CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035505	Kocuria indica strain CE7 plasmid pCE7, complete sequence	0 crisprs	NA	0	0	0	0
CP035504	Kocuria indica strain CE7 chromosome, complete genome	0 crisprs	DEDDh,csa3,WYL,DinG,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

764466 : 773429

uncultured_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ22561.1\|764466_765444_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.0e-59	39.6
QBJ21004.1\|765436_766474_+	enterochelin ABC transporter permease	NA	NA	NA	NA
QBJ21005.1\|766470_767226_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	3.3e-14	28.5
QBJ21006.1\|767518_767815_+	co-chaperone GroES	A0A221S4M3	uncultured_virus	1.5e-18	46.3
QBJ21007.1\|767922_769506_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.6e-138	50.4
QBJ21008.1\|769737_771849_+	acyltransferase	C6ZR20	Salmonella_phage	9.3e-30	28.8
QBJ22562.1\|771932_773429_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	9.9e-95	40.8

DBSCAN-SWA_2

1605102 : 1654251

Leptospira_phage(20.0%)

transposase,integrase,tRNA

attL 1618239:1618257|attR 1654616:1654634

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ21611.1\|1605102_1606182_-\|tRNA	tRNA (adenine-N1)-methyltransferase	NA	NA	NA	NA
QBJ21612.1\|1606331_1607519_-	peptidase M50B family protein	NA	NA	NA	NA
QBJ21613.1\|1607591_1608488_+	PAC2 family protein	NA	NA	NA	NA
QBJ21614.1\|1608516_1609827_-	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	A0A1V0SAQ2	Catovirus	2.9e-21	26.2
QBJ21615.1\|1609939_1610773_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
QBJ21616.1\|1610897_1611275_-	primosomal protein	NA	NA	NA	NA
QBJ22640.1\|1611362_1611560_+	hypothetical protein	NA	NA	NA	NA
QBJ21617.1\|1611573_1612758_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
QBJ21618.1\|1612912_1614232_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
QBJ22641.1\|1614446_1614950_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QBJ21619.1\|1615205_1615652_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
QBJ21620.1\|1615785_1616595_-	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	4.8e-11	36.2
QBJ21621.1\|1616626_1617349_-	lipoate--protein ligase family protein	NA	NA	NA	NA
1618239:1618257	attL	NA	NA	NA	NA
QBJ21622.1\|1618562_1619306_-	TatD family deoxyribonuclease	NA	NA	NA	NA
QBJ21623.1\|1619302_1620580_-	hypothetical protein	NA	NA	NA	NA
QBJ21624.1\|1620576_1621389_-	hypothetical protein	NA	NA	NA	NA
QBJ21625.1\|1621369_1623241_-	ATPase	NA	NA	NA	NA
QBJ21626.1\|1625554_1626304_+	SDR family oxidoreductase	NA	NA	NA	NA
QBJ21627.1\|1626327_1626888_+	NAD(P)H dehydrogenase	NA	NA	NA	NA
QBJ21628.1\|1626887_1628447_+	acyl-CoA synthetase	NA	NA	NA	NA
QBJ21629.1\|1628443_1629814_+	FAD-dependent monooxygenase	NA	NA	NA	NA
QBJ21630.1\|1629810_1631577_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
QBJ21631.1\|1631573_1632494_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
QBJ21632.1\|1632526_1633612_+	alkene reductase	NA	NA	NA	NA
QBJ21633.1\|1633608_1634724_+	hypothetical protein	NA	NA	NA	NA
QBJ21634.1\|1634762_1635245_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
QBJ21635.1\|1635378_1636528_+\|transposase	IS3-like element ISPfr10 family transposase	S5WIU1	Leptospira_phage	6.6e-38	37.5
QBJ21636.1\|1636593_1636773_+	hypothetical protein	NA	NA	NA	NA
QBJ22642.1\|1636755_1638063_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.6e-181	71.3
QBJ21637.1\|1638624_1639872_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.8e-82	42.1
QBJ21638.1\|1640056_1640680_-	4-phosphopantetheinyl transferase family protein	NA	NA	NA	NA
QBJ21639.1\|1640759_1641116_+	hypothetical protein	NA	NA	NA	NA
QBJ22643.1\|1641106_1642354_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.2e-72	42.2
QBJ21640.1\|1642431_1643559_+	hypothetical protein	A0A2K9L3I8	Tupanvirus	6.9e-08	22.2
QBJ21641.1\|1643562_1643823_+	acyl carrier protein	NA	NA	NA	NA
QBJ21642.1\|1643879_1644254_+	cupin domain-containing protein	NA	NA	NA	NA
QBJ21643.1\|1644162_1645398_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
QBJ21644.1\|1645394_1646060_+	transglutaminase family protein	NA	NA	NA	NA
QBJ21645.1\|1646076_1646850_+	maleate cis-trans isomerase	NA	NA	NA	NA
QBJ22644.1\|1646888_1647362_+	MarR family transcriptional regulator	NA	NA	NA	NA
QBJ21646.1\|1647453_1648074_+	thioredoxin	NA	NA	NA	NA
QBJ21647.1\|1648070_1648559_+	nucleoside deaminase	S4VYZ2	Pandoravirus	7.4e-07	32.4
QBJ21648.1\|1648595_1648916_+	multidrug efflux SMR transporter	NA	NA	NA	NA
QBJ21649.1\|1648956_1649391_+	multidrug efflux SMR transporter	NA	NA	NA	NA
QBJ21650.1\|1649387_1650470_+	MFS transporter	NA	NA	NA	NA
QBJ21651.1\|1650699_1651587_+	polysaccharide deacetylase	NA	NA	NA	NA
QBJ22645.1\|1651741_1652892_-\|transposase	IS3-like element ISPfr10 family transposase	S5WIU1	Leptospira_phage	8.6e-38	37.5
QBJ21652.1\|1652982_1654251_-\|integrase	site-specific integrase	A0A2P1CI94	Actinomyces_phage	3.5e-56	37.6
1654616:1654634	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1850333 : 1888640

Staphylococcus_phage(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ21800.1\|1850333_1851641_-\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	2.9e-66	38.3
QBJ21801.1\|1851654_1853970_-	AAA family ATPase	NA	NA	NA	NA
QBJ21802.1\|1854039_1854567_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-24	41.5
QBJ21803.1\|1854607_1855318_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
QBJ21804.1\|1855314_1856760_-	argininosuccinate lyase	NA	NA	NA	NA
QBJ21805.1\|1856900_1858106_-	argininosuccinate synthase	NA	NA	NA	NA
QBJ21806.1\|1859904_1860336_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
QBJ21807.1\|1860445_1860940_-	arginine repressor	NA	NA	NA	NA
QBJ21808.1\|1860936_1861908_-	ornithine carbamoyltransferase	NA	NA	NA	NA
QBJ21809.1\|1861944_1863207_-	acetylornithine transaminase	B5LJF5	Mycobacterium_phage	6.6e-07	31.3
QBJ21810.1\|1863203_1864154_-	acetylglutamate kinase	NA	NA	NA	NA
QBJ21811.1\|1864164_1865370_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
QBJ22664.1\|1865414_1866464_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
QBJ21812.1\|1866668_1867646_+	quinone oxidoreductase	NA	NA	NA	NA
QBJ21813.1\|1867839_1868073_-	hypothetical protein	NA	NA	NA	NA
QBJ21814.1\|1869188_1870154_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.5e-23	33.9
QBJ21815.1\|1870146_1871394_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.8e-82	42.1
QBJ21816.1\|1871509_1872046_-\|transposase	IS30 family transposase	NA	NA	NA	NA
QBJ21817.1\|1872185_1872590_+	VOC family protein	NA	NA	NA	NA
QBJ21818.1\|1872994_1873804_-	ATP-binding protein	NA	NA	NA	NA
QBJ21819.1\|1873800_1875198_-\|transposase	transposase	NA	NA	NA	NA
QBJ21820.1\|1875205_1875802_-	recombinase family protein	I1ZBD6	Salisaeta_icosahedral_phage	4.3e-25	40.4
QBJ21821.1\|1875995_1876355_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QBJ21822.1\|1877271_1877853_-	hypothetical protein	A0A0R6PI79	Moraxella_phage	1.8e-23	38.0
QBJ21823.1\|1877984_1878545_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QBJ21824.1\|1878929_1879742_-	hypothetical protein	NA	NA	NA	NA
QBJ21825.1\|1879835_1880207_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
QBJ21826.1\|1880555_1881572_-	hypothetical protein	NA	NA	NA	NA
QBJ21827.1\|1881798_1882416_+	LysE family translocator	NA	NA	NA	NA
QBJ21828.1\|1882498_1882762_+	hypothetical protein	NA	NA	NA	NA
QBJ21829.1\|1882766_1883099_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
QBJ21830.1\|1883229_1883796_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	8.0e-29	47.5
QBJ21831.1\|1884759_1884975_+	hypothetical protein	NA	NA	NA	NA
QBJ22665.1\|1885403_1886417_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.0e-39	35.6
QBJ21832.1\|1887254_1888640_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	9.7e-36	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage