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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026505 Lactobacillus plantarum strain NCIMB700965.EF.A chromosome, complete genome 0 crisprs DinG,DEDDh,cas3,csa3,WYL 0 0 12 0
CP026508 Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed3, complete sequence 1 crisprs NA 0 1 0 0
CP026506 Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed1, complete sequence 0 crisprs csa3 0 0 1 0
CP026507 Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed2, complete sequence 0 crisprs NA 0 0 0 0
CP026510 Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed5, complete sequence 0 crisprs NA 0 0 0 0
CP026509 Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed4, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP026508
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026508_1 5567-5676 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP026508_1 1.1|5601|42|CP026508|CRISPRCasFinder 5601-5642 42 NZ_CP026508 Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed3, complete sequence 5601-5642 0 1.0
CP026508_1 1.1|5601|42|CP026508|CRISPRCasFinder 5601-5642 42 NZ_CP023494 Lactobacillus plantarum strain NCIMB 700965 plasmid unamed4, complete sequence 19689-19730 0 1.0

1. spacer 1.1|5601|42|CP026508|CRISPRCasFinder matches to NZ_CP026508 (Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed3, complete sequence) position: , mismatch: 0, identity: 1.0

atttcatcaggttgtctaaggttattcaaccaactagactat	CRISPR spacer
atttcatcaggttgtctaaggttattcaaccaactagactat	Protospacer
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2. spacer 1.1|5601|42|CP026508|CRISPRCasFinder matches to NZ_CP023494 (Lactobacillus plantarum strain NCIMB 700965 plasmid unamed4, complete sequence) position: , mismatch: 0, identity: 1.0

atttcatcaggttgtctaaggttattcaaccaactagactat	CRISPR spacer
atttcatcaggttgtctaaggttattcaaccaactagactat	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP026505
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 49314 : 57927 11 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_2 254747 : 309932 39 unidentified_phage(40.0%) protease,transposase NA
DBSCAN-SWA_3 451122 : 512585 49 Bacillus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_4 993054 : 1053535 56 unidentified_phage(12.5%) transposase NA
DBSCAN-SWA_5 1205845 : 1303582 101 Lactobacillus_phage(66.0%) tRNA,transposase,head,holin,capsid,portal,protease,tail,integrase,terminase attL 1248755:1248772|attR 1310515:1310532
DBSCAN-SWA_6 1594501 : 1657864 78 Lactobacillus_phage(41.03%) plate,transposase,head,holin,capsid,portal,tail,integrase,terminase attL 1642907:1642928|attR 1657147:1657168
DBSCAN-SWA_7 1993251 : 2057906 51 Bacillus_phage(33.33%) protease,transposase NA
DBSCAN-SWA_8 2129898 : 2195629 54 unidentified_phage(23.08%) transposase NA
DBSCAN-SWA_9 2241936 : 2297402 49 Erysipelothrix_phage(18.18%) holin,tRNA,transposase,bacteriocin NA
DBSCAN-SWA_10 2387301 : 2448826 57 unidentified_phage(10.0%) transposase NA
DBSCAN-SWA_11 2787675 : 2844967 58 unidentified_phage(30.0%) transposase,protease NA
DBSCAN-SWA_12 2861616 : 2895652 30 Bacillus_phage(28.57%) tRNA,bacteriocin,protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP026506
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 18952 : 61855 38 Streptococcus_phage(16.67%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage