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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP036514 Hafnia alvei strain PCM_1220 chromosome, complete genome 5 crisprs WYL,DEDDh,csa3,cas3,DinG 0 8 6 0

Results visualization

1. CP036514
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036514_1 825567-825692 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036514_2 1128616-1129063 Orphan I-F
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036514_3 1142250-1142351 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036514_4 2784473-2784800 Orphan I-F
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036514_5 2860877-2861027 Orphan I-F
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP036514_2 2.1|1128644|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128644-1128675 32 NC_021594 Serratia plymuthica 4Rx13 plasmid p75, complete sequence 52447-52478 5 0.844
CP036514_2 2.1|1128644|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128644-1128675 32 NZ_CP049322 Caballeronia sp. SBC2 plasmid pSBC2-6, complete sequence 10516-10547 6 0.812
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP013108 Sinorhizobium americanum strain CFNEI 73 plasmid A, complete sequence 156779-156810 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP038854 Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence 532888-532919 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NC_019848 Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence 47095-47126 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 1305341-1305372 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 774774-774805 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 270239-270270 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP021827 Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence 232746-232777 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP021830 Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence 1131355-1131386 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP021813 Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence 439123-439154 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 672453-672484 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NZ_CP021805 Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence 314317-314348 7 0.781
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 1303678-1303709 7 0.781
CP036514_4 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR 2784621-2784652 32 NC_015583 Novosphingobium sp. PP1Y plasmid Mpl, complete sequence 888826-888857 7 0.781
CP036514_2 2.1|1128644|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128644-1128675 32 NC_014120 Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence 483585-483616 8 0.75
CP036514_2 2.6|1128944|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128944-1128975 32 NC_014309 Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome 1148090-1148121 8 0.75
CP036514_4 4.1|2784501|32|CP036514|CRISPRCasFinder,CRT 2784501-2784532 32 NZ_CP009067 Borreliella afzelii K78 plasmid lp38, complete sequence 9827-9858 8 0.75
CP036514_4 4.1|2784501|32|CP036514|CRISPRCasFinder,CRT 2784501-2784532 32 NC_017237 Borreliella afzelii PKo plasmid lp38, complete sequence 8537-8568 8 0.75
CP036514_4 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR 2784621-2784652 32 NC_011879 Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence 212087-212118 8 0.75
CP036514_4 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR 2784621-2784652 32 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 880057-880088 8 0.75
CP036514_4 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR 2784621-2784652 32 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 719679-719710 8 0.75
CP036514_2 2.2|1128704|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128704-1128735 32 NZ_AP017376 Stanieria sp. NIES-3757 plasmid plasmid1 DNA, complete genome 108008-108039 9 0.719
CP036514_2 2.5|1128884|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128884-1128915 32 NC_017426 Borreliella burgdorferi JD1 plasmid JD1 cp32-8, complete sequence 22705-22736 9 0.719
CP036514_2 2.5|1128884|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128884-1128915 32 NC_000953 Borreliella burgdorferi B31 plasmid cp32-8, complete sequence 22483-22514 9 0.719
CP036514_2 2.5|1128884|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128884-1128915 32 NZ_CP017203 Borreliella burgdorferi strain B331 plasmid B331_cp32_1, complete sequence 22714-22745 9 0.719
CP036514_2 2.7|1129004|32|CP036514|CRISPRCasFinder 1129004-1129035 32 MN602267 Bacteriophage DSS3_PM1, complete genome 4957-4988 9 0.719
CP036514_4 4.1|2784501|32|CP036514|CRISPRCasFinder,CRT 2784501-2784532 32 NZ_CP044103 Streptococcus dysgalactiae strain FDAARGOS_654 plasmid unnamed1 8321-8352 9 0.719
CP036514_4 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR 2784621-2784652 32 NZ_CP012185 Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence 196196-196227 9 0.719
CP036514_4 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR 2784621-2784652 32 NZ_CP012182 Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence 119551-119582 9 0.719
CP036514_2 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT 1128764-1128795 32 MF975721 Pseudomonas phage VW-6B, complete genome 25895-25926 10 0.688
CP036514_4 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR 2784621-2784652 32 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 638880-638911 10 0.688

1. spacer 2.1|1128644|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_021594 (Serratia plymuthica 4Rx13 plasmid p75, complete sequence) position: , mismatch: 5, identity: 0.844

agcgtacagaccggttctttcaattacacggc	CRISPR spacer
accgtacagaccggttcttttaattactcttc	Protospacer
* ******************.****** *  *

2. spacer 2.1|1128644|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049322 (Caballeronia sp. SBC2 plasmid pSBC2-6, complete sequence) position: , mismatch: 6, identity: 0.812

agcgtacagaccggttctttcaattacacggc	CRISPR spacer
acggtggagaccggttcgttcaattacacgtc	Protospacer
*  **. ********** ************ *

3. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013108 (Sinorhizobium americanum strain CFNEI 73 plasmid A, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct	CRISPR spacer
gtgcggaccgccgaaaatgccgcctccccgct	Protospacer
***** ******** ********* .   ***

4. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct	CRISPR spacer
gtgcggaccgccgaaaatgccgccgccacgct	Protospacer
***** ******** *********.. . ***

5. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

6. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

7. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

8. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

9. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

10. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

11. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

12. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

13. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

14. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcgtaccgccgataatgccgccatagagct-	CRISPR spacer
tagcgtaccgccgacaatgacgcca-agcgcga	Protospacer
  ************.**** ***** ** **  

15. spacer 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 7, identity: 0.781

tcagcggcaacgcgatccccatc--gagccggca	CRISPR spacer
ccagcggcaactcgatccccagcgtgatctgg--	Protospacer
.********** ********* *  ** *.**  

16. spacer 2.1|1128644|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_014120 (Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence) position: , mismatch: 8, identity: 0.75

agcgtacagaccggttctttcaattacacggc	CRISPR spacer
acggtacagaccggttccttcaactacagcca	Protospacer
*  **************.*****.****    

17. spacer 2.6|1128944|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 8, identity: 0.75

acgcaaccactgcgacaactcggcccataatt	CRISPR spacer
cctcagccactgcgacacctcggcccagcgct	Protospacer
 * **.*********** *********  ..*

18. spacer 4.1|2784501|32|CP036514|CRISPRCasFinder,CRT matches to NZ_CP009067 (Borreliella afzelii K78 plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.75

-tgcgaagcttacataactataatacttttttg	CRISPR spacer
atac-ttgcttacattactataataatttttat	Protospacer
 *.*   ******** ********* *****  

19. spacer 4.1|2784501|32|CP036514|CRISPRCasFinder,CRT matches to NC_017237 (Borreliella afzelii PKo plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.75

-tgcgaagcttacataactataatacttttttg	CRISPR spacer
atac-ttgcttacattactataataatttttat	Protospacer
 *.*   ******** ********* *****  

20. spacer 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 8, identity: 0.75

tcagcggcaacgcgatccccatcgagccggca	CRISPR spacer
ttcgcggcaacgccatcctcatcgagcccatg	Protospacer
*. ********** ****.********* ...

21. spacer 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.75

tcagcggcaacgcgatccccatcgagccggca	CRISPR spacer
gcacgatcaaggcgatccccatcgcgccggcg	Protospacer
 **  . *** ************* ******.

22. spacer 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcagcggcaacgcgatccccatcgagccggca	CRISPR spacer
tgagcggcaccgcgattcccatcgaacgcacc	Protospacer
* ******* ******.********.*  .* 

23. spacer 2.2|1128704|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017376 (Stanieria sp. NIES-3757 plasmid plasmid1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

gcccaagacacaacaaacgacgattacggaaa	CRISPR spacer
tacaaagttacaacaaacgacgattacagttc	Protospacer
  * *** .******************.*   

24. spacer 2.5|1128884|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_017426 (Borreliella burgdorferi JD1 plasmid JD1 cp32-8, complete sequence) position: , mismatch: 9, identity: 0.719

atctacgctatccattttggggttgccccaat	CRISPR spacer
ttctacgctatctattttggtgtttaaactag	Protospacer
 ***********.******* ***    * * 

25. spacer 2.5|1128884|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NC_000953 (Borreliella burgdorferi B31 plasmid cp32-8, complete sequence) position: , mismatch: 9, identity: 0.719

atctacgctatccattttggggttgccccaat	CRISPR spacer
ttctacgctatctattttggtgtttaaactag	Protospacer
 ***********.******* ***    * * 

26. spacer 2.5|1128884|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017203 (Borreliella burgdorferi strain B331 plasmid B331_cp32_1, complete sequence) position: , mismatch: 9, identity: 0.719

atctacgctatccattttggggttgccccaat	CRISPR spacer
ttctacgctatctattttggtgtttaaactag	Protospacer
 ***********.******* ***    * * 

27. spacer 2.7|1129004|32|CP036514|CRISPRCasFinder matches to MN602267 (Bacteriophage DSS3_PM1, complete genome) position: , mismatch: 9, identity: 0.719

ttcaaacaacagctctatcccggatgagcgaa	CRISPR spacer
ttgcaacaacagctacatcccggatgatattg	Protospacer
**  ********** .***********    .

28. spacer 4.1|2784501|32|CP036514|CRISPRCasFinder,CRT matches to NZ_CP044103 (Streptococcus dysgalactiae strain FDAARGOS_654 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

tgcgaagcttacataactataatacttttttg	CRISPR spacer
cttttatattacataactataatccctttttg	Protospacer
. .  *  *************** *.******

29. spacer 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 9, identity: 0.719

tcagcggcaacgcgatccccatcgagccggca	CRISPR spacer
acctgttcaacgcgatccccaccgagcaggcg	Protospacer
 *     **************.***** ***.

30. spacer 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 9, identity: 0.719

tcagcggcaacgcgatccccatcgagccggca	CRISPR spacer
acctgttcaacgcgatccccaccgagcaggcg	Protospacer
 *     **************.***** ***.

31. spacer 2.3|1128764|32|CP036514|PILER-CR,CRISPRCasFinder,CRT matches to MF975721 (Pseudomonas phage VW-6B, complete genome) position: , mismatch: 10, identity: 0.688

gtgcgtaccgccgataatgccgccatagagct	CRISPR spacer
actggcaccgccgttaatgccgccacagacac	Protospacer
..  *.******* ***********.***  .

32. spacer 4.3|2784621|32|CP036514|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 10, identity: 0.688

tcagcggcaacgcgatccccatcgagccggca	CRISPR spacer
aggccggcgacgcgatccccatccagcagcag	Protospacer
  . ****.************** *** *  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1051365 : 1079890 38 Cronobacter_phage(86.67%) portal,tail,integrase,terminase,holin,head,capsid attL 1051232:1051279|attR 1081755:1081802
DBSCAN-SWA_2 1587621 : 1599185 10 Escherichia_phage(62.5%) tRNA NA
DBSCAN-SWA_3 1669472 : 1749351 60 uncultured_Caudovirales_phage(33.33%) protease,plate NA
DBSCAN-SWA_4 1763476 : 1809376 66 Cronobacter_phage(32.0%) integrase,terminase,holin,head,coat attL 1763417:1763467|attR 1809657:1809707
DBSCAN-SWA_5 2166541 : 2180441 14 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_6 2966012 : 3042719 82 Enterobacteria_phage(20.59%) portal,capsid,terminase,tRNA,holin,protease,head,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage