrane-protease-YugP
MLFFHPMDFLIIIAFVLSLWAQYRVKTTFNHWSEVKSATGLTGYEAARRMLDRNGLHDVPIEPVPGRLTDHYDPINRVVRLSEPVYYENSISAISVACHEVGHAIQHQSSYPMLVMRHRMFPVVRFASGFAPLLLIGGFLLQSLNLIGVGIIFFSAAVAFQLVTLPVEFNASSRARDIMISEGFITQDEERGVAKVLNAAALTYVAAALIALLELVKYIMIFTSNRD
>AP019400.1|BBI32598.1|2310091_2310994_+|HTH-type-transcriptional-regulator-GltC
MELRQLEYFVQVARLQHVTKAAEELHVAQSAVSRQIHRLEEELGIRLFMQRGRNVQLTPVGQLFLKRAEAILGDLDRAVMEIHEFLDPEVGEIRLGFPHSLGINLVPQVVAAFRKLHPNVKFKFRQGMYPSLIRDVVDAEVDIAFISPFPDKNDQVIGEVVLTEELFAILPENHRLAHEESIKLGDLKDETFVLFSSGYSLRPIVWDACREAGFTPKIGFESEEAGTIRGLVAAGMGVSLLPEMAMYETSSMMPAVVKVSEPRINRTIGLIRRSGEKLPQVVHMFHTFLLDFFQNEYKPR
>AP019400.1|BBI32597.1|2309468_2309981_-|putative-thiol-peroxidase
MSQERSVTLKGNPITLVGPVLKAGDAAPDFTLNKNLLETSSLKDFAGKVKLISVVPSIDTGVCDAQTRRFNEEASGLGDNVVIITVSADLPFAQARWCGAAGVDRVVLLSDYKENSFGKSYGVLIKELHLDMRAIFVVDGNDQITYVEVLNEMADHPDYEAAVAAVKSLI
>AP019400.1|BBI32596.1|2309012_2309393_+|hypothetical-protein
MKRLLLGLIRSHENTSDKAKDPKLKSHYYRLSKDRAWDEVTSILKKMKGYKVLHEVQTVGEIVMEKKSMSGRTMDITIQVVGTSPGNTAVDIYSASRGSLGDLGANYRIIQEIYSVLDRKLSSYKA
>AP019400.1|BBI32595.1|2307959_2308706_+|hypothetical-protein
MEMRGMMGGFYRLSEWIMRLSVTNVLWLITSFPFWLMVIIFLGAKDTEQLKAVIIPLAIVAPFTLFPATSAMFSVARKWVLGDTDVPLFKTFFRSYKQNYLQAMIGGIIYALLFAILIIDFQVYLKQISGFQIIAYLFVALLLLLLISLLHFFSLLSHFHMKTIQLLKNALILTIGRPIRSLIMAIGAAAVIFMSTRFTFLIPFFFGSMIAVYTFYNFNLVIQKMMLLKDAAEAETSETEEDEEEKKA
>AP019400.1|BBI32605.1|2317569_2318871_-|putative-MFS-type-transporter-YitG
MSTTTESKRKLSVTFTSDMTSQTETKQKASPSSTGGRKSKIWEYIALSTVPLVLVLGNSMLVPILPTLSKELGISKFQSSLVISLFSFSAAIIIPIAGYLSDRFSRKAVMIPALIVYGGAGILAGLGAVWDSYGILIGARAVQGIGAAGTAPIAMALVGDLFKDGEESQALGLIEASNGAGKVVSPILGALLAIIVWYAAFFAFPVFCLLSLLAVIFLLKEPKREEQPKPLKQYLKSIRSIFAKQGRWLISSFFGGSLALFILFGVLFFLSNILEEPPYSIIGVRKGLILAIPLLGMVLTAYLTGTIIKKNGVLIRWLMNIGLAMMVVSLALAIWFNSNLYVFIGLLTVSSIGTGLLLPCLNTMITGAVEKAERGMITSLYSSLRFFGVALGPPLFGWLMGMSHQLVFITVSSLSFIALGLVFFMVKPGKQVQ
>AP019400.1|BBI32606.1|2319069_2319651_+|hypothetical-protein
MKRNVLILGLVVIAIVAVWIWDSPSGKEGNQATVGAPAGKVDDRNIPSKPSPKVNHYAPSFSLPSLDGTSTFEVGGKRDKVLIVNFWAAWCGPCELEAPDLKDIYEKHQDKLDLYAVNATNFDKLREAKDFVKEQELVFPILTDAKGVAGDLYKVYSYPISFIIDRDGVIRHRIEGVIERKQWEIYLQEVINS
>AP019400.1|BBI32607.1|2319800_2321414_-|citramalate-synthase
MSTPLCIFDTTLRDGTQGEGISLTADDKVKIALKLDALGVHYIEGGNPGSNSKDIEFFRRVRELQLQAKLTAFGSTRRKNSTCEQDINLKHLTESGAQAATLVGKSWDFHVHTALQTTLEENLAMIYESLAFVKQSGMEALFDAEHFFDGYKANPEYALAALAKAKDAGANWIVLCDTNGGTLPGEISEIVSRVVSTIDAPIGIHTHNDAELAVANTLAAITAGARQIQGTINGYGERCGNANLSSILPTLQLKMGYSCVSDEQLKTLTSVSRYVSEIANVHMPVNQPYVGNAAFAHKGGIHVSAIMKDSKTYEHISPDLVGNKQRVLVSELAGQSNILSKAQELGLEVNSESMKSREVIDRIKELEHQGYQFEGADASLELLLRDAYGSSVEVFTVDSFKIMVEKTAAEMTTEAIVKISVAGEQVYTVAGGNGPVNALDNALRKALVQFYPGIRDIHLTDYKVRVLDEKDTTAAKVRVLIESTDFKDRWSTVGVSSNVIEASWEALVDSIRYALLDMVKDETIHELVRESHGLVNH
>AP019400.1|BBI32608.1|2321562_2322852_+|DNA-polymerase-IV-1
MSESAGKLRIILHIDMNAFYCSVHAAEEPDIYKGKPTAVAGSVELRKGIVVTSSYEARARGVRTGVTVRQALTVCPELIIISPDFDLYRKYSRGFMRIAGNYTPLIEAVSIDECFLDITGSSQFGTPIEIAETIARRVKEELSLPCSIGIAPNKLLAKMASDMRKPDAITILRRREVPKLLWSKPCQTLYGIGARTADKLLRLNIRTIGELAAANEKVLVERFGVYGAWMKQAANGIDDSPVEPLQEGPKSIGHTTTLPADLTGREQFRRVLLNLADQTTRRLRHQRMVSSTIQITIRDPDMRTITRSSTLAIPTDTVEDVYRVACRLMEAHWKEGSPVRLLGITLQTLASKEETPLQLDLFSYEESPKKDRLITAMDSLRDKYGEDAVLTAGMLGDDPSTLIRNKKLRGTSLQKDFLREKSPDIENDY
>AP019400.1|BBI32609.1|2322971_2323208_+|ferredoxin
MSKYTYVDKDTCIACGACGATAPDIYDYDDEGLAETIYGSDGNHGNTEIPEDLYDDLQDAADGCPTDSIKVADSKFNM
>AP019400.1|BBI32610.1|2323238_2323475_-|hypothetical-protein
MKYTATIKRTFKTMVILLIRSFKKNLPPYVNDSNYKINYNLSYGFYVVFYLNDDLCEKSYEKSCHLRTNKNPFLGLCT
>AP019400.1|BBI32611.1|2323407_2325237_+|adenylate/guanylate-cyclase-domain-containing-protein
MKERIRRMTIVLNVLLIVAVYFIYSSHSMQKIDNLLFDYDMKQVRDGIADSRIVVVAIDDESLSQLGRFPWDRAVYAQLLANMNEEGNIPTSIAFDIVFSEESGNPDSDMAFAEALAEYPNVILPVVGITENNINNRTVVKRDQLLKAVSVSEPYQLFADVTKKAHINRVISPDGVIRQTWLKIQSPTGEVIPSLAYLSAQMAGVDLSKYDAITDPSKTAEQIAKNTITIDYQLKTENFTTVSFVQVLNGEVPPDLFKDSVVFIGFTAVGLSNEGGQDTGVTPIEKDIKMVYAHANITNQLLKGTSISFTSNWSELVLIFVLFVLFGILPWRLKNIYSILIFLAVFSCVLYGQFALYQQSAIHINIIYALLAMMLAYLANVSLKSYMDSVQKSFVTRQFGRYISPDLVKQIVAQDIEIKLGGDLKTISILFLDIRGFTPLSEKLTPSELVDTLNTMFNMITETTLRNQGTIDKFIGDAAMILFNAPLEVVDHERMAVKTAYEIQQGMKKIKDEIMEKYQCEVNVGIGIHAGPVVVGNIGSYLRVDYTAIGDNVNIAARIESQTKKGQVHVSEQVYEKTKQYYRFDEGEDRMFKGKSHPIRVYEVLGIVE
>AP019400.1|BBI32612.1|2325307_2327962_+|hypothetical-protein
MKKFSLHFIVALLVLMPLLGALANESSAAASRVSVIKELKGSVKVKKSGGSKEFTAFVKMSLNEGDILKVGAEGSAVLQFGNGSSEDDLMTVSSNTTLTFSKLSDNKGTTTKISMLKGSVWSSVKSIKNKDDKFTLETPTAIMGVRGTNLLVSVDPFTGDSKFVILSGVGSIEPQKNNPTLVTLFPNQQVTIDDRNETEQFPDEVIILDLENFTKMMGASANQIIKAIIVAKAEIDKENDEFIKKKQQELQNNNKDDLDRILQNLNNLIANIIKSSFNDKKIDKDSILKIVDEVNKTLTQPKKIDLDNTVPLQLTEQEKKKQEELRKLEQAKLEKLQKSKEQEELLRQKDELAKKLADLKKKTDDANKKAEDDAKEKAKLDYEKQLSELEKKKFEEESKKREQELKNQTASPTPTPSPSSNTGTGPTPTPTPTPTPTPMPTSPFILFFNNPGAYTWAEKDFSYESSVQEYSFDLIFNTQLALIKRNQIPGEYVVSVEYSNQETGNNYVQVPLHEIENGYIIPLTVRENKIKVHTESGESSELIEKSYTLTVNRSSAPEGLAAWNASAIDRNEGVYSFEWQGTGVDKYAYDLRTSSEVSRIFDTVKLSLEFQPGITNAELHYKDANTEDRTIRWSDSGLKSIENLPQGYIFMQLKLFTGNQVSHTMGLWLINGNADLNRDKPLVITDNLNAPLEYKFEYEFEGYDNYIIFVPEEATSISLANNESSNMLIQSVYYGDEKYTTGNNGSIMLPLSEGESFFTANFGDISGLEYETMYYEFQVVRVPTGIANWSIQNSYSDFYDYWDKEDNSGEYSTTTPDNELFLNISTKENVSLKIFKGSEQIAPPNPRYRLEGLEVGENKFTMSITSNSTTKNYTLVVYRLPPPA
>AP019400.1|BBI32613.1|2328001_2329573_+|hypothetical-protein
MKIEFKKIVAAALTFTVLTLPTAALAASSTEWTKSAKLYEVHTWTGNSEIGHRNGSVSEATFFQPKSVVVTADGNLLVTDSSNHFIRKISVDKVDDYTGYKLGVDENKLPIGGYNDDILKDAAFNKPSGLAIDAQGNVFVADTDNNAIRKISKDGKVTTLAGNGLLGLADGVGEKAKFYSPSDVAVDSQGNVYVADTLNNVIRKITADGTVKTLTAPSTRVVEYFPGVAEAVGDFLDGPIPSAKFNEPSGLVIDNKGNLYVSDRGNQRIRYIDFANGKVSTVAGGGELAKQAPYVEGDYVDGPAAQSRLNAPEGLTVTADGSLIVADSLNHVIRIIKDGTVSTLAGVPTEFGKANGIASSAQFNHPTDVVVLPDGRLVIVDESGNKIRVLQKYAKPAALPASVISVLYDGKLVPSDVPAQNKSNAVLLPVRSVGETLGYKVEFDNKTGNAILTKGDAVYTVSKNANTVKKTVNGKSEALTLNSETAFVNNRFLIPVRFFAIESDLDIQWDSEFQIVVIRNKTF
>AP019400.1|BBI32614.1|2329589_2331050_+|hypothetical-protein
MSKESRIDEQIQHFYDNVPNVGDALPLKDYLLKHEDSRMAWYLLGKEYEGQKDTAKATYCFAQAGEIYEAFESKPAPMLPVSKSKNKSRSRLKWIIGILAPFLLVGLAVGAIKAFAPDKSEPLSNVPVAEGTLTPVSPSVPTRGTQASLPPNVVPPDQIAGASSSDKDGGQVLGALLTNNPSRQPRLLIKTPALGKWSDWVKSGKLIASVTSDKESGTAAINWYDSKWCNCKPDDATSTQKLVKGWMPLQEEKIVLRSAIIRYKASTGKWPATPETLAADYPNNTMAGWTEGMTPWFDELKGNLENKKDGKIPQAPAWPDNTGPDMGHGTPSGQLSAMAEQPLAIMIDTENHRLAVVSGNVLLRNYEVGLGGSKTPERSFVISEKVKNPNGRSDGAFGSRGMTLSDTRYGIHGTDEPKSIGKDESHGCVRMKKEDVEELFDLVPLGTPVTIAKGGLPNELRAPPERFRLTSTQDETNPHKVYDWLN

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Crispr_ID: AP019400_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_13

2783427-2783520

Orphan

Consensus_repeat	Method
TGAACTACACATATGGGTTGGCAGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_13

>merge|AP019400|13|2783427-2783520|CRISPRCasFinder
TGAACTACACATATGGGTTGGCAGACAGAATCGATTAACGAGATCCTCCAAATTAAACTTCCTGAATGAACTACACATATGGGTTGGCAGACAG

>AP019400|13|8|2783427-2783520|CRISPRCasFinder
TGAACTACACATATGGGTTGGCAGACAG	AATCGATTAACGAGATCCTCCAAATTAAACTTCCTGAA
TGAACTACACATATGGGTTGGCAGACAG

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI32972.1\|2787050_2788493_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
AP019400.1\|BBI32975.1\|2790153_2790393_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223461
AP019400.1\|BBI32965.1\|2779286_2780813_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223744
AP019400.1\|BBI32970.1\|2785009_2786284_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
AP019400.1\|BBI32973.1\|2788574_2789417_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273257
AP019400.1\|BBI32976.1\|2790368_2790842_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129739
AP019400.1\|BBI32977.1\|2791029_2792196_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340883
AP019400.1\|BBI32967.1\|2782030_2783269_+\|deferrochelatase	unknown	unknown	gnl\|CDD\|273606
AP019400.1\|BBI32966.1\|2780831_2782007_+\|Efem/EfeO-family-lipoprotein	unknown	unknown	gnl\|CDD\|225378
AP019400.1\|BBI32964.1\|2778519_2779047_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32960.1\|2773375_2774431_+\|ferrichrome-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
AP019400.1\|BBI32971.1\|2786461_2787001_+\|isochorismatase	unknown	unknown	gnl\|CDD\|238245
AP019400.1\|BBI32974.1\|2789517_2790033_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227027
AP019400.1\|BBI32959.1\|2772035_2773052_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238558
AP019400.1\|BBI32958.1\|2770252_2771914_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238558
AP019400.1\|BBI32961.1\|2774433_2775468_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
AP019400.1\|BBI32962.1\|2775508_2777224_+\|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
AP019400.1\|BBI32963.1\|2777258_2778311_+\|ferredoxin--NADP-reductase-1	unknown	unknown	gnl\|CDD\|223566
AP019400.1\|BBI32968.1\|2783563_2783713_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI32969.1\|2784014_2784866_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI32972.1\|2787050_2788493_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
AP019400.1\|BBI32975.1\|2790153_2790393_+\|hypothetical-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	4.92925e-34
AP019400.1\|BBI32967.1\|2782030_2783269_+\|deferrochelatase	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	3.78744e-158
AP019400.1\|BBI32970.1\|2785009_2786284_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.26667e-45
AP019400.1\|BBI32973.1\|2788574_2789417_+\|hypothetical-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.77963e-121
AP019400.1\|BBI32976.1\|2790368_2790842_+\|hypothetical-protein	gnl\|CDD\|129739	TIGR00654, Uncharacterized_isomerase_YddE, phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear. [Cellular processes, Toxin production and resistance].	1.54803e-34
AP019400.1\|BBI32977.1\|2791029_2792196_+\|hypothetical-protein	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27188e-05
AP019400.1\|BBI32965.1\|2779286_2780813_+\|hypothetical-protein	gnl\|CDD\|223744	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism].	1.97219e-49
AP019400.1\|BBI32966.1\|2780831_2782007_+\|Efem/EfeO-family-lipoprotein	gnl\|CDD\|225378	COG2822, COG2822, Predicted periplasmic lipoprotein involved in iron transport [Inorganic ion transport and metabolism].	3.02071e-110
AP019400.1\|BBI32960.1\|2773375_2774431_+\|ferrichrome-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.75622e-82
AP019400.1\|BBI32971.1\|2786461_2787001_+\|isochorismatase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	5.0807e-41
AP019400.1\|BBI32974.1\|2789517_2790033_+\|hypothetical-protein	gnl\|CDD\|227027	COG4682, COG4682, Predicted membrane protein [Function unknown].	9.21401e-14
AP019400.1\|BBI32958.1\|2770252_2771914_-\|hypothetical-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.65655e-42
AP019400.1\|BBI32959.1\|2772035_2773052_-\|hypothetical-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	7.65427e-51
AP019400.1\|BBI32961.1\|2774433_2775468_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.24485e-89
AP019400.1\|BBI32962.1\|2775508_2777224_+\|multidrug-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
AP019400.1\|BBI32963.1\|2777258_2778311_+\|ferredoxin--NADP-reductase-1	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	1.6656e-59
AP019400.1\|BBI32969.1\|2784014_2784866_-\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.1551e-62

>AP019400.1|BBI32967.1|2782030_2783269_+|deferrochelatase
MDSKKQREGMTRRDFLKMTAVAGVGLAIGGAGVSAIERAVRPASTSAAESNPSEDTIPMYGEHQAGIITPQQTYMYLASFRITTEDKAAVIRLFRDWTRFSDLSTSGGTMKTGDNPLLPPSDTGETLDLPASKLTVTFGFGPTFFSVEGKNRFGISAKSPRYLKDIPRMPKDNLDHLQSGGDVIVQVCAEDQQVAFHAVRNFIRLSTGYATLKWIQEGFISGSGGKTPRNLFGFKDGTANNLHQTPAGYNDVVWAGEDEPAWMKGGTYLAYRKVRMLLEVWDRSSLTDQEDTFGRHKESGAAYGTKDEFDTVDPAQMPVSAHVRLAKQSKQLIHRRGYSYTDGVDLRTGNVNAGLLFISYQKNPDEQLIPMLKLMQSQDKLNEYTSHVASALFACPGGLREGQYIGQSILES
>AP019400.1|BBI32966.1|2780831_2782007_+|Efem/EfeO-family-lipoprotein
MNKFNKLACLLLAATLVLSACGKNNNSAPAATETSAQQSGEAPSTEKSAIQQGTIKLQEETTKLQAAIDKKDTDEVKRLGKSINEAWISFESSVRQIFPLEYTEVEKYELPIYSASAYDKIDFDALKITAGKLQEALTTLLNAKETTGSTSELLTKAVANYKVFVQEQADNLVSQTKVFAEAVKAGNAEQAKLEYPKARVFFERIEPIAESFGDLDPRIDARLADAEDEAAWGGFHRIEKALWLDNSLEGMDKYADQLVKDTEELAEKIKTLELEPKAMVAGAMELLNEAAISKITGEEEIYSHTDLVDFDANVYGSKTVYLAIIPALNEKNPDLANQLDKQFLLLEQTLLGHQTNGIYVTYDKLTTEQIRLISDQISQLSNLMSQTASIL
>AP019400.1|BBI32965.1|2779286_2780813_+|hypothetical-protein
MRSTSPWNANSLFTAVCAFALSLALFFSTYSTVLAADGLTAEQSTNEISIAIKQADEMGAYIESGNLEQGSEVFALIKKWWTVNKKTVKQNSLDMALEIDRQVASISLAFLNKDAQKALEETGALKFSLRNYSDGAYLDNDGKQQMTLSAYVMKLRQAGDLMKRQEWSEALSEVKLLQRQWLSVEGDIVSQSQTVYNNTERDLVLLDAYLSNSGKQTQAESIVDRMVVSLTPLIDAQYSWWDAALIPLREGLEALLVVGTLLMYTKKSNSKPARRWVIGGSVAGGLICIGVGFVVAFVLSSGAFGRNNSLINGWTGVLASILLLYVSYWLHRNSDVKRWNHFLESKSTKALTSGRMISLGLLAFFAIVREGLETVIFLVGMVGKMSGAELAGGIAAGFGILALCAVVMIKAGTKLPVRPVFLVSSIIVFYLCFKFMGSGIHGLQMAGALPSTVHDYLPESLSISLYPSWYSTLPQLLFLLVGVTVVILQGTTGKRKSKKISTTVSKVN
>AP019400.1|BBI32964.1|2778519_2779047_+|hypothetical-protein
MPNIVQSVPYGYEPPVDREKGTLVFYDTFEETTDSELDLAVKCAVARSFTKLVLYPIHEETMRRMSKKAAVSPYYKREKRLYEWLLERGNKITTIDGWEGKRKKYTPIDSALRHLTETLAAPHFIFVTPETANLFASFASFEEWIVKIRLILIAEPHIIHPKLEQYRHRWDIVNY
>AP019400.1|BBI32963.1|2777258_2778311_+|ferredoxin--NADP-reductase-1
MTNQLELFDTTIIGGGPAGMYTAFYSGMRDLKTKIIDAQDQLGGRLLTYPEKVIWDVGGVTPILCEQLISQLVQQAQTFEPTIVLGQQIAGLEHQPDGTMILTATNGEQHWTKTVILAIGYGIRKMAKLEIEGADRYEVTNLYYTVQELETFRNKRVLISGGGDSAVDWANALEPIAASVTVVHRREQFGGHERNIKKMKESSVNVLVPYRVEKLHSKDGAVIDEVTITHMVTEEQEQLEVDAIIVNHGMKSDFGPIRDWGLDIGEWNIQVSERMCTNIPGIFAAGDTVNYGSKVGLIAGTFNDGVLALNSAKLFMEPEAHKYAYVSSHNEKFKEKNKALGIVVEEEEEE
>AP019400.1|BBI32962.1|2775508_2777224_+|multidrug-ABC-transporter-ATP-binding-protein
MIHRFFAYYQPYKRLFLIDFGCAILAGLIELGFPLVVNRFVDDLLPGGKWDLIVWASIGLLALYIFNTFLLYVVNYWGHMLGINIETDMRKKLFDHIQKLSFRFFDNTKTGHLMSRLTNDMMQIGEMAHHGPEDLFIAVMTLAGSFTLMMFINWKLALLTFIIVPAIIWLVVYFNGKMTKAIDQLFTDIGDFNARVEDNVGGIRVVQAFSNEEHEKDQFAVNNSRFRKTKLVSYKLIAKNGSISYMMMRFVTLFVMVCGTWFVIEGELTYGQFIGFLLLTNVFFRPIEKINAIIESYPQGFAGFKRYVELLDTEPDVSDAPNAVNLKELQHEIKFNKISFGYEGSSNVLSNIDLTIRKGETIAFVGPSGAGKTTLCSLLPRFYEVNSGAITIDGVDIRDVKLHSLRTQIGIVQQDVFLFAGTIRENILYGKLGATEHEVWEAARRAKLSEFIQAQPDGLDTVIGERGVKLSGGQKQRLSIARMFLKNPPILILDEATSALDTETEAVIQQSLAELSEGRTTLVIAHRLATIKNADRIVVVTQEGITEQGQHKELVAAGGVYSRLHKAQFST
>AP019400.1|BBI32961.1|2774433_2775468_+|iron-ABC-transporter-permease
MKDVSLNLSEQRQRKRSITVLTVLGILIVIVFIISMNTGYIRLSPKILVQTLFGMGTEKQSLILFEFRLPRIVISLLIGAGLAISGCVMQGISRNALADPGILGINAGAGLMVMLFISFYPSTAAAPVYLLPVLALVGAGLTATLIYTLAYKRHHGISPTRLLLTGIAVAAGISAATIVLTLRLSPDKYQFVATWMAGSIWGTSWKFVLALLPWILILVPFVILKARALNVLSLGDHLAKGLGASVEKERLILLAAAVGLAASCVAVSGGIGFVGLIGPHLGRRLVGPKHQMLLPVSALTGALLVITADTLGRWILQPSEIPTGIVVAVIGAPYFLYLLAKAKS
>AP019400.1|BBI32960.1|2773375_2774431_+|ferrichrome-ABC-transporter-permease
MNQIGNSVNGKAATKAVKLRTRPWAAVLILTLGIVALGLGIAVSISFGAANIKLSEVWAAIFQFNPDLTQHQIIQELRLPRVLGGAMVGASFAVAGAIMQGMTRNPLADSGLLGINAGAGFMLAVCFAFLPGLPFMYLILYSFLGAAVGAGLVYGIGSLAKGGLTPVRLVLAGAALSALLSALSEGIALYFRIGQDLAFWYAGGVAGTKWFQLKIMFPWFAIAIIGSIIISRSITMLSLGDDVAKGLGQRTAIVKLAGTVFVLILAGSSVAIVGAVGFIGLIIPHLTRYLVGVDYRWIIPCSAVLGSLLVVLADLAARMINPPYETPIGALIALFGVPFFLYLARKERREL
>AP019400.1|BBI32959.1|2772035_2773052_-|hypothetical-protein
MKFAKNFTTVLCMLALMSTLLLACGKDSGKQNNAEATGSNVQTSSPYASEKAAESTEEAPANTRKIKDYVGHEVEIPTSPQRIIYWGETLSDLIALDAKLVGAAYIFTVDSVYEDKVKQLTDVGFPINLEISIGLNPDLIITGDADEKVYEQLSKIAPTIVFDTFASLEDRMLLLGDYIGKKQEAEQWIAKYNDKTAAMWKQLHDDGVIQPGETASVFTYYPGDRLFVMARAGLPQTLYVPDGFKPTEKIQAVLDSNKGFAQLSMETLPEFAGDRIFILNPTEDESRQSTEAMMKSSIWLNLPAVKKGHVYYLDINKSNSDAIAREWLVDELPKMILK
>AP019400.1|BBI32958.1|2770252_2771914_-|hypothetical-protein
MINRAPTSAPLRSLIFHLSDIELQVQSVGWHSDKQTTTYHTLLIVTAGTGCLHMDSHIVPFTADKCYLLSPNRSIQIENGHDKALRFFQISFTAISNLNQQPEIYVENIFADRFEMIAYPFSRLIRLTEEIYAERSYESDIESFKQQLRFQELLGFIIEHNLPSDSLFNSTQSVESTIHYLQNNYTHNITVKQLAQLANMPHWQFTPIFQELTGKRPLDFLTELRINRSKELLIDSNAPLREIAHQVGFTDEYYFNRRFRHTTGVTPKQYARYKRNKTKVRDWTGHDVEIPAQPQRIIFFGETFGDLLALGIEAIGGGVFWIDHSAFKDRVKNVEDVGDPINPNILKALKPDLIIFANADERQYSKISKIAPTVTFNTFAPLEQRMNALGHLLGRKHEVEKWLDVYNTKAALAWKKLQTHINHGETASVFIFDHGERLFVMGASGLSSALYHPFGFQPVDRIQEIIDSGDGFMEISAELLPEYAGDRIFMLLPQKKDSKEAMEELMRSALWRSLPAVQKGRVYVVEAAKWNSGDAFTRELLLEALPRLMGKIS
>AP019400.1|BBI32968.1|2783563_2783713_+|hypothetical-protein
MKIWAGKKGEMSKLDQILYPAYLCLLQLAVCLARPELHYRIQERAVCSG
>AP019400.1|BBI32969.1|2784014_2784866_-|metallophosphoesterase
MLIYLIFGFVIISILICTYGVFIEPRRLTISRHTISSPLIPEGFHGITIVQFSDTHIGPHYSLQQLDELITAINSLQPDIVVFTGDLFDSRGKTNATDNDPTSILARIHAPLGKFAVYGNHDFGYTRKIRTSGSFLNQAGFKVIINDLLKVRLPAGEFITIAGLDDYVLGQPAARKTLSALKQEGFNLLLTHEPDVADSLAQYPVDLQLSGHSHGGQVHLPILGALIRTSLGRRYVRGMYSIQSKSRGLRPYLLFVNRGIGTTRIRIRIGSAPELSVFTLNRE
>AP019400.1|BBI32970.1|2785009_2786284_+|methyl-accepting-chemotaxis-protein
MNSQFGIVKKMVIGITLASSVTYGTSAFFLLVLKDQFTFLPGWLFVLLTLLFGVFWTGLFGFFAARWLLRPLLGLTLAAQEAAKGNLGVKVVTQPSNDEMQALGEAFTFMLDQLRTIIAGIKDNTRQTDSHVKELQDAIGQATGQIEQMTDESEAITSGTQTQADSAELMHHKAEALSVAADRMSEEAANARDRAWQMNRSAKQSEEVFHSLIAGMHQLSELNREAMDVVAQLSSYANEIGTISNVVGDIADQTHLLALNASIEAARAGEEGRGFDVVAQAVKSLADESAGSVKTIRGLIRQIQGEVTRAVGHIRTQYEVSEREAKMGEQFATAFHDVNMEAEQVVTIVEAVASGLTLQARQATEQLNEARRIAQVAEQIRLGAQQVFSASEEQTAVMQEISASTDNLRAKSSELRSKADYFRS
>AP019400.1|BBI32971.1|2786461_2787001_+|isochorismatase
MKAIIVIDYTVDFVVGNLPVGQPGIDIEQRIVQLTKQFAEQKDFIVMAVDLHEEEDVFHPETKLFPPHNIRGTAGRDLYGQLGSWYSDNKQLVYWMDKTRYSAFCGTDLELQLRTRGIEEIHLVGVCTDICVLHTAVDAYNKGFRIVIHQDAVASFNQPGHDWAIGHFEQTLGATVVSK
>AP019400.1|BBI32972.1|2787050_2788493_+|nicotinate-phosphoribosyltransferase
MNETNLTLHTDKYQINMMYAHWKQGSMNEKVVFEAYFRKLPFGNGYAVFAGLERMVKYISSLAFGDDEIAFLRTQEEQYEEEFFEELRRFRFTGNLFAMQEGTLVFPNEPLFRIEARVFEAQLIETAMLNFMNYQTLIATKASRIQRVAKGDKLLEFGTRRAQEADAAVWGARATYIAGFHATSNMRAGMMFGIPTSGTHAHAWIQGHDSEVEAFRKYAEVMPDHVTLLVDTYDTLKSGVPNAIIIAKELEQRGKKLKGIRLDSGDLAYLSKRARAMLDEAQLPYVKIVASNDLDENIISELKAQGAKIDIWGVGTQLITAFDQPSLGGVYKLVAREKEEGYVPVIKISGNPEKISNPGIKEVFRIINKQTGMAEADYMSLPDESDFPNGEAIKLVDPLHPHMVKKIESYEAIPLLQPIFKNGKLEYRLPSLEEIRSYHQKQMALFWPEYLRKLNPEMYRINFSPAILELRMKLLKQYQH
>AP019400.1|BBI32973.1|2788574_2789417_+|hypothetical-protein
MSKIKIVTDSTVDLSDESIKEFGIEVVPLTICIDNKTYIDRVDITPVEFIEKMKQSKELPKSSQPSTGAFLEVYDRLGNEGYEVLSIHMTGGMSGTVRSASIAAEMSETNVRVVDSRYISKALSFQVLEAATMAREGRSMVDIVARLEEIRLQTQLYVVVDTLDNLVKGGRIGKGRAWIGSLLKIKIIASLAGGEYTPVAKVRSRAHIITYLAKQFTEDVKGKTIKGVGIVHAEGFELATKLKEAIIELTGYDKINIEDTTPVISTHTGVGAISFMYYLE
>AP019400.1|BBI32974.1|2789517_2790033_+|hypothetical-protein
MENNTTNVNHTANVNHTPRRANFYRRRNTPTYTFMAWGAFILAFGFEFGGIYSLKQPLSVRGYYAAVAILLIITSFVLQKVIRDNDEDNYLREQNYQHRKRNTSAFTFLSWIGFILAILFEFIGLTTLEEPFYVVGYYAIAAAFLIVTSLVLQKTVRDNEEDKINNDNYEA
>AP019400.1|BBI32975.1|2790153_2790393_+|hypothetical-protein
MKNVTVLHYDAFSDQPNKGNPAGVVLDASQLSEKDMQSIAYEVGFNETVFVVDSQVADLRLRYFTPGHEINLCGHATMA
>AP019400.1|BBI32976.1|2790368_2790842_+|hypothetical-protein
MWACNYGIDEDKPIVYGSTGAWTLLIPIKNIESFSKMKPINAMFPEILTELPKSSIHPFCLQAYDLKSFMHARHFSSPFSGTIEDPVTGTASGVMGSYFLKFLNPSLDSIVFDVEQGQEVGKEGRVHVEVNRAESDLLEVFISGTAVYVKDLHIEYV
>AP019400.1|BBI32977.1|2791029_2792196_+|hypothetical-protein
MLLLVVNGLFITANALSGTFLGVYLWKESSDFVLLGWFTLLTHVFMALTFWIAGNGVKEGNKMIILRAGIGVSAAFYGLVLLLGKSAIQYFWLLGVVQGIAFGLFWLTFNVIYFEATNAANRDRFNGWAGVIGSIVGMIAPWCSGFLISRMAGESGYRVVFMISFGLFLAGIGVSFLLHKRTTEGSYDWLLTLRALRKPHASWRPIVVALAAQGLRESIFGIIIGVLVYIQTGSELQLGNFALITSAVGFVSFYVVGKWLKPAWRGWGMLIGSILITIVIVPFFFGISYTTLLIFGIGVALFLPLYTIPMTSAVFDIIGKNEESARQRVEYIVMRELALNAGRIVGMVIFIVTLYISSAPTVINWMLLITGSSPLLSWLFMRNNLKNA

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Crispr_ID: AP019400_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_14

2812519-2812691

Orphan

Consensus_repeat	Method
TTCGAAATAATCGAGCAAC	PILER-CR

3 spacers

The CRISPR arrays of AP019400_14

>merge|AP019400|14|2812519-2812691|PILER-CR
CGAAATATTCGAGCAACTGGTTTGTGAAAGGGCGCGATAGTGAGGAGTTGTTCGAAATAATCGAACAACAGGACCCCGTAAGGCATGTTTGTAGTGGAGGTATTCGAAATAATCGAGCAACGAAGCTACGGAAGGCCTAATTGTGAAAGAGCTCTTCGAAATATTCGAGCAAC

>AP019400|14|5|2812519-2812691|PILER-CR
CGAAATATTCGAGCAACTG	GTTTGTGAAAGGGCGCGATAGTGAGGAGTTGTT
CGAAATAATCGAACAACAG	GACCCCGTAAGGCATGTTTGTAGTGGAGGTATT
CGAAATAATCGAGCAACGA	AGCTACGGAAGGCCTAATTGTGAAAGAGCTCTT
CGAAATATTCGAGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI33004.1\|2816297_2818031_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226644
AP019400.1\|BBI32993.1\|2805294_2806419_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|223745
AP019400.1\|BBI32995.1\|2807536_2808409_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224007
AP019400.1\|BBI33000.1\|2812716_2813796_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
AP019400.1\|BBI33005.1\|2818023_2819232_-\|glycine-betaine-transport-ATP-binding-protein-OpuAA	unknown	unknown	gnl\|CDD\|226643
AP019400.1\|BBI33003.1\|2815409_2816216_+\|phosphoenolpyruvate-synthase-regulatory-protein	unknown	unknown	gnl\|CDD\|377080
AP019400.1\|BBI32996.1\|2808401_2809259_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225117
AP019400.1\|BBI33001.1\|2814048_2814702_+\|putative-transaldolase-2	unknown	unknown	gnl\|CDD\|234947
AP019400.1\|BBI32990.1\|2803073_2803730_+\|lipase	unknown	unknown	gnl\|CDD\|238872
AP019400.1\|BBI32998.1\|2810057_2811119_+\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
AP019400.1\|BBI32997.1\|2809255_2810023_+\|D-mannonate-oxidoreductase	unknown	unknown	gnl\|CDD\|236216
AP019400.1\|BBI33007.1\|2820152_2821109_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
AP019400.1\|BBI33006.1\|2819460_2819781_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33009.1\|2821682_2823422_+\|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
AP019400.1\|BBI32992.1\|2804184_2805111_+\|transporter	unknown	unknown	gnl\|CDD\|223751
AP019400.1\|BBI32999.1\|2811274_2811919_+\|ketohydroxyglutarate-aldolase	unknown	unknown	gnl\|CDD\|188632
AP019400.1\|BBI33002.1\|2814879_2815398_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|341387
AP019400.1\|BBI32994.1\|2806431_2807505_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|223745
AP019400.1\|BBI33008.1\|2821163_2821445_+\|putative-membrane-protein-YdzA	unknown	unknown	gnl\|CDD\|378962
AP019400.1\|BBI32991.1\|2803773_2804079_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI33004.1\|2816297_2818031_-\|hypothetical-protein	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	5.10538e-138
AP019400.1\|BBI32993.1\|2805294_2806419_+\|oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.12138e-60
AP019400.1\|BBI32995.1\|2807536_2808409_+\|hypothetical-protein	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	6.78696e-24
AP019400.1\|BBI33000.1\|2812716_2813796_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	4.01168e-138
AP019400.1\|BBI33005.1\|2818023_2819232_-\|glycine-betaine-transport-ATP-binding-protein-OpuAA	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
AP019400.1\|BBI33003.1\|2815409_2816216_+\|phosphoenolpyruvate-synthase-regulatory-protein	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	1.44747e-135
AP019400.1\|BBI32996.1\|2808401_2809259_+\|hypothetical-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.09938e-22
AP019400.1\|BBI33009.1\|2821682_2823422_+\|multidrug-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.10652e-169
AP019400.1\|BBI32990.1\|2803073_2803730_+\|lipase	gnl\|CDD\|238872	cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	6.08126e-58
AP019400.1\|BBI32998.1\|2810057_2811119_+\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
AP019400.1\|BBI32997.1\|2809255_2810023_+\|D-mannonate-oxidoreductase	gnl\|CDD\|236216	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.	1.75691e-92
AP019400.1\|BBI33007.1\|2820152_2821109_+\|pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.00607e-74
AP019400.1\|BBI32992.1\|2804184_2805111_+\|transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.31639e-26
AP019400.1\|BBI32999.1\|2811274_2811919_+\|ketohydroxyglutarate-aldolase	gnl\|CDD\|188632	cd00452, KDPG_aldolase, KDPG and KHG aldolase. KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.	3.8344e-64
AP019400.1\|BBI33002.1\|2814879_2815398_+\|transcriptional-regulator	gnl\|CDD\|341387	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.24589e-51
AP019400.1\|BBI32994.1\|2806431_2807505_+\|oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.55784e-30
AP019400.1\|BBI33008.1\|2821163_2821445_+\|putative-membrane-protein-YdzA	gnl\|CDD\|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	7.8813e-26
AP019400.1\|BBI33001.1\|2814048_2814702_+\|putative-transaldolase-2	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	4.33644e-140

>AP019400.1|BBI32999.1|2811274_2811919_+|ketohydroxyglutarate-aldolase
MPSEIMQILSREKIVAIARGIPVESINATAKALADGGIVLLEVTLNTDGALKMISKLRSDFEGRLRIGAGTVLDLGQAKEAVAAGAEYLISPNLDEEVIYYGVEQGVEVWPGTMTPTEIVRAYKAGASAVKLFPMGSLGINYLKEVRGPLNNIPMIATGGVTLQNINSVLEAGAIAVGLGGKLIDTQLVKEGKFDELSQLARSFVNEVQGIKSV
>AP019400.1|BBI32998.1|2810057_2811119_+|mannonate-dehydratase
MQMTFRWFGENDPVKLWQIRQIPGVTGIVSAIYDVPVGEEWPLESIVQLKEKIEAAGLSLSVIESVPVHEHIKLGLPGRDQYIENYGKTLRNLAHAGIGIVCYNFMPVFDWTRSQLDYELEDGSNALIYEEEVVRRMNPLSGELQLPGWDSSYRKEDLRVLFEQYSTVDEEKLWDNLSYFVKAIMPIAEEVGVLMAIHPDDPPWPIFGLPRIIKDEAALQRFVGLYDHPVNGLCLCSGSLGANPDNDLPALIRHFGAAGKINFMHARNIKHTGERSFQESAHLSSAGSLDMAEIVRALRDVNYAGPVRPDHGRMIWGETGKPGYGLYDRALGAVYLNGMWEALTKERAALNKE
>AP019400.1|BBI32997.1|2809255_2810023_+|D-mannonate-oxidoreductase
MNLFDLSGRTAVVIGGSSSLGGAMAEALAAYGAAVALTGRKADNAEPIRQRIESAGGKARCYAVEPTSKADLEHLLQEVAAWTGGVDILLNCPGVNSATSFFDIGEEEWDRIIDVNAKSLMLSCQVFGRYMVERGQGGSIINLSSVSSTTPLSKVFTYSVSKAAVNNMTQFLAREFAPARVRVNAIIPGFFPAEQNRTILSEERVSSIMSHTPMKRFGDPTELQGAVVYLASEKASSYVTGSLLRVDGGFGAMTI
>AP019400.1|BBI32996.1|2808401_2809259_+|hypothetical-protein
MFEFNYRSIGMFEPIFHSHTFYEVYYFHEGKCNYLIGDQIYNLSPGDLILMNGMTLHCPKVDPEIPYIRSIIHFDPAILRPYLELPQAVPVMRPFEQFKNYRLCLRGKEKEELEQILLVMLSHQQRGDKVGESRLLLAFVDMLHFIYDQCLQPLGEQREVPSDKEKTVQEIIALLEDVYMDDELSMELLHSKLHLSKSYLAKIFKDVTGVTLFEYVYRKRINEAKILFLLHPSLSVTEVSFRLGFKHLAHFSRLFKQQVKITPEGYKKELKKDRQLHKQLEGEGN
>AP019400.1|BBI32995.1|2807536_2808409_+|hypothetical-protein
MIKLSVFTVSTPELSPEELAAKAKQAGLQGIEWRYKETPADVANQVPSFWGNNQCTISPSGGEVELDRFKRATELQGLTTVSVTPYLQAGDIVGTEQVLKAAQYMGAPFIRLGVHSYDRNRPFNELFEDELVYLKASEELCRQYGVKGLVEIHHGTLAASASGARRLVEGLDPQFIGVLFDPGNTVHEGFENYRMALEILGPYLAHVHIKNAGWKIQGKAEDGSTIWHSDWEGLREGMVPWRQVIADLLAVGYEGYLGVEDFSRQFADSADMLQNFSSYIGDLLAELQHV
>AP019400.1|BBI32994.1|2806431_2807505_+|oxidoreductase
MSQANGMNYAPQGKPSSVVGRGEFIFAAMALDHGHIYGMCNGLQEAGASLKWVYDPDPDKVRQFIEIYPHARVAQSEQQILQDPEVALIAAAAIPNERGPLGLKVMEHGKDYFTDKTPFTSLEQLEQARAAVARTGRKYAVYYSERLHAESAVFAGQLIKDGAIGRVVQVLGLGPHRLNATLRPDWFFRKEQYGGILCDIGSHQVEQFLYYAGCKDAKVVQSKVANYNNKGYPELEDFGDANLIGDNGATNYFRVDWLTPNGLSVWGDGRTVIMGTNGYIELRKYVDIARDAQGDQLYLVNGEGEFHMSLRGKVGYPFFGELILDCLNKTENAMTQAHAFKAAELCLLAQSQAIRIE
>AP019400.1|BBI32993.1|2805294_2806419_+|oxidoreductase
MNKLRIGIVGLGNMGMEHAKYLIENQVKNAQLTAVSDISLERLKQVAEQWGSDVQRFESYEALFKSGTVDAVMLCTPHYDHPRLAIEAFTCGLHVLVEKPAGVYTRQVKEMNEAAAASGKIYGIMYNQRTNPLYLKLRELISSGELGEIRRTNWIITNWYRSQAYYNSSRWRATWAGEGGGVLINQAPHQLDLWQWTTGLMPKRIRAFCAFGKDRDIEVENEVTAYVEYENGATGVFVTSTHETPGTNRFEITGDRGKIVIEDDKMTFWRLRQLEPEFNRDNTSAFAQPECWKFDIPVAASVTQHLEITRNWTEAILQGTPLLAPGEDGIKGLTLSNAMLLSTWTDNWVELPIDEDLFYDKLQEKIRLSTKAIR
>AP019400.1|BBI32992.1|2804184_2805111_+|transporter
MDIFVHILLNNILPLSIIIGLGIVLHKIFNLDIKTLSKMNFYLFSPAIMFELLYGTAISLQLFGTVMLFFVLFMLAQYLLLEIVIRLRKYEGGKRAAMRNSVLFYNSANYGIPINQLAFAGNAYTLSIQIIIMMMQSLIPNTYGIYSVNAHKANWRDTLRVILSMPVIYVIPIALMMRGLHVPMPEFLSLSIGYLSHAFIGTALFTLGVQLGSMKGGISRKLAMDVGIASALRLLAGPLLAWGVVLMLDLDKMLAAALIVSSAVPTSLSSVLLAVEFDNEQDFSSQTVLVTTALSIVTVTAVIYLLRI
>AP019400.1|BBI32991.1|2803773_2804079_-|hypothetical-protein
MAFGITRNELNEWKKSVTRGETAFLTHYWYDARFPEIQTVTKVGNANLERLKNWCITHGLNPKYIHLRPPFPHFDLMGSKQREILIQENLTHHLERFKINK
>AP019400.1|BBI32990.1|2803073_2803730_+|lipase
MLLQKGQKLLFIGDSITDCERARPAGEGLFNALGRGYVSLVDALLQAVYPELGIRVINVGSSGNNVLDLKARWQEDVLDRKPDCLSIMIGTNDVWRQYDTPFITEGHVYADTYEATLRSLVKETKPLVSNLVLMTPFYLERNEQDAMRHTMDEYGAIVKKIAEESDSLFVDTQAAFNLVLKDLYPATLAWDRVHPSQAGHAVLARAFLNKIGFEWNRG
>AP019400.1|BBI33000.1|2812716_2813796_-|adenosine-deaminase
MDMSRLLKILPKVDLHVHLDGCIKPDTLIKLANDQGKSLPSYDTEELIPLVQVVEDCPNLTEYLSKFDFVLPFLQTGEALEQTAYEAVEQAHEHNIKYIEVRFAPLLHRENGLTTDDTIHHVIEGLKRGEASFGIKSRVIAICMRNHTVEENLQVIEAASHFIGHGLVAVDLAGDETSFPAALFREVFELAQNLNIPITIHAGEAAGPSNIEEAAIRLGAQRIGHGVRLNEDKNIFNLIRDQQIPLELCPTSNIQTKAVSGWDAYPIKDYYDQGIICTVNTDNPGVSGTNITKEYQLLTEKFGFTLHEITVLILNGVEASFLPADEKAALKRDFEEILTTLGVYDLTDFSKKLQDDPNG
>AP019400.1|BBI33001.1|2814048_2814702_+|putative-transaldolase-2
MKFYLDTGNVEEIKRIVKLGLVDGVTTNPSLIAKEGRIFKDVIKEICAIVEGPVSAEVISLDVEGMLKEAHEIAQWAPNVVIKLPMTEAGLEATHQLSQEGIKTNVTLIFSVAQGLLAAKAGATYISPFVGRLDDIGVDGMALVRNLRQVLDQYGLASEIIAASIRHIGHFEQAALAGAHIATIPGTLLPVLWKHPLTDNGIDRFLKDWEKVPKVQG
>AP019400.1|BBI33002.1|2814879_2815398_+|transcriptional-regulator
MLVMLGYIDAKPKVGYFLGKVMTSEGQQSEKLMNLKVRDVMNRPVVIVESATVNDAVISLFVENTGFLTVTDEQGALTGMVSLKDLLKVTLGNPNAAAIPISMVMTRAPRLALVSPDDTVLEAAKKMLHHQVGGMPVVVSHGDHNRLEVVGRITKTNMTQALVDLTSGFIAE
>AP019400.1|BBI33003.1|2815409_2816216_+|phosphoenolpyruvate-synthase-regulatory-protein
MSEQFQKVIFVCSDAVGETAEAVARATARQFATEQVKIKRYGNIKHEDEIKSIIHEALQAGGFIAYTLVQPELRETMREETIKLGVRAIDVMGPMMQAFIDTFNDSPKYKPGLLHEMDENYYRKIEAVEFAVKYDDGKDARGLLQAQVVLVGVSRTSKTPLSIYLAHKGIKTANYPLTIEVKPPQELFTATNLVVGLSMQPERLLKIRTERLKALGLPSQANYASMDRIEKELKFASDIMERLKCPIIDVTEKAIEETSGLIMELLVP
>AP019400.1|BBI33004.1|2816297_2818031_-|hypothetical-protein
MPKLPLDRWVEGIVDWLAINLSFIFDLLSSVIGGTVDAFSNLFHILPAWVVIILLAALAYRLGRWTLALFAIIGLVLIWNLGYWDSTMDTSALVLTASLLSIIVGLPLGIACARSRKLQSILTPLLDFMQTMPAFVYLIPAVTFFGLGVVPGVIASVIFSISPTIRLTNLGIQQVPEDLIEAANAFGSTPRQKLLQVQLPLAMPNIMAGINQTIMLSLSMVVIASMIGAQGVGADVYRSVTQLNTGKGFEAGLAIVILAILLDRMSQKVITPNRRGKKQGFKKAITISISLIIILVASWAYTYIENGSSKSGNRVGDQVGYRIIGIDPGSGLMKASAKAIEDYELAEWKLLEGSGTAMTAALDKAYKAKEPIIVTAWTPHWMFVKYDLKYLEDPKQSFGGSEQIHTIVRLNLNKDHPTAYRFMDQFNWKPADMEKVMILISGGATPDEAAAQWVKENPDLVQSWIKDIPAVSGQKLKLAYVAWDSEIASTHVIKNVLENKLGYKVDMLQVEIGPMWAGIANGDADAMIAAWLPTTSIDYYNKYKGKFEDLGPNLSGTKLGFVVPKYMDIDSIEDLKK
>AP019400.1|BBI33005.1|2818023_2819232_-|glycine-betaine-transport-ATP-binding-protein-OpuAA
MAIVEVKDLTKIFGAEPDKALALLAQGLSKKEIFEKTKHTIGVNKVSFHIEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTSGSVLIKGKNIVSMNPQQLRDVRRQSMAMVFQKFALFPHKSIVENIEYGLEIKGMEKQTRRDKALHSLQLVGLQGLENSYPDQLSGGMQQRVGLARALANEPDILLMDEAFSALDPLIRRDMQDELLELQQNLKKTIIFITHDLDEALRIGDRVALMRDGSVVQIGTPEEIMINPANKYVARFVEDVDLSKVLTASHVMRRPETISPDRGPRVALQLMHESGVSNLYVVDKSKRLIGAISAEDASEAIRKGQSLMDIVVRDVPVFRPDQLLNELFEVVGNTRIPAAVVGENGRLLGIIIRGAVLAALTSSTPNVEVGGDQNA
>AP019400.1|BBI33006.1|2819460_2819781_-|hypothetical-protein
MNVALQEKNVYEDFEPRQDTLFFKVGAHGLISFHGRNYNIKKRLSADERNNLITDSATFFRVSSDCYVNVKNISVIGDHDIFFGDTSKRLSCSQRKQQMIRQMLDK
>AP019400.1|BBI33007.1|2820152_2821109_+|pseudouridine-synthase
MINRKVTPSEGGKRLHRYLRSLMPNIPLGQIYKMIDNGKVKVNGKRKNQNYELVAGDELVLYVEEAAYQEASIGQKKTKYVGVNANINVIYEDAELMVVNKPVGMLTHPDQADQKDTLVNRVHAYLYRKGELDSPLFMPATANRLDRNTSGIILVGKTAGMLHQLNQWIQKHELQKYYVTIVEGRLEGEGILSGELIRDEKKNRTHVVGDKTNIERHGGADQVKSAETRYRVLQTGNAYSLVEIELISGRTHQIRTHFQDIGHSLLGDIKYGGKRFGDVNYQLLHAWRIVLPGEREFKAPLPSEMRVVAERIGLHVNL
>AP019400.1|BBI33008.1|2821163_2821445_+|putative-membrane-protein-YdzA
MLSTPIKRLRFIGYFEAGSFLILLLIAMPLKYAFDTPEPVKIVGIIHGFLFALYLLAILNAFIARKLSLGMSLVAVIAAFLPFGPVLLDRKIR
>AP019400.1|BBI33009.1|2821682_2823422_+|multidrug-ABC-transporter-ATP-binding-protein
MLKLFRFLKPYRWAVAAVMVLILLQSLSELYLPTLMADIINDGVVKGNIPYIWKIGGFMLAVTIVGTIVSITASYVSSRIASGFGRDVRSKTFRHVENFSLQEFDKIGTASLITRTTNDITQVQTVLMMMMRLMVAAPMMCIGGLIMAISKDAHLSLVFVGAIPILALTIFLIASKGIPYFKVMQKKIDKINLVLREGLTGIRVIRSFNRFEHETKRFKEANHDLTQTAIKVNQIMAFMMPMMMLILNFSSIAIIWFGGIRVSEGNMQVGDLMAFLQYAMQIMFSLLMVSMMFVMVPRASASAVRINEVLNTEPVIVGKKGEGNVQGEEQNARGLVEFDNVSFRYPGAETPAIEGISFQASPGEVTAIIGGTGSGKSTLISLIPRFYDIELGAVRIDGSDVRDLSIDELRSKIGLVPQKALLFTGSVSDNIRYGKTDATEDEISQAAITAQANDFITGMPEGYASPISQGGSNLSGGQKQRLSIARALVRKPLIYLFDDSFSALDFKTDAKLRAALRSETTEATVIIVAQRVSTVMDADRILVLDEGRIVGNGNHRELMESCSVYREIVSSQLSEEEIA

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Crispr_ID: AP019400_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_16

3696238-3696343

Orphan

Consensus_repeat	Method
ATATATTAAAATAAAAAGCACTACATTATTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_16

>merge|AP019400|16|3696238-3696343|CRISPRCasFinder
ATATATTAAAATAAAAAGCACTACATTATTTCGAATTCACGATAAATAATGTATATGTGCGTACAAATGCATAAATATATTAAAATAAAAAGCACTGCATTATTTC

>AP019400|16|10|3696238-3696343|CRISPRCasFinder
ATATATTAAAATAAAAAGCACTACATTATTTC	GAATTCACGATAAATAATGTATATGTGCGTACAAATGCATAA
ATATATTAAAATAAAAAGCACTGCATTATTTC

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI33867.1\|3701079_3701928_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33863.1\|3698554_3699022_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
AP019400.1\|BBI33855.1\|3688801_3689074_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33854.1\|3688160_3688757_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33849.1\|3679071_3679662_-\|ribosomal-protein-serine-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
AP019400.1\|BBI33858.1\|3694632_3696195_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
AP019400.1\|BBI33864.1\|3699086_3699767_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
AP019400.1\|BBI33861.1\|3697386_3697659_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33868.1\|3702311_3703079_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379736
AP019400.1\|BBI33852.1\|3686117_3687941_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225814
AP019400.1\|BBI33853.1\|3688033_3688195_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33866.1\|3700448_3701087_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33865.1\|3699756_3700452_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33862.1\|3697854_3698421_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33869.1\|3703371_3703602_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33860.1\|3696754_3697159_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI33851.1\|3685182_3686121_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226456
AP019400.1\|BBI33850.1\|3679990_3685090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378188
AP019400.1\|BBI33857.1\|3691179_3694332_-\|transporter	unknown	unknown	gnl\|CDD\|225272
AP019400.1\|BBI33856.1\|3689459_3690407_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366736

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI33863.1\|3698554_3699022_-\|N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	9.03501e-11
AP019400.1\|BBI33856.1\|3689459_3690407_-\|hypothetical-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	0.00919906
AP019400.1\|BBI33868.1\|3702311_3703079_-\|hypothetical-protein	gnl\|CDD\|379736	pfam15595, Imm51, Immunity protein 51. A predicted immunity protein with an alpha+beta fold and a conserved tryptophan and Dx[DE] motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-RES or Tox-URI1 families. Proteins containing this domain are present in heterogeneous poly immunity loci in polymorphic toxin systems.	1.82945e-26
AP019400.1\|BBI33849.1\|3679071_3679662_-\|ribosomal-protein-serine-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.67502e-32
AP019400.1\|BBI33858.1\|3694632_3696195_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.93423e-69
AP019400.1\|BBI33864.1\|3699086_3699767_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.46847e-61
AP019400.1\|BBI33851.1\|3685182_3686121_-\|hypothetical-protein	gnl\|CDD\|226456	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].	2.29113e-50
AP019400.1\|BBI33850.1\|3679990_3685090_+\|hypothetical-protein	gnl\|CDD\|378188	pfam09479, Flg_new, Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.	1.09409e-08
AP019400.1\|BBI33857.1\|3691179_3694332_-\|transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	7.06855e-81
AP019400.1\|BBI33852.1\|3686117_3687941_-\|hypothetical-protein	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	9.95872e-47

>AP019400.1|BBI33858.1|3694632_3696195_-|MFS-transporter
MIQSKRKWWVLVTVSLTVFMAMLDITIVNVALPDIQQAFSSNFSNLQWVLNAYTLVYAAMLLPVSKLGDIIGRKKVFLLGLGIFMIGSLTSGLANSDTWLNIFRGFQGIGGAAMMSLSLTIVTSSFPEKQRGLALGIWSSAVGLAIAGGPLIGGALVDAFGWRSIFLVNIPVAIVAILLGMFVIKESETNRNGKIDIWGLIFSTAMIFTMILAFIQKSVNGDYAWTDWHILSLLGLSLILLIAFIVTERKVEQPMIELSIFKNWTFNGANIAAFVLGAGLYGGFTYLTILMQNYMGYSAFDTGAKMLLISGFTIVLGPIAGIISGKIGNRWLVSGALFIGAIGIFVMRYMIKAPFEWSYLMPGFILLGISNALVNPPITTAAMSSVDKEYVGMASGILNVFRQLGISFGVVLLGIKLTEGYNDSLNTNIMKVANIPAEFRNQMLDVFHKAGAFGGSQLFDSKQVEVFKDVPAFDEMKTIVFNAFNAGMQNVTLLIGIFLLIGTFASAILIKNKKKTQNEN
>AP019400.1|BBI33857.1|3691179_3694332_-|transporter
MRIVLKFRWLVLAVWLIAAVGLMATAPGMQDLVRTKGQINVPDGYSSTVARELEKAIGASDSSGASSGMPTVLVFHKDGGLSAADLAEVKGGIDKLKSDGKSIGVLTVITHFDTKELAEQMVSKDGNTIIALVNVETGDREISELRDGLYGAISDVKVEHYYTGNWLISEDVLQSSQDGLKKTEFITLGFILVILFVVFRSALAPLVPLVAVGFTYLISQSIIAFLVEYFDFPLSNFTQIFLVAVLFGIGTDYCILLISRFKEELSHSGGDKTEAIVNTYRTAGRTVLFSGLAVLVGFSAIGFSTFMLYRSAVAVAVGVAILLIALFTIVPFFMAVLGTKLFWPAKGSLEHKPSKLWGTVGKFSLKRPLWALIILAVIIVPFLTAYKGTISFNSLDEIGDKYDSVKAFNIISDSFGPGDSLPTTVIVKTNKPLDTPEGLATLEQVSRELANTQGVKAVRSATRPTGEVMEQFLVSDQVVILEDGLGKSGEGIEKIRNGLSEASSALNENAPKLNEAVDGAGQLVVGANKLKDGIVQLGDGLKRIQQGLKDGSVGAGELSEGMKQAQTSAEQLAGASKQLQASYAKLGGGLGQLARAYTAIASEQAKLADGLSGVKQGLTGLQESYPELQNDENYKQALSTLAQLQAGASGISGQLKQLNAQLVGISSGMTKANAGFLHAAEGQSSLVAGLGKLAAALSELQKGIAQAATGQGQIVSQLPSLTQGFNELTDGQKELRGGFASLNDQLGELTSGLDQSVAGLTQVTDGLALAGGYLNGLAGSPNKQMTGWYIPEEAIANEEFQTALNVYMSEDRQTAKFDVVFDSNPYSQETMAQIDGLESAVNRAIQGSAYSESQVAIGGITSMNNDLSNISKADYSRTVILMLIGISIILIILFRSIVMPLYMIASLLVTYYTSMAIAEVIFVRLLGQSGISWAVPFFGFVMLVALGIDYSIFLMDRFKEYRHLSPQEAILEAMKNMGTVIMSAAVILGGTFAAMLPSGVMSLLQIATIVLCGLFMYALLMLPLFIPVMVRTFGPANWWPFMGRRPNEEQ
>AP019400.1|BBI33856.1|3689459_3690407_-|hypothetical-protein
MTDAERGWSGAEVRRIEVTYENGQKESVIFKEAALKERMAMKTLTDQGHRNTPASFSLDIETDEPRWMAIEDLGSVKSPPSCVDWSPRVAEALARIHSRNMCRGQEMLWLPHADGHYWKDYLVTQVSVDHFETLMDQNPEFCREFGAYLPSLRDKANAFARDMEALYDEKESLTLTHGDLQSVDGSHIHYYNGKPYFIDFGWCYYAPFYIDLASYFNLEHAKVYYNKLIANDISLSYDDFYERLRAAFRYCGLIYLCPSIRQWSLGPTELTGKRLLHMLKIVLSGEFPERRIDYSSELFSNLLKEHKNGTLHKLN
>AP019400.1|BBI33855.1|3688801_3689074_-|hypothetical-protein
MGKNIYKILGTIFMITSGLIYTTERIIEKLSGAIHAAGFASHGASVPRTFNYDGFFDNFFFWFFFLIGFLILSYGFTKTTSKLETDQLKK
>AP019400.1|BBI33854.1|3688160_3688757_+|hypothetical-protein
MCSTVIIVVAIIILYRFLTHEKLSDYIVVNDGVVVTKQFSVKSQTAQQNTSAKGSIFVWGDKAMAKRMRIVTSFEIDPKDFGGMTIYIPKKWYIANILSSYPENQKTSLQPYASDRDMSSLGDDWRNQVEVGVTYVGNPAGGGTGTVIIDLVPDRKAILPSESFIIGVAVGSSTKGGVRSIGVDSIKIPISLDSGSKN
>AP019400.1|BBI33853.1|3688033_3688195_-|hypothetical-protein
MIATTIITVEHITKIFLDDLRMIPPIQFLPFIFIVAGMVTLIIIYVDIDFDSN
>AP019400.1|BBI33852.1|3686117_3687941_-|hypothetical-protein
MRSESTKFSMKIMTICLAILLCTAFVFVIYFQDANKSKDDISMEILQDNSGNMTLSDVKVSDQFVALPGNYSKVGYSPDRLWFKIKLNQYNADEINYLTINNPLFEDATIYLPTSNDYEIKHFGFAYKSDSDEIGYVYPAFKIPSHFDNNQYIYMTSKSIYGQNFIVQVVNDDHFRKTSMINVWAGGILLGVLAALFFYHLVMGIAIKNKTFIKFCFFVFATLLWNAATTGLLNITGFKYAYWIADYSAGIGILMSLAIVIFMRAIFQTQTRFPKIDFCFKLLIVYFPITLLVFFFINNKVGAFGAGASSMVYVLYFMIMVKGISNKMIRSPQLITAWLLCFMSVILYYLMVFGVLPQSYIMIYYLFFLSCVSAIAFALSLAEIINHLNEEKQRNQILFENSEIQSRQFELAFIRAQMDPHFVHNTLNVIEGVIAENKEKAGSLVNDLSHYLRNIFDYSNSERYISIHEELDAVKFYVRIEQARFPGKIYVNYEIDPGIQLKVPRFVIQPLVENAIKHGIRKRKIAGTVTIRVKELEQGYLIAVEDDGVGIESADKYNLLEYSPNKGIGLASINARLKAEYGTQLQIDSEKGKGTTVRFDVPIKEQP
>AP019400.1|BBI33851.1|3685182_3686121_-|hypothetical-protein
MKVIIVDDEYYALRNLKNKLEKIADVEVVAMYEDPATALEEVSSIQPDLAFLDIEMPEIDGISLLGRMFKKRPEMDFVFTSAHHAYVSDTLETKALDFLVKPVKYEQLYVTLEKIKKIRSKSSVGHKIEMKCFGDFSVLIDGKLIDDNWRTKKTEELLAYLLCMNGMYVSRERIIHDLWPDLEMDRGYANLYTTQYNLKKRFEAFGIQHLIKSRLGNIWLNIQDIKVDLLEFNHFSNSYNEDKSKMEILEQMVELYRGMLFENKLYSWTLSIQQSYEVSFDNALNTLILFYRERGDEKKARYYEMKKNALNQ
>AP019400.1|BBI33850.1|3679990_3685090_+|hypothetical-protein
MYKRLLSLLLLSCILVTSITPAINAASPTSVEAAATNQTTAQSEPQSSFEDVTPSAWFYDAVMFVKQNGLFSGTSKERFSPDATMSRAMFVTVLGRIAKVDVSQYKTSAFTDVQTGAWYAPYVQWATESGIASGTGSNRFSPDAAISREQMAMLIFKYFESNSIPYQTTSLTTKPKDVSDISPWAVDAAGKLWQVGLFGGDANGNFQPHAKATRAEAAVIFMRTDKVARSSDGTTYTVTFNPNGGSPIDSLSLKRGESLNQLPLAFKQGSIFNGWYKDRAFTQPVMNGDSVKSDMTLYAHYIASSDDAVIFTPNAYAMDQASNFRIAVKDSTGKMTAAAVQAGMTFKSPSNPDFTGIVVTGSKGSFTVAAKSGAFEEGSTYQITLKDTSLAFTGKDATTRNYIFSIAKKEVMRLPLNPYMIYLKFSDISQMSLNGAAVASPSIAVMSANVGGGSGPNPAPAVSGTFRYDGNTRLKVGDTVSVYEGTRPDLRTLSTSDDGDIAYVAITSINGNIYSYTSADPMNVLLKPHVLPVDPASDTDGDRTNRSITVAPSSMDYSDAKFAPMGLNAATVARVGDFLALVNMRTGASSGYGKVTSVSNLGNNYVIAYTDATQDDITHALDFYKQEAINGADLLSESDIASLEDQIKQQALASGFADQAANYLSTAALQTDSFKELIAANASTAMQKDKKSEVHILSAKPGEENAEVTLHNLKVSADIGTKLSHFEKKSGLRLNLAVSSDIQVSTGADNDILIHMSSAFTEEISLSVGVNGNTVWGYIDLGLFDLPYPKDYQASANLDALTFTSIDASAQIGTVAANTPRDRWTNIWDTAKNKVDIKAQLKAVLEQTPSSPAKVNANTLVESYQAMLENETDWVDLVEKEIFEYDQRLLLGLLHINFKGNFVISMNPNIALGIGFSYESAKRYTASFKLSEGSPSFGTVDLPGDGTYNFYFYVMGTLGLKAGIRLELAAGLFHIDLNSIGITAEGGAYLQLYGYFYYEKSSSAPTKTLGALLLEIGMYAEAEWGAQIFGGSYSYSDRFFSEYWPLYRAGTPNGHFIGFAYEQKDAPSFFAMEATVFPSILDALKLNDLNLVTGEIITGKDLLQNYTLNFDNNKFTYDPKTFRVTVSPTAADEILTSTMTVTWKGSTTGLNSLPFSRNINLTWYKRGYSAITLIPNVPISDEIQLYNFGRVVLQVNASTTKEKRLTNVPKVTGFTFKGWSLDPEGTKPYIIPALMPAGNITLYAQWTPHKNIPYLVDYITVDPNTGNRTTKKKNTFSGTAGASVSPVPIPIEGYDTPPTRTITIFGTGLSKLSYEYLPTTRKMTFYADPGGTSIVYSARSFSKLPDSALPIFTKPGYTFAGWSQAIPSTMPSSDTTYTATWKVRTDTPYLVSNRLQGVGSTSLYVEADTGSYQGTTGASAAPAIQPYPGFTYDHSTAYDSSGKALASSTIAADGSLTIVRYYTRNSYNLKFDANGGTGGSTDRVQFGAAIQAPTVTRSGCTLTGWSPALAITMPAQDVSYSAQWNCPSPPSTPVPVLSDAKSVLSNANGKVTGISLSAPSTLTVGQLLSGLTVSPNATAQVLDQALAPVTDQTSDITTSMIVRVTAQNLSTADYHILYNDVTVTSTSPSYHIELVARTITVPLYTYGMTLAITAPPNGSYKVYDQNNTEISHGYSMKSGDTLIVTAQDGTQKTYTFVVQ
>AP019400.1|BBI33849.1|3679071_3679662_-|ribosomal-protein-serine-acetyltransferase
MKPILLDIPEQFETERLLLRAPLFGDGVIINEAIRESFKTLNEWLNWADHIPEIEETEANVRKNRANFLLREGFIFYMLEKASGVFIGTCGLVRIDWNVRKFEIGYWIRNSASGHGYMTEAVNGLTEYAFNYFDANRIEILCDTKNTASRMVAERCGFHLEAILKKNFINPFGELRDDCIYAKVRLEDRMYGYPNT
>AP019400.1|BBI33860.1|3696754_3697159_-|hypothetical-protein
MSRNAAARARNETIHIVNVEKGKRIGTDPRLLEIEEKINPFGLVAHVTRKKEEQRKAGVRENLTSGLMQGELAKVKRVWNVLLQVHSLWSYDVGIYYCPIIVHNHVYRYFYLYYRVEYSKHHLIRPPLFGGIII
>AP019400.1|BBI33861.1|3697386_3697659_-|hypothetical-protein
MGNNIYKILGTIFMITSGLIYTTERIIEKLSGAIHAAGFASHGASVPRTFNYDGFFDNFFIWFFFLLGILILSYGFTKTTSKLKTEQLKK
>AP019400.1|BBI33862.1|3697854_3698421_+|hypothetical-protein
MIRKILLVSILSLILVSTSPAYANSKNTQPITIVKKVFEDVNEQKWCSIPELWTSKQRESYSLFFCKNSTSDRSDGLFNIKKASIIDWRELPSKIGINHMSNGVRQAIEDEHLESKFFYVAVDLQVKIESKYFINGTNYPLFALIKEKNNDWRIIQMSVVPTSSMIQNGYGFNTQDEKTFDERRLQYT
>AP019400.1|BBI33863.1|3698554_3699022_-|N-acetyltransferase
MNIRLEDVSPLNFEQVIKLISDKDQEQKIQIFERWVGSNAYFLGVCYTYKFKARAIYDGETIIGFACHGLNPDNQRFELVSIMLGYQYQGKGYGVPCIKLVINEMIQHYKCNEIYITVIHDNVAAIRLYEKVGFVATGEVEKAFHDEPVYKLVVS
>AP019400.1|BBI33864.1|3699086_3699767_-|ABC-transporter-ATP-binding-protein
MKIEATSFTKSIGKIKVLENINVSLESGNIYGVVGRNGSGKTMFLRMITGLILPTNGEVKVDGRVLGKDISFPDKLGILLEKPSFIGHLTGYENLKMLAKIRNVTKSEDIQYFMNIFDLDWKTKKKFNKYSLGMKQKLGIIQAIMENQQIIILDEPFNALDETSVGTLRKVLEKLRTEQKLIVMTSHNKEDIQLLCDHTITISEGKIIGVHKNLEQENDLMTAKDA
>AP019400.1|BBI33865.1|3699756_3700452_-|hypothetical-protein
MIGVFRYINPFFLLTFLGSIIVGYRYLNSTGITDPTIIYQTLFGGKPLHAILLQSLFVMMLTLLQYTLIDYIVYYIDNSEHLSVRYGNKAKWLKAFLKGALIITAAFVILFYLIGLLFYIVSSDFKVAQTINMNTVGVIARVYLFCIIAVFAQIYLLMKFTKSSAFMIMGGISILLAMTNHYQDSAFYILPRSSSPIITLLDVLVSIVLAIVLVALIQRRSLKKELSSHEN
>AP019400.1|BBI33866.1|3700448_3701087_-|hypothetical-protein
MHRFAFNCAFTIYIAISGVIFLYRIPYGNKWLDQWIFDKFFVFQFMSVITIGLAIAGSYFNNLSYIRIGNRRTILRRELLGYYTQGFICVTIMFLFIVCGALSLREINFIPHLTNWYFRYLLGIILFINVMSCLKWSSNLIVRRYCTLIVFIWMALEILMLRPYIKNFYSLDVSFLFSWVFHRGAESYYWLLGLIFITTLLNIKISDKRDFI
>AP019400.1|BBI33867.1|3701079_3701928_-|hypothetical-protein
MGDLLVSYLKIDFKRLITDKKIIIVVLVLLIIAVFDPITLARYFAKYPSSTQTIGNNPFQFWMLLNSAGWGNHLFSNAFWIVTVLFTGLIYYDDKNTSMYMYQITRGSKGAYFISKFISTGLLSFLVVLVTLEINVLMTYTLFPDTVHKTEQYGFNIPLEGSFAYDAYLVNPMNVVQMYTLLNALAISIFVVFSLCMSVLLNLKNRYIVMVIPVIILYGISYITNAYPSLVIYDIRIILQPLAASGIEGINWSAVSFVTGGWMLVDLLLIGAVFYKTRDCYA
>AP019400.1|BBI33868.1|3702311_3703079_-|hypothetical-protein
MDEGLLKQLNLWHNKSQYAKIINKITEIPEADRDYELVCHLGRALNNQENYNEAIQYFLSVQEQGEHDPLWHFRIGYAYYYLKQYKEAIVAFEQAVVLDPEDSHGNKFLEMSRNAAARAGNETNHIVNVEKGMRSGTDPRLLEIEEKINPFGLVAHNNGSISMILGVGKYKHEVFQTRAEEGFEGNGYDWGSLAAVFLEEKMPHLVDIIRFDPEADTFCIYTDNKEAILSFAIAFKEACEDDSLMKDLFSRAVLD
>AP019400.1|BBI33869.1|3703371_3703602_+|hypothetical-protein
MATHSERSVPYLERKGGLATHSERSVPYLERKGGLATHSERSVPYFGRKGGLATHSERSVPYFGSTKIKSRDLRDL

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Crispr_ID: AP019400_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_18

5213856-5214007

Orphan

Consensus_repeat	Method
CAAGTAAAACGGCTTCACCGTCCTTGGGACGGTAGTATACGTTTGTATCGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_18

>merge|AP019400|18|5213856-5214007|CRISPRCasFinder
CAAGTAAAACGGCTTCACCGTCCTTGGGACGGTAGTATACGTTTGTATCGAGCGATTAGATGAGTATAAGGAATTCAAAACTTATACTTTCTAATTGTTCAAGTAAAACGGCTTCACCGTCCTTGGGACGGTAGTATACGTTTGTATCGAGC

>AP019400|18|11|5213856-5214007|CRISPRCasFinder
CAAGTAAAACGGCTTCACCGTCCTTGGGACGGTAGTATACGTTTGTATCGAGC	GATTAGATGAGTATAAGGAATTCAAAACTTATACTTTCTAATTGTT
CAAGTAAAACGGCTTCACCGTCCTTGGGACGGTAGTATACGTTTGTATCGAGC

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI35292.1\|5223030_5224212_-\|galactokinase	unknown	unknown	gnl\|CDD\|235407
AP019400.1\|BBI35282.1\|5213113_5213821_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377796
AP019400.1\|BBI35276.1\|5205996_5206608_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223659
AP019400.1\|BBI35275.1\|5205393_5205960_-\|thioredoxin	unknown	unknown	gnl\|CDD\|379658
AP019400.1\|BBI35285.1\|5217255_5217915_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI35281.1\|5211035_5211737_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376573
AP019400.1\|BBI35283.1\|5214258_5215914_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143635
AP019400.1\|BBI35287.1\|5218736_5219255_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|115518
AP019400.1\|BBI35289.1\|5219768_5220239_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372994
AP019400.1\|BBI35280.1\|5208219_5210448_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225844
AP019400.1\|BBI35290.1\|5220429_5222025_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|235382
AP019400.1\|BBI35291.1\|5222040_5223027_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
AP019400.1\|BBI35286.1\|5217916_5218714_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
AP019400.1\|BBI35274.1\|5204753_5205380_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293792
AP019400.1\|BBI35273.1\|5203877_5204618_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212159
AP019400.1\|BBI35279.1\|5207739_5208096_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI35288.1\|5219458_5219680_+\|UPF0435-protein	unknown	unknown	gnl\|CDD\|377674
AP019400.1\|BBI35277.1\|5206814_5207276_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379208
AP019400.1\|BBI35284.1\|5216092_5217256_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379330
AP019400.1\|BBI35278.1\|5207329_5207641_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI35292.1\|5223030_5224212_-\|galactokinase	gnl\|CDD\|235407	PRK05322, PRK05322, galactokinase; Provisional.	0
AP019400.1\|BBI35282.1\|5213113_5213821_-\|hypothetical-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	0.000209942
AP019400.1\|BBI35276.1\|5205996_5206608_-\|membrane-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.66e-43
AP019400.1\|BBI35275.1\|5205393_5205960_-\|thioredoxin	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	1.85197e-45
AP019400.1\|BBI35281.1\|5211035_5211737_-\|hypothetical-protein	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	4.46634e-14
AP019400.1\|BBI35283.1\|5214258_5215914_-\|hypothetical-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.25926e-59
AP019400.1\|BBI35287.1\|5218736_5219255_-\|hypothetical-protein	gnl\|CDD\|115518	pfam06866, DUF1256, Protein of unknown function (DUF1256). This family consists of several uncharacterized bacterial proteins which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown. These proteins are related to peptidase family M63 and so may be peptidases.	3.97045e-43
AP019400.1\|BBI35289.1\|5219768_5220239_-\|hypothetical-protein	gnl\|CDD\|372994	pfam14275, DUF4362, Domain of unknown function (DUF4362). This family of proteins is found in bacteria. Proteins in this family are typically between 93 and 146 amino acids in length. There is a conserved IRIV sequence motif.	4.06987e-26
AP019400.1\|BBI35280.1\|5208219_5210448_-\|hypothetical-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	3.92083e-07
AP019400.1\|BBI35291.1\|5222040_5223027_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	0
AP019400.1\|BBI35286.1\|5217916_5218714_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.21969e-39
AP019400.1\|BBI35274.1\|5204753_5205380_-\|hypothetical-protein	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	9.20299e-74
AP019400.1\|BBI35273.1\|5203877_5204618_-\|hypothetical-protein	gnl\|CDD\|212159	cd11614, SAF_CpaB_FlgA_like, SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB. FlgA is a putative periplasmic chaperone that assists in the formation of the flagellar P ring; CpaB is a protein invoved in the assembly of the flp pili, which are bacterial virulence factors mediating non-specific adherence to surfaces; these proteins appear to contain a single SAF domain. This intermediate family also contains the SAF domains of sialic acid synthetases and type III antifreeze proteins, which also share the same extensive core structure.	1.38163e-11
AP019400.1\|BBI35290.1\|5220429_5222025_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|235382	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
AP019400.1\|BBI35288.1\|5219458_5219680_+\|UPF0435-protein	gnl\|CDD\|377674	pfam06569, DUF1128, Protein of unknown function (DUF1128). This family consists of several short, hypothetical bacterial proteins of unknown function.	1.21376e-31
AP019400.1\|BBI35277.1\|5206814_5207276_+\|hypothetical-protein	gnl\|CDD\|379208	pfam13473, Cupredoxin_1, Cupredoxin-like domain. The cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel.	1.18695e-09
AP019400.1\|BBI35284.1\|5216092_5217256_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379330	pfam13679, Methyltransf_32, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.4861e-49

>AP019400.1|BBI35282.1|5213113_5213821_-|hypothetical-protein
MTYDDDNNAAGSELDKDLLPLNILLHCRTVVEGKSFLTTGVMTHVEGELFEVEVHEYEQFELGETVKLTIYSPAGIQSMSSVVFAKYEGAIALLQPPDLSKRFKERREHPRVEIAGNAHIVQVLKDSGEVLPLNQTAELIIQDISISGISFSGKYEPHFAAKSKLRANVHIGIGFSCELEIIRSDRQEDGVLCGAKMHVLEPEMLRPLRALILRQQVEKHAKTRRDLGKKRIFNG
>AP019400.1|BBI35281.1|5211035_5211737_-|hypothetical-protein
MGELVSADKEVLNIFDRGYVDYKKFDTYCNNGVRFVTRLRQSACMKVLEERAVASDANVGDATVLLGSDVSAYKMKNPLRLITCFDEKGEQVLICTNDFELSVEEIADIYRNRWQIEIFFKWIKQHLHVKHFYGTSRNAVYNQIYAALIAYCLVLLTRDELHYRGTLWELTKSIRMCWHENLVHFVKLLFRPPKQKSGGRQKSKAERLFKETQLQYESGECDHLDDLTYDPIS
>AP019400.1|BBI35280.1|5208219_5210448_-|hypothetical-protein
MFKAQMYRKAMIILFTLGVAAALEWSGYRYGMFFNEDFYWMEAIIYMGLIGWVVLLAATKRIDSIPLAALLPLGMSVLYMLELWLGPASTKGTIDSMLRWLTYGSWSILLWGLWRSDLGRAWGRWAIQSTGVLLLAGGWAGWYGWTTFPQIVLRFNDAELSATGARLAGFMQYPNAYGAVLAAFLLMQLQSWTDNSKPRAYSWLASITVIPYGAALFLTESRGAIVALLFGILLAYFLHKPYERRRFRNIFGITAVGSAIMAKFSWNWMQGMDGSLDGVGRGVVGSVHFWIALFSAIVGAIILIRLRKDRLSRKSGINEEIGEFRKVVEVRTVMDSPIGAKLSWLSAGVGVAAISWLAFGSAGSRIAEHYGTVTSRRLFYEDAWRMFKDSPIFGYGGESWRMLFGLYQSQPYVGNEVHSGYFEMMLDLGIVGVGMLLLLLGVYVIKMWKQEKNAIAPAAVLVVHAAVDFDWSYSFVWLLLIAWFTIHSVPRAGEGSSKASPASGGGWRPIGRIALALLLLCSAGAGLWTASRLDAAVSARAAAVSAAAPAAREAKLRAALDANPAWTRIRMELAMLLPLQERASLLEAGLRYEPQAPPLFLQLGITYAELGHVAQARDRLREALRLERFSRDGQTTAIVSMANLAKSLHDDGDEVQAGEAAEATVSMFERYRALDREVTEMKNVANDKKFGMTMAAKLRTAECLLLLSRDEDAGVLLLEIMTEGDEDWQEQAYKLLQDNKLL
>AP019400.1|BBI35279.1|5207739_5208096_-|hypothetical-protein
MAVQRPRPKQGDSKGSRIIRRKIAGTRNINNNPTFNRLTVVWVQRNGVPFDTTGFFARLSRGNTLVSTASFDRFGVVVFNNIRTLTNVSYTLRVFSNNGVLFRTRTIPAGVETFAIIG
>AP019400.1|BBI35278.1|5207329_5207641_+|hypothetical-protein
MKMFQEKHSSQLPNPRSIRRACGKELYRTVKRLKQHIPAALVEQAEQLYVKRVFGNLIWITENRSNRKVLADWWDEEISEEIALLWNVDRTKLMQAFRDAFGG
>AP019400.1|BBI35277.1|5206814_5207276_+|hypothetical-protein
MSKIVILSRKKIQFYSIIAAVVILAGAYIGWQQSKPAGTPVKNVSGEGTQVLQLVTGKFTAVADNGKNLEAYLFYPGTVVANKGQPVELRITGINGQSHRFEIEGLNISGEVHKGKTTIIRFTPKEAGVYSIVCQTHGDSKSGGPMVGYIVVQ
>AP019400.1|BBI35276.1|5205996_5206608_-|membrane-protein
MMDTLHDWLAQILVWIESLGYWGIIIGLGIEVIPSEIVLGYAGYLVSKGDISFLVAVICGVIGAILQQWILYAIGRYGGRPFLDKFGKYLHLKSKHIDLAEKWFDKYGTIIVFTGRFVPVMRQVVSIPAGMARMNLWRFTWLTVVASIPWSILFVWLGRSLGDKWETINEKAAPYVQPIILVAIALLVAFFLIQYLRKRGKSI
>AP019400.1|BBI35275.1|5205393_5205960_-|thioredoxin
MSQNLASKLNQGLSPRQFVESMTKNEDTFTSWYEKFEWNDSELEEFYESLNNRDDLRCLILAADWCGDVVRNVPVVFQAMDKAGIPTEVLIMEQHLDLMDQHLTMGGRAIPVVLFTDTGGHLLGKWGARPKHVQEVMTAFKLANPDREAADYQDNITVARQEMGRRYGEDTGYQTIILQEIRDILSGV
>AP019400.1|BBI35274.1|5204753_5205380_-|hypothetical-protein
MLTFQRFSLGALQTNAYVVVNSERTNAIVIDPGTADSGLMRKLDGLKVEAILLTHAHFDHIGGVDAVRKRYGCPVYIHSAEQSWLTDAGKNGSNRWADVTPPITTDLPEHLLTDGQTLELIGETFHVKHTPGHSPGSVSFLVGDLLFAGDALFHRSIGRTDLPGGNQDQLSRSIREKLYVLPEDVLVLPGHGQETTIGEEKRENPYVR
>AP019400.1|BBI35273.1|5203877_5204618_-|hypothetical-protein
MRFFISQKRGEEMNRRRQAAISLSAAVISGMLVYGVYLLQLRQIQLQETVEIVVPKQFIPIGTKLSAEHLRIITLPLTALSPEMITDMKDAIGMETSVPLGGNEPLLRWKVDKYPLLPRNGQSTFQIPREYVKSVSNGIRAGDEVSLYLSNEAEPSRKLYPESIRVAGVKTAANLEIDNPKNPNLMSMANDDKEGMYASRRDANGTIDSINLNLTEDQWLALDSACKGGTTKLIIAFQASSIKGSE
>AP019400.1|BBI35283.1|5214258_5215914_-|hypothetical-protein
MGFQWTDFTLFVLLFMLFVSVIAFNRITQTHKVYLAFHFVMMLWPLGQFAVKMTDYTQFQLFFINTSFVAMGLLGPGWLIFVFFLTGRAAQLKASRTLLYLLPAALCIIGALWNPNGLFMSPVAGNYLERVYGPLFWLLVLVQFAYFFTALMSMFHALKTVSSVNQRKQLGTALIGMFVLTGFGLLDVLINVLLSQWLPIVPGLLASGILLSDLCFVIAIYRFGMFDILSMAQRDIFEHMTTGIIVVDENDKVLEVNRGASPFVQSAKGEIFEMDRFLAPLQAQGEVYEFLYRYLHHPYEKMQMEFSLPENGGRHVSIQISPVVDDRKTLLGRIITFHDVTELRKLVVEMNRKNEALHERNLELITIQEELFRVNQKLEQMAVTDGLTGCFNRRYLMQQLEHEVLLNMRYQIPFAIVLFDIDHFKQINDKYGHLVGDEVLRSTADIVRTKLRRTDILARYGGEEFTIYLPHTNREQAELLAERIMIAVGDNWVDAGTEKVHVTISMGVLSETSEDLSFDDPKEYMREVFSSADSALYKAKNEGRNRVVMAL
>AP019400.1|BBI35284.1|5216092_5217256_-|SAM-dependent-methyltransferase
MNGKVQPEEWVHFIERIVAEEQLIQASFSAPRRKEEDTPVKLTVRPIKLKNGLFYQFERHQSNKVFHENITPEQVGEQLQSVMEQYKQALFKITDADVQVLANKKGKLSLITHSKVSKRENIPQEHNRNKTYVLPEGEPVPFLFALGVMNAEGRVIKAKYDKFRQINRFLEMVSDVIPDLPRDKPLTIVDFGCGKSYLTFALYHLLAIKEKLPVRIIGLDLKQDVIETCSKLARELEWDNLTFSVGDISNFEGYTSVDMVVTLHACDTATDAALLKAIGWEASVILSVPCCQHELFRQISQPILKPLLKHGILKERFSALVTDAIRANLLELAGYRTQLLEFIDMEHTPKNILIRAVKARKTDLEEVKQEYVKFRDFLGVSPFMEKQ
>AP019400.1|BBI35285.1|5217255_5217915_-|hypothetical-protein
MFERDYLVRLLTQAGLVIAKAIGLREQKKQKEALDIIDEFLGKELRLRSRLAMGLSDEDLLSMLTVTGAPNAESVAVVAALLQQEADLLADLGQEDQSVPRYAKALRLNIYLIRNNMEVEDWKVRERIVELIEALSSYEIDSDTKLALWQWYETNGELAQAEDLLYELQDQGDVTAETGDAFYERLSAYDDSELEAGGLSRNEMVEGRRQWSALMKENA
>AP019400.1|BBI35286.1|5217916_5218714_-|alpha/beta-hydrolase
MKKVTLSSGTTIAYEEAGNGQPIVLLHGFCGSHQYWDEVLPLLSSHGHIIAPDLRGHGASSATEGVYSMELLADELVDLLDELDLPMVNLFGHSLGGYVALAFAEKYPERLLTLGLVHSTSFPDSEAAQANRLKAVEAIKQDGINTFVEGLIPKLFVPNSSESRQELLRKAIEIGYSTSPLGAIGCSLGMRERPDRGAVLEQLQAPILLLAGERDEVIPPEKRFPVAKINVTAVTIEGVAHMGMLENPQEFAAAVGTFLERNRGE
>AP019400.1|BBI35287.1|5218736_5219255_-|hypothetical-protein
MIDHKSQDVERADAEGLRKFMSQIGVVHSKEELTFVCIGTDRSTGDSLGPWVGTMLMEQGFTKVIGTLQHPCDADKLRQLIPSLTEMGTIVAIDACLGRSDNVGAYLVSNGPLVPAQSVNKRFPAIGSYSIAGVVNAVSLKPYWTLQSTSLYQVMGMARQIADAITLQWGNK
>AP019400.1|BBI35288.1|5219458_5219680_+|UPF0435-protein
MDLSQPTQENVEYMIEAIKTKLRMATGAAMQASSFTSEKYEDLKDIYDMVSSKDRFSISEVEALVSELGKLRS
>AP019400.1|BBI35289.1|5219768_5220239_-|hypothetical-protein
MKKLIFIIVSISLFGSVLGCSNNNGKSIVTSKPYSSNEAISKGDVVYLHQSYANIDKFDRFITNLENKKADSIRITGYTDEGDPIYKDLNFDGKEISYTYDNSNDKFGGSNKGIQTDTCSKVSSEENEQGEIDYTISECTKNASEVSYFLLRMKKE
>AP019400.1|BBI35290.1|5220429_5222025_-|galactose-1-phosphate-uridylyltransferase
MKTAATIPSASSEDMLGLAIERLVAFAFHNGLIESIDIDASRNSLLDLFQLKEPAEGFGIIDESYLPTSPVPLLEPLLASAAALGLMADDTLTFRDLFDARIMGLLIPRASEVVRQFQQLSKQSGIVKATDWFYKLNIDANYIRMDRIQKNGYWKHRTVDGDLEITINLSKPEKDPREIALLKTLPQSNYPKCLLCKENVGYAGRPDHPARQNLRILPLTLQNESWFFQYSPYVYYNEHSIVFCGEHIPMVISPVTFSRLLDFVEQFPHYFIGSNADLPIVGGSILNHDHFQAGRHVFPMESAGVIGWTNSSQEPEVTIGIVQWPMSVLRLRSSNRQALLNVASDILAKWRQYSDSSVDIIAFSENEGGRVEHNTITPIARLKDNGVYELDLVLRNNRTSEEHPDGIFHPHQELHHIKKENIGLIEVMGLAVLPGRLQAELGLIADILTGRTPYDEAAIAAPDHPLSKHADWVWTLVDRYGTDGSDAAVQLLLQADVGDKFHAVLQHAGVYKGDESGRKAFEHFLTSSDIV
>AP019400.1|BBI35291.1|5222040_5223027_-|UDP-glucose-4-epimerase-GalE
MAVLVTGGAGYIGSHAVAALLEKGEQVVIVDNLYQGHRDAVLGGKLYEGDLRDAEFLAKVFQENEIDGVIHFAANSLVGESMKDPGKYYHNNVYGTLCLLEQMQKAGVARIVFSSTAATYGEPERVPIDEYDRTVPTNAYGETKLAMEKMIRWFDVAHGIKFVSLRYFNAAGAHESGKIGEDHNPESHLVPLVLQVALGQREHISVFGEDYPTEDGTCIRDYIHVSDLADAHILALERLRQGEESAIYNLGSGNGYSVKQVIDVSRQVTGHPIPAKIEPRRAGDPAVLIASSERARTELGWAPRREKLEDIVTSSWNWHRTHPNGYEK
>AP019400.1|BBI35292.1|5223030_5224212_-|galactokinase
MAQLTELKQKFVQQFGGNESSISVFQAPGRVNLIGEHTDYNGGSVFPAALTFGTTLLIAPREDRNLGFASTNFPLTKEVSLDNLTFIEEDDWANYPKGVVWELTQRDIYLSHGYNLLFHGEIPNGAGLSSSASIEVVTAYALLSLEGKPTDTVQIALWSQHAENEFIGVKCGIMDQFAVANGRKDHAILLDCDTLKYELVPFQSGDYKLVIGNTNKRRGLVDSKYNERRGQCEQAVQDLRQAFPEITLLGQLSLAKYEANEHLIKDETVRRRARHVIEEINRVERSMEVLNNNDLAAFGQLMNASHDSLRDLYEVTGVELDTMVDAARLVPGVLGSRMTGAGFGGCTVSLVHQDSVDQFLADVGSSYEAATGLKPDFYVCNIGDGVREIKGGE

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Crispr_ID: AP019400_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_20

5492168-5492244

Orphan

Consensus_repeat	Method
TGAGTTTGTCGGTCTCTCCTCTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of AP019400_20

>merge|AP019400|20|5492168-5492244|CRISPRCasFinder
TGAGTTTGTCGGTCTCTCCTCTTATTTCTCTTCATTTCTGCGCGGCTTCTCATGAGTTAGTCGGTCTCTCCTCTTAT

>AP019400|20|13|5492168-5492244|CRISPRCasFinder
TGAGTTTGTCGGTCTCTCCTCTTAT	TTCTCTTCATTTCTGCGCGGCTTCTCA
TGAGTTAGTCGGTCTCTCCTCTTAT

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI35506.1\|5481824_5482250_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238374
AP019400.1\|BBI35507.1\|5482262_5483855_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
AP019400.1\|BBI35524.1\|5501813_5503130_-\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|214829
AP019400.1\|BBI35513.1\|5490346_5490532_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI35523.1\|5499709_5500786_-\|ferrichrome-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223687
AP019400.1\|BBI35522.1\|5498888_5499629_+\|putative-N-acetyltransferase-YobR	unknown	unknown	gnl\|CDD\|366181
AP019400.1\|BBI35516.1\|5492507_5493665_-\|FMNH2-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|173852
AP019400.1\|BBI35509.1\|5484760_5485702_+\|tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234698
AP019400.1\|BBI35512.1\|5488146_5490108_-\|FmtA-like-protein	unknown	unknown	gnl\|CDD\|224594
AP019400.1\|BBI35511.1\|5487416_5488091_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
AP019400.1\|BBI35519.1\|5496181_5496832_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224639
AP019400.1\|BBI35508.1\|5483866_5484457_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225116
AP019400.1\|BBI35514.1\|5490826_5491666_-\|integrase	unknown	unknown	gnl\|CDD\|222853
AP019400.1\|BBI35521.1\|5498174_5498708_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223537
AP019400.1\|BBI35518.1\|5495054_5496020_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224639
AP019400.1\|BBI35515.1\|5491773_5492094_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI35517.1\|5493716_5494898_-\|alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|274652
AP019400.1\|BBI35520.1\|5496843_5497605_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|212491
AP019400.1\|BBI35510.1\|5486067_5487420_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
AP019400.1\|BBI35525.1\|5503201_5504026_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI35506.1\|5481824_5482250_-\|hypothetical-protein	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	1.89192e-32
AP019400.1\|BBI35507.1\|5482262_5483855_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.33894e-65
AP019400.1\|BBI35524.1\|5501813_5503130_-\|alpha-L-fucosidase	gnl\|CDD\|214829	smart00812, Alpha_L_fucos, Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.	2.977e-117
AP019400.1\|BBI35523.1\|5499709_5500786_-\|ferrichrome-ABC-transporter-substrate-binding-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.43271e-44
AP019400.1\|BBI35522.1\|5498888_5499629_+\|putative-N-acetyltransferase-YobR	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.76399e-11
AP019400.1\|BBI35511.1\|5487416_5488091_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.01572e-78
AP019400.1\|BBI35509.1\|5484760_5485702_+\|tyrosine-recombinase-XerD	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.38085e-43
AP019400.1\|BBI35512.1\|5488146_5490108_-\|FmtA-like-protein	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	5.52228e-57
AP019400.1\|BBI35519.1\|5496181_5496832_+\|hypothetical-protein	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	2.01611e-17
AP019400.1\|BBI35508.1\|5483866_5484457_-\|hypothetical-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.8614e-53
AP019400.1\|BBI35514.1\|5490826_5491666_-\|integrase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.85524e-23
AP019400.1\|BBI35521.1\|5498174_5498708_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|223537	COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide transport and metabolism].	7.5591e-49
AP019400.1\|BBI35518.1\|5495054_5496020_-\|hypothetical-protein	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	3.57474e-17
AP019400.1\|BBI35517.1\|5493716_5494898_-\|alkanesulfonate-monooxygenase	gnl\|CDD\|274652	TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes. [Central intermediary metabolism, Sulfur metabolism].	4.76611e-117
AP019400.1\|BBI35516.1\|5492507_5493665_-\|FMNH2-dependent-monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	7.40182e-124
AP019400.1\|BBI35520.1\|5496843_5497605_+\|oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.23357e-82
AP019400.1\|BBI35510.1\|5486067_5487420_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	3.24512e-72
AP019400.1\|BBI35525.1\|5503201_5504026_-\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.05262e-61

>AP019400.1|BBI35515.1|5491773_5492094_-|hypothetical-protein
MRRRNRTFEAIRHQAAREALSGIKPAIVARKYEVTSETIRSWVKEFQETHGDDSIPTFSERAADEQRYLELEEKHARAMKVLGEKELELEILRELIKKKNPLSMTN
>AP019400.1|BBI35514.1|5490826_5491666_-|integrase
MEVVASSPPARGRPLSTHTLLQNGDKVSNSQVQEWLTELISGEEYIYGYRMLAECLRVQYQALINDKKVYRFCKELGILKPQRRKIVHYPRRLARNHTITASNQLWQLDIKYGYVEGYDQFFYLADMIDVYDRTIVGYHLGSSCSAIHICQTVKAAFKARLSQGEARPIIRTDNGPQFISKAFGALSADENEPFIHERIPPKSPNMNAYIESFHATLERDVLDKTSFETFEAAYQAVRDYIEFYNARRMHGSLGKRSPAAFMNWLKGTKEDLKKFDRVL
>AP019400.1|BBI35513.1|5490346_5490532_+|hypothetical-protein
MRGLTGYLVAWDADLVGLSSYICATARELVSLFSYLSPFLRRGSGLVGLSSYFSPYLRRFS
>AP019400.1|BBI35512.1|5488146_5490108_-|FmtA-like-protein
MSSSMRKISCKMMLLVLLIVSMGAGLFAAQAPVSAALPDSTTVQHEGKPDLTDTVGLTAFIDGIMKGHIDNFKIPGAVVTIVKGDKILLAKGYGHSDIEAGKLVDPETSLFRIASTTKLFTWTAVMQLVEQGKIDLDTDINTYLKTVKIPKTYSDPITMRHLMTHTAGFEEGGVGYQITTDPKKLPVSISETLAKHMPARVRPAGEMASYSNYGASLAGLIVEEVSGIPYDDYIQKNIFDPLGMKYASVQEPIPASLEPYTIHGYARENGVFVRKPPTFEGGFRPAGSGSVSALDMSRFMIAHLQDGRYGDKQILKPETVQLMHAPAFVFIKGLPAMDLGFYEQRMNGLRIIAHGGADTLFSTELYLVPEKQIGIFVSYSGGEGGVAADGLARAFFDRYFPAPEIKLPPMSIETDKSLLKYAGAYQFTRRNHSDIDKFFSFLVKMNVEVSGNRLSMGSGAEQQVYAQVGPDLFQEVGSSHQIGFRTDESGKVTHMFLDFLTAIPLERPPLLDKTTFWYPLLGFSLVMFITVLTGFAYRRREIKAMPKAQKWAVRLSVVTAAWALATVAATFFVVLNMDLLDRLSRITQSLNLYLFMPIILVLLTLGMLTFSVLAWKDKYWTVLKRVHFTLVTLSAVVLCVFFYYWNLLGWHFG
>AP019400.1|BBI35511.1|5487416_5488091_-|DNA-binding-response-regulator
MARILIADDDVHIRELITLFLRNEGFELLEAKDGAEALTIVENTQIDLVILDIMMPHLDGWELCKEIRRIDSNIPLLMVTVKGESAQKVKGFQLGADDYLTKPFDPLELVMRVKALLKRYMIVSSQTIQLNGIVLNRRNFQVVRGDETLNLPLKEFELLFKLANHPGQIFTREQLITHIWGMNYEGDDRTVDVHIKRLRERFAGDSQHFQIETARSLGYRLVIT
>AP019400.1|BBI35510.1|5486067_5487420_-|two-component-sensor-histidine-kinase
MIKTLYVRIIITFLAVIMFSLLSSFFIGVFVFQKKINHLGQNDLIAVGEEIVSLYEQTKPGDRDAFIKHMVKVSSHPIHIYDSTGRVTFYGLENTTNINIAPEVVQEVQRGHYYRSPDSAEQMFVGLPFLFEDEHHAMFMQFSPQNENITNRLMLLILLLGLLIGSLCILVAARYLVKPLQALTKATKQLAKGDFDIEIKTKRADEMGALTQSFNEMASELKQLEQMRQDFVSNVSHEIQTPLTSISGFAVAMKNSNLVAERDRNYYLDIIISESGRLSRLSDNLLKLASLDSEHHPFEAITYNLDEQIREIIVTCEPQWSAKGIHIDLELDEAVKITADRDQLNQVWMNLFGNSIKFTPAGGHIEIHISHSANEIMFSITDSGIGIAQEQLEYVFERFYKTDPSRNRSNGGNGLGLAIAKKIVTLHRGSIEMKSQVGKGTTVIVRLPIR
>AP019400.1|BBI35509.1|5484760_5485702_+|tyrosine-recombinase-XerD
MPSQTQQTNFPIRVVSQQAYSDDQIVNMFFATYQRSKYTVRNYLSAINKFRDFIGTKTLNDVTWKEIEVYKIGLVDGLLAKDDKPKAPATVAIHIAPLRSLYRWGSDSNIGIFDNNPMTAVRTPKITVTSKNNYLTKREVVLLIEQLKTQGIREYLIGMTLILLGLRVSELIAIESGHFHTDPEESSIWLTVHGKGGKDREVKVPQMLWQLINEHFSNELLSANRRIFPISVRLVEKIIKKAREQCGLQKKATPHWLRHTNATLALLRGASLQQVQESLGHTHINTTQRYLHTVQQIQKAAPDFVEDSLKGSI
>AP019400.1|BBI35508.1|5483866_5484457_-|hypothetical-protein
MKDEWYLELLLQLLKKDATTYEHSLRVGKLCEIMAGHLNLDEKEAKHLIHGGYLHDIGKIHIPEDILKKDSTLTKEEWKMMQTHALLGSEMMCKYVSIDQEILEVIQFHHERWNGKGYPCGLSQNEIPKLARICGILDSFDSMVSIRPYCQSKTFAEAKEELVLCSGTQFDKEYVDIFIRWSASFEEVYLPQKIHK
>AP019400.1|BBI35507.1|5482262_5483855_-|methyl-accepting-chemotaxis-protein
MKWFYNLKTSVKLVASFFVVSMVLVVVGLYGLNNMSKVNDGLTNMYIDNLLPMNQLSETQILYQRLRINFREISDSDNNTERDQYAEKVKELRGSIQSKLTDYRKNTKLAENEMDVLKAVENAWNNYQKAADEAIQNIYAGKKEEFRASFKKGDIRTIGDELNNSLQQIIDINMKNAAKASEDADSLYRSSRTVTLSIIILSLLLSIGFGYYIAQIIARPLNRIVGLVARVAEGDLTQTSDIQTKDEVGRLGQSMNTMVLNLRKIIGSVLSSAENVSASAQQISASTEEIASGSTNQAQIAVTMNELFKELSMAISSVAQNAEQASELANETMQTAQDGGLVVETSIEGMSQVNEQMAQLEQDSEKIGEIIEVIDDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRKLAERSSEATKLITTIIKGMQQNTRLSAKSVNEGVVSSRKTGEAFKNIVSMIHETATKAAEIAAASEEQAAQTSEFLVSIESISAATEQSAASSEETAMTAQSLAQLSEELNNNVVIFKI
>AP019400.1|BBI35506.1|5481824_5482250_-|hypothetical-protein
MGAVKHEQYIEIGIEQERYAVRINEIQEVIRWQDPTRLPGNNSYIKGVINLRGKIVPIMSLSLFLGIAEGPCTKSTRIVIFNFDDERVGMIVDRVIQVVTLTDIQPHVESGSRGKSSWIAGYGHTATGLVCILKSQRIFWE
>AP019400.1|BBI35516.1|5492507_5493665_-|FMNH2-dependent-monooxygenase
MEIATELAQEFAKNAAQRDRDGGTPKHERDLIRQSGLLKLTISEQYGGYGQPWSVALAVTRELAKADGSVAHLFGYHHAVLANFQRLGTPEQVAFYLEGTVNKNWFWGNTSNVRKGVSRVVGNRVDNHIVLNGSKKFTTGTPDADYVLISWEDEKSANTVIGVIPGGREGLKIHDDWDGIGQRQTGSGTVTFENVIVELSEVLEEHPNEIKDSYNPPLTQAVLTNIYLGNALGALDEAKRYIVTEARPYALSDADTAAEDPYIILKYGELWAELKSAESLVDLASKHVDLADSNRYALSAQERGEAAAIVTAANVIAGRTALDVTSRIFELMGTRSATVRNGFDRYWRNVRIHTLHNSVDYKLKNIGNWALNGKQPPTPIGGLHT
>AP019400.1|BBI35517.1|5493716_5494898_-|alkanesulfonate-monooxygenase
MTVERNEVEFGWYIPTYGDGNHVGVRPERETDLSYIIQLAQHAEKAGFTFALIPTGGTCLDAWVVGSAIISSTTTFRPLIAMRPGLVSPVLAARMAASFDYLSQGRLLINVVTGSSAKDLRMMGDPLADSHDERYERTREFLQIVKGLWANSSVNNENDFFAVNEPYQDIEPLQFTGNHYNLEAVASYPATQQRPHPPLYFGGSSASGKRVAAELADVYLMWAEPLNWIQEQIGEMEALRNEQQEATGIRRPLKYGLRVQILVRQTEEEAWRDAWEIISKVNNVAIEQAEERFTKSDAVNQIRQNKLRTYSKENQYLLGPNLWSGLSTVRSGGSLMLVGTPDQVSDRIIEYIRIGVSSFILSGFPHLEEADIAGELLLPLIKEKLKQEQYTTL
>AP019400.1|BBI35518.1|5495054_5496020_-|hypothetical-protein
MMNYGLVVNPEVPLPIHVQVMEQIKWFIVLGFMKPGEVLIPAAQLADLLQVNRNTVQAVYAQLREEGILDTRKGYGTWVADSEQTHKLIEERKPLGQFMEQTFEEALKSGLDRSRFVNLSAASVQLQLKYNTEQFMFIVSKEEEYRFLHEEIVRLTGREAEPLFVEGLADMENSSQSSQSSGDVMVTTLSCVEEVRRLYPNAADSIIIVEPVIDQFTFFEIAHTIKTSRTGFVSGGKRGVDWINSQIAASSADYISLTINEQDKIVEMLGVVEQVYAAPSVYDSVRRLAPDKVKRLNLQLEKSSEFQLKSFSGDRYNYLTS
>AP019400.1|BBI35519.1|5496181_5496832_+|hypothetical-protein
MNSISKLPLNITPLSPIPINVQLKEQLLCLIGSGAIKPGDFLPSANELADQVSLNRNTINAIYNQLAKEGVVVVKKGSGTQVLDTGRIANDRETLSFIDSKMKEAVQLQINLQELPVAYLIFEQIYEAVSEKSKHLLFVSFRTDDFATYSDEIKSVKTSSITQITFHQLKQLERPALEQLLHDIDIVVTPYSGLKEIHNLELPASKRIIAVGDIPY
>AP019400.1|BBI35520.1|5496843_5497605_+|oxidoreductase
MKFDGMNVIVTGSTSGIGREIAYRFALEGANVAIIGRNFHKGVEASEHIVSLGRKSLFVPTELTDEQSVQAMTEQVLQHLGHIDIIVNNAGYLVSGAVTDISLEDWTNTWQSNVTSVYLTSHAILPHMLVRGSGTIINIASETALKGYKNRAAYSAAKAAVIALTKSMAVDHAESGIRVNCLCPGTVETEMFNNLLRYNLDPDKHKKFMLDRRLTSYLGTVEQIANAILFLADPNMKYMVGTVLTLDGGSSVK
>AP019400.1|BBI35521.1|5498174_5498708_-|orotate-phosphoribosyltransferase
MNKKELAREIFNTSHLTGVFKLRSGKESDKYFDKYLFESNPKLLAEVADKLAPLIPLDTEILAGLEMGGIPIATALSLKTGIPVVFVRKKAKEYGTCKLAEGKDIDGKKVCIIEDVVTTGGQILLSAEDLKKYGAKVKDVVCVIEREEAGRNNLESADLVFHSLFTMEELLSAVSEA
>AP019400.1|BBI35522.1|5498888_5499629_+|putative-N-acetyltransferase-YobR
MDNKFIEELSLNNWQPLSTLLYDGWVLRFANGYTKRANSINSIHYSTYDLNLKIKQCEKIYSNNNLPTTYKITPFVHPENLDEILEENGYSLIDSTSVQTLELENINEPKLKSIQIVENSNAEWLDNFFRLNNVEANSKDTMERILSNIKTKKGFISLYYEGQVVACGLGIIEREYIGLYDIVTDINYRNKGFGEQIILNLLHWGKVNGAKHSYLAVVLNNKPALRLYSKIGYSEIYKYWYRVKKS
>AP019400.1|BBI35523.1|5499709_5500786_-|ferrichrome-ABC-transporter-substrate-binding-protein
MYQSERAAHVSRRAKQGQRKLQGVALLLILFVFTVFVSACGNNTNTNTGANTVETQKPEQTSSAQPTAQSEEPQMITVKDAYGEKQVPLHPKRVAVIGLEDIALTLEAPLVYAYDFDGYYLHDQLQALHIQVSGSSDVNPNLEAILASKPDIIILQQYFTDQGGYDQLNKIAPTVAYPPDDWKSSIIEIGKILGIEEKAQSVIQTYDDKIKQAKETIEAEVPGKTVAFIRPSDKDLQVFFPSFNSLVYDQLGLKPDTSIATFQKQSPEDWGITTSLESLPLITADYVFAIYGGSISSAEDYLLENAASTEVEKLKVWKAIPAVKQNHVFKVSSRHWMSSGPIANSRVIEDVVSSVTGK
>AP019400.1|BBI35524.1|5501813_5503130_-|alpha-L-fucosidase
MEKSYIEQRTERTEWFLEDRFGMFIHWGLYAIPARGEWVRSDEQISVEDYQVYFDEFNPQRYDPRAWAKAAKAAGMKYAVLTAKHHDGFCLFDSKLTDYKATNTKAGRDLVSEFLEAFREEGLKVGIYYSIIDWHHPDYPAYGDQYHPMRNNEAYKRDPSRFDVYLDYMHGQVRELLTNYGKLDIMWFDFSYGDMIREKWRAAELMEMIRSIQPHIIVDNRLEASGEGGGSIYTKNPSFYAGDFASPEQIIPPTGVTDEDGVSIPWEACITLNNNWGYGATDFRYKTAKTVIRRLVECVSKNGNLLLNVGPDAQGEIPDESLKILEEVGQWIRRNGDSIYGSGQADFPKPEWGRYTQKGNKLYAHIFEEPVGPINLAGLAGRIKKARMLADGSEVFVSRPWNTVMFPDNAFFNFARPEQLTYPLADERDTVVELTLID
>AP019400.1|BBI35525.1|5503201_5504026_-|sugar-ABC-transporter-permease
MMALRKNYKLWLLEAGLLIMSLVIIVPLLIMIFGSLKSPAEAAQFSIKPPSEWHWDNYSFVIQSGGIIRSFGNSTIITVFSLLLTVVVSSAAAFIISRRRSKRSEGMYIFFLIGMIAPMQIITTYAVLKILHLTGSFTGVILINAAMNIPLSIVMFSGFVKGIPREIDEAAAIDGCGTYRLFGIIILPLLKPVISSNIIFLSLGIWNDIMLPIYFLNGEKWTLPLSVYQFFGQYFSSWNYVFADIVISAVPVVVLFLVAQKYIVSGMMSGALKG

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Crispr_ID: AP019400_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_21

5847374-5847830

Orphan

Consensus_repeat	Method
GTGCCTCTNCCAAGNCCCGTTGCTCGAAA	CRT

8 spacers

csa3

The CRISPR arrays of AP019400_21

>merge|AP019400|21|5847374-5847830|CRT
GTGCCTCTCCCGAGACCCGTTGCTCGAAACTATCGTACATATGCCTCACATTGTGCCTCTTCCAAGACCCGTTGCTCGAAATTATCGTACATCTGCCTCTAATCGTGCCTCTCCCAAGACCCGTTGCTCGAAAATATCGGACATCTACCTCTGATTGCGTCTCTCACAGTGCCTCTCCCGAGACCCGTTGCTCGAAACTATCGTACATCTGCCTCACATCGTGCCTCTCACAAGACCCGTTGTTCGAAATTATCGTACATCTGCCTCACATCGTGCCTCTTCCAAGCCCTGTTGCTCGAAATTATCGTACATCTGCTTCTGATCGTGCCTCTTCCAAGCCCTGTTGTTCGAAATTATCGTACATCTAACTCTAATCGTGCCTCCTCCAAGACCCGTTGCTCGAAATAATCGTACATCTAACTCTAATCGTGTCTCATCCAGGGCCCATTGCTCGAAA

>AP019400|21|5|5847374-5847830|CRT
GTGCCTCTCCCGAGACCCGTTGCTCGAAA	CTATCGTACATATGCCTCACATT
GTGCCTCTTCCAAGACCCGTTGCTCGAAA	TTATCGTACATCTGCCTCTAATC
GTGCCTCTCCCAAGACCCGTTGCTCGAAA	ATATCGGACATCTACCTCTGATTGCGTCTCTCACA
GTGCCTCTCCCGAGACCCGTTGCTCGAAA	CTATCGTACATCTGCCTCACATC
GTGCCTCTCACAAGACCCGTTGTTCGAAA	TTATCGTACATCTGCCTCACATC
GTGCCTCTTCCAAGCCCTGTTGCTCGAAA	TTATCGTACATCTGCTTCTGATC
GTGCCTCTTCCAAGCCCTGTTGTTCGAAA	TTATCGTACATCTAACTCTAATC
GTGCCTCCTCCAAGACCCGTTGCTCGAAA	TAATCGTACATCTAACTCTAATC
GTGTCTCATCCAGGGCCCATTGCTCGAAA

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI35788.1\|5848569_5849865_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377581
AP019400.1\|BBI35793.1\|5855113_5855434_+\|hypothetical-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
AP019400.1\|BBI35777.1\|5836388_5836823_-\|UPF0403-protein-YphP	unknown	unknown	gnl\|CDD\|377667
AP019400.1\|BBI35794.1\|5855436_5858775_+\|helicase-SNF	unknown	unknown	gnl\|CDD\|223627
AP019400.1\|BBI35783.1\|5841497_5842394_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
AP019400.1\|BBI35782.1\|5840660_5841485_-\|sn-glycerol-3-phosphate-transport-system-permease-protein-UgpE	unknown	unknown	gnl\|CDD\|223472
AP019400.1\|BBI35795.1\|5858944_5859934_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238558
AP019400.1\|BBI35787.1\|5848131_5848500_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI35796.1\|5860061_5861720_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238558
AP019400.1\|BBI35779.1\|5837238_5837364_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI35791.1\|5852378_5853695_-\|xylose-isomerase	unknown	unknown	gnl\|CDD\|235487
AP019400.1\|BBI35784.1\|5842571_5843873_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
AP019400.1\|BBI35786.1\|5846203_5847220_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
AP019400.1\|BBI35781.1\|5839337_5840594_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367519
AP019400.1\|BBI35778.1\|5837041_5837218_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI35790.1\|5850779_5852276_-\|xylulose-kinase	unknown	unknown	gnl\|CDD\|198374
AP019400.1\|BBI35792.1\|5853847_5855008_+\|xylose-repressor	unknown	unknown	gnl\|CDD\|224851
AP019400.1\|BBI35785.1\|5843928_5846055_-\|amylo-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|225942
AP019400.1\|BBI35780.1\|5837440_5839099_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236901
AP019400.1\|BBI35789.1\|5849864_5850632_-\|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI35788.1\|5848569_5849865_-\|ABC-transporter-permease	gnl\|CDD\|377581	pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters.	8.61019e-27
AP019400.1\|BBI35793.1\|5855113_5855434_+\|hypothetical-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.38429e-19
AP019400.1\|BBI35777.1\|5836388_5836823_-\|UPF0403-protein-YphP	gnl\|CDD\|377667	pfam06491, Disulph_isomer, Disulphide isomerase. This family of proteins has disulphide isomerase activity, EC:5.3.4.1. It has a similar fold to thioredoxin, with an alpha-beta-alpha-beta-alpha-beta-beta-alpha topology. It has a conserved CGC motif in the loop immediately downstream of the first beta strand. This motif is essential for activity.	5.26354e-93
AP019400.1\|BBI35794.1\|5855436_5858775_+\|helicase-SNF	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	5.80372e-99
AP019400.1\|BBI35783.1\|5841497_5842394_-\|ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.5049e-86
AP019400.1\|BBI35782.1\|5840660_5841485_-\|sn-glycerol-3-phosphate-transport-system-permease-protein-UgpE	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.80187e-85
AP019400.1\|BBI35795.1\|5858944_5859934_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	5.97667e-46
AP019400.1\|BBI35796.1\|5860061_5861720_+\|hypothetical-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.21586e-33
AP019400.1\|BBI35791.1\|5852378_5853695_-\|xylose-isomerase	gnl\|CDD\|235487	PRK05474, PRK05474, xylose isomerase; Provisional.	0
AP019400.1\|BBI35785.1\|5843928_5846055_-\|amylo-alpha-1,6-glucosidase	gnl\|CDD\|225942	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism].	1.22168e-132
AP019400.1\|BBI35786.1\|5846203_5847220_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.71161e-127
AP019400.1\|BBI35781.1\|5839337_5840594_+\|hypothetical-protein	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
AP019400.1\|BBI35784.1\|5842571_5843873_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.23805e-92
AP019400.1\|BBI35792.1\|5853847_5855008_+\|xylose-repressor	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.86572e-73
AP019400.1\|BBI35789.1\|5849864_5850632_-\|multidrug-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.13132e-63
AP019400.1\|BBI35780.1\|5837440_5839099_-\|hypothetical-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	5.2677e-50
AP019400.1\|BBI35790.1\|5850779_5852276_-\|xylulose-kinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0

>AP019400.1|BBI35786.1|5846203_5847220_-|LacI-family-transcriptional-regulator
MATIKDIAKAAGVSVTTVSRALNGYDDVNEETRKKIKKVAKELSYSPNAVARSLVSKKTRTIGLIISDINRAGAKDAFSYEVLCGINDRTGDLNYDLLLFSTNPSKQMEKSYTALCKERNVEGAILSGLRLDDPYLQEVIEQNVFPCVLIDIPKTGDNVAHITSDNRLGAAMATRHLLESGHRNIALINGHSQAFVTEERYHGFRDALEEYDLLSNAELVYDGSFSEDGGAEAMYQILIRHPEVTAVFCASDLMALGAIRTLERMGRKVPEDISIIGFDDITISAYCSPKLTTIRQDKYELGYQSAQLLIDMLESRTENRKIILSSQLIIRESTRYLK
>AP019400.1|BBI35785.1|5843928_5846055_-|amylo-alpha-1,6-glucosidase
MDYRVIKNNDLFLMTDHYGDIPGNGSQSGLYMKDTRFLSEMKLTINGKRPLLLSSAADENFLARIRLTNEHEEEGGEVQFWRESLELIRERFIYEEVLYETISLTNFSTKPLAFDLGVSFEADFSDMFLIRGFQPAEELGKVTDRKVDKSGWHATYQGADGVQRDTDISWGGEADFLSETDVIGFAVKLAPTEVRRITFTVIPSVNGIRPVTNPREIALAELQATYERWMEQSPKVESDSKVLNQLYNRGVQDLRVLLTDFGHGLFPVAGLPWYAVPFGRDSLIAALQMLPLNPDVARGTLKMMAAYQGTELNPWKDEQPGKIMHELRNGELARSGQVPFAPYYGSIDSTPLFIVLAAEHAHWTGDTETIAQLMPNIERALAWIDEYGDRDKDGMVEYYQESSKGISNQGWKDSADSVVHANGDFAAAPIALVEVQGYIYQAKSRLAPIVEQLGHHELAQRLRTEAESLRQRFDGAFWMPDENFYAIALDANKDQVHSVTSNPGHLLMSDIISEEKAKIVAERLVAEDMFGGYGIRTMSSGSTGYNPMSYHDGSIWPHDNSIILLGMSRMGFKEEASTVINGLLNAAEHFEYSRLPELFCGYDDTIGYPVSYPVACSPQAWAAGTSVLIIQAMLGLQPDTLNNIVRLDPFLPQGINNLTVRDIPVANGTISVVLKRKDGTESLQVEVVDNSSGCSIEMINRSPDTALN
>AP019400.1|BBI35784.1|5842571_5843873_-|ABC-transporter-substrate-binding-protein
MKKRLSVFMLLMLALALVVSACGSKNNEGASPSSTQSNASESPKGQVEVTLAGWGSSPEEQDLLKQVLAEFEGKNPDVKVKYEIIADQYMDVIKTRLIGNEAPDLFYLDAFEAPALIEKGVLEPLDGYVTPEFDIGDFEAPTVNAFKSPDGKMYGLPKDTSTLALFYNKKMFADAGITAPPTTWDEMMSISEKLTKKKGSKVEVYGLGQAPELARQLFMLKAYGGQLVDDKGLATFASPEAEKGLSLVIDQHLKAKTAGQPSDVGAGWGGEMFGQQKAAMVLEGNWAIPYIQGNFKDVDFGTAEVPTVNGEKGTMAFTVAYVMNKDSKKKEAAWKLLSYLTGKEGMKTWTSKGFALPTRKSVAAELGYDKDELRGALVAGSSYATPWQAGPTLPTLMNNFNNQFVAAYTGQSPLPDALKKGQETANKEIKAAQ
>AP019400.1|BBI35783.1|5841497_5842394_-|ABC-transporter-permease
MAKPFGKHKLRDILSGYGFMSPAIIILGCFLLLPIGYSIFLSLHRVNLLGTVSYKFIGVGNFERMLDDARLWIALKNTFRYALIVVPSQTMLALVLASILNMKLRYRNFFRVAFYLPTVTSSAVLVLIFMWIYNRNGLLNFILESVGLPTYNWLGDPSVALLGIMIMNIWSTAPLFMVIYLAALQDIPENLYEAAEIDGANAWRKFWRITVPQLKPVTFYVIVMGIIGTFQLFDQSYIFSAGSGGPNNATLTMVLLIYQYAFKSLDMGYASAIAFFLAVVIMLITVVQRLLFKEEKLN
>AP019400.1|BBI35782.1|5840660_5841485_-|sn-glycerol-3-phosphate-transport-system-permease-protein-UgpE
MRSSNRFRPFFYILLALYAVITFVPFVWALSASFKTLPEIVAGGINFIPKHFTLDNYRTIFRQEPLFVRWFFNSAFIAVTVTAFNLLFNSMAGYALARIRFPGSTLMFYSILAMIMIPGQLTIIPSYLIIKELNWLNSYQAIIVPMAAQATYIFMMRQFFISFPKELEEAAELDGLGRFGLFTKVVLPLAKPALAAQTIFIFMGAWNEFLKPLMLMSDKAMFTLSVGLNTFKGQYISFWNYIMAASIIMTIPALLIYIFFNRFFVKGITFTGTK
>AP019400.1|BBI35781.1|5839337_5840594_+|hypothetical-protein
MKYEVIVIGGGSAGLMASIAASKHGSSVLLLDKGEKLGRKLGISGGGRCNVTNNKDIDELIKHIPGNGRFLHSSFANFDNKAIISFFENLGIRLKEEDNGRMFPVTDKAKTVVDTLVNQVLKQGVEIKLNSPVETILYDKQKVAGVRLKSGEVLSCRAVIVASGGKSVPQTGSTGDGYPWAEKAGHTITELFPTEVPLTSNEPFITSKELQGLSLRDVSLSVWNPKGKKIIEHQGDMLFTHFGISGPIALRCSQFVVKALKQFQVGNIEVSVDLMPEHSVDEVYTETLKLVERESKKAIKNILKSCLPEKFIPILLQKSELSETLTYDNIPKQDWMQLAKLIKRFPIRVYGTLSIEDAFVTGGGINLKEIDPRTMESKLVDGLYFCGEILDIHGYTGGYNITAAFSTGYTAGMNAVMR
>AP019400.1|BBI35780.1|5837440_5839099_-|hypothetical-protein
MWKDSVLQVLITFLPVFLFTVWYSRPERTRYTQLFLSITCTIAMLLNMHFTSVSEEGFHFDFRNIPFILGTMYGGTPAAILMLVIYTASRVGEMSHRWEYYIFAVFLIIYVPILLSRISAFQEGNKQKKLKIVAYLFTFLVLFQIAEHITVITEIKSVILPTYLLVALPFSVLFIIVTMVSVHFIELGFERIQLQFQLRDVSNKYRKEMRRLQQFIDNSPLIVVYCDNKGLITHVNDMALKFVNPVERNDILGKKFSILMEKMDLKFETNPVERILKGEDKLTEMLRVNGRTFYTVSCPMYNAPMEGSEGVLFIGHEVTELHRLKDEVDRMERLSLVGQMAASITHEIRNPMAVIRGFIQLLNERSPVAQQSYFRIVLDELDRANGIINDFLSLAQNRIVEKESSNLNDLLNELSPLIWADANMRGQMVDLQLCEDMDLLQMNSKEIKQLVLNLARNGMEAMDDKGILKIETINFKDTVQLRVIDNGIGMSEEKLAQLFEPFFTTKMNGTGLGLALCLSIIERHNGKIHVESTEGQGTIFIVSFCKPDRFCW
>AP019400.1|BBI35779.1|5837238_5837364_-|hypothetical-protein
MPNSQGPSKSGRKEADRAKKERSPQSPGYDKKLDGPNRPST
>AP019400.1|BBI35778.1|5837041_5837218_-|hypothetical-protein
MSKPYAGIKPACGNNDSESESIKIEIRSEFRDNRGQWKPFGDWDDDEYFPVPEVLDEP
>AP019400.1|BBI35777.1|5836388_5836823_-|UPF0403-protein-YphP
MSMSFERYMMNSVQPMRDDLTRLGIQELTTPEEVEAKIPTASGTTLIVINSVCGCAAGQCRPGVADALQHDVLPDHLYTVFAGQDKEATAKAREYFLPYPPSSPSIALLKDGELVHFIERHQIENRSAGDIAADLTSAFDRFCR
>AP019400.1|BBI35787.1|5848131_5848500_-|hypothetical-protein
MNHAALMFQFPDESQARLAGETLLDLGYEPQQHGGGRLHIHVQDEDLTSALEIVQCYAGQLLEHAHAEVIDVTNTAYGMEEISIPAHIVNEDWDEGYKAADSPDSKEQWAADDGSYNHFNAT
>AP019400.1|BBI35788.1|5848569_5849865_-|ABC-transporter-permease
MSEPRIDVFNAARFKPVPLFLERMSSYWISIWRCWRTVLDWTVWLYIFIPVLFILGGMYRDLIINPPEWLYDIPISVFLTPLGLLQLVGSYRTFAEPGDGLFLHRYNRWIRGMTVSGFVYSFVTRILISSAYIALISPLLLHVLGLSISYLIYLVIYCVTSGFVWMMLKDRYKQKWRGWLQVLALLFVRLVYMTVFVWLAVKGEHDYVILVIPSVIFLLVALWQMRIRLRMKGTLLHEINVENEAYIASVGWILRDTMEKKPVPKRRGPILFKRSQPFVKHRNDTYRLLDSWFKSVLRRMDLMKPLMYLTGLGAIAVGSTPIALAIILWLVLPFLLLGLLQRQWLQWLTEPYIALFGWRDDILEQASRKAKFWSGLPTVTIWAILIGVRIGLEFGGIGWIATVILPAIGFFWLKGVNEIVSSFGALRRKKE
>AP019400.1|BBI35789.1|5849864_5850632_-|multidrug-ABC-transporter-ATP-binding-protein
MDNETVPLFQADILEAGYEPNNPIVREVVINVHAGERVGLLGPNGAGKSTIMKGLLGQLPYWKGKILWHGKEEKDNRGVEMSSQVAYIPEQPILYERMTLWEHLVLVAAAGSIPEELFRERADKLLRRFRLKAFQHEYPVKFSKGMQQKTMLIIGFLLQPELYLVDEPFIGLDPGAVLELLDALDEERQRGAAILLTTHVLDSAERLCDRFVLVNDGGVAAAGTLDDIRITAKCGPEAHLFECFHKLTYVDEVQV
>AP019400.1|BBI35790.1|5850779_5852276_-|xylulose-kinase
MKYVVGVDLGTSAVKTLLIDQAGTLHAEATREYSLYHDKAGWSEQDPEDWVAGTAGSLQDLIVKSGVNPEDIEGISFSGQMHGLVLLDANDRPVRRAILWNDTRTTEQCREIERTLGDKLLSITRNPALEGFTLPKILWVKQYEPEVFARASHFLLPKDYLRLRLTGAKHMDLSDAAGTLLLDIAAKRWSEDVLSAFEIPASYCPPLVEAGGYVGAISAEASQLTGLSSSTKVFAGGADNACGAIGAGILSPGLTLCSIGTSGVILTYEADASADYEGKVHFFNHGKENAFYAMGVTLAAGYSLSWFRNTFAKGETFDAMLEGVNDIPAGSNGLLFTPFIVGERTPHADAKIRGSFIGIDGSHTRAHFARAVMEGITFSLNESIDLFRAAGKTVDTIVSIGGGAKNPVWLQMQADIFRANVVALENEQGPGLGAAMLAAVGSGWYPTLDACGEVFVKRARTYYPNENTSKKYEQLFRIYQQIYTQTKEINESLHAFRS
>AP019400.1|BBI35791.1|5852378_5853695_-|xylose-isomerase
MSHFSNVPKIQYEGRDSKNPFAFKHYNSQEIVFGKTMEEHLRFAVAYWHTFNASGADPFGAGTAVRAWDSLSPLDRSKARVEANFELLEKLNVPFYAFHDADIAPEGATLAETNKNLDVIVAMLKDYQKSTGKKLLWNTVNLFTNPRYVHGASTTSNAEVFAYAAATLKKGLEVGKELGAENYVFWGGREGYESLLNTDLKLELDNLGRFLHMAVDYAKEIGFDAQFLIEPKPMEPSKHQYDFDSATAIAFLQSYGLKDKFKLNIEANHATLAGHTFEHELRTARINGMLGSIDANQGDPLLGWDTDEFPTDLVTTTLAMFEILKNEGGIGRGGVNFDAKVRRSSFEDEDLFFAHIAGMDTYARGLKAAAKLIENRVLDDIVSHRYRSFSEGIGADIVSGKATLQSLEAYVLQAKPIRNESARLEQIKANLNDVIFSV
>AP019400.1|BBI35792.1|5853847_5855008_+|xylose-repressor
MTKSTGDQALIKRINTAIVLEYILRGSPLSRAQISEQSGLNKATVSSLVQDLIDSSLVKEIGTGQSSGGRKPVMLEFIATSGYSIGVDLGVNYIRGVLTDLRGGIIAERTASLPLPEQTTAIEQLCSCIEFLIAKAPASPYGIVGIGVGVPGLVDENGAILFAPNLKWRDVPLQNLLTERFSIPITIDNEANMGALGEQKYGAGRSINNIIYVSVGIGIGTGLILNKSLYKGASGFSGEMGHLSIEAHGKSCTCGNYGCWELYASEQALLEQAAELGFGDLESLLAAADNGQEDVIELFRGIGEYLGIGIANIVNVFNPDAVVIGNRMSQARPWLEDILRQTVVQRALSFHARKVQLLFAELGERSSMLGAAEMAIAGFFVRIKSV
>AP019400.1|BBI35793.1|5855113_5855434_+|hypothetical-protein
MNDKLAEMAELLKLLGDRTRLAILGLLQERDLCVGDIVELLGTSQPNASQHLRRLKSSGLVRESKRGQWVFYSLNLDDFPDLRIFLSQLPGRKERLRSLSGLVDRG
>AP019400.1|BBI35794.1|5855436_5858775_+|helicase-SNF
MSFQLTKRVIKLLCGPFSYERGEVYYHAKKVKIINYDPDASIYEATIKGNMDYAVKAEIDSNGDVTAECTCPAYASYSRKYCKHIAAVLLNIHDLQNAGRSPMRSYSYKLTPDEHLSSEAGRLTPRSTISTARSAIESSAVDTGLTDGMLGLFGSKPLRPSRNRFLADTRELLEVEITCSPFPYGYRKYMFGVELKVGSKRLYIVQKIREFLDRVDRSEPHVFSKHFTYDPTIHSFSKENDEIIRQLIQIYHSEKMYRETSSIYSAHASPLSGERLLLIPPYSWESLYPLLTRAPEVKLEQDNRTYVGIATSDELVPLHFDFDQAKDDSYQLDVQGLDRITVMEPYGIVIAEGKLLKLPADQCKRLSELKQMLEASHKQNVTIARDQMEPFMEQVIPGLMKLGSVRIAQAVSERIVHTPLKANLYLDRVRDRLLAGLEFQYGDIIINPLEATGHRHQTDRILMRDGDKENQILELMDQGNFAKTESGYFMEDEDSEYDFLYHIVPLLEKLLQVYATTAVKARLYVGNAPPKIKVDVDERTDWLEFRFEMEGIPENEIRYLIRSLEEKRKYHKLANGALMPLEGVDYEEINRFMNEMGILKGEIQGPEFRLPVFRGLHLMDVEKQGNAIQLSKSFRKLLDNMRNPDNLDFPLPDNLAPILRDYQKYGFQWLKTLAHYRFGGILADDMGLGKTLQSIAFLVSVLPEIREQQLPAIIVCPASLMYNWRNELKKFAPEIRVVIADGSKTERSHALNQASGADVIITSYPLLRRDVEMYVEPSFHTLILDEAQAFKNYATQTAQAVKIIQARYRFALTGTPVENAIEELWSIFDAVFPELFHNRRAFNELTREAVAKRVRPFILRRLKTDVLKELPDKIESVQASELLPEQKKLYMAYLAKLRKETLKHLDEEGFNKSRIKILAGLTRLRQLCCHPALFVEGYSGSSAKFEQLLEIVEECRSSGKRMLIFSQFTEMLGLIGRELSNQGVSYFYLDGKTPAFERVELCNRFNEGQRDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQQAADRAHRMGQKNVVQVLRLVTQGTVEDKMYLLQQRKKNLIDEVIQPGQESLSTLTEQEIREILMIQ
>AP019400.1|BBI35795.1|5858944_5859934_+|ABC-transporter-substrate-binding-protein
MKTARKLVVTIAIATMMVALLAACGSNNNSNSKESVQPSNSPTATTNTAAESATKSFNDSKGHTVEIPATPKKVVYTGMDLGDLLILGVKPAGAALGIIAPQVAYPDLLDGIEDIGDVSANLEKVLSLEPDLILMDSGGTYYEPKEYDELNKIAPTVAYDRLTTFERVLKMGDILGKTKEAEEWITSFKAKGEELKKQLGVTDGATATVVIRLGKQFYVMGNSGFANILYDTLGYTPTPLVKETLIDKNERFADLSSELMPEYTGDYLFVLTDEDEAARASADSFTNEALYKSLKAVASNQVYYIPTKWNFDDPITKDRLIEVLPTIMK
>AP019400.1|BBI35796.1|5860061_5861720_+|hypothetical-protein
MEQNEQKVPFLHDILFSICAVGTFDSCRDAVDISPLEGHHAIIAFTKGNGSLITDEASLHFKPGICLIVRPGGPIKFDELVGKDITGYWITFDIYPLGMSTPSPGMPNCFPYGQQISPTPFIKFVDLLEQLAIKHHNANRLDSFKQQIRLQELIVLLLESHQATQNPTDAMQAVERSVAYLEDHYIENITVELLSQQAGVQRWEYSSLFQEITGFKPLDYLTEVRMKRAKELLLLSNAPLRDIAHRVGFKDEYYFNRRFRNAMGISPKQYARTHQSRVSIQDYQGSPIELPLQQSRIVVTGHILGNLLALGVRPVGADLTVIGKQVVYRNELHNIMDIGPSEDLERIKALDPDFIFHCCTIGDVTDPVAQIAPTLVINRLDSNFDQLRLMATVVGKRPHAEKWIKEYKTKSKALWSQFRLDIGINETVTVIVVVDGKLYVMGNYGLSFTLYHPLAFKPSEKVREMIEMGIDFRKISTEMIESYVGDRLFLLVGEDPISVNEAKRLINSPLWRELSPVRKNLVHFMDAKWNYGDSLTLERVLTELPGVLRNSS

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Crispr_ID: AP019400_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_23

6841497-6841834

Orphan

Consensus_repeat	Method
AAAAGTAACATTAGTGAACNCACAGTNCTCTA	CRT

6 spacers

The CRISPR arrays of AP019400_23

>merge|AP019400|23|6841497-6841834|CRT
TAAAGTAACTTTAGTGGACTCACAGTACTCTAACGCCCTCGTAACCACTCAAAAAGTAACATTAGTGAACACCCAGTGCTCTATCACCCCTGCCAGCGAGTAAAAAGTAACATTAGTGAATCCACAGTTCTCTATCACCCCCACCAGCCCGTAAAAAGTAACATTAGTGAACCCACAGTTCTCTATCACCCCAGCCAGCGCAAAAAAAGTAACATTAGTGAACCCACAGTTCTCTAACGCCCTCGGCACAGCTCAAAAAGTAACAATAGTGAACGCCCAGTGCTCTATCACCCCTGCCAGCGAGTAAAAAGTAACATTAGTGAACCCACAGTTCTCTA

>AP019400|23|6|6841497-6841834|CRT
TAAAGTAACTTTAGTGGACTCACAGTACTCTA	ACGCCCTCGTAACCACTCA
AAAAGTAACATTAGTGAACACCCAGTGCTCTA	TCACCCCTGCCAGCGAGTA
AAAAGTAACATTAGTGAATCCACAGTTCTCTA	TCACCCCCACCAGCCCGTA
AAAAGTAACATTAGTGAACCCACAGTTCTCTA	TCACCCCAGCCAGCGCAAA
AAAAGTAACATTAGTGAACCCACAGTTCTCTA	ACGCCCTCGGCACAGCTCA
AAAAGTAACAATAGTGAACGCCCAGTGCTCTA	TCACCCCTGCCAGCGAGTA
AAAAGTAACATTAGTGAACCCACAGTTCTCTA

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI36619.1\|6828878_6829877_+\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270275
AP019400.1\|BBI36629.1\|6842080_6842662_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314467
AP019400.1\|BBI36625.1\|6836717_6836882_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI36628.1\|6839990_6841391_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223715
AP019400.1\|BBI36621.1\|6831074_6831854_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|183100
AP019400.1\|BBI36638.1\|6856336_6857464_+\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|143502
AP019400.1\|BBI36636.1\|6854964_6855093_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI36634.1\|6851952_6854508_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225461
AP019400.1\|BBI36626.1\|6837007_6839059_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197715
AP019400.1\|BBI36630.1\|6842837_6847886_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|306825
AP019400.1\|BBI36633.1\|6849214_6851572_-\|DNA-helicase	unknown	unknown	gnl\|CDD\|226482
AP019400.1\|BBI36627.1\|6839358_6839994_+\|putative-transcriptional-regulatory-protein-YcbL	unknown	unknown	gnl\|CDD\|223816
AP019400.1\|BBI36632.1\|6848838_6849198_+\|Hg(II)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
AP019400.1\|BBI36622.1\|6831872_6832643_+\|aliphatic-sulfonates-import-ATP-binding-protein-SsuB-1	unknown	unknown	gnl\|CDD\|183055
AP019400.1\|BBI36635.1\|6854502_6854691_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI36623.1\|6832716_6835785_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225183
AP019400.1\|BBI36631.1\|6848089_6848728_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380314
AP019400.1\|BBI36637.1\|6855096_6856335_+\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|224662
AP019400.1\|BBI36624.1\|6835813_6836590_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234605
AP019400.1\|BBI36620.1\|6829915_6831103_+\|alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI36619.1\|6828878_6829877_+\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270275	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the sulfonate binding domains SsuA found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.68462e-140
AP019400.1\|BBI36629.1\|6842080_6842662_+\|hypothetical-protein	gnl\|CDD\|314467	pfam11579, DUF3238, Protein of unknown function (DUF3238). This family of proteins with unknown function appears to be restricted to Bacillus cereus.	6.3653e-91
AP019400.1\|BBI36634.1\|6851952_6854508_+\|hypothetical-protein	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	7.7312e-120
AP019400.1\|BBI36628.1\|6839990_6841391_+\|hypothetical-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.44372e-52
AP019400.1\|BBI36621.1\|6831074_6831854_+\|ABC-transporter-permease	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	1.55209e-105
AP019400.1\|BBI36626.1\|6837007_6839059_-\|hypothetical-protein	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.43349e-18
AP019400.1\|BBI36630.1\|6842837_6847886_-\|hypothetical-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	2.35496e-11
AP019400.1\|BBI36633.1\|6849214_6851572_-\|DNA-helicase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	0
AP019400.1\|BBI36627.1\|6839358_6839994_+\|putative-transcriptional-regulatory-protein-YcbL	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.72372e-64
AP019400.1\|BBI36632.1\|6848838_6849198_+\|Hg(II)-responsive-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	6.16217e-21
AP019400.1\|BBI36622.1\|6831872_6832643_+\|aliphatic-sulfonates-import-ATP-binding-protein-SsuB-1	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	3.19792e-119
AP019400.1\|BBI36638.1\|6856336_6857464_+\|carboxynorspermidine-decarboxylase	gnl\|CDD\|143502	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.	0
AP019400.1\|BBI36623.1\|6832716_6835785_-\|hypothetical-protein	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
AP019400.1\|BBI36631.1\|6848089_6848728_-\|hypothetical-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	3.09008e-57
AP019400.1\|BBI36637.1\|6855096_6856335_+\|saccharopine-dehydrogenase	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	4.22237e-174
AP019400.1\|BBI36624.1\|6835813_6836590_-\|hypothetical-protein	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	1.63694e-07
AP019400.1\|BBI36620.1\|6829915_6831103_+\|alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0

>AP019400.1|BBI36628.1|6839990_6841391_+|hypothetical-protein
MKNRTKLWLLMLISAIISILLFTSISLVIGKGAKGYGLNSLNAIGHEVIDAVAKHQAFHVKNITPILDNFHSKYPEIRYEWVSADGSTTYDTFGEKKTYNFGQLADRLRYMPQSLWGVDEIVTLVFSISQGDQPYYLLISLSSNDMKRGQVFIFMRGFKVFANLMIPLVVALLIPYLLSLWFFSSINKRINKLNHALGQLNLKSEITVLENTNKDEIGQLTAHYNAMARRIQNQGEQIKQFDARRNLLLSNLSHDLRTPLTMILGYAETIRAGLYKDEMELQASAKVLLHRSRYIDKLLDQLLDITRQDEGNLELHVESHNLSEMMRKVAADYLMFLEGQNFTVEINIPDEDIHAWVDASLIERALRNLLDNAIRYGSEGHYLEIGLTEKDDSLFMTVIDRGRGIPYQDQKHVFERFYRVDGSRKGEGLGIGLSIVQEIIALHGGSITLKSFPFERTVFKIQLPNH
>AP019400.1|BBI36627.1|6839358_6839994_+|putative-transcriptional-regulatory-protein-YcbL
MHLEQAELQVIEATSGRQAIRYLQEYPIELLILDLMMDDGNGFEVLQYLRKENAGPLVIALSARREVQDKILTLGLGADDYVTKPFSPVELVARVQAQLRRHRPHSSYPAKILRLNKLVLDIDNYCLRNDGKSFTVTPVECRLLELFMQNPDRVLTKREIYKHVWNHENFDDNNLSVFISKLRSILEPTEGSLHYLHTIRGIGYRFSGDGQ
>AP019400.1|BBI36626.1|6837007_6839059_-|hypothetical-protein
MYIGLVKVGVPEERIAVQIDQLERHYLVGREIEIQYFLQQLTVGGQQGRMLNLYGTGGVGKSYLIDEFRRLTVNLGAIFLLMDSRGFSHTPQDFCNQLLRMLGYPKEKLHQIADPQALLELCHDILRAKSMKQKLVLALDTFEGMVDMEIWLREAFLPRLHPDILILIAGRFPLQGLWLSSPAWRHWIHRMPIGDLDYSSVKQYLERSDISQESMIKQIWMKTRGHPLTLSLIVSTTMVQNIQSLALVDGTEVFKHIVSIWLTEVPNEDLRELVETVAVLRHFNQEFLSYVLDRQVKTDLFQRLVGLSFIRRVERGWILHDLMRDAIAYELRLRQPEHYDLLSKRCIMFYYNKMIKLPKTKAITWEGVEWYYYTGDHVVRHFSFQKSTPYVMETLNPSNWAEAEQYLDNRHINPKEVCFPFQNPDTGERLEYRISKEESLYSVKHIHLQELYELDPGIVKLMRDQQGAICGMTAIIPIHIGTLDYLQTHPLSSAYFQSLSDHKLKELRVPKEHNAGYFVRTIDVADLEDVAIRTTAGLTFISLLTSSDYVVAAPPDIPFLKDFHLSLGCEQAKNVAHYEYDINAPAPYYVLDTRSGKLQSYLNKMIASFGLVDHSKQSDDGMQMLSEREKEVVVLLVKGYTNQEIAADMHITEVTVKKHLTAAFRKLNVKSRMQLVNSYLKKT
>AP019400.1|BBI36625.1|6836717_6836882_-|hypothetical-protein
MSNEEQPKEIELENLEKPLTEEELKETTGGVGLIDPRSPLPFAPPRAGRNRGAN
>AP019400.1|BBI36624.1|6835813_6836590_-|hypothetical-protein
MDVMELVAFNVNGTEWRLRNVLKLACMEGRFSAVEDSIRRAVTLEYAELHKISIDEQEWKAKANELRQQLGLYSVAETLVWLKARGLTTADLLESAKARLLTEKVKRIVTEDRIDAYYLKNRLSYDKAILSQLIVDSREQAQELLFQLEEGEPFYQLAQTYCLNSSSKYDGGYVGAVGRSEMSGEEESFVFSSEAGQSGGPFPTGSYYRLLYVWEVIPASLTEELRIKLANLIYEEWLNEAVKRSEVDIKLWGYLAGK
>AP019400.1|BBI36623.1|6832716_6835785_-|hypothetical-protein
MRDLHHIVLDTIPIFQVLSPQEKEELFASFERLSFHMGDTIIEAGERAESFHLILAGKVRMIGKDEDGKELNFGLIEEGSHFGQEALLNEQFQEHALRASAKLELLRLSRTMFMRMIDAHPELRVYLLEQLADDAMRTFLKRTALFAPLHHQELRSLLDIMAMKEYAPGQAIVSEGETGDAFYILRSGTASVRKDSEGGRKLNTIKPGEFFGELALLTGDPRKASVIADDAVSVFSLAKSDFDKLIIKYPKVRETIIGIASAYLQSAETTLNAVASVNAKDSEVNAAEIFAEEAEQEKQQRYGARRTWRLKNRFPVRIQQSEMDCGPTCLTMIAEHYGKRLSIHRLRELAQVGLEGSTLFNLCKTAESIGFQADAVRSSLKGLAEHTLPAIAHWKGNHYVVVVKVDERFVTVADPAVGLLTYSHDDFLKGWTLNTVFLKPVEAFFTQEESKPSFKRYWAFFASHKRALIHLLWLTLLLQVINLALPLFTQQVIDRVLVGKNYDQLSIMLIIMLGVSLLTMLVQSIREWVIAGTFIKIDIDMIMSFYRHVFRLPMRYFATRKVGDILTRAGENQVIRQFLVTNSMNAVLNVMTIVVYMVIMFSYSVTLAWIALAFIPCFIALTLIVTPLMKRNSRKQFQADVELQNVLVEAIGSMRTVKALAAEDEVRKKVEGRFRQSTFVQMKGWKIDIFSGSVATVLQTLSGITVLYAGAVFIIGDKMTVGELMAFSAVFALVTNAALGLIGMWDEFQGVRIALERLDDVFETEVEEADLNRLTALPKLTGAITFERVSFRYNSDGKNILQNITFDMAPGQTTAIVGRSGSGKSTLANLLLKLYAPSSGVVRIDGHDLKQVQAETLRKQIGVVQQEAGLFSGTIHENIAYQIPDASMDEVMAAAMLAGAHEFIMTFPNGYDTQVGEKGASLSGGQRQRITIARALIGNPRILIFDEATSALDNESEKIIQRNMATILKDRTTLIIAHRLSTIRNADRILVLDQGVIAESGTHEQLMMDKGLYHMLVSQPLE
>AP019400.1|BBI36622.1|6831872_6832643_+|aliphatic-sulfonates-import-ATP-binding-protein-SsuB-1
MSNIHEGNQLHIESVSKRFGEKDVLQGVTLAIPSGQFVAIVGRSGCGKSTLLRLIAGLDEPTEGKLSFDSSDIKGIREDTRMLFQDARLLPWKKAVDNVKIGVKSGNVDKALEALGQVGLKDRAQDWPGVLSGGQRQRIALARALAGSPQLLLLDEPLGALDALTRIEMQQLIENLWAEQQFTAVLVTHDVSEAVALADRVILIENGQIALDILITLDRPRERDSGFIHFEKLILNRILERTEDDLSKFKRNSYAI
>AP019400.1|BBI36621.1|6831074_6831854_+|ABC-transporter-permease
MGLLNKLLRSRFAPAFVPLLILVTWQLLGQFGFISSRTLPTPLKVAEAGLSVIENGQLFHHIFISSRRSFIGLAIGGGIGFLLGVINGVSYTANRLLDSTLQMVRNIPHLALIPLVILWFGIGETAKIFLVVLGVFFPIYMNTLHGIRSIDPGLVEMAKVYGLRGFSLYRHVIMPGALSSILVGLRFALGFMWLTLIVAETIAASEGIGFMAMDAREFMRTDLVVFSILIYALLGKLSDNAAKWLEYRLLKWNPNYAKL
>AP019400.1|BBI36620.1|6829915_6831103_+|alkanesulfonate-monooxygenase
MEIFWFIPSHGDGRYLGTTEGARTVDYDYIRQIAQAADRLGYHGVLVPTGKACEDAWVAASSLIPATQRLKFLVAIRPGLMSPSTAARMASTFDRLSKGRLLVNVVTGGDPHELAGDGIFLSHQERYEQTDEFLTIWRRLMQGEEVTSSGKYLRTEASEVLFPALQKPYPPLYFGGSSPAAQQIAADHVDYYLTWGEPPAEVAEKIAQVRQQAEAAGRTVKFGIRLHVIVRETEQEAWEAADRLISHLDDKIIAEAQQILGRYDSVGQKRMSALHNGDRASLIISPNLWAGIGLVRGGAGTALVGDPVTVAERIKEYAELGIESFIFSGYPHLEEAYRTAELLFPLLPLTQQDEPNPSLTIQASGELIAYNKRPKSGNDLEAEGGNYGLAQQTVT
>AP019400.1|BBI36619.1|6828878_6829877_+|sulfonate-ABC-transporter-substrate-binding-protein
MSKFIGINRKKTTLITALLVSIVLLVLSACGNNNASKESATSSTNKTEKTVRIGYQKYASVNILKERGTLEAKLAEINYKVEWTQFPGGPQLLEAINVGSIDFGNVGEAPPIFAQAAGTPLIYLGHSPASPKAESILVPENSSIKTGADLKGKKVALNKGSNVHYLLVKYLEKEGLKYTDIEVVFLPPADARAAFESGSVDAWVIWEPFYSAAQLATKARVLADGTGLVDNYEYYLSSRDLAEKHKDAVDVILAQLKESDQWAKDNQGELAEILSKALGIDVPSIKQALTHRGFGVEPITDDIIAAQQKIADVFFELKLIPKEIKISDAIIK
>AP019400.1|BBI36629.1|6842080_6842662_+|hypothetical-protein
MAELLKIRGSVFIGGMLYLPPIQDPSTGLIYEYQGDAREFTPHAVNTGRCRVEQEVVIDFVKQRIATFANTGVTVLKLTTPDGTVEFKRGKASTEGILVENETWTEDAVSLTMRASAGNPLHPDAPTVDYSLQIIAYKNGEVQIKGSHDGFPCYEFYKQLDYGDFQLLHAHDFRKTGDTPAAMAGEMEYHFEC
>AP019400.1|BBI36630.1|6842837_6847886_-|hypothetical-protein
MRKLGKKSLFIILTILLGLGAVVPEGIFGSSKAFAANEFLGSGTSSSPYLIGTADQLNQIRGNYLDKNLYFKLTKNIDLSTSSYKDDWTPIGNDRRSPFSGNFDGNGFVINGLKIDSNGNNLGLFGLTNTESVITNMKLENVDVTGNNYVGGLVGANKGKVSNSYVTGKVTGKDGVGGLVGDNGVTITNVSATIDNSYANVSVNGSSYASGGLAGKNKGSINYSYATGDVHGDYAVGGLVGENDGTISYSYATGEMIEGQSIGGLVGSNSTDSYINNSFATGKVNGTFSTGGLTGFNFGSISKSYSTGDVIGLQHVGGLVSNLEVKGIIRDSFTTGNVSGYSFVGGLIGFAYSDSEGSYSNSYTSGNVSGDLAPIGPLTSNGEGNNIGSISLDENMKGPVDGWDFNTLWGIDPLRNGGYPYLQDFLFQLKYDGNGNTGGTVPIDSILYLPGETASVYAGSLNLVRTGYTFIGWNTQENGNGKSYSGSFEIMPYTTLYAQWAAQSSSATLTSGIGIVSTGGTTTETITNIPYGTTLAILKEEITPATNATFEIFDADGVNVATNLTSGKKVIVTAADGITKVTYIVSVIANSANDITAFSLAEQTGAATINKTAHTVVIQVARATNVTNLKPTFTLSPEASARVGTVDQVSGSSANNFTTPVTYIVKAGDGSSQNWTVTVTKSSEKDITAFSLSTVTLTKAATISTIDHTVDVEVVYGIPLTSLSNLKATFSLSPEASAKIGTVNQVSGTTANDFRTPVKYLVTAADGSVQEWIVSVSIESSNAKDITAFSFSSQTKPATINTTAHTVAIEVKYGTNVTNLIATFTLSPASAARVNGTSQKSGTTANNFTNPVTYIVKAENGTTRNWLVTVTVAPPSSANDITAFSFVAQSKPATINTTTNTVTIEVKNGTNPNGLKATFTLSAGASAQVGTTAQVSGTTTNDFTSPVTYIVTAQDGTTKAYTVTVTEASSSAKDVTSFGFAELTPPVAGAINGTNITLTVPHGTDVRESVATFTLSAGASAQVGTTAQVSGATRNDFTSPVTYTVTAQDGTTKAYTVTVTEASSSAKDVTSFGFAELTPPVAGTINGTNISLIVPHGTDVRGLVATFTLSAGASAKVGTTTQVSGVTKNDFTSPVTYIVTAQDGTTKAYTVTVTAAPSSAKDVTAFGFAELTPPVLGTINGTNIAITVPHGTDVRELVATFALSAGASAQVGTTAQVSRTTKNDFTSPVTYIVIAQDGTKQNWVVTVTHSAALSHVATITSTIGTVTVGGTGNESISNIPYGTTIAALKAAITQAAGATFEIYDADGTIVATTLISGNKVIVVAQDGTTKVTYTVSVNAAPPSYGGGFTFPSEQDVSSTDGKLTVPAGKAGEVSLEKEIFVSIPANATDKELKITITKLTDTQNLLTKNEVLVTAIYEIMKNFRENFNNPVSISFAFDPASLKSGQTAAVFYYDEVKKSWIEVIGGLITGNQITVKVNHFAKFAVFATGQSLNEQEHPGPTKHLSDIDGHWAETAIKQAIESGIVTGYLDGTFRPNRIVTRAEFTVMLMNTLKPQGSDTSASLAFTDVDKIGSWAKGAVAQAVQAGYIKGNADGSFRPDAVITRAEMAMIIANATGLSLEANSSTDFVDDKAIPAWAKGAVSAVRKFGFINGKGANKFEPDAGTTRAEAVTVLLKVLAQKSR
>AP019400.1|BBI36631.1|6848089_6848728_-|hypothetical-protein
MFNNILNNDFASIVKGRRSVRHYDESIKISKEEISEMISEASLAPSSANMQPWRVVVVDTPEGKDKLRPLVRFNTAQNDTSSAMLLIFGDTQSELIVEEIYNTAVEQGKMPAEVRDRQLGAILSMYPTLPREIKVEVAKVDSSLFAMQLMLVARAHGYDTNPMAGFEVDQVAKAFDLDEERYVPVMIISLGKAKEEGHESVRLSSDKITFWK
>AP019400.1|BBI36632.1|6848838_6849198_+|Hg(II)-responsive-transcriptional-regulator
MKINDVSKLTGLPISTLRFYERKNLIPDTFVTRDANNYRVYSEEIVEFLEDIKALLSVDFSIEDLSLLVDQQLNLSYEVKKKMVEQKIKEIDDVQKQLKKSKKFLTAILEGKANFQTKC
>AP019400.1|BBI36633.1|6849214_6851572_-|DNA-helicase
MVNPKDWQQEQERLDVVTEGLRSKIAELEPEVSGLFNQVTDFRKRFWEEVTVNTTTHEDFADTFYSIKQQEVLLSERERTHRQRMQRWKSMNRLLPSPYFGRIDFREDGLSLDEQIYIGVSSFVDVDDMSFLVYDWRTPIASMYYDYSPGSADYETPDGQITGEMTLKRQYQIRDGKLRNVFDTSLTIGDELLQQVLGAGGDAQMKSIVATIQKEQNAIIRNDKRRMLIVQGAAGSGKTSAALQRVAYLLYKHRKTLKADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLAYWLGSTLGLEDPFEQIEYVLNSKLSQEDAARQSGIEYKASEAFLQALQHYALWLGKEGMLFHSIRFRDRELITSEQMKSRFYSYDSSIGVANRVELLREWLLRELTSLERMEQEALWVQDELDYLDNEQYAEAYSTLLKKDQQEEEVFDFAGQEEELLRRMIVREQFKPLRRHAMRFMFVDTIGLYDQLFSEEASYRQMTNETEIPNQWPEICKQTKEKLSRLELFYEDATPFLYLKELIEGTRKNTEVRHLFVDEGQDYSPFQYAFLKQLFPRASMTVLGDFSQAIFPQATNLHNVDSPLIRLYGKEETSLIRLDRSYRSTRDIVDFTKSLLHDGEGIVPFDRSGRKPLLVKSGSSDKRAVRMIDDLAELKTEGFDTIAIITKTEAESRDAYEALMKQGCEDLRLITKETLTFVKGTVVIPAYLAKGVEFDAVLIYDASTLAYNRESERKLFYTACTRAMHRLVLYSIGEWSPYLQALDTTLYEAVQ
>AP019400.1|BBI36634.1|6851952_6854508_+|hypothetical-protein
MIVRSKLHIPLVRRDLVARPRLIHKLNEGMKVKLTHVSAHAGYGKTTALSEWAKQCGVLVAWVSLDTRDNDYIQFWSGITSSTQQIIPSFGEAMCPLLEKGLWGSLEHVIPTLLNELNRITSELAIVLDDYHLIESPDIHNSLSYFLERLPSHIHLYIASRSELVIPTARLLAKGEYNQLTIQDLRFQLDEGLAFFSETTDLRLTSEQVAELEHQTEGWISGLQLAAISLKHSTNIAESIHQFNGRQHHISDYLLEEVYSHQSEGMRSFLMATSILSRMNHSLCQVVTGQIDSQQHLERLEQLNLFIIPLDDQRNWYRYHHLFSDFLQRMWSRENPDKQEQTHRDAACWLESHGLDDDAMEHFIAGKHYTDAVRLIEKNLHTLVQSHSVALIKWVSALPENSFAEKPMVELFYISVLLGAENWEAAFLRIEKAPARFQALKVKLPNTEWKQAMGNIYFFSVVASYLQKDLVKTSEYFELVEQYMPEGSFFQTMRRYNYLGYDPFVDLLSYINDLHAADAFLSRWAIVMGEKTNYPFAGVLLAAYSKLLYEWDRLEEAELYASQALGRKDIQPFMRIFIHVATSASSIQQALGNPSRASKLLADLKSQIDSPDYQSFMLKIEAEQACLALRQGSVEDALVWLQGCGLAYTDEVSLHYVLEYLALARVLAANEQLEEALNLLNRLNKLLHNKDRLRDRIKVLIVQSVILQRLGRTEEALAQLEAVLQLAEPEGYVRSFVDEGSGIAELLTAYWKTRSSNPVPNTTTVSLAYVRQLLQAMQVTPEEFINEMLTEQETKVIQLIADGQTNKGIALHLNITVETVKFHIKNLYRKLDVNNRVLALQRARKLGILGS
>AP019400.1|BBI36635.1|6854502_6854691_-|hypothetical-protein
MEVVKDYLLGKILDNSNISFPKIMLLYNSRVGIIEQEKFLNFRKQIELTSISLYCELRAQHL
>AP019400.1|BBI36636.1|6854964_6855093_+|hypothetical-protein
MLMWIVLLFNYIRASVMRMVRVSLAFFVDFLHFLENLLGIGD
>AP019400.1|BBI36637.1|6855096_6856335_+|saccharopine-dehydrogenase
MGKALIIGAGGVASVAIHKCVQNSEVFEEICIASRTKSKCDDLKAKLDGGKTKITTAQVDADNVDELIALINEVKPDIVMNLALPYQDLTIMDACLATKTNYMDTANYEPEDTAKFEYKWQWDYRERFEKAGITALLGSGFDPGVTGVFSAYALKHYFDEIEYIDILDCNGGDHGYPFATNFNPEINIREVSANGRYWENGQWIETKPMEIKRGYNFAEVGEKDMYLLYHEELESLVENIPGLKRIRFFMTFGPSYLMHLKALENVGMTSIEPIEYEGKQIIPLQFLKALLPDPASLGPRTVGKTNIGCIFKGKKDGQDKTYYVYNVCDHQECYKEVGSQAISYTTGVPAMIGAAMVMTGKWNKPGVFNIEEFDPDPFMEELNKWGLPWVEDFNPVLVDALPEEAKKPELVR
>AP019400.1|BBI36638.1|6856336_6857464_+|carboxynorspermidine-decarboxylase
MRFEELPTPCYVVDEALIEKNLKILNGVMQRTGAKIVLAQKAFSMTAMYPLIGKYLNGTTASGLFEARLAHEEMGKENHVFAPAYREDEIDEIISICDHIIFNSFSQLEKYKAKALAAGRKVGLRINPECSTQEGHEIYDPCSPGSRFGVKQEEFRQELLEGVSGLHFHTLCQQNSDDLETTLNAVEEKFGQWLPQMEWVNFGGGHHITRDDYDIPKLEACIKRMQDNYGLVVYLEPGEAVALNAGYLVTSVLDIHRNGIEIAIVDTSATCHMPDVLEMPYRPPLFGSGEAGEKPHTYRLGGPTCLTGDLIGDYSFDQPLKNGDRLVFGDMAIYSMVKTNTFNGMPLPAIAVQEKDGNCRVVREFGYQDFKMRLA

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Crispr_ID: AP019400_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

AP019400_24

7007333-7007652

Unclear

Consensus_repeat	Method
CTGTAACCATACTATTTAT	CRT

6 spacers

cas3

The CRISPR arrays of AP019400_24

>merge|AP019400|24|7007333-7007652|CRT
CTGTAACCATACTATTTATGGCTAATGCGCTGAATCTCCAGGCTTGGGCCGCTGTAACCATACTATTTATAGTTAATTCTCCGATTGGCCCATCTGGGGACTGTAACCATACTATTTATGGCTAATCCGCTGAATCTCCCGACTTGGGGCGCTGTAACCATACTATTTATAGTTAATTCGCCGATTGGCCCATCTGGGGGTGCTGTAACCATACTATTTATGGCTAATGTGCTGAATCTCCAGGCTTGGCGCGCTGTAACCATACTATTTATAGTTAATTCTCCGATTGCCCATCTGGGGACTGTAACCATAAAATCATA

>AP019400|24|7|7007333-7007652|CRT
CTGTAACCATACTATTTAT	GGCTAATGCGCTGAATCTCCAGGCTTGGGCCG
CTGTAACCATACTATTTAT	AGTTAATTCTCCGATTGGCCCATCTGGGGA
CTGTAACCATACTATTTAT	GGCTAATCCGCTGAATCTCCCGACTTGGGGCG
CTGTAACCATACTATTTAT	AGTTAATTCGCCGATTGGCCCATCTGGGGGTG
CTGTAACCATACTATTTAT	GGCTAATGTGCTGAATCTCCAGGCTTGGCGCG
CTGTAACCATACTATTTAT	AGTTAATTCTCCGATTGCCCATCTGGGGA
CTGTAACCATAAAATCATA

Protein	Signature genes	Signature genes Name	Protein_function
AP019400.1\|BBI36759.1\|7010180_7011893_-\|multidrug-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182732
AP019400.1\|BBI36765.1\|7016958_7017729_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378229
AP019400.1\|BBI36752.1\|6999695_7001696_-\|hypothetical-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
AP019400.1\|BBI36760.1\|7012422_7013865_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213357
AP019400.1\|BBI36753.1\|7002023_7002746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377816
AP019400.1\|BBI36748.1\|6997925_6998132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367983
AP019400.1\|BBI36763.1\|7015835_7016036_+\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI36762.1\|7014194_7015526_-\|serine-protease	unknown	unknown	gnl\|CDD\|273938
AP019400.1\|BBI36754.1\|7002769_7003525_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378270
AP019400.1\|BBI36755.1\|7003535_7004846_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259806
AP019400.1\|BBI36758.1\|7008126_7010160_-\|multidrug-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224055
AP019400.1\|BBI36750.1\|6998796_6999276_-\|ribosomal-RNA-large-subunit-methyltransferase-H	unknown	unknown	gnl\|CDD\|376840
AP019400.1\|BBI36761.1\|7013999_7014167_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275002
AP019400.1\|BBI36749.1\|6998074_6998641_-\|hypothetical-protein	unknown	unknown	unknown
AP019400.1\|BBI36764.1\|7016080_7016881_-\|MBL-fold-hydrolase	unknown	unknown	gnl\|CDD\|293819
AP019400.1\|BBI36766.1\|7017775_7019092_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|369363
AP019400.1\|BBI36751.1\|6999275_6999488_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274807
AP019400.1\|BBI36757.1\|7005536_7007048_-\|gluconate-kinase	unknown	unknown	gnl\|CDD\|212659
AP019400.1\|BBI36756.1\|7005211_7005367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377869
AP019400.1\|BBI36767.1\|7019088_7020924_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|380161

Protein	Function_ID	Function_description	E-value
AP019400.1\|BBI36759.1\|7010180_7011893_-\|multidrug-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
AP019400.1\|BBI36752.1\|6999695_7001696_-\|hypothetical-protein	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.742e-147
AP019400.1\|BBI36753.1\|7002023_7002746_-\|hypothetical-protein	gnl\|CDD\|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	0.00301766
AP019400.1\|BBI36748.1\|6997925_6998132_+\|hypothetical-protein	gnl\|CDD\|367983	pfam04542, Sigma70_r2, Sigma-70 region 2. Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.	0.00257694
AP019400.1\|BBI36765.1\|7016958_7017729_-\|hypothetical-protein	gnl\|CDD\|378229	pfam09648, YycI, YycH protein. This domain is exclusively found in YycI proteins in the low GC content Gram positive species. These two domains share the same structural fold with domains two and three of YycH pfam07435. Both, YycH and YycI are always found in pair on the chromosome, downstream of the essential histidine kinase YycG. Additionally, both proteins share a function in regulating the YycG kinase with which they appear to form a ternary complex. Lastly, the two proteins always contain an N-terminal transmembrane helix and are localized to the periplasmic space as shown by PhoA fusion studies.	9.93134e-11
AP019400.1\|BBI36762.1\|7014194_7015526_-\|serine-protease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.49942e-72
AP019400.1\|BBI36754.1\|7002769_7003525_-\|hypothetical-protein	gnl\|CDD\|378270	pfam09843, DUF2070, Predicted membrane protein (DUF2070). This is a family of Archaeal 7-TM proteins. There are 6 closely assembled TM-regions at the N-terminus followed by a long intracellular, from residues 220-590, highly conserved region, of unknown function, terminating with one more TM-region. The short 25 residue section between TMs 5 and 6 might lie on the outer surface of the membrane and be acting as a receptor (from TMHMM).	0.00513783
AP019400.1\|BBI36755.1\|7003535_7004846_-\|hypothetical-protein	gnl\|CDD\|259806	cd03408, SPFH_like_u1, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	5.15563e-88
AP019400.1\|BBI36758.1\|7008126_7010160_-\|multidrug-ABC-transporter-permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.4301e-167
AP019400.1\|BBI36750.1\|6998796_6999276_-\|ribosomal-RNA-large-subunit-methyltransferase-H	gnl\|CDD\|376840	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase. This family of proteins are predicted to be SPOUT methyltransferases.	6.98033e-87
AP019400.1\|BBI36761.1\|7013999_7014167_-\|hypothetical-protein	gnl\|CDD\|275002	TIGR04129, conserved_hypothetical_protein, CxxH/CxxC protein, BA_5709 family. Members of this protein family occur exclusively in the Firmicutes, in at least 50 different species. Members average about 55 residues in length, and four of the five invariant or nearly invariant residues occur in motifs CxxH and CxxC. The function is unknown.	2.61685e-11
AP019400.1\|BBI36760.1\|7012422_7013865_+\|hypothetical-protein	gnl\|CDD\|213357	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family. A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	0.000372038
AP019400.1\|BBI36764.1\|7016080_7016881_-\|MBL-fold-hydrolase	gnl\|CDD\|293819	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YycJ protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	3.23493e-58
AP019400.1\|BBI36766.1\|7017775_7019092_-\|transcriptional-regulator	gnl\|CDD\|369363	pfam07435, YycH, YycH protein. This family contains the bacterial protein YycH which is approximately 450 residues long. YycH plays a role in signal transduction and is found immediately downstream of the essential histidine kinase YycG. YycG forms a two component system together with its cognate response regulator YycF. PhoA fusion studies have shown that YycH is transported across the cytoplasmic protein. It is postulated that YycH functions as an antagonist to YycG. The molecule is made up of three domains, and has a novel three-dimensional structure. The N-terminal domain features a calcium binding site and the central domain contains two conserved loop regions.	1.2437e-33
AP019400.1\|BBI36751.1\|6999275_6999488_-\|hypothetical-protein	gnl\|CDD\|274807	TIGR03833, TIGR03833, conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown. [Hypothetical proteins, Conserved].	1.4745e-32
AP019400.1\|BBI36757.1\|7005536_7007048_-\|gluconate-kinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0
AP019400.1\|BBI36756.1\|7005211_7005367_+\|hypothetical-protein	gnl\|CDD\|377869	pfam07561, DUF1540, Domain of Unknown Function (DUF1540). This family has four conserved cysteines, which is suggestive of a metal binding function.	4.4788e-09
AP019400.1\|BBI36767.1\|7019088_7020924_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|380161	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK. This model describes WalK as found in Staphylococcus aureus (sp\|Q2G2U4.1\|WALK_STAA8). A shorter version, as found in Streptococcus pneumoniae, called WalK(Spn) or VicK, is not included. WalK is part of a two-component system and works with partner protein WalR.	0

>AP019400.1|BBI36757.1|7005536_7007048_-|gluconate-kinase
MGTSRGIIGIDIGTTSTKSVIFSMEGISLGSSSVEYPLLQEQPGWAEQEPDSIVQAVVQSVKGALVQSGLNSGDIAGVGISSAMHSLIAVDAGGRPLTRSITWADSRSELEARRIREQLEGMAIYRRTGTPIHPMSPLPKLIWLRENRPDVWEKADKFVSVKEYVLYQLFGEWVVDHSVASATGLLALDKLDWDEQALAIAGIGKTKLSTLQAGTYRLQGIATHYAEQMGLETSTPFFLGASDGALANLGVGAVGAGEIAVTIGTSAAVRMMANKPLTDEQQRTFCYHVADSSYIIGGATNNGGLVLQWLREYLFAGQKSVEELLEAAAKVAPGAGGLLFLPFLTGERAPIYNAEARGTYFGVNLRHKQEHFVRSGLEGVMLAILSVAEVLVDLAGPAREIRASGGFAKSPLWLQMLADILGQEVLVPRVTEASALGAAVLAMQGLGEVNDWSHIKQWTPIVKRLEPNSHNTEIYRELFGIYQQLNGQLPEHFAAIAEFQRKH
>AP019400.1|BBI36756.1|7005211_7005367_+|hypothetical-protein
MAKDVLCEVNSCKYWAPGNACNASSIYVVNNRNKQASQSEETDCKTFESKI
>AP019400.1|BBI36755.1|7003535_7004846_-|hypothetical-protein
MAIVEVVKFDGPADVFAWKYPNSELGTWTQLIVNETQEAILFKGGKALDLFGAGRHTLSTANIPVLQNVVNLPFGGRSPFTAEVWYVNKISSLDVKWGTSTPLQLQDPKYQIIVSVRSFGQFGLQIEDSRKFLLKLIGTLPVFDKEAMIKHFRGVLMMNIKELISSYLIFKKISILEINAYISEISKHIEERIGPVFLDYGIRILNFFVDSINVPDDDPATVRLKEALAKKAEMDILGYTYQQERTFDTLEGAARNEGSGSANVMGAGIGLGMGFGIGGSVGNQMAGLTSQMNTAPSINNKACPKCQTVTTQEAQFCISCGHSYKSASTATQAAESECNACGKMFPVGAKFCLHCGDPNNACEKCGADNAQDAASCAKCGHHFGGTPCRNCGEQVDPAGKFCMNCGTSVSLKCGQCQHEVKPGQKFCLECGNKLIE
>AP019400.1|BBI36754.1|7002769_7003525_-|hypothetical-protein
MDKQRDYARIVTFIYVLALLVTLAVVFLIGLPFARTSHTWISLGTLILAETFIYGIVVHYLSNGNRASRLIPGYLALGTIAGLYFIAVVIFIVVFSLAADVSTYSYSLLHVIALGVMGIAAGLVALYYRNAESDDEKIISQVQWVSAMRSELLSIKQQLEGCKHEAEYGLVKKIAELDEKVRFSDPASHPSLVMTEQNLLQQARQLASEVSTFVKASDKDSEAQASEKLRDQIRDIRNVISTRNQQLIQLK
>AP019400.1|BBI36753.1|7002023_7002746_-|hypothetical-protein
MTIDKPKIHGAFILLGMVLFFPVGIVLLLVRFVTHYKYNHLRANDYMLVGHAFITFYAFIAFIVMLASETTSDVVALLIVFGILIGVPAIIFYIVGARRKKKMANLYNLYYHLTTAQGIDAIDRIAELTGEKPRNVTQDISYMIVSGRLTDARLDPTAQLVIMGNRTAKGQENPNPVGGPATREQIIMTDQVAAARAGAGASSQPAPKMVTCSGCGSSSKVIPGQRQDCEFCGNSLFIPS
>AP019400.1|BBI36752.1|6999695_7001696_-|hypothetical-protein
MTDFLSLGVSEGRVAILKEMGIVTPTPVQEETIPIVTAGHDVISQAQTGTGKTLAFVLPMLDKIRTDVSQVQGLIVTPTRELAIQITAEIKKLLTREDGIRVLAVYGGQDVEAQLHKLQGSMHIIIATPGRLLDHLGRGTISLAGVKMLVLDEADQMLHMGFLKEVEEILRHTPYKKQAMLFSATMPASIREMAGRILRSPQHVTVKSERVTVKAIRQWAVETSDREKQATLVKLLEETQPYLSIIFVRTKRRAAVLNEALQEMGYSSDELHGDLSQAKREQVMKRFRDARLQLLIATDIAARGLDVEGVTHVFNYDIPMDVESYIHRIGRTGRAGEKGLAITLVAPKDRRELGDIEDGIQMAMERRSEEGRPLGGGGLEGPRNSGGLGRNGTGGQSSRRSSAGQAKGRSISGSKARSGEKSYGAGSRGGDKRRGAPVAKPGAGNRSSTGEWVDRGQSRDAVNAGRPGRSVATESASDEATGFTFHDRGSDGNRGGAGSGRKAPAAGGRGGFGRSSGASGSGRSGGFGSERKSSDARGGFGRSSGAGAGFGRSDDRGASRPSAGGGSSRRNSAERASERAAERAAEFASNERKGEGRGGYGGRSSTSGGAGAGRKPEQRSGGSSFGGGRSSGPKSGGFGGSSGGFKGSKGPSGGGGRGGRGSSRSR
>AP019400.1|BBI36751.1|6999275_6999488_-|hypothetical-protein
MAGNGKIRSDVKPGLEVDIVLKQDQRTGKTTRGIVKDLLTNSPQHPHGIKVRLQDGQVGRVQNIVSGGTV
>AP019400.1|BBI36750.1|6998796_6999276_-|ribosomal-RNA-large-subunit-methyltransferase-H
MQIQIVCVGKLKEKYWVGAIEEYSKRLGSYARLDIRELPDEKTPDSMSPAEEEQVKAREGERILAALKPDAHVVALAIDGETWTSEQLAANMERQATYGGGSISFVIGGSLGLSSAVLARADKKLSFGRMTYPHQLMRVLLLEQVYRAFKINRGEPYHK
>AP019400.1|BBI36749.1|6998074_6998641_-|hypothetical-protein
MKKTIENKKELEAMEYELRISLISSFIMSFGIDDLFIEDPDLGMKKFFELWKEYRPDFDYDNDIFIGVNDVAKEIGEFKLVLNQCDDAFMEMYLYQAVSIFENMLNDFYHDELMLKYDFSGTKVNAIITSLSTIDKVDWFLQMTIGKSYVGEHGWSVIKPFIDARNFFIHYKPDLLGRLGGIAFQARA
>AP019400.1|BBI36748.1|6997925_6998132_+|hypothetical-protein
MSDEYIINLYWERSEKAIYETTLVYGRYCHKIAMNVLASKEDSDECVNDTYARAWKAIPPNRPNKSGL
>AP019400.1|BBI36758.1|7008126_7010160_-|multidrug-ABC-transporter-permease
MTAIMVSNSKRLLQYAMNYKKPIILALVLLLLAVGVELVGPFIAKRMIDTNIMGIEKPWYETKQNEKYAVAYKDGWYKREDHWSAGEEKGREVRVLQSGKSYYFVDAPGIPNRGKRTFDNGQFSVEREDGSKQLFPAAKLTKGDTYEFYKPEFRSILMLAISYIGLLLIGAVLAYWQKLLLQVSANRIVRKMRNDVFRHIQRLPVQYFDNLPAGKVVARVTNDTEAIRELYVSVLANFFSGIVYITAIIGALFLLDTKLALIALPFVPILYAWIVIYRKFAAKYNHVIRTRLSDINGMINESIQGMPIIQAFRKEKETMVEFHEMNDEYFKYQTKLLTLNSVTSHNLVNVLRSALFVAVIWLFAGDMLGTAVTVGVLYAFIDYMNRMMSPIVGIVNQLSNLEVARVSAERVFSLLNEPGVEVSDNRMTRYKGNVSFEDVSFAYKPGEDVLKNITFHAKQGETVALVGHTGSGKSSILNLLFRFYDIERGAISIDGLNISDIPKQQLRQHMGIVLQDPFLFTGTIATNVSLDDPSISRGKVEQALRDVGAYDMFMQLPGGLDEPVIEKGSTLSAGQRQLISFARALAFDPAILILDEATASIDTETEAIIQGALDVLKRGRTTFVIAHRLSTIRAADQILVLDRGQITERGNHDELMEQGGKYFAMYQLQLGVAESVA
>AP019400.1|BBI36759.1|7010180_7011893_-|multidrug-ABC-transporter-permease/ATP-binding-protein
MHWKRYSVAVFILIIVGIMEIIPPRLIGVAIDGIQQETMTPGKLTELLVFWGGLTVVAYGLTYVWLYQLFGGAFVLERLLRSRLMRHLLKMNPTFYERNRTGDLMARATNDLGAVSVTAGFGILTLIDSTLFMLTILVMMAGFISWELTLASLLPLPIMALLMQHYGKKIHDRFMKAQDAFGGLNDQVLESVSGVRVIRAFVQEEADRKRFSDSTDNVFSKNIAVAKIDALFEPTLKILVGLSYLIGLCYGAVLVSKGSITLGEMVTFNMFLGMLIWPMFALGELINIMQRGNASLDRINETLGVKEDVKDAEDPVALDVPESIAFDQVTFRYPSSTIDNLIDISLSLHRGQTLGIVGRTGSGKTTLLKQLLREYPMGKGSLTVGGVPLTELELNRLRGWIGYVPQQPILFSKTIRENIWFGTTDENGDEARLNKALELASFRKDVAFLPEGLETLVGEKGVALSGGQKQRVSIARAVIADPEILMLDDALSAVDAKTETEILEGIRTERAGKTTIITTHRLTAVQHADWIVVLDEGRITEEGTHEQLIELGGWYKEQYDRQQLASVVEA
>AP019400.1|BBI36760.1|7012422_7013865_+|hypothetical-protein
MIIAQSEDPLLHKAIFQFIFPFSLEKNCQDQMRESLVTEEYVPFRLGDRGMENRFYGPNNRISHRDMERYYLPFTNHVLFPNREDPEAFRRLTKALNIKATLHSTQLHLEFTVYSVDIVLCPFNTGFLTIRTEINPDQKVAYSQALEFGDRMRHLQDTNKLDLNTVIECNGCSYNEVEDFVFQVVTPRVLAFIDRSPMEGAHFEKLPFFMDERMFVIGFCSLPEDCDITVLHRYRAGRLDGIDLLGNARVGASHIPYMEHYCDKFEYDRWAPNTYYLTDETNFICLTREKKENSNRLANQMYGEYYYGLMLNLFHRIVLLKLSIAYSQVQLERKQEHTQDLIRDITCFSAKYYFVEIVAQTQGREIFHQLRNVYGNDELFEDVKQTLNDLYKYQETRTSKQSSYLLTILTIYTVISGIYGMNLVIEDLDGSFNWSFLMKYSAYQWIAFVVTFSGLAVAFLLVIGVLWQWGRDFIRRHNKN
>AP019400.1|BBI36761.1|7013999_7014167_-|hypothetical-protein
MYCVCREHVELAIDKFVDEHEDAPDLVSLETTTFSAWTAPEHCEWCGNKAEILVV
>AP019400.1|BBI36762.1|7014194_7015526_-|serine-protease
MTMGLFDDDFYSTRVKRRIRTGKRNNSRPFARRGQSSTFRIAFISSVASSLLVVLLFVAINGGGGERGSEARPALTGGQALVETSERIISASEKVRPAVVSIVNLTNQAMAEQDLGDNPDDGEIMNNANLGSGVIFQKTDGKAYIITNAHVIDDAAVVQAVLINGDRKAATIIGKDVVTDLAVLQVDGKGIDTVVDIGNSSKLRDGEMVIAVGNPLGFGDSLTQGIVSNKKRIIAVSLNQDGIYDWEQEVIQIDAAINQGNSGGALVDLNGKLVGINSMKVADTGVEGIGFAIPIDNAMPILKSLMEKGKVSRPYMGLYSMDLGLYLDSSKDDGINDDPNDETNKGKEEDGEFEVAAPVIPDGIKSGIIVLEAVGPSLAAGLQFNDIVVALDGKPIKSTMDLRKYLYNSKKIGESMKVTYYRDGKKQTLEVKLTEKVEQSEER
>AP019400.1|BBI36763.1|7015835_7016036_+|hypothetical-protein
MKSTAYGWHFLELASQVSDMKNDHYRQLLAISTIIELLVDKGILSQEEIKEKALQMEAELDRQLLL
>AP019400.1|BBI36764.1|7016080_7016881_-|MBL-fold-hydrolase
MGLRFTVLSSGSTGNATVVSTDLATVLVDVGFSGKKIEELLSEREISAQDLDAIFVTHEHSDHIKGLGAFARKHKLAVYANEKTWGAMKRTIGEIPEDQCNILPSDSVMEIADLRIESYAISHDAIEPVGYCFQADGGKLSLATDLGYVSDKVMRQLQNSDVMVLESNHDVNMLRMGRYPWNIKRRILGDTGHLSNEAAGEALCSLLTGSLRRVYLAHLSQEHNLMDLAKLTVNTVLEDNGNFYRKDEFALCDTYHDRPTAWDIIK
>AP019400.1|BBI36765.1|7016958_7017729_-|hypothetical-protein
MDWRRAKSVLIFSFLMLNVVLGYQLWTEYRERLNTAVDWTSLPSETLQSMRERNIKIDDNAKIPTETPFMREITYSIKHHFGKDADDRIPIVPTPETRIVYFEDELVNALGGIIPELSSYKFDPAGSREGVYFVFNRMEGKWPIFDIHLNLFYSEQKIRAYAQDIIQIKPSTGVKDQQVLPATKALATVIERNLPVGSVIKEIRLGYHGEKIFDEPEVQVSVPSWRVLLENGEEVYYVNAISAEVTTEKGDALANS
>AP019400.1|BBI36766.1|7017775_7019092_-|transcriptional-regulator
MIEKGKSGLLFLLVVLSLVQSYFLAYSKPYLEARVNTELSYVKTEPLGKGEKLENLIFPEQLVLHMGNDKHTVFYPGAQRFYELILTKLQLRTFKGMKRESLNAIDWDKIRQEDLGVELRFGRPIPFELLQRVFRIDGDFLFSRDSIDRIWIYTSKGREEVRTFFFSADGRYVYESQRADLTVGDVEGYVGFGQFWDPYTSEDGNIYIPDKPITRLMEMEVPFTRYTPDQMQDNLFFDPSSTRIIRDKTGPLYYTDNKKGLKIDQDGTWLFYTDPTAPTSGDDNNMIDNVMSAINFVNEHGGWNGQHKLVKEVEPESGNAIIRFQQYYREVPIVSSSSMNFGYMQLTLQQGLVSSYNRSLLILGSEVTNKHSRQLPGGKPLRELLNQMDPTGKNIEALFPAYKPTIGEQSVVLSPVWAVRLVSGEVVILTESTPVMLK
>AP019400.1|BBI36767.1|7019088_7020924_-|PAS-domain-containing-sensor-histidine-kinase
MRGISMFRSIQIKLIMMVLLLILIAVQLIGVYFISTMKNSLINSFTTNLNVQANLLTTLLSSDNKDAKDADSQAGTSATLSALVSTFFSNSGAEIQVLDASGRVLATSTAKASQQSNIGRKNTSLLVSRALQGVRDNEEEIIEEDNTRSKVIVKPIFSNGKIVGAIYIVASMKELYKTMEGINRTFVSATLIALGLTAILGVLLAGTITSPIKALTRQASAVAEGRFDERVPVFGQDEIGQLSVAFNDMTDRLSDALSINEEEKEKLASILSNMSDGVLATDELGRVIVTNRRAREMLGFTEPKDGMTLSEALEIDKDPIASTLKGQESSLLLNRMLDDQEEDLVFRVTLTPIRSRDKGVAGAIAVLQDVTEMEKLEQSRREFVANVSHELRTPLTTIKSYAEALDDGALDEPPLADRFVGVIRSETERMIRLVTDLLHLSRFDSRRNQLRRQKTDLTEMLEEVVDRFSFQLRQKAITVSVKVEKQLQTALLDRDGIDQVLDNLVSNAIKYTLDGGSIDISAKDNNAGQLAIAIKDTGIGIPKKDLNRIFERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGSISLDSESNVGTVVTVLLPIVPEGSETA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
AP019400_14	14.2\|2812590\|33\|AP019400\|PILER-CR	2812590-2812622	33	AP019400.1	2812380-2812412	1	0.97
AP019400_24	24.4\|7007503\|32\|AP019400\|CRT	7007503-7007534	32	AP019400.1	7007301-7007332	1	0.969
AP019400_21	21.2\|5847455\|23\|AP019400\|CRT	5847455-5847477	23	AP019400.1	1351505-1351527	2	0.913
AP019400_21	21.2\|5847455\|23\|AP019400\|CRT	5847455-5847477	23	AP019400.1	5025641-5025663	2	0.913
AP019400_21	21.2\|5847455\|23\|AP019400\|CRT	5847455-5847477	23	AP019400.1	5247215-5247237	2	0.913
AP019400_21	21.3\|5847507\|35\|AP019400\|CRT	5847507-5847541	35	AP019400.1	5847339-5847373	2	0.943
AP019400_21	21.6\|5847675\|23\|AP019400\|CRT	5847675-5847697	23	AP019400.1	1351836-1351858	2	0.913
AP019400_21	21.7\|5847727\|23\|AP019400\|CRT	5847727-5847749	23	AP019400.1	5247215-5247237	2	0.913
AP019400_21	21.8\|5847779\|23\|AP019400\|CRT	5847779-5847801	23	AP019400.1	2334817-2334839	2	0.913
AP019400_23	23.2\|6841580\|19\|AP019400\|CRT	6841580-6841598	19	AP019400.1	544782-544800	2	0.895
AP019400_23	23.2\|6841580\|19\|AP019400\|CRT	6841580-6841598	19	AP019400.1	544935-544953	2	0.895
AP019400_23	23.4\|6841682\|19\|AP019400\|CRT	6841682-6841700	19	AP019400.1	1317956-1317974	2	0.895
AP019400_23	23.4\|6841682\|19\|AP019400\|CRT	6841682-6841700	19	AP019400.1	1318007-1318025	2	0.895
AP019400_23	23.4\|6841682\|19\|AP019400\|CRT	6841682-6841700	19	AP019400.1	1318058-1318076	2	0.895
AP019400_23	23.4\|6841682\|19\|AP019400\|CRT	6841682-6841700	19	AP019400.1	1318109-1318127	2	0.895
AP019400_23	23.4\|6841682\|19\|AP019400\|CRT	6841682-6841700	19	AP019400.1	1318160-1318178	2	0.895
AP019400_23	23.6\|6841784\|19\|AP019400\|CRT	6841784-6841802	19	AP019400.1	544782-544800	2	0.895
AP019400_23	23.6\|6841784\|19\|AP019400\|CRT	6841784-6841802	19	AP019400.1	544935-544953	2	0.895

1. spacer 14.2|2812590|33|AP019400|PILER-CR matches to position: 2812380-2812412, mismatch: 1, identity: 0.97

aggaccccgtaaggcatgtttgtagtggaggta	CRISPR spacer
aggatcccgtaaggcatgtttgtagtggaggta	Protospacer
****.****************************

2. spacer 24.4|7007503|32|AP019400|CRT matches to position: 7007301-7007332, mismatch: 1, identity: 0.969

agttaattcgccgattggcccatctgggggtg	CRISPR spacer
agttaattctccgattggcccatctgggggtg	Protospacer
********* **********************

3. spacer 21.2|5847455|23|AP019400|CRT matches to position: 1351505-1351527, mismatch: 2, identity: 0.913

ttatcgtacatctgcctctaatc	CRISPR spacer
ttatcgtacatcttcctctattc	Protospacer
************* ****** **

4. spacer 21.2|5847455|23|AP019400|CRT matches to position: 5025641-5025663, mismatch: 2, identity: 0.913

ttatcgtacatctgcctctaatc	CRISPR spacer
ttatcgtacatctgcctccattc	Protospacer
******************.* **

5. spacer 21.2|5847455|23|AP019400|CRT matches to position: 5247215-5247237, mismatch: 2, identity: 0.913

ttatcgtacatctgcctctaatc	CRISPR spacer
ttttcgtacatctacctctaatc	Protospacer
** **********.*********

6. spacer 21.3|5847507|35|AP019400|CRT matches to position: 5847339-5847373, mismatch: 2, identity: 0.943

atatcggacatctacctctgattgcgtctctcaca	CRISPR spacer
atattgtacatctacctctgattgcgtctctcaca	Protospacer
****.* ****************************

7. spacer 21.6|5847675|23|AP019400|CRT matches to position: 1351836-1351858, mismatch: 2, identity: 0.913

ttatcgtacatctgcttctgatc	CRISPR spacer
ttatcgtacatctgcatccgatc	Protospacer
*************** **.****

8. spacer 21.7|5847727|23|AP019400|CRT matches to position: 5247215-5247237, mismatch: 2, identity: 0.913

ttatcgtacatctaactctaatc	CRISPR spacer
ttttcgtacatctacctctaatc	Protospacer
** *********** ********

9. spacer 21.8|5847779|23|AP019400|CRT matches to position: 2334817-2334839, mismatch: 2, identity: 0.913

taatcgtacatctaactctaatc	CRISPR spacer
taatcgtacatctcactccaatc	Protospacer
************* ****.****

10. spacer 23.2|6841580|19|AP019400|CRT matches to position: 544782-544800, mismatch: 2, identity: 0.895

tcacccctgccagcgagta	CRISPR spacer
tcgcccccgccagcgagta	Protospacer
**.****.***********

11. spacer 23.2|6841580|19|AP019400|CRT matches to position: 544935-544953, mismatch: 2, identity: 0.895

tcacccctgccagcgagta	CRISPR spacer
tcgcccccgccagcgagta	Protospacer
**.****.***********

12. spacer 23.4|6841682|19|AP019400|CRT matches to position: 1317956-1317974, mismatch: 2, identity: 0.895

tcaccccagccagcgcaaa	CRISPR spacer
tcaccccagccagcccgaa	Protospacer
************** *.**

13. spacer 23.4|6841682|19|AP019400|CRT matches to position: 1318007-1318025, mismatch: 2, identity: 0.895

tcaccccagccagcgcaaa	CRISPR spacer
tcaccccagccagcccgaa	Protospacer
************** *.**

14. spacer 23.4|6841682|19|AP019400|CRT matches to position: 1318058-1318076, mismatch: 2, identity: 0.895

tcaccccagccagcgcaaa	CRISPR spacer
tcaccccagccagcccgaa	Protospacer
************** *.**

15. spacer 23.4|6841682|19|AP019400|CRT matches to position: 1318109-1318127, mismatch: 2, identity: 0.895

tcaccccagccagcgcaaa	CRISPR spacer
tcaccccagccagcccgaa	Protospacer
************** *.**

16. spacer 23.4|6841682|19|AP019400|CRT matches to position: 1318160-1318178, mismatch: 2, identity: 0.895

tcaccccagccagcgcaaa	CRISPR spacer
tcaccccagccagcccgaa	Protospacer
************** *.**

17. spacer 23.6|6841784|19|AP019400|CRT matches to position: 544782-544800, mismatch: 2, identity: 0.895

tcacccctgccagcgagta	CRISPR spacer
tcgcccccgccagcgagta	Protospacer
**.****.***********

18. spacer 23.6|6841784|19|AP019400|CRT matches to position: 544935-544953, mismatch: 2, identity: 0.895

tcacccctgccagcgagta	CRISPR spacer
tcgcccccgccagcgagta	Protospacer
**.****.***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
AP019400_12	12.2\|2531708\|30\|AP019400\|CRISPRCasFinder	2531708-2531737	30	MG945503	UNVERIFIED: Microviridae sp. isolate 1718-1801, complete genome	4581-4610	4	0.867
AP019400_2	2.1\|513765\|26\|AP019400\|CRISPRCasFinder	513765-513790	26	NZ_CP033895	Serratia liquefaciens strain FG3 plasmid p2-125, complete sequence	54816-54841	5	0.808
AP019400_2	2.1\|513765\|26\|AP019400\|CRISPRCasFinder	513765-513790	26	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	580847-580872	5	0.808
AP019400_20	20.1\|5492193\|27\|AP019400\|CRISPRCasFinder	5492193-5492219	27	NZ_CP017300	Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence	33233-33259	5	0.815
AP019400_20	20.1\|5492193\|27\|AP019400\|CRISPRCasFinder	5492193-5492219	27	MH572276	Microviridae sp. isolate SD_SC_4, complete genome	248-274	5	0.815
AP019400_1	1.1\|334707\|28\|AP019400\|CRISPRCasFinder	334707-334734	28	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	202346-202373	6	0.786
AP019400_1	1.1\|334707\|28\|AP019400\|CRISPRCasFinder	334707-334734	28	MN693858	Marine virus AFVG_250M1106, complete genome	26535-26562	6	0.786
AP019400_8	8.11\|2011305\|30\|AP019400\|CRT	2011305-2011334	30	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1454303-1454332	6	0.8
AP019400_12	12.2\|2531708\|30\|AP019400\|CRISPRCasFinder	2531708-2531737	30	AP018399	Xanthomonas phage XacN1 DNA, complete genome	128750-128779	6	0.8
AP019400_12	12.2\|2531708\|30\|AP019400\|CRISPRCasFinder	2531708-2531737	30	NC_030925	Bacillus phage Shbh1, complete genome	126119-126148	6	0.8
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NC_021321	Halovirus HRTV-8, complete genome	64323-64352	6	0.8
AP019400_8	8.6\|2011045\|30\|AP019400\|CRT	2011045-2011074	30	NC_002147	Agrobacterium tumefaciens MAFF301001 plasmid pTi-SAKURA, complete sequence	80430-80459	7	0.767
AP019400_8	8.6\|2011045\|30\|AP019400\|CRT	2011045-2011074	30	NZ_MK439386	Agrobacterium tumefaciens strain T37 plasmid pTiT37, complete sequence	113275-113304	7	0.767
AP019400_8	8.6\|2011045\|30\|AP019400\|CRT	2011045-2011074	30	NZ_KY000041	Agrobacterium tumefaciens strain CFBP296 plasmid pTi_CFBP296, complete sequence	135062-135091	7	0.767
AP019400_8	8.6\|2011045\|30\|AP019400\|CRT	2011045-2011074	30	NZ_KY000044	Agrobacterium fabrum strain CFBP1933 plasmid pTi_CFBP1933, complete sequence	69623-69652	7	0.767
AP019400_8	8.6\|2011045\|30\|AP019400\|CRT	2011045-2011074	30	NZ_KY000057	Agrobacterium fabrum strain CFBP5505 plasmid pTi_CFBP5505, complete sequence	112798-112827	7	0.767
AP019400_8	8.9\|2011201\|30\|AP019400\|CRT	2011201-2011230	30	NC_002147	Agrobacterium tumefaciens MAFF301001 plasmid pTi-SAKURA, complete sequence	80430-80459	7	0.767
AP019400_8	8.9\|2011201\|30\|AP019400\|CRT	2011201-2011230	30	NZ_MK439386	Agrobacterium tumefaciens strain T37 plasmid pTiT37, complete sequence	113275-113304	7	0.767
AP019400_8	8.9\|2011201\|30\|AP019400\|CRT	2011201-2011230	30	NZ_KY000041	Agrobacterium tumefaciens strain CFBP296 plasmid pTi_CFBP296, complete sequence	135062-135091	7	0.767
AP019400_8	8.9\|2011201\|30\|AP019400\|CRT	2011201-2011230	30	NZ_KY000044	Agrobacterium fabrum strain CFBP1933 plasmid pTi_CFBP1933, complete sequence	69623-69652	7	0.767
AP019400_8	8.9\|2011201\|30\|AP019400\|CRT	2011201-2011230	30	NZ_KY000057	Agrobacterium fabrum strain CFBP5505 plasmid pTi_CFBP5505, complete sequence	112798-112827	7	0.767
AP019400_12	12.2\|2531708\|30\|AP019400\|CRISPRCasFinder	2531708-2531737	30	MH616764	Inoviridae sp. isolate ctgi4, complete genome	6276-6305	7	0.767
AP019400_12	12.2\|2531708\|30\|AP019400\|CRISPRCasFinder	2531708-2531737	30	MH067967	Arthrobacter sp. strain ANT_H19B plasmid pA19BH1, complete sequence	51306-51335	7	0.767
AP019400_12	12.2\|2531708\|30\|AP019400\|CRISPRCasFinder	2531708-2531737	30	MN693880	Marine virus AFVG_250M607, complete genome	6867-6896	7	0.767
AP019400_14	14.1\|2812538\|33\|AP019400\|PILER-CR	2812538-2812570	33	NC_013207	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02, complete sequence	35012-35044	7	0.788
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NC_008574	Ralstonia phage RSM1, complete genome	1349-1378	7	0.767
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	AB259123	Ralstonia phage RSM1 DNA, complete genome	1349-1378	7	0.767
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	AB937974	Ralstonia phage RS603 DNA, complete genome	1024-1053	7	0.767
AP019400_24	24.1\|7007352\|32\|AP019400\|CRT	7007352-7007383	32	NC_042115	Pseudomonas phage vB_PaeS_PAO1_Ab19, complete genome	5647-5678	7	0.781
AP019400_8	8.3\|2010889\|30\|AP019400\|CRT	2010889-2010918	30	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	228464-228493	8	0.733
AP019400_8	8.3\|2010889\|30\|AP019400\|CRT	2010889-2010918	30	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	6874-6903	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP040051	Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence	23440-23469	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	MK531540	Acinetobacter baumannii strain MC75 plasmid pMC75.1, complete sequence	139780-139809	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP009293	Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence	140056-140085	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP012007	Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence	13565-13594	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	MK531536	Acinetobacter baumannii strain MC1 plasmid pMC1.1, complete sequence	174003-174032	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	CP040054	Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence	9738-9767	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP050386	Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence	42948-42977	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	1182201-1182230	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP020596	Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence	83615-83644	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP012005	Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence	13564-13593	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	KX196154	Shewanella phage SFCi1, complete genome	34074-34103	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	MF399199	Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence	11235-11264	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_AP014650	Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence	135653-135682	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP027531	Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence	117948-117977	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP050416	Acinetobacter baumannii strain PM193665 plasmid pPM193665_1, complete sequence	85046-85075	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP050426	Acinetobacter baumannii strain PM194188 plasmid pPM194122_1, complete sequence	85046-85075	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP050433	Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence	161055-161084	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	69616-69645	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	LT605060	Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2	83897-83926	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_KU744946	Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence	11235-11264	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP040260	Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence	7905-7934	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	902680-902709	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_KT779035	Acinetobacter baumannii strain D4 plasmid pD4, complete sequence	11235-11264	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP022285	Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence	14617-14646	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_MK323043	Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence	46158-46187	8	0.733
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	CP033562	Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence	101729-101758	8	0.733
AP019400_8	8.4\|2010941\|30\|AP019400\|CRT	2010941-2010970	30	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	141903-141932	9	0.7
AP019400_8	8.5\|2010993\|30\|AP019400\|CRT	2010993-2011022	30	MN693419	Marine virus AFVG_25M178, complete genome	31848-31877	9	0.7
AP019400_8	8.13\|2011410\|30\|AP019400\|CRT	2011410-2011439	30	NZ_CP053366	Klebsiella pneumoniae strain BA2275 plasmid p2, complete sequence	13711-13740	9	0.7
AP019400_8	8.13\|2011410\|30\|AP019400\|CRT	2011410-2011439	30	MK422455	Klebsiella phage ST340-VIM1phi10.1, complete genome	3371-3400	9	0.7
AP019400_8	8.13\|2011410\|30\|AP019400\|CRT	2011410-2011439	30	MK433579	Klebsiella phage ST11-OXA48phi15.1, complete genome	32738-32767	9	0.7
AP019400_8	8.13\|2011410\|30\|AP019400\|CRT	2011410-2011439	30	MK416019	Klebsiella phage ST11-VIM1phi8.3, complete genome	35636-35665	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_KX833209	Salmonella enterica subsp. enterica serovar Typhi strain Ty004 plasmid pTy004_01, complete sequence	47494-47523	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029647	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence	106578-106607	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	703601-703630	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	45374-45403	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029859	Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence	9246-9275	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029847	Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence	40714-40743	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029916	Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence	85531-85560	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029893	Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence	6034-6063	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029876	Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence	104333-104362	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029884	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence	87959-87988	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029849	Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence	92162-92191	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029929	Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence	49351-49380	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029865	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence	63457-63486	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	8634-8663	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029891	Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence	101105-101134	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029898	Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence	103665-103694	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029921	Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence	76270-76299	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP017724	Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 plasmid pSARB26_01, complete sequence	91347-91376	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_LT904880	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3	18523-18552	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	56633-56662	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	26336-26365	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029961	Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence	101065-101094	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029857	Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence	41875-41904	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP011655	Citrobacter freundii strain CAV1741 plasmid pCAV1741-110, complete sequence	30024-30053	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029905	Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence	54906-54935	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029851	Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence	68385-68414	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP051133	Enterobacter hormaechei strain AMS-38 plasmid pAMS-38a, complete sequence	80810-80839	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	41646-41675	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029889	Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence	42146-42175	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029951	Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence	71464-71493	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029867	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence	57436-57465	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NZ_CP029901	Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence	57079-57108	9	0.7
AP019400_17	17.4\|4479871\|30\|AP019400\|CRT	4479871-4479900	30	NC_049470	Arthrobacter phage TripleJ, complete genome	3833-3862	9	0.7

1. spacer 12.2|2531708|30|AP019400|CRISPRCasFinder matches to MG945503 (UNVERIFIED: Microviridae sp. isolate 1718-1801, complete genome) position: , mismatch: 4, identity: 0.867

cagaaccaacggcaacaccagaaccaacgg	CRISPR spacer
cagaaccaacagcagcaccagaaccaccag	Protospacer
**********.***.*********** *.*

2. spacer 2.1|513765|26|AP019400|CRISPRCasFinder matches to NZ_CP033895 (Serratia liquefaciens strain FG3 plasmid p2-125, complete sequence) position: , mismatch: 5, identity: 0.808

cgaagggttgctggaagaatgagcga	CRISPR spacer
ccgccggttgctggaagaaggagcga	Protospacer
* .  ************** ******

3. spacer 2.1|513765|26|AP019400|CRISPRCasFinder matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 5, identity: 0.808

cgaagggttgctggaagaatgagcga	CRISPR spacer
ctgtgctttgctggaagaatgagcga	Protospacer
* . *  *******************

4. spacer 20.1|5492193|27|AP019400|CRISPRCasFinder matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 5, identity: 0.815

ttctcttcatttctgcgcggcttctca	CRISPR spacer
ctctctccatttctgcgcggcgtctgc	Protospacer
.*****.************** ***

5. spacer 20.1|5492193|27|AP019400|CRISPRCasFinder matches to MH572276 (Microviridae sp. isolate SD_SC_4, complete genome) position: , mismatch: 5, identity: 0.815

ttctcttcatttctgcgcggcttctca	CRISPR spacer
tcttcttcgttcctgcgcggcttctct	Protospacer
*..*****.**.**************

6. spacer 1.1|334707|28|AP019400|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 6, identity: 0.786

ccgccgccactggctttttaaccataga	CRISPR spacer
ttgccgccaatggcttttaaaccattaa	Protospacer
..******* ******** ****** .*

7. spacer 1.1|334707|28|AP019400|CRISPRCasFinder matches to MN693858 (Marine virus AFVG_250M1106, complete genome) position: , mismatch: 6, identity: 0.786

ccgccgccactggctttttaaccataga	CRISPR spacer
ccgccgccactcgctttttaagccccgc	Protospacer
*********** ********* * . *

8. spacer 8.11|2011305|30|AP019400|CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 6, identity: 0.8

gtccccccgcgcaactcctgctcaaacata-	CRISPR spacer
agaccctctcgcaactcctgctcaaa-atat	Protospacer
.  ***.* ***************** ***

9. spacer 12.2|2531708|30|AP019400|CRISPRCasFinder matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 6, identity: 0.8

cagaaccaacggcaacaccagaaccaacgg	CRISPR spacer
taccaccaacgccaacaccagcaccaacag	Protospacer
.*  ******* ********* ******.*

10. spacer 12.2|2531708|30|AP019400|CRISPRCasFinder matches to NC_030925 (Bacillus phage Shbh1, complete genome) position: , mismatch: 6, identity: 0.8

cagaaccaacggcaacaccagaaccaacgg	CRISPR spacer
caactccaacgccaacaccagcaccaacgc	Protospacer
**.  ****** ********* *******

11. spacer 17.4|4479871|30|AP019400|CRT matches to NC_021321 (Halovirus HRTV-8, complete genome) position: , mismatch: 6, identity: 0.8

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggtgctgtcggtcgtgctggtggtcgtac	Protospacer
* *. *** ******* *********** *

12. spacer 8.6|2011045|30|AP019400|CRT matches to NC_002147 (Agrobacterium tumefaciens MAFF301001 plasmid pTi-SAKURA, complete sequence) position: , mismatch: 7, identity: 0.767

gagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
 * ***********.****** ****..*

13. spacer 8.6|2011045|30|AP019400|CRT matches to NZ_MK439386 (Agrobacterium tumefaciens strain T37 plasmid pTiT37, complete sequence) position: , mismatch: 7, identity: 0.767

gagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
 * ***********.****** ****..*

14. spacer 8.6|2011045|30|AP019400|CRT matches to NZ_KY000041 (Agrobacterium tumefaciens strain CFBP296 plasmid pTi_CFBP296, complete sequence) position: , mismatch: 7, identity: 0.767

gagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
 * ***********.****** ****..*

15. spacer 8.6|2011045|30|AP019400|CRT matches to NZ_KY000044 (Agrobacterium fabrum strain CFBP1933 plasmid pTi_CFBP1933, complete sequence) position: , mismatch: 7, identity: 0.767

gagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
 * ***********.****** ****..*

16. spacer 8.6|2011045|30|AP019400|CRT matches to NZ_KY000057 (Agrobacterium fabrum strain CFBP5505 plasmid pTi_CFBP5505, complete sequence) position: , mismatch: 7, identity: 0.767

gagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
 * ***********.****** ****..*

17. spacer 8.9|2011201|30|AP019400|CRT matches to NC_002147 (Agrobacterium tumefaciens MAFF301001 plasmid pTi-SAKURA, complete sequence) position: , mismatch: 7, identity: 0.767

tagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
.* ***********.****** ****..*

18. spacer 8.9|2011201|30|AP019400|CRT matches to NZ_MK439386 (Agrobacterium tumefaciens strain T37 plasmid pTiT37, complete sequence) position: , mismatch: 7, identity: 0.767

tagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
.* ***********.****** ****..*

19. spacer 8.9|2011201|30|AP019400|CRT matches to NZ_KY000041 (Agrobacterium tumefaciens strain CFBP296 plasmid pTi_CFBP296, complete sequence) position: , mismatch: 7, identity: 0.767

tagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
.* ***********.****** ****..*

20. spacer 8.9|2011201|30|AP019400|CRT matches to NZ_KY000044 (Agrobacterium fabrum strain CFBP1933 plasmid pTi_CFBP1933, complete sequence) position: , mismatch: 7, identity: 0.767

tagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
.* ***********.****** ****..*

21. spacer 8.9|2011201|30|AP019400|CRT matches to NZ_KY000057 (Agrobacterium fabrum strain CFBP5505 plasmid pTi_CFBP5505, complete sequence) position: , mismatch: 7, identity: 0.767

tagtcgcggcgtaactctgtctcaaacgtg	CRISPR spacer
cactcgcggcgtaattctgtcgcaaatatc	Protospacer
.* ***********.****** ****..*

22. spacer 12.2|2531708|30|AP019400|CRISPRCasFinder matches to MH616764 (Inoviridae sp. isolate ctgi4, complete genome) position: , mismatch: 7, identity: 0.767

cagaaccaacggcaacaccagaaccaacgg	CRISPR spacer
tggaaccaaccgcaacaccagaagcagaag	Protospacer
..******** ************ **. .*

23. spacer 12.2|2531708|30|AP019400|CRISPRCasFinder matches to MH067967 (Arthrobacter sp. strain ANT_H19B plasmid pA19BH1, complete sequence) position: , mismatch: 7, identity: 0.767

cagaaccaacggcaacaccagaaccaacgg	CRISPR spacer
cgaaaccatcggcaacaccaaaaccaccct	Protospacer
*..***** ***********.***** *

24. spacer 12.2|2531708|30|AP019400|CRISPRCasFinder matches to MN693880 (Marine virus AFVG_250M607, complete genome) position: , mismatch: 7, identity: 0.767

cagaaccaacggcaacaccagaaccaacgg	CRISPR spacer
cagaaccaccagcaacaccagaaactccat	Protospacer
******** *.************ *  *.

25. spacer 14.1|2812538|33|AP019400|PILER-CR matches to NC_013207 (Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02, complete sequence) position: , mismatch: 7, identity: 0.788

tggtttgtgaaagggcgcgatagtgaggagttg	CRISPR spacer
gagtttgtgaaagggcgcgataaggaggattct	Protospacer
 .********************. ***** *.

26. spacer 17.4|4479871|30|AP019400|CRT matches to NC_008574 (Ralstonia phage RSM1, complete genome) position: , mismatch: 7, identity: 0.767

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tgctgctggcggtggttctggtggttgtcc	Protospacer
*  . ******** ***********.**.*

27. spacer 17.4|4479871|30|AP019400|CRT matches to AB259123 (Ralstonia phage RSM1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tgctgctggcggtggttctggtggttgtcc	Protospacer
*  . ******** ***********.**.*

28. spacer 17.4|4479871|30|AP019400|CRT matches to AB937974 (Ralstonia phage RS603 DNA, complete genome) position: , mismatch: 7, identity: 0.767

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tgctgctggcggtggttctggtggttgtcc	Protospacer
*  . ******** ***********.**.*

29. spacer 24.1|7007352|32|AP019400|CRT matches to NC_042115 (Pseudomonas phage vB_PaeS_PAO1_Ab19, complete genome) position: , mismatch: 7, identity: 0.781

ggctaatgcgctgaatctccaggcttgggccg	CRISPR spacer
cgcacatgcgctgaatctccgggcgtgggaag	Protospacer
 **  ***************.*** ****  *

30. spacer 8.3|2010889|30|AP019400|CRT matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 8, identity: 0.733

gagtcgccgcgtaactccacctcaagcata	CRISPR spacer
cgctcgccgcggaactccaccgcaaggagt	Protospacer
 . ******** ********* **** *

31. spacer 8.3|2010889|30|AP019400|CRT matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 8, identity: 0.733

gagtcgccgcgtaactccacctcaagcata	CRISPR spacer
cgctcgccgcggaactccaccgcaaggagt	Protospacer
 . ******** ********* **** *

32. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP040051 (Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

33. spacer 17.4|4479871|30|AP019400|CRT matches to MK531540 (Acinetobacter baumannii strain MC75 plasmid pMC75.1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

34. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP009293 (Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
gcaatctggcggtcagtctggtggtcgcga	Protospacer
 *. **********. ***********.

35. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP012007 (Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

36. spacer 17.4|4479871|30|AP019400|CRT matches to MK531536 (Acinetobacter baumannii strain MC1 plasmid pMC1.1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

37. spacer 17.4|4479871|30|AP019400|CRT matches to CP040054 (Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

38. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP050386 (Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

39. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cctatgtggctgtcgttctggtggtcggcg	Protospacer
.*  * **** **************** .

40. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP020596 (Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

41. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP012005 (Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

42. spacer 17.4|4479871|30|AP019400|CRT matches to KX196154 (Shewanella phage SFCi1, complete genome) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
ctgaattggcgggcgttcttgtggtcgttt	Protospacer
..*  .****** ****** *********.

43. spacer 17.4|4479871|30|AP019400|CRT matches to MF399199 (Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

44. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_AP014650 (Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

45. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP027531 (Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

46. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP050416 (Acinetobacter baumannii strain PM193665 plasmid pPM193665_1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

47. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP050426 (Acinetobacter baumannii strain PM194188 plasmid pPM194122_1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

48. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP050433 (Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

49. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
ccgagtcggcggtggttctggtggtcgtaa	Protospacer
.**  ..****** **************

50. spacer 17.4|4479871|30|AP019400|CRT matches to LT605060 (Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

51. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_KU744946 (Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

52. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP040260 (Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

53. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tgcgccaggcggtcgtgctggtggtcgtct	Protospacer
*   .* ********* ***********..

54. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_KT779035 (Acinetobacter baumannii strain D4 plasmid pD4, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

55. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP022285 (Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

56. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_MK323043 (Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

57. spacer 17.4|4479871|30|AP019400|CRT matches to CP033562 (Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
tggctctggcggtggttccggtggtaacgg	Protospacer
* *********** ****.****** ..

58. spacer 8.4|2010941|30|AP019400|CRT matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gtccccccgcgcaactccggctcaaacatg	CRISPR spacer
cggcccccgcgcacctccggctcgaagggc	Protospacer
   ********** *********.** .

59. spacer 8.5|2010993|30|AP019400|CRT matches to MN693419 (Marine virus AFVG_25M178, complete genome) position: , mismatch: 9, identity: 0.7

gagtcgccgcgtaactctgtctcgagcgta	CRISPR spacer
atacgggcgcgtaactctgtgtcgagcgct	Protospacer
. .. * ************* *******.

60. spacer 8.13|2011410|30|AP019400|CRT matches to NZ_CP053366 (Klebsiella pneumoniae strain BA2275 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.7

gccaccccgcttaactctgcctcgagcgta	CRISPR spacer
atagagcaccttaactctgccacgagcgta	Protospacer
.. .  *  ************ ********

61. spacer 8.13|2011410|30|AP019400|CRT matches to MK422455 (Klebsiella phage ST340-VIM1phi10.1, complete genome) position: , mismatch: 9, identity: 0.7

gccaccccgcttaactctgcctcgagcgta	CRISPR spacer
atagagcaccttaactctgccacgagcgta	Protospacer
.. .  *  ************ ********

62. spacer 8.13|2011410|30|AP019400|CRT matches to MK433579 (Klebsiella phage ST11-OXA48phi15.1, complete genome) position: , mismatch: 9, identity: 0.7

gccaccccgcttaactctgcctcgagcgta	CRISPR spacer
atagagcaccttaactctgccacgagcgta	Protospacer
.. .  *  ************ ********

63. spacer 8.13|2011410|30|AP019400|CRT matches to MK416019 (Klebsiella phage ST11-VIM1phi8.3, complete genome) position: , mismatch: 9, identity: 0.7

gccaccccgcttaactctgcctcgagcgta	CRISPR spacer
atagagcaccttaactctgccacgagcgta	Protospacer
.. .  *  ************ ********

64. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_KX833209 (Salmonella enterica subsp. enterica serovar Typhi strain Ty004 plasmid pTy004_01, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

65. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

66. spacer 17.4|4479871|30|AP019400|CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cgcctctggcggtcgttctgatgctctcag	Protospacer
.  *****************.** ** .

67. spacer 17.4|4479871|30|AP019400|CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

68. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

69. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

70. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

71. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

72. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

73. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

74. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

75. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

76. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

77. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

78. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

79. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

80. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

81. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP017724 (Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 strain SGSC 2518 isolate SARB61 plasmid pSARB26_01, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

82. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

83. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

84. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

85. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

86. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

87. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP011655 (Citrobacter freundii strain CAV1741 plasmid pCAV1741-110, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

88. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

89. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

90. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP051133 (Enterobacter hormaechei strain AMS-38 plasmid pAMS-38a, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

91. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

92. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

93. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

94. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

95. spacer 17.4|4479871|30|AP019400|CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cagctcaggcggtcgatctggtggtgcagg	Protospacer
. **** ******** *********

96. spacer 17.4|4479871|30|AP019400|CRT matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 9, identity: 0.7

tcgctctggcggtcgttctggtggtcgttc	CRISPR spacer
cgggcgcatcggccgttctggtggtcgttc	Protospacer
. * . .. ***.*****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1044843 : 1058270

Bacillus_phage(35.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI31447.1\|1044843_1045413_-	hypothetical protein	A0A2H4JA43	uncultured_Caudovirales_phage	3.0e-23	35.4
BBI31448.1\|1045500_1045905_-	HTH-type transcriptional regulator Xre	A0A1L2JY18	Aeribacillus_phage	3.6e-15	40.7
BBI31449.1\|1046169_1046739_+	hypothetical protein	NA	NA	NA	NA
BBI31450.1\|1046968_1047682_+	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	1.7e-28	35.3
BBI31451.1\|1047696_1047888_+	hypothetical protein	NA	NA	NA	NA
BBI31452.1\|1047889_1049338_+	hypothetical protein	A0A0N7AEC6	Bacillus_phage	8.5e-83	38.1
BBI31453.1\|1049353_1049761_+	hypothetical protein	A0A2H4J032	uncultured_Caudovirales_phage	6.1e-39	57.3
BBI31454.1\|1049780_1050185_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	1.3e-28	45.7
BBI31455.1\|1050356_1051823_+	hypothetical protein	NA	NA	NA	NA
BBI31456.1\|1051857_1052478_+	hypothetical protein	A0A0N7ACF7	Bacillus_phage	1.4e-50	52.1
BBI31457.1\|1052474_1053440_+	hypothetical protein	A0A0N6W8H4	Bacillus_phage	1.5e-83	49.2
BBI31458.1\|1053432_1053852_+	hypothetical protein	A0A0N7ACD3	Bacillus_phage	6.3e-07	29.2
BBI31459.1\|1053844_1054294_+	phage-like element PBSX protein XkdS	A0A0N7ACH4	Bacillus_phage	7.5e-30	45.8
BBI31460.1\|1054293_1055406_+	phage-like element PBSX protein XkdT	S6AVU3	Thermus_phage	3.5e-44	34.9
BBI31461.1\|1055440_1055980_+	hypothetical protein	S6BFJ0	Thermus_phage	3.8e-28	41.2
BBI31462.1\|1055992_1057390_+	hypothetical protein	NA	NA	NA	NA
BBI31463.1\|1057409_1057709_+	hypothetical protein	S6C455	Thermus_phage	5.0e-22	54.1
BBI31464.1\|1058009_1058270_+	phage protein	A0A0A7RWP8	Clostridium_phage	1.8e-07	37.5

DBSCAN-SWA_2

1499255 : 1506319

Bacillus_phage(33.33%)

integrase,protease

attL 1503371:1503389|attR 1505010:1505028

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI31816.1\|1499255_1500206_+	DNA ligase	A0A1P8CWY5	Bacillus_phage	8.7e-20	26.5
BBI31817.1\|1500255_1501143_-	non-homologous end joining protein Ku	A0A218M9C0	Mycobacterium_phage	2.3e-38	33.6
BBI31818.1\|1501267_1501447_+	hypothetical protein	NA	NA	NA	NA
BBI31819.1\|1501443_1501629_+	hypothetical protein	NA	NA	NA	NA
BBI31820.1\|1501918_1502479_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	7.2e-06	35.4
BBI31821.1\|1502529_1502886_-	membrane protein	S5MNN8	Brevibacillus_phage	1.5e-20	77.2
BBI31822.1\|1503217_1503385_+	hypothetical protein	NA	NA	NA	NA
1503371:1503389	attL	NA	NA	NA	NA
BBI31823.1\|1503668_1504508_-\|integrase	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	2.0e-07	25.7
BBI31824.1\|1504615_1504936_-	hypothetical protein	NA	NA	NA	NA
BBI31825.1\|1505115_1505283_+	hypothetical protein	NA	NA	NA	NA
1505010:1505028	attR	NA	NA	NA	NA
BBI31826.1\|1505560_1506319_-\|protease	serine protease	U5Q0C0	Bacillus_phage	2.0e-35	62.2

DBSCAN-SWA_3

1740227 : 1778528

Brevibacillus_phage(47.06%)

integrase,portal,terminase,tail

attL 1737309:1737322|attR 1757800:1757813

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1737309:1737322	attL	NA	NA	NA	NA
BBI32006.1\|1740227_1741703_-\|integrase	integrase	A0A2P1JU08	Anoxybacillus_phage	1.4e-56	32.6
BBI32007.1\|1741715_1742234_-	hypothetical protein	NA	NA	NA	NA
BBI32008.1\|1742330_1742687_-	hypothetical protein	A8ATJ9	Listeria_phage	2.8e-11	48.5
BBI32009.1\|1742837_1743056_+	hypothetical protein	NA	NA	NA	NA
BBI32010.1\|1743325_1743577_+	hypothetical protein	S5MNZ7	Brevibacillus_phage	4.8e-10	47.4
BBI32011.1\|1743579_1743906_+	hypothetical protein	NA	NA	NA	NA
BBI32012.1\|1743902_1744178_+	hypothetical protein	NA	NA	NA	NA
BBI32013.1\|1744191_1744617_+	hypothetical protein	NA	NA	NA	NA
BBI32014.1\|1744631_1744811_+	hypothetical protein	NA	NA	NA	NA
BBI32015.1\|1744934_1745798_+	hypothetical protein	NA	NA	NA	NA
BBI32016.1\|1745778_1746087_+	hypothetical protein	NA	NA	NA	NA
BBI32017.1\|1746083_1746341_+	hypothetical protein	NA	NA	NA	NA
BBI32018.1\|1746315_1746621_+	hypothetical protein	A0A2H4J073	uncultured_Caudovirales_phage	2.8e-20	59.5
BBI32019.1\|1746860_1748186_+	hypothetical protein	J9PLX4	Bacillus_phage	1.4e-15	32.9
BBI32020.1\|1748182_1749151_+	membrane protein	A0A2H4J025	uncultured_Caudovirales_phage	4.3e-14	43.2
BBI32021.1\|1749221_1749509_+	hypothetical protein	NA	NA	NA	NA
BBI32022.1\|1749501_1750203_+	hypothetical protein	NA	NA	NA	NA
BBI32023.1\|1750205_1750628_+	phage protein	S5MUL4	Brevibacillus_phage	1.2e-18	40.0
BBI32024.1\|1750620_1751001_+	hypothetical protein	A8ASN9	Listeria_phage	1.5e-15	36.7
BBI32025.1\|1751058_1751274_+	hypothetical protein	NA	NA	NA	NA
BBI32026.1\|1751302_1751734_+	hypothetical protein	NA	NA	NA	NA
BBI32027.1\|1751783_1752452_+	hypothetical protein	NA	NA	NA	NA
BBI32028.1\|1752711_1753302_+\|integrase	site-specific integrase	W8CYP1	Bacillus_phage	1.3e-45	51.1
BBI32029.1\|1753556_1754279_+	hypothetical protein	A0A2H4J4R0	uncultured_Caudovirales_phage	8.1e-26	36.1
BBI32030.1\|1754262_1755510_+\|terminase	putative terminase, large subunit - phage associated	A0A0S0KEN9	Bacillus_phage	4.6e-138	57.4
BBI32031.1\|1755521_1756982_+\|portal	portal protein	S5MNW1	Brevibacillus_phage	5.4e-146	56.9
BBI32032.1\|1756974_1757181_+	hypothetical protein	NA	NA	NA	NA
BBI32033.1\|1757177_1758875_+	hypothetical protein	A0A0A8WIE7	Clostridium_phage	7.8e-96	50.0
1757800:1757813	attR	NA	NA	NA	NA
BBI32034.1\|1758879_1759134_+	hypothetical protein	NA	NA	NA	NA
BBI32035.1\|1759316_1759889_+	hypothetical protein	S5MUG0	Brevibacillus_phage	4.7e-29	47.0
BBI32036.1\|1759911_1760868_+	hypothetical protein	A0A1J0MCK3	Streptomyces_phage	3.2e-94	60.7
BBI32037.1\|1760880_1761249_+	hypothetical protein	S5MC61	Brevibacillus_phage	3.1e-05	45.6
BBI32038.1\|1761211_1761604_+	hypothetical protein	NA	NA	NA	NA
BBI32039.1\|1761605_1761971_+	phage protein	S5MBV4	Brevibacillus_phage	7.9e-30	57.9
BBI32040.1\|1761970_1762375_+	phage protein	A0A0A7RTT0	Clostridium_phage	1.0e-25	45.5
BBI32041.1\|1762379_1762808_+	hypothetical protein	S5MUN8	Brevibacillus_phage	2.1e-29	43.4
BBI32042.1\|1762804_1762996_+	hypothetical protein	NA	NA	NA	NA
BBI32043.1\|1762996_1764310_+	hypothetical protein	A0A0K2CNL4	Brevibacillus_phage	2.0e-115	49.9
BBI32044.1\|1764311_1764776_+	phage protein	S5MA61	Brevibacillus_phage	7.7e-54	67.8
BBI32045.1\|1764806_1765232_+\|portal	phage portal protein	A0A0A7RTN3	Clostridium_phage	1.2e-13	35.7
BBI32046.1\|1765462_1766107_+	hypothetical protein	NA	NA	NA	NA
BBI32047.1\|1766160_1768665_+	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	1.2e-49	28.9
BBI32048.1\|1768661_1769366_+	peptidoglycan-binding protein LysM	S5MUH0	Brevibacillus_phage	2.5e-56	52.4
BBI32049.1\|1769381_1769546_+	hypothetical protein	NA	NA	NA	NA
BBI32050.1\|1769540_1769795_-	hypothetical protein	NA	NA	NA	NA
BBI32051.1\|1769889_1770849_+	hypothetical protein	S5MNC9	Brevibacillus_phage	6.4e-103	56.2
BBI32052.1\|1770852_1771149_+	phage protein	S5MC71	Brevibacillus_phage	3.7e-17	42.7
BBI32053.1\|1771151_1771553_+	hypothetical protein	S5M612	Brevibacillus_phage	1.3e-28	50.4
BBI32054.1\|1771545_1772625_+\|tail	phage tail protein	S5MUH6	Brevibacillus_phage	5.7e-92	47.2
BBI32055.1\|1772632_1773205_+\|portal	phage portal protein	A0A0K2CNM8	Brevibacillus_phage	9.8e-35	46.5
BBI32056.1\|1773201_1773486_+	hypothetical protein	NA	NA	NA	NA
BBI32057.1\|1773485_1774391_+	hypothetical protein	A0A1D8KSC4	Synechococcus_phage	2.6e-05	39.5
BBI32058.1\|1774414_1775587_+	hypothetical protein	NA	NA	NA	NA
BBI32059.1\|1775567_1775948_+	hypothetical protein	A0A0S2GM64	Bacillus_phage	7.3e-10	40.2
BBI32060.1\|1775961_1776246_+	hypothetical protein	A0A0A7RUL4	Clostridium_phage	3.7e-11	44.6
BBI32061.1\|1776242_1777829_+	hypothetical protein	NA	NA	NA	NA
BBI32062.1\|1778107_1778341_+	hypothetical protein	A0A1B2APZ1	Phage_Wrath	3.8e-09	44.9
BBI32063.1\|1778330_1778528_+	hypothetical protein	A0A2I7SCV7	Paenibacillus_phage	1.9e-06	49.2

DBSCAN-SWA_4

2082698 : 2104626

Clostridium_phage(42.11%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI32347.1\|2082698_2083289_+	hypothetical protein	A0A0K2CZ91	Paenibacillus_phage	3.4e-54	70.9
BBI32348.1\|2083298_2084879_+	putative DEAD box family helicase, phage associated	A0A2I7SC38	Paenibacillus_phage	7.9e-276	88.8
BBI32349.1\|2084917_2085187_+	hypothetical protein	NA	NA	NA	NA
BBI32350.1\|2085466_2085691_-	hypothetical protein	NA	NA	NA	NA
BBI32351.1\|2085772_2088034_+	hypothetical protein	A0A0K2CZ75	Paenibacillus_phage	0.0e+00	82.4
BBI32352.1\|2088375_2088702_+	hypothetical protein	A0A2I7SC39	Paenibacillus_phage	2.0e-40	72.4
BBI32353.1\|2088705_2088945_+	hypothetical protein	A0A2I7SC31	Paenibacillus_phage	9.4e-24	66.7
BBI32354.1\|2088963_2089488_+	hypothetical protein	S5MNT8	Brevibacillus_phage	4.9e-49	54.9
BBI32355.1\|2089931_2090516_+	hypothetical protein	D2J052	Enterococcus_phage	3.1e-36	49.1
BBI32356.1\|2090508_2091903_+\|terminase	terminase	A0A090EUA8	Clostridium_phage	6.5e-189	69.4
BBI32357.1\|2091906_2092095_+	hypothetical protein	NA	NA	NA	NA
BBI32358.1\|2092081_2093587_+	hypothetical protein	M9Q246	Clostridium_phage	1.6e-177	62.2
BBI32359.1\|2093583_2094729_+	hypothetical protein	M9Q2F2	Clostridium_phage	6.5e-86	43.4
BBI32360.1\|2094945_2095527_+	hypothetical protein	S5MUG0	Brevibacillus_phage	2.0e-27	45.9
BBI32361.1\|2095556_2096432_+\|capsid	phage capsid protein	M9Q2F4	Clostridium_phage	2.4e-72	50.7
BBI32362.1\|2096467_2096761_+	hypothetical protein	NA	NA	NA	NA
BBI32363.1\|2096765_2097131_+	hypothetical protein	M9Q2K9	Clostridium_phage	4.2e-23	48.8
BBI32364.1\|2097130_2097457_+	hypothetical protein	M9Q2I3	Clostridium_phage	1.7e-36	69.5
BBI32365.1\|2097456_2097834_+	hypothetical protein	M9Q249	Clostridium_phage	1.6e-25	43.5
BBI32366.1\|2097830_2098217_+	hypothetical protein	M9Q2F6	Clostridium_phage	2.6e-39	60.2
BBI32367.1\|2098226_2098682_+	hypothetical protein	O03972	Lactobacillus_phage	1.0e-10	29.4
BBI32368.1\|2098711_2099014_+	hypothetical protein	NA	NA	NA	NA
BBI32369.1\|2099039_2099363_+	hypothetical protein	NA	NA	NA	NA
BBI32370.1\|2099366_2101829_+	hypothetical protein	R9TQH4	Paenibacillus_phage	3.3e-47	40.1
BBI32371.1\|2101825_2102194_+	hypothetical protein	NA	NA	NA	NA
BBI32372.1\|2102196_2104626_+	hypothetical protein	A0A1B1IPM9	uncultured_Mediterranean_phage	4.4e-07	26.0

DBSCAN-SWA_5

2148206 : 2236427

104

Clostridium_phage(19.35%)

integrase,portal,terminase,coat,tRNA,protease

attL 2172451:2172495|attR 2206604:2206648

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI32422.1\|2148206_2149394_-\|coat	endospore coat-associated protein YheD	NA	NA	NA	NA
BBI32423.1\|2149469_2150642_-	hypothetical protein	NA	NA	NA	NA
BBI32424.1\|2150638_2152015_-\|coat	endospore coat-associated protein YheD	NA	NA	NA	NA
BBI32425.1\|2151995_2153168_-\|coat	endospore coat-associated protein YheC	NA	NA	NA	NA
BBI32426.1\|2153142_2154510_-	hypothetical protein	NA	NA	NA	NA
BBI32427.1\|2154707_2155469_+	methyltransferase	NA	NA	NA	NA
BBI32428.1\|2155465_2156515_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
BBI32429.1\|2156736_2156937_+	hypothetical protein	NA	NA	NA	NA
BBI32430.1\|2157028_2157235_+	hypothetical protein	NA	NA	NA	NA
BBI32431.1\|2157527_2158367_-\|integrase	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	2.0e-07	25.7
BBI32432.1\|2158474_2158795_-	hypothetical protein	NA	NA	NA	NA
BBI32433.1\|2159428_2159977_-	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	2.2e-39	49.4
BBI32434.1\|2160132_2161218_+	sporulation protein	NA	NA	NA	NA
BBI32435.1\|2161222_2162320_-	hypothetical protein	NA	NA	NA	NA
BBI32436.1\|2162339_2163485_-	hypothetical protein	NA	NA	NA	NA
BBI32437.1\|2163488_2164835_-	hypothetical protein	NA	NA	NA	NA
BBI32438.1\|2164972_2165719_+	ribonuclease PH	NA	NA	NA	NA
BBI32439.1\|2165715_2166375_+	hypothetical protein	A0A1K0ISQ7	Cassava_brown_streak_virus	2.7e-12	27.6
BBI32440.1\|2167380_2169237_-	asparagine synthetase B	A0A1V0SGM7	Hokovirus	2.4e-34	25.8
BBI32441.1\|2169374_2169704_+	hypothetical protein	NA	NA	NA	NA
BBI32442.1\|2169727_2170066_+	hypothetical protein	NA	NA	NA	NA
BBI32443.1\|2170105_2170237_+	hypothetical protein	NA	NA	NA	NA
BBI32444.1\|2170316_2170892_-	N-acetyltransferase	NA	NA	NA	NA
BBI32445.1\|2171201_2172230_-	hypothetical protein	NA	NA	NA	NA
2172451:2172495	attL	NA	NA	NA	NA
BBI32446.1\|2172545_2173943_-\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	1.8e-61	34.6
BBI32447.1\|2174068_2174401_+	hypothetical protein	NA	NA	NA	NA
BBI32448.1\|2174599_2174812_-	hypothetical protein	NA	NA	NA	NA
BBI32449.1\|2174936_2175113_+	hypothetical protein	NA	NA	NA	NA
BBI32450.1\|2175030_2175384_-	hypothetical protein	A0A0K2CNE0	Brevibacillus_phage	8.2e-16	67.7
BBI32451.1\|2175543_2175768_+	hypothetical protein	NA	NA	NA	NA
BBI32452.1\|2175780_2176038_+	hypothetical protein	NA	NA	NA	NA
BBI32453.1\|2176167_2176428_+	hypothetical protein	S5MNZ7	Brevibacillus_phage	4.5e-19	61.2
BBI32454.1\|2176440_2176701_+	hypothetical protein	NA	NA	NA	NA
BBI32455.1\|2176922_2177102_+	hypothetical protein	NA	NA	NA	NA
BBI32456.1\|2177221_2178223_+	hypothetical protein	A0A2I7SDJ4	Paenibacillus_phage	1.5e-22	49.1
BBI32457.1\|2178203_2178512_+	hypothetical protein	NA	NA	NA	NA
BBI32458.1\|2178504_2178783_+	hypothetical protein	NA	NA	NA	NA
BBI32459.1\|2178748_2179057_+	hypothetical protein	A0A0A7RTP9	Clostridium_phage	4.1e-11	47.4
BBI32460.1\|2179053_2179854_+	SAM-dependent methyltransferase	Q24LC8	Clostridium_phage	1.6e-54	41.6
BBI32461.1\|2179912_2180260_+	hypothetical protein	NA	NA	NA	NA
BBI32462.1\|2180286_2180973_+	hypothetical protein	NA	NA	NA	NA
BBI32463.1\|2180974_2181481_+	hypothetical protein	A0A2I6UGC7	Salinibacter_virus	7.1e-29	44.0
BBI32464.1\|2181504_2181825_+	hypothetical protein	NA	NA	NA	NA
BBI32465.1\|2181877_2182126_+	hypothetical protein	NA	NA	NA	NA
BBI32466.1\|2182159_2182378_+	hypothetical protein	NA	NA	NA	NA
BBI32467.1\|2182412_2182703_+	hypothetical protein	NA	NA	NA	NA
BBI32468.1\|2182654_2183008_+	hypothetical protein	NA	NA	NA	NA
BBI32469.1\|2183004_2183367_+	hypothetical protein	NA	NA	NA	NA
BBI32470.1\|2183353_2184337_+	hypothetical protein	NA	NA	NA	NA
BBI32471.1\|2184333_2184567_+	hypothetical protein	NA	NA	NA	NA
BBI32472.1\|2184663_2185020_+	hypothetical protein	NA	NA	NA	NA
BBI32473.1\|2185415_2185604_+	hypothetical protein	NA	NA	NA	NA
BBI32474.1\|2185600_2186158_+\|integrase	site-specific integrase	D2XR58	Bacillus_phage	4.1e-46	50.5
BBI32475.1\|2186519_2186723_+	hypothetical protein	NA	NA	NA	NA
BBI32476.1\|2186848_2187208_+	hypothetical protein	A0A0U4JV93	Exiguobacterium_phage	8.9e-26	58.7
BBI32477.1\|2187204_2188938_+\|terminase	terminase	A6XMJ4	Bacillus_virus	6.7e-252	72.8
BBI32478.1\|2189002_2190148_+\|portal	phage portal protein	A6XMJ5	Bacillus_virus	2.1e-145	62.7
BBI32479.1\|2190137_2190719_+	hypothetical protein	Q0H262	Geobacillus_phage	5.2e-68	63.7
BBI32480.1\|2190718_2192032_+	hypothetical protein	Q0H261	Geobacillus_phage	5.5e-89	52.5
BBI32481.1\|2192055_2192190_+	hypothetical protein	NA	NA	NA	NA
BBI32482.1\|2192180_2192465_+	hypothetical protein	A6XMJ8	Bacillus_virus	5.2e-29	71.1
BBI32483.1\|2192451_2193069_+	hypothetical protein	R9TPZ2	Paenibacillus_phage	8.2e-11	42.0
BBI32484.1\|2193068_2193497_+	hypothetical protein	NA	NA	NA	NA
BBI32485.1\|2193483_2193900_+	hypothetical protein	NA	NA	NA	NA
BBI32486.1\|2193913_2194981_+\|portal	phage portal protein	A0A0A7S0D2	Clostridium_phage	2.3e-61	41.7
BBI32487.1\|2194995_2195421_+	hypothetical protein	A0A0A7RVT1	Clostridium_phage	1.2e-26	40.3
BBI32488.1\|2195474_2195861_+	hypothetical protein	NA	NA	NA	NA
BBI32489.1\|2196057_2197926_+	hypothetical protein	NA	NA	NA	NA
BBI32490.1\|2197940_2198366_+	hypothetical protein	NA	NA	NA	NA
BBI32491.1\|2198370_2199450_+	hypothetical protein	NA	NA	NA	NA
BBI32492.1\|2199446_2199704_+	hypothetical protein	NA	NA	NA	NA
BBI32493.1\|2199716_2200148_+	hypothetical protein	NA	NA	NA	NA
BBI32494.1\|2200140_2201184_+	hypothetical protein	A0A0A7RUN3	Clostridium_phage	8.6e-45	36.4
BBI32495.1\|2201173_2201716_+	hypothetical protein	A0A0A7RTU9	Clostridium_phage	5.7e-16	35.9
BBI32496.1\|2201718_2203080_+	hypothetical protein	S6B1J7	Thermus_phage	7.8e-38	33.2
BBI32497.1\|2203086_2203473_+	hypothetical protein	S6C455	Thermus_phage	2.4e-32	58.1
BBI32498.1\|2203472_2203616_+	hypothetical protein	NA	NA	NA	NA
BBI32499.1\|2203651_2204020_+	hypothetical protein	NA	NA	NA	NA
BBI32500.1\|2204033_2204378_+	hypothetical protein	NA	NA	NA	NA
BBI32501.1\|2204379_2205186_+	hypothetical protein	NA	NA	NA	NA
BBI32502.1\|2205252_2205828_-	hypothetical protein	A0A0K2CP90	Brevibacillus_phage	3.1e-12	27.2
BBI32503.1\|2206125_2206464_+	hypothetical protein	NA	NA	NA	NA
BBI32504.1\|2206957_2207884_+	hypothetical protein	NA	NA	NA	NA
2206604:2206648	attR	NA	NA	NA	NA
BBI32505.1\|2207988_2209278_+	trigger factor	NA	NA	NA	NA
BBI32506.1\|2209461_2210064_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	7.9e-59	59.5
BBI32507.1\|2210121_2211378_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.9e-147	63.6
BBI32508.1\|2211497_2212598_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA
BBI32509.1\|2212617_2213076_+	hypothetical protein	NA	NA	NA	NA
BBI32510.1\|2213103_2216388_+	helicase SNF	A0A160DHD3	Gordonia_phage	2.1e-36	27.5
BBI32511.1\|2217501_2219265_+\|protease	ATP-dependent protease LonB	NA	NA	NA	NA
BBI32512.1\|2219446_2221831_+\|protease	Lon protease 1	A0A0R6PGP8	Moraxella_phage	1.1e-183	44.9
BBI32513.1\|2221849_2222500_+	putative GTP-binding protein EngB	NA	NA	NA	NA
BBI32514.1\|2222776_2224189_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
BBI32515.1\|2224217_2225039_+	protein HemX	NA	NA	NA	NA
BBI32516.1\|2225082_2225718_+	precorrin-2 dehydrogenase	NA	NA	NA	NA
BBI32517.1\|2225725_2226664_+	porphobilinogen deaminase	NA	NA	NA	NA
BBI32518.1\|2226668_2228219_+	hypothetical protein	NA	NA	NA	NA
BBI32519.1\|2228223_2229213_+	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA
BBI32520.1\|2229232_2230534_+	glutamate-1-semialdehyde 2,1-aminomutase 2	NA	NA	NA	NA
BBI32521.1\|2230685_2231981_+	hypothetical protein	NA	NA	NA	NA
BBI32522.1\|2232057_2232255_-	hypothetical protein	NA	NA	NA	NA
BBI32523.1\|2232261_2232561_-	hypothetical protein	NA	NA	NA	NA
BBI32524.1\|2233318_2233534_+	hypothetical protein	NA	NA	NA	NA
BBI32525.1\|2233760_2236427_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.1e-163	41.6

DBSCAN-SWA_6

2954869 : 2964984

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI33142.1\|2954869_2955304_+	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.0e-23	47.2
BBI33143.1\|2956551_2956989_-	hypothetical protein	NA	NA	NA	NA
BBI33144.1\|2957124_2958267_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-55	38.3
BBI33145.1\|2958267_2958933_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	2.6e-39	42.6
BBI33146.1\|2958947_2960177_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-121	54.9
BBI33147.1\|2960219_2960690_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.5e-41	57.0
BBI33148.1\|2960761_2961553_+	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.6e-06	29.6
BBI33149.1\|2961521_2962205_+	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-13	39.7
BBI33150.1\|2962269_2962956_+	hypothetical protein	NA	NA	NA	NA
BBI33151.1\|2963059_2963548_+	putative spore protein YtfJ	NA	NA	NA	NA
BBI33152.1\|2963772_2964984_+	D-alanyl-D-alanine carboxypeptidase DacB	B6DZZ7	Stx2-converting_phage	4.4e-24	33.8

DBSCAN-SWA_7

3504655 : 3512501

Bacillus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI33666.1\|3504655_3505492_+	putative endonuclease 4	A0A146JI69	Tokyovirus	1.8e-16	26.7
BBI33667.1\|3505494_3505842_+	hypothetical protein	A0A0A0RP18	Bacillus_phage	5.8e-06	38.2
BBI33668.1\|3505945_3506152_+	hypothetical protein	NA	NA	NA	NA
BBI33669.1\|3506151_3506928_+	putative ABC transporter ATP-binding protein YlmA	G3M9Y6	Bacillus_virus	6.4e-13	24.9
BBI33670.1\|3506927_3507950_+	hypothetical protein	NA	NA	NA	NA
BBI33671.1\|3508066_3509686_+	hypothetical protein	L7RGQ5	Acanthamoeba_polyphaga_moumouvirus	4.2e-22	31.3
BBI33672.1\|3509858_3510557_+	putative transcriptional regulatory protein YkoG	W8CYM9	Bacillus_phage	2.3e-30	31.4
BBI33673.1\|3510553_3511909_+	sensor histidine kinase YkoH	W8CYF6	Bacillus_phage	1.7e-29	32.4
BBI33674.1\|3512006_3512501_-	hypothetical protein	A0A076G910	Bacillus_phage	8.3e-06	33.0

DBSCAN-SWA_8

5747049 : 5761547

Prochlorococcus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI35702.1\|5747049_5748597_-	bifunctional purine biosynthesis protein PurH	Q58MG4	Prochlorococcus_phage	4.5e-74	52.3
BBI35703.1\|5748611_5749265_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-24	36.6
BBI35704.1\|5749261_5750308_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.7e-70	45.3
BBI35705.1\|5750586_5752050_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.8e-47	31.0
BBI35706.1\|5752079_5754335_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.1e-166	42.3
BBI35707.1\|5754312_5755005_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
BBI35708.1\|5755012_5755255_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	1.1e-08	39.0
BBI35709.1\|5755554_5756439_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0M4JBD3	Mollivirus	2.4e-40	33.8
BBI35710.1\|5756463_5757759_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	9.7e-22	25.4
BBI35711.1\|5757765_5759022_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
BBI35712.1\|5759018_5759504_-	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	9.6e-23	43.9
BBI35713.1\|5760158_5761547_-	permease	A0A0R6PHV4	Moraxella_phage	5.3e-42	30.5

DBSCAN-SWA_9

6291154 : 6300149

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
BBI36165.1\|6291154_6292357_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.4e-155	69.3
BBI36166.1\|6292515_6292782_-	hypothetical protein	A0A1P8CX76	Bacillus_phage	6.4e-05	36.9
BBI36167.1\|6292895_6293753_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
BBI36168.1\|6293787_6294762_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	9.7e-75	45.1
BBI36169.1\|6294769_6295327_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	7.1e-38	44.9
BBI36170.1\|6295341_6296085_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.2e-52	44.4
BBI36171.1\|6296205_6296706_-	hypothetical protein	NA	NA	NA	NA
BBI36172.1\|6296809_6297724_-	biofilm formation protein PslC	NA	NA	NA	NA
BBI36173.1\|6297638_6297875_-	hypothetical protein	NA	NA	NA	NA
BBI36174.1\|6298176_6299004_-	hypothetical protein	NA	NA	NA	NA
BBI36175.1\|6298982_6300149_-	glycosyl transferase family 1	B6EFC4	Stygiolobus_rod-shaped_virus	2.0e-05	30.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. AP019400

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection