CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP036437	Citrobacter freundii complex strain ABFQG plasmid pKPC-e4b7, complete sequence	0 crisprs	NA	0
CP036436	Citrobacter freundii complex strain ABFQG plasmid pKPC-5fbf, complete sequence	0 crisprs	NA	0
CP036435	Citrobacter freundii complex strain ABFQG, complete genome	0 crisprs	cas3,DEDDh,WYL,DinG,csa3,RT	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

174272 : 251184

uncultured_Caudovirales_phage(52.63%)

head,tRNA,portal,protease,integrase,tail,terminase,capsid

attL 211287:211304|attR 227512:227529

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBI27830.1\|174272_174776_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	7.3e-26	54.8
QBI27831.1\|174781_175420_-	stringent starvation protein A	NA	NA	NA	NA
QBI27832.1\|175534_175819_+	hypothetical protein	NA	NA	NA	NA
QBI27833.1\|175736_176129_-	30S ribosomal protein S9	NA	NA	NA	NA
QBI27834.1\|176144_176573_-	50S ribosomal protein L13	NA	NA	NA	NA
QBI27835.1\|176791_177919_-	cell division protein ZapE	NA	NA	NA	NA
QBI32051.1\|178111_178510_+	hypothetical protein	NA	NA	NA	NA
QBI27836.1\|178678_180046_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-20	25.6
QBI27837.1\|180135_181203_+\|protease	serine endoprotease DegS	NA	NA	NA	NA
QBI27838.1\|181259_182195_-	malate dehydrogenase	NA	NA	NA	NA
QBI27839.1\|182631_183102_+	transcriptional regulator ArgR	NA	NA	NA	NA
QBI27840.1\|183478_183745_+	DUF1471 domain-containing protein	NA	NA	NA	NA
QBI27841.1\|183802_184081_-	hypothetical protein	NA	NA	NA	NA
QBI27842.1\|184200_186168_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
QBI27843.1\|186173_187106_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
QBI27844.1\|187113_187317_-	protein AaeX	NA	NA	NA	NA
QBI27845.1\|187501_188431_+	transcriptional regulator	NA	NA	NA	NA
QBI32052.1\|188517_189963_-\|protease	metalloprotease TldD	NA	NA	NA	NA
QBI27846.1\|190124_193940_-	TIGR02099 family protein	NA	NA	NA	NA
QBI27847.1\|194051_195521_-	ribonuclease E/G	NA	NA	NA	NA
QBI27848.1\|195510_196104_-	septum formation inhibitor Maf	NA	NA	NA	NA
QBI27849.1\|196111_196600_-	rod shape-determining protein MreD	NA	NA	NA	NA
QBI27850.1\|196600_197623_-	rod shape-determining protein MreC	NA	NA	NA	NA
QBI27851.1\|197689_198733_-	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
QBI32053.1\|198830_199031_+	hypothetical protein	NA	NA	NA	NA
QBI27852.1\|199039_200980_-	RNase E specificity factor CsrD	NA	NA	NA	NA
QBI27853.1\|201205_202180_+	oxidoreductase	NA	NA	NA	NA
QBI27854.1\|202299_203304_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
QBI27855.1\|203304_203904_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
QBI27856.1\|204296_204767_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
QBI27857.1\|204777_206127_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
QBI27858.1\|206234_206477_+	hypothetical protein	NA	NA	NA	NA
QBI27859.1\|206466_207918_+	sodium/panthothenate symporter	NA	NA	NA	NA
QBI27860.1\|207929_208811_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
QBI27861.1\|208938_209715_+	carbonic anhydrase	NA	NA	NA	NA
QBI27862.1\|210013_210979_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
QBI27863.1\|211004_211301_+	Fis family transcriptional regulator	NA	NA	NA	NA
211287:211304	attL	NA	NA	NA	NA
QBI27864.1\|211458_211767_-	DUF3892 domain-containing protein	NA	NA	NA	NA
QBI27865.1\|211917_213579_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	97.5
QBI27866.1\|213562_213919_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
QBI27867.1\|213876_214068_-\|terminase	terminase	NA	NA	NA	NA
QBI27868.1\|214049_214202_-	hypothetical protein	NA	NA	NA	NA
QBI27869.1\|214194_214638_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.1e-49	63.3
QBI27870.1\|214637_214931_-	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.0e-44	85.6
QBI27871.1\|214927_215266_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.8e-52	90.2
QBI32054.1\|215262_216489_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	5.8e-234	97.3
QBI27872.1\|216499_217060_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	4.5e-101	98.9
QBI27873.1\|217111_218278_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	7.5e-215	99.2
QBI27874.1\|218510_218813_-	hypothetical protein	A0A2H4JB54	uncultured_Caudovirales_phage	2.0e-42	86.3
QBI27875.1\|219167_221858_-	DNA primase	A0A1W6JPG0	Morganella_phage	1.4e-272	53.7
QBI27876.1\|221854_222109_-	hypothetical protein	NA	NA	NA	NA
QBI27877.1\|222098_222305_-	hypothetical protein	NA	NA	NA	NA
QBI27878.1\|222301_222496_-	hypothetical protein	NA	NA	NA	NA
QBI32056.1\|222488_222680_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
QBI32055.1\|222822_223026_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
QBI27879.1\|224565_224850_-	AlpA family phage regulatory protein	NA	NA	NA	NA
QBI27880.1\|225470_226121_-	hypothetical protein	NA	NA	NA	NA
QBI27881.1\|226120_227341_-\|integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.3e-153	62.7
QBI27882.1\|227614_228499_+	adenine-specific DNA-methyltransferase	M4QNN5	Ostreococcus_lucimarinus_virus	2.8e-28	32.8
227512:227529	attR	NA	NA	NA	NA
QBI27883.1\|228581_228746_+	DUF2556 domain-containing protein	NA	NA	NA	NA
QBI27884.1\|228791_229448_-	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
QBI27885.1\|229867_231028_+	MexX family efflux pump subunit	NA	NA	NA	NA
QBI27886.1\|231039_234153_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
QBI27887.1\|234423_234645_+	hypothetical protein	NA	NA	NA	NA
QBI27888.1\|235105_236131_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	5.3e-71	39.8
QBI27889.1\|236200_237382_+	amino acid ABC transporter permease	NA	NA	NA	NA
QBI27890.1\|237391_238495_+	amino acid ABC transporter permease	NA	NA	NA	NA
QBI27891.1\|238502_239261_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.1e-20	31.7
QBI27892.1\|245020_245233_-	hypothetical protein	NA	NA	NA	NA
QBI27893.1\|245260_245815_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
QBI27894.1\|245790_246048_-	DUF1488 domain-containing protein	NA	NA	NA	NA
QBI27895.1\|246044_246866_-	shikimate dehydrogenase	NA	NA	NA	NA
QBI27896.1\|246867_247440_-	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
QBI27897.1\|247444_247987_-	hypothetical protein	NA	NA	NA	NA
QBI27898.1\|248013_248487_-	DUF494 domain-containing protein	NA	NA	NA	NA
QBI27899.1\|248458_249583_-	DNA-protecting protein DprA	NA	NA	NA	NA
QBI27900.1\|249712_250222_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
QBI27901.1\|250236_251184_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.0e-08	39.8

DBSCAN-SWA_2

2686500 : 2758618

Klebsiella_phage(25.86%)

head,tRNA,integrase,portal,tail,terminase,holin,transposase,capsid

attL 2683330:2683344|attR 2704186:2704200

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2683330:2683344	attL	NA	NA	NA	NA
QBI30050.1\|2686500_2687787_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	5.5e-110	50.4
QBI30051.1\|2687786_2688002_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	5.7e-20	56.3
QBI30052.1\|2688068_2690540_-	exodeoxyribonuclease VIII	K7P6V4	Enterobacteria_phage	6.0e-113	38.8
QBI32148.1\|2690681_2691008_-	transcriptional regulator	NA	NA	NA	NA
QBI30053.1\|2691293_2691608_+	hypothetical protein	NA	NA	NA	NA
QBI30054.1\|2691983_2692364_-	transcriptional regulator	K7PH71	Enterobacterial_phage	6.5e-19	66.7
QBI30055.1\|2692469_2692682_+	XRE family transcriptional regulator	A0A077K9X2	Edwardsiella_phage	3.8e-16	59.7
QBI30056.1\|2692685_2693240_+	hypothetical protein	NA	NA	NA	NA
QBI30057.1\|2694270_2694861_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.5e-67	77.5
QBI30058.1\|2694984_2695338_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	4.8e-24	51.9
QBI30059.1\|2695385_2695748_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
QBI30060.1\|2695765_2697517_+	arsenical pump-driving ATPase	NA	NA	NA	NA
QBI30061.1\|2697563_2698853_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	9.6e-171	73.8
QBI30062.1\|2698865_2699291_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	4.3e-51	70.7
QBI30063.1\|2699358_2699655_-	ArsR family transcriptional regulator	NA	NA	NA	NA
QBI30064.1\|2699755_2700847_+	permease	NA	NA	NA	NA
QBI30065.1\|2701133_2701367_+	DinI family protein	K7PM44	Enterobacteria_phage	6.0e-31	83.1
QBI30066.1\|2701412_2701658_+	hypothetical protein	H6WRY6	Salmonella_phage	2.9e-20	63.0
QBI30067.1\|2701787_2701988_+	hypothetical protein	H6WRY8	Salmonella_phage	1.2e-16	60.0
QBI30068.1\|2701990_2702350_+	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	1.2e-41	64.4
QBI30069.1\|2702346_2703387_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-96	49.7
QBI32149.1\|2703400_2704015_+	hypothetical protein	H9C175	Pectobacterium_phage	1.0e-85	76.9
QBI30070.1\|2704101_2704299_-	oxidoreductase	NA	NA	NA	NA
2704186:2704200	attR	NA	NA	NA	NA
QBI30071.1\|2704767_2705184_-	hypothetical protein	NA	NA	NA	NA
QBI30072.1\|2705286_2705475_+	hypothetical protein	NA	NA	NA	NA
QBI30073.1\|2705628_2705907_+\|holin	holin	K7P6H9	Enterobacteria_phage	3.9e-45	100.0
QBI30074.1\|2705878_2706427_+	lysozyme	K7PM52	Enterobacteria_phage	2.1e-98	94.5
QBI30075.1\|2706405_2706939_+	DUF2514 domain-containing protein	NA	NA	NA	NA
QBI30076.1\|2706935_2707166_+	hypothetical protein	NA	NA	NA	NA
QBI32150.1\|2707556_2707754_+	hypothetical protein	K7PHC3	Enterobacterial_phage	3.7e-26	90.8
QBI30077.1\|2707791_2707947_+	DUF2514 domain-containing protein	NA	NA	NA	NA
QBI30078.1\|2708325_2708538_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	4.6e-22	72.9
QBI32151.1\|2708548_2708737_+	cold-shock protein	NA	NA	NA	NA
QBI30079.1\|2708810_2709041_+	hypothetical protein	NA	NA	NA	NA
QBI30080.1\|2709245_2709419_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
QBI30081.1\|2709791_2710331_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	6.4e-44	79.0
QBI30082.1\|2710606_2710969_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.7e-56	86.7
QBI32152.1\|2711280_2711658_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.4e-58	90.4
QBI30083.1\|2711657_2712005_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	4.8e-61	98.3
QBI30084.1\|2712054_2713593_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.7e-271	91.0
QBI30085.1\|2713643_2714150_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.0e-83	93.9
QBI30086.1\|2714146_2715874_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	92.8
QBI30087.1\|2715867_2716047_+	hypothetical protein	Q6UAX9	Klebsiella_phage	3.3e-13	71.2
QBI30088.1\|2716046_2717306_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	7.1e-219	89.0
QBI30089.1\|2717342_2718263_+	serine peptidase	Q6UAX7	Klebsiella_phage	6.0e-135	79.7
QBI30090.1\|2718335_2719622_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	8.0e-210	87.6
QBI30091.1\|2719719_2720097_+	hypothetical protein	Q6UAX5	Klebsiella_phage	3.2e-18	59.5
QBI32153.1\|2720077_2720395_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.8e-39	79.6
QBI30092.1\|2720391_2720742_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	1.6e-43	73.9
QBI30093.1\|2720710_2721100_+	hypothetical protein	Q6UAX2	Klebsiella_phage	4.3e-42	63.7
QBI30094.1\|2721096_2721498_+	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-56	85.0
QBI30095.1\|2721531_2722014_+\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	4.7e-62	81.2
QBI30096.1\|2722076_2722439_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	2.5e-28	56.8
QBI32154.1\|2722453_2722687_+	hypothetical protein	Q6UAW9	Klebsiella_phage	8.3e-25	66.2
QBI30097.1\|2722686_2725977_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	65.3
QBI30098.1\|2725977_2726310_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.0e-40	67.0
QBI30099.1\|2726318_2727014_+\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	1.0e-94	71.0
QBI30100.1\|2727025_2727760_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.2e-115	77.9
QBI30101.1\|2727657_2728335_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.0e-71	71.1
QBI30102.1\|2728407_2731809_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	70.4
QBI30103.1\|2731850_2733803_+	hypothetical protein	A0A0P0ZCC1	Stx2-converting_phage	1.2e-18	50.4
QBI30104.1\|2733814_2734399_+	DUF4376 domain-containing protein	Q7BQC6	Enterobacteria_phage	1.1e-46	47.9
QBI30105.1\|2734634_2735363_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	7.8e-45	44.8
QBI30106.1\|2735566_2736001_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
QBI30107.1\|2735997_2736717_+	short-chain dehydrogenase	NA	NA	NA	NA
QBI30108.1\|2736713_2737970_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
QBI30109.1\|2737971_2738694_+	DUF1365 domain-containing protein	NA	NA	NA	NA
QBI30110.1\|2738690_2739911_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
QBI30111.1\|2739907_2740393_+	DUF2878 domain-containing protein	NA	NA	NA	NA
QBI30112.1\|2740389_2740917_+	hypothetical protein	NA	NA	NA	NA
QBI30113.1\|2740913_2741444_+	DUF3833 domain-containing protein	NA	NA	NA	NA
QBI30114.1\|2741457_2742417_+	DUF1722 domain-containing protein	NA	NA	NA	NA
QBI30115.1\|2742599_2742836_+	hypothetical protein	NA	NA	NA	NA
QBI30116.1\|2743140_2743809_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.3e-81	60.8
QBI30117.1\|2744245_2745616_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.7e-107	44.6
QBI32155.1\|2745619_2746261_-	lysogenization protein HflD	NA	NA	NA	NA
QBI30118.1\|2746295_2747402_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
QBI30119.1\|2747455_2747917_-	NUDIX hydrolase	NA	NA	NA	NA
QBI30120.1\|2747926_2748865_-	hypothetical protein	NA	NA	NA	NA
QBI30121.1\|2748899_2749523_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
QBI30122.1\|2749725_2750976_+	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	1.9e-22	96.3
QBI30123.1\|2751114_2751624_-	DedA family protein	NA	NA	NA	NA
QBI30124.1\|2751798_2752041_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
QBI30125.1\|2752119_2752353_+	DNA polymerase V	A0A222YZE2	Escherichia_phage	6.6e-22	80.3
QBI30126.1\|2752429_2753128_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	68.1
QBI32156.1\|2753213_2753534_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	44.8
QBI30127.1\|2753578_2754868_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.2e-166	70.4
QBI30128.1\|2754880_2755306_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	4.7e-50	70.7
QBI30129.1\|2756194_2756680_+	hypothetical protein	A0A1B0VBR9	Salmonella_phage	2.3e-08	34.9
QBI30130.1\|2756690_2756945_+	hypothetical protein	NA	NA	NA	NA
QBI30131.1\|2757450_2758618_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.4e-166	89.5

DBSCAN-SWA_3

2851351 : 2861389

Tupanvirus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBI30219.1\|2851351_2852335_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
QBI30220.1\|2852350_2854738_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
QBI30221.1\|2854742_2855042_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
QBI30222.1\|2855195_2856176_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
QBI30223.1\|2856236_2856788_+	glutathione peroxidase	NA	NA	NA	NA
QBI30224.1\|2856787_2857537_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
QBI30225.1\|2857614_2858079_+	endopeptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
QBI30226.1\|2858395_2859109_+	EAL domain-containing protein	NA	NA	NA	NA
QBI30227.1\|2859170_2860613_+	SELO family protein	A0A075BSJ0	Microcystis_phage	4.5e-52	35.3
QBI30228.1\|2860609_2861389_-	heme ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	7.9e-11	26.7

DBSCAN-SWA_4

3701981 : 3709606

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBI31005.1\|3701981_3702986_+	NAD-dependent epimerase	A0A0K0KW07	Prochlorococcus_phage	1.9e-17	32.2
QBI31006.1\|3703044_3704211_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.5e-114	55.0
QBI31007.1\|3704409_3705816_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	1.4e-37	28.5
QBI31008.1\|3706148_3707021_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-107	65.2
QBI31009.1\|3707059_3707959_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.0e-30	36.0
QBI31010.1\|3707958_3709047_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.1e-98	52.0
QBI31011.1\|3709063_3709606_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.3e-56	60.7

DBSCAN-SWA_5

3760795 : 3803057

Erwinia_phage(24.39%)

head,plate,portal,integrase,protease,tail,terminase,lysis,capsid

attL 3765057:3765083|attR 3797741:3797767

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBI31049.1\|3760795_3762199_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	5.0e-32	29.2
QBI31050.1\|3762195_3762918_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
QBI31051.1\|3763053_3763386_+	DUF1508 domain-containing protein	NA	NA	NA	NA
QBI31052.1\|3763545_3764907_+	U32 family peptidase	Q6DW11	Phage_TP	5.3e-204	92.9
3765057:3765083	attL	NA	NA	NA	NA
QBI31053.1\|3765458_3765719_+	hypothetical protein	NA	NA	NA	NA
QBI31054.1\|3765945_3766167_-	transcriptional regulator	A0A2I8TV89	Erwinia_phage	7.6e-28	75.3
QBI31055.1\|3766242_3767412_-	hypothetical protein	Q6K1G4	Salmonella_virus	4.6e-172	78.6
QBI31056.1\|3767408_3767873_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	7.9e-59	72.1
QBI31057.1\|3767886_3770328_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	9.6e-305	74.3
QBI31058.1\|3770317_3770440_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.3e-13	87.2
QBI31059.1\|3770472_3770787_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	2.2e-28	66.0
QBI31060.1\|3770840_3771359_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.4e-77	81.4
QBI31061.1\|3771371_3772565_-\|tail	phage tail protein	S4TRX2	Salmonella_phage	3.0e-187	83.1
QBI31062.1\|3772700_3773279_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.3e-58	57.1
QBI31063.1\|3773278_3775210_-\|tail	phage tail protein	Q6K1H2	Salmonella_virus	2.0e-148	83.2
QBI31064.1\|3775220_3775751_-\|tail	phage tail protein I	Q37841	Escherichia_phage	2.1e-95	92.0
QBI31065.1\|3775743_3776652_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	3.6e-140	85.8
QBI31066.1\|3776867_3777218_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.1e-40	74.1
QBI31067.1\|3777214_3777856_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.2e-94	82.2
QBI31068.1\|3778135_3780730_-	hypothetical protein	NA	NA	NA	NA
QBI31069.1\|3780988_3781435_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.7e-48	68.0
QBI31070.1\|3781427_3781895_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	4.5e-62	74.2
QBI31071.1\|3781857_3782016_-\|lysis	phage lysis protein	A0A218M4L1	Erwinia_phage	2.4e-15	75.0
QBI31072.1\|3781990_3782419_-	protein lysB	A0A218M4K2	Erwinia_phage	8.4e-39	63.0
QBI31073.1\|3782400_3782832_-	lysA protein	A0A218M4L6	Erwinia_phage	1.4e-46	62.9
QBI31074.1\|3782828_3783341_-	glycoside hydrolase	A0A218M4K3	Erwinia_phage	1.3e-83	88.8
QBI31075.1\|3783324_3783546_-	primosomal protein	A0A218M4L5	Erwinia_phage	2.2e-27	79.2
QBI31076.1\|3783536_3783740_-\|tail	phage tail protein	S4TTA0	Salmonella_phage	4.5e-27	85.1
QBI31077.1\|3783739_3784246_-\|head	head completion/stabilization protein	O80306	Escherichia_phage	8.9e-64	72.6
QBI31078.1\|3784345_3785101_-\|terminase	terminase	O80305	Escherichia_phage	1.1e-81	73.4
QBI31079.1\|3785104_3786172_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	3.0e-170	84.2
QBI31080.1\|3786233_3787088_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	2.7e-113	71.5
QBI31081.1\|3787254_3789024_+	oxidoreductase	Q9T0R3	Escherichia_phage	6.1e-301	84.7
QBI31082.1\|3789025_3790042_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	9.2e-169	83.3
QBI31083.1\|3790555_3792343_-	hypothetical protein	NA	NA	NA	NA
QBI31084.1\|3794603_3794867_-	hypothetical protein	U5N3W1	Enterobacteria_phage	6.1e-24	61.6
QBI31085.1\|3794897_3795107_-	DUF2732 domain-containing protein	Q7Y4C2	Escherichia_virus	2.1e-11	64.8
QBI31086.1\|3795173_3795674_-	replication protein B	M1SV55	Escherichia_phage	4.1e-69	74.1
QBI31087.1\|3795854_3796130_-	hypothetical protein	Q1JS60	Enterobacteria_phage	7.5e-41	86.4
QBI31088.1\|3796252_3796552_+	XRE family transcriptional regulator	Q1JS63	Enterobacteria_phage	1.9e-34	69.7
QBI31089.1\|3796648_3797656_+\|integrase	integrase	Q83VS6	Escherichia_phage	1.8e-169	86.3
QBI31090.1\|3797860_3800137_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
3797741:3797767	attR	NA	NA	NA	NA
QBI31091.1\|3800167_3800488_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
QBI31092.1\|3800811_3801036_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
QBI31093.1\|3801110_3803057_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.4e-40	41.8

DBSCAN-SWA_6

3852758 : 3861177

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBI31140.1\|3852758_3854792_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.0e-54	27.6
QBI31141.1\|3854998_3855457_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	5.1e-50	68.0
QBI32200.1\|3855499_3855970_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
QBI31142.1\|3856016_3856736_-	two-component system response regulator YehT	NA	NA	NA	NA
QBI31143.1\|3856732_3858418_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
QBI31144.1\|3858643_3859375_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.8e-105	93.5
QBI31145.1\|3859426_3859534_+	hypothetical protein	NA	NA	NA	NA
QBI31146.1\|3859514_3860246_-	osmoprotectant uptake system permease	NA	NA	NA	NA
QBI31147.1\|3860229_3861177_-	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.2e-07	25.6

DBSCAN-SWA_7

4401723 : 4413615

Enterobacteria_phage(71.43%)

integrase

attL 4401651:4401673|attR 4411630:4411652

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4401651:4401673	attL	NA	NA	NA	NA
QBI31610.1\|4401723_4402914_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	1.2e-106	49.9
QBI31611.1\|4403161_4404130_+	hypothetical protein	NA	NA	NA	NA
QBI31612.1\|4404126_4405074_+	RNA-directed DNA polymerase	NA	NA	NA	NA
QBI31613.1\|4405412_4405979_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	6.5e-55	62.2
QBI31614.1\|4405995_4406241_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.6e-31	77.8
QBI31615.1\|4406237_4406975_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.4e-81	65.7
QBI31616.1\|4407774_4408323_+	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.4e-30	70.4
QBI31617.1\|4408319_4408547_+	hypothetical protein	NA	NA	NA	NA
QBI31618.1\|4408543_4408864_+	hypothetical protein	NA	NA	NA	NA
QBI31619.1\|4408878_4411212_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.6
QBI31620.1\|4412017_4413223_+	DUF4236 domain-containing protein	NA	NA	NA	NA
4411630:4411652	attR	NA	NA	NA	NA
QBI31621.1\|4413396_4413615_-	hypothetical protein	G8C7R9	Escherichia_phage	1.2e-20	69.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage