CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025280	Salmonella enterica subsp. enterica strain USDA-ARS-USMARC-60983 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas3,csa3,RT,DEDDh,DinG,cas14j	1	4	9	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025280_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025280_2

986430-986904

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

cas3

The CRISPR arrays of CP025280_2

>merge|CP025280|2|986430-986904|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGACGTCCGCCCGGAGGCGCTGCGACGTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGTTTATTTCCCATCCCTAACAGCCGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTACGAAGTTCTTTACCTGTACTTGGCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGCGCGGGATCATACCGTGGGATAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGGTGTCGTCAGTTATTTTATCCAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTAAACGTTCCGTAAGCGCAAAGGCTAGTAGTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP025280|2|1|986430-986843|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP025280|2|2|986430-986904|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCAGCGGGGATAAACCGTGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAAACGTTCCGTAAGCGCAAAGGCTAGTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

>CP025280|2|1|986430-986904|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGACGTCCGCCCGGAGGCGCTGCGACGTTTTGTGTTCCCCGCGCCAGCGG
GGATAAACCGTGCCAGCGGGGATAAACCG	TGCCCTTTCCGCCGACTCACCGACGCGCCCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTTATTTCCCATCCCTAACAGCCGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTACGAAGTTCTTTACCTGTACTTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGCGCGGGATCATACCGTGGGATAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGGTGTCGTCAGTTATTTTATCCAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAAACGTTCCGTAAGCGCAAAGGCTAGTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP025280.1\|QBJ36333.1\|990483_992196_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP025280.1\|QBJ36327.1\|982410_984048_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP025280.1\|QBJ36324.1\|980008_980365_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP025280.1\|QBJ36336.1\|994430_996008_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP025280.1\|QBJ36338.1\|997421_998330_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP025280.1\|QBJ36325.1\|980330_980627_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP025280.1\|QBJ36321.1\|973528_976285_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP025280.1\|QBJ36322.1\|976342_977638_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP025280.1\|QBJ36331.1\|987886_988249_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP025280.1\|QBJ36329.1\|985564_986236_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP025280.1\|QBJ36328.1\|984130_985429_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP025280.1\|QBJ36335.1\|993093_994047_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025280.1\|QBJ36323.1\|977689_979924_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP025280.1\|QBJ36326.1\|981382_982183_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP025280.1\|QBJ36330.1\|987001_987799_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP025280.1\|QBJ36334.1\|992271_993006_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP025280.1\|QBJ36332.1\|988684_990484_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP025280.1\|QBJ36337.1\|996124_997171_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP025280.1\|QBJ39750.1\|988177_988348_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP025280.1\|QBJ36320.1\|972342_973485_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840

Protein	Function_ID	Function_description	E-value
CP025280.1\|QBJ36333.1\|990483_992196_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP025280.1\|QBJ36327.1\|982410_984048_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP025280.1\|QBJ36324.1\|980008_980365_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.86759e-20
CP025280.1\|QBJ36336.1\|994430_996008_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.36489e-90
CP025280.1\|QBJ36338.1\|997421_998330_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP025280.1\|QBJ36325.1\|980330_980627_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
CP025280.1\|QBJ36321.1\|973528_976285_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP025280.1\|QBJ36322.1\|976342_977638_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP025280.1\|QBJ36331.1\|987886_988249_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP025280.1\|QBJ36329.1\|985564_986236_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP025280.1\|QBJ36328.1\|984130_985429_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025280.1\|QBJ36335.1\|993093_994047_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025280.1\|QBJ36323.1\|977689_979924_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP025280.1\|QBJ36326.1\|981382_982183_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.77354e-159
CP025280.1\|QBJ36330.1\|987001_987799_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.92352e-102
CP025280.1\|QBJ36334.1\|992271_993006_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
CP025280.1\|QBJ36332.1\|988684_990484_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP025280.1\|QBJ36337.1\|996124_997171_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP025280.1\|QBJ36320.1\|972342_973485_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0

>CP025280.1|QBJ36329.1|985564_986236_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP025280.1|QBJ36328.1|984130_985429_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP025280.1|QBJ36327.1|982410_984048_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>CP025280.1|QBJ36326.1|981382_982183_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNYQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVGKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP025280.1|QBJ36325.1|980330_980627_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP025280.1|QBJ36324.1|980008_980365_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPGENGKINAKGQ
>CP025280.1|QBJ36323.1|977689_979924_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP025280.1|QBJ36322.1|976342_977638_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSITLQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP025280.1|QBJ36321.1|973528_976285_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP025280.1|QBJ36320.1|972342_973485_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIVRDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP025280.1|QBJ36330.1|987001_987799_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP025280.1|QBJ36331.1|987886_988249_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP025280.1|QBJ39750.1|988177_988348_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP025280.1|QBJ36332.1|988684_990484_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRVPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP025280.1|QBJ36333.1|990483_992196_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIESGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP025280.1|QBJ36334.1|992271_993006_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025280.1|QBJ36335.1|993093_994047_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP025280.1|QBJ36336.1|994430_996008_-|CRISPR-associated-helicase-Cas3'
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISNVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP025280.1|QBJ36337.1|996124_997171_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP025280.1|QBJ36338.1|997421_998330_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF

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Crispr_ID: CP025280_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025280_3

996021-996108

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP025280_3

>merge|CP025280|3|996021-996108|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTAACGGATTAGGTAGTAACCTGAAACAGGGTGTTCCCCGCGCCAGCGGGGATAAAC

>CP025280|3|3|996021-996108|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCCTAACGGATTAGGTAGTAACCTGAAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025280.1\|QBJ36342.1\|1000935_1001247_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP025280.1\|QBJ36333.1\|990483_992196_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP025280.1\|QBJ36336.1\|994430_996008_-\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP025280.1\|QBJ36338.1\|997421_998330_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP025280.1\|QBJ36331.1\|987886_988249_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP025280.1\|QBJ36339.1\|998339_999779_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP025280.1\|QBJ36345.1\|1002451_1003501_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP025280.1\|QBJ36337.1\|996124_997171_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP025280.1\|QBJ36328.1\|984130_985429_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP025280.1\|QBJ36335.1\|993093_994047_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025280.1\|QBJ36343.1\|1001265_1001976_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP025280.1\|QBJ36344.1\|1001975_1002455_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP025280.1\|QBJ36330.1\|987001_987799_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP025280.1\|QBJ36334.1\|992271_993006_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP025280.1\|QBJ36332.1\|988684_990484_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP025280.1\|QBJ36329.1\|985564_986236_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP025280.1\|QBJ39750.1\|988177_988348_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP025280.1\|QBJ36340.1\|999765_1000371_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP025280.1\|QBJ36341.1\|1000388_1000745_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP025280.1\|QBJ36346.1\|1003481_1004243_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
CP025280.1\|QBJ36342.1\|1000935_1001247_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP025280.1\|QBJ36333.1\|990483_992196_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP025280.1\|QBJ36336.1\|994430_996008_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.36489e-90
CP025280.1\|QBJ36338.1\|997421_998330_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP025280.1\|QBJ36331.1\|987886_988249_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP025280.1\|QBJ36339.1\|998339_999779_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP025280.1\|QBJ36345.1\|1002451_1003501_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP025280.1\|QBJ36337.1\|996124_997171_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP025280.1\|QBJ36328.1\|984130_985429_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025280.1\|QBJ36335.1\|993093_994047_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025280.1\|QBJ36343.1\|1001265_1001976_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP025280.1\|QBJ36344.1\|1001975_1002455_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP025280.1\|QBJ36330.1\|987001_987799_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.92352e-102
CP025280.1\|QBJ36334.1\|992271_993006_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
CP025280.1\|QBJ36332.1\|988684_990484_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP025280.1\|QBJ36329.1\|985564_986236_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
CP025280.1\|QBJ36340.1\|999765_1000371_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
CP025280.1\|QBJ36341.1\|1000388_1000745_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP025280.1\|QBJ36346.1\|1003481_1004243_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146

>CP025280.1|QBJ36336.1|994430_996008_-|CRISPR-associated-helicase-Cas3'
MSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISNVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>CP025280.1|QBJ36335.1|993093_994047_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>CP025280.1|QBJ36334.1|992271_993006_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025280.1|QBJ36333.1|990483_992196_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIESGRILDYPGRPLKTGLLEIAKVHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP025280.1|QBJ36332.1|988684_990484_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRVPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>CP025280.1|QBJ39750.1|988177_988348_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP025280.1|QBJ36331.1|987886_988249_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP025280.1|QBJ36330.1|987001_987799_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP025280.1|QBJ36329.1|985564_986236_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP025280.1|QBJ36328.1|984130_985429_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP025280.1|QBJ36337.1|996124_997171_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP025280.1|QBJ36338.1|997421_998330_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP025280.1|QBJ36339.1|998339_999779_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP025280.1|QBJ36340.1|999765_1000371_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP025280.1|QBJ36341.1|1000388_1000745_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP025280.1|QBJ36342.1|1000935_1001247_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP025280.1|QBJ36343.1|1001265_1001976_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP025280.1|QBJ36344.1|1001975_1002455_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP025280.1|QBJ36345.1|1002451_1003501_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNACNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP025280.1|QBJ36346.1|1003481_1004243_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	CP025280.1	2680460-2680491	0	1.0

1. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to position: 2680460-2680491, mismatch: 0, identity: 1.0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NC_010392	Phage Gifsy-1, complete genome	8230-8261	0	1.0
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	9440-9471	1	0.969
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	65573-65604	1	0.969
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	87586-87617	1	0.969
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NC_010393	Phage Gifsy-2, complete genome	38576-38607	1	0.969
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_AP020327	Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p1-JPH1	66325-66356	5	0.844
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	232048-232079	7	0.781
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	88878-88909	7	0.781
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	7992-8023	7	0.781
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	816560-816591	7	0.781
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	331601-331632	8	0.75
CP025280_2	2.5\|986722\|32\|CP025280\|PILER-CR,CRISPRCasFinder,CRT	986722-986753	32	MN807249	Mycobacterium phage Megiddo, complete genome	40628-40659	8	0.75
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	LR606152	Rhizobium sp. Q54 genome assembly, plasmid: 9	87306-87337	9	0.719
CP025280_2	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	NZ_LR134466	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence	6692-6723	9	0.719
CP025280_2	2.9\|986539\|32\|CP025280\|CRT	986539-986570	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	321477-321508	9	0.719
CP025280_2	2.4\|986661\|32\|CP025280\|PILER-CR,CRISPRCasFinder,CRT	986661-986692	32	GQ478088	Enterococcus phage phiFL4A, complete genome	32488-32519	10	0.688
CP025280_2	2.4\|986661\|32\|CP025280\|PILER-CR,CRISPRCasFinder,CRT	986661-986692	32	MG945146	UNVERIFIED: Microviridae sp. isolate 192-18011, partial genome	2565-2596	10	0.688

1. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

2. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

3. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

4. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

5. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 1, identity: 0.969

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcggcgtttt	Protospacer
*************************.******

6. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_AP020327 (Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p1-JPH1) position: , mismatch: 5, identity: 0.844

acgacgtccgcccggaggcgctg--cgacgtttt	CRISPR spacer
acgacgtccgcacggtggcgctgtccgacgat--	Protospacer
*********** *** *******  ***** *

7. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

8. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

9. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

10. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.781

acgacgtccgcccggaggcgctgcgacgtttt--	CRISPR spacer
acgacatccgctcggaggcgct--gaccttcgcg	Protospacer
*****.*****.**********  *** **.

11. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 8, identity: 0.75

acgacgtccgcccggaggcgctgcgacgtttt-	CRISPR spacer
tggacgtcctcccggaggtgctgcg-cgcgctg	Protospacer
  ******* ********.****** **. .*

12. spacer 2.5|986722|32|CP025280|PILER-CR,CRISPRCasFinder,CRT matches to MN807249 (Mycobacterium phage Megiddo, complete genome) position: , mismatch: 8, identity: 0.75

acgtggcgcgggatcataccgtgggataaaac	CRISPR spacer
gtgtggcgcggcatcatcccgtgggtcaagcc	Protospacer
..********* ***** ******* .**. *

13. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to LR606152 (Rhizobium sp. Q54 genome assembly, plasmid: 9) position: , mismatch: 9, identity: 0.719

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
cgcccggccgccaggaggcgctgcgacgccgt	Protospacer
    ** ***** ***************.. *

14. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to NZ_LR134466 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence) position: , mismatch: 9, identity: 0.719

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
gcagcgaccgcccggaggcgctgcgccgcacc	Protospacer
.*..** ****************** **. ..

15. spacer 2.9|986539|32|CP025280|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccctttccgccgactcaccgacgcgcccgg	CRISPR spacer
gaccgccgccgccgactcaccatcgcgcccgc	Protospacer
 .** .. *************. ********

16. spacer 2.4|986661|32|CP025280|PILER-CR,CRISPRCasFinder,CRT matches to GQ478088 (Enterococcus phage phiFL4A, complete genome) position: , mismatch: 10, identity: 0.688

gcttacgaagttctttacctgtacttggcgca	CRISPR spacer
tattacgcaggtctttacctgtacttttttag	Protospacer
  ***** ** ***************  .  .

17. spacer 2.4|986661|32|CP025280|PILER-CR,CRISPRCasFinder,CRT matches to MG945146 (UNVERIFIED: Microviridae sp. isolate 192-18011, partial genome) position: , mismatch: 10, identity: 0.688

gcttacgaagttctttacctgtacttggcgca	CRISPR spacer
agaaatatagttctttgcctatacttggcgct	Protospacer
.   *.. ********.***.**********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

670892 : 707258

Escherichia_phage(26.67%)

capsid,terminase,integrase,holin,tRNA,head,tail,plate,portal

attL 660116:660139|attR 709544:709567

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
660116:660139	attL	NA	NA	NA	NA
QBJ36022.1\|670892_671930_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	8.8e-175	87.1
QBJ36023.1\|671929_672505_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	8.9e-68	66.0
QBJ36024.1\|672637_672901_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
QBJ36025.1\|672931_673441_+	hypothetical protein	A0A0M4QWN1	Salmonella_phage	4.3e-90	99.4
QBJ36026.1\|673448_673676_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	7.3e-34	90.7
QBJ36027.1\|673662_673863_+	hypothetical protein	A0A0M5M7U3	Salmonella_phage	3.7e-29	92.4
QBJ36028.1\|673929_674163_+	DUF2732 domain-containing protein	Q6K1F6	Salmonella_virus	1.1e-24	77.9
QBJ36029.1\|674162_674390_+	hypothetical protein	A0A1S6L007	Salmonella_phage	3.1e-24	70.7
QBJ36030.1\|674386_674695_+	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	2.1e-07	45.9
QBJ36031.1\|674708_676949_+	replication endonuclease	A0A0M3ULG0	Salmonella_phage	0.0e+00	92.2
QBJ36032.1\|677065_677506_+	DinI family protein	A0A218M4I0	Erwinia_phage	5.4e-65	92.0
QBJ36033.1\|677788_678088_+	hypothetical protein	NA	NA	NA	NA
QBJ36034.1\|678124_678433_+	XRE family transcriptional regulator	E5E3S9	Burkholderia_phage	2.2e-12	39.2
QBJ36035.1\|678410_679361_+	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	2.3e-36	37.7
QBJ36036.1\|679500_679932_-	hypothetical protein	S4TUD6	Salmonella_phage	1.4e-70	95.1
QBJ36037.1\|679930_680125_+	hypothetical protein	S4TRZ0	Salmonella_phage	3.4e-24	92.2
QBJ36038.1\|680155_680425_-	hypothetical protein	Q2P9X2	Enterobacteria_phage	1.1e-25	82.6
QBJ36039.1\|680644_681682_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	2.0e-163	79.3
QBJ36040.1\|681681_683451_-	oxidoreductase	Q9T0R3	Escherichia_phage	1.5e-286	81.2
QBJ36041.1\|683615_684479_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	2.2e-118	76.3
QBJ36042.1\|684510_685671_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	9.6e-130	62.8
QBJ36043.1\|685674_686433_+\|terminase	terminase	Q94MJ2	Enterobacteria_phage	2.3e-79	66.3
QBJ36044.1\|686530_687031_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
QBJ36045.1\|687030_687234_+\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
QBJ36046.1\|687224_687446_+	primosomal protein	A0A218M4L5	Erwinia_phage	5.1e-24	71.2
QBJ36047.1\|687429_687939_+	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
QBJ36048.1\|687935_688349_+	protein lysB	O80310	Escherichia_phage	1.3e-36	60.6
QBJ36049.1\|688248_688494_+\|holin	holin	S4TNY4	Salmonella_phage	2.5e-27	73.1
QBJ36050.1\|688456_688924_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	1.1e-55	69.7
QBJ36051.1\|688916_689366_+	phage virion morphogenesis protein	O80313	Escherichia_phage	1.0e-50	69.4
QBJ36052.1\|689434_690076_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.8e-96	82.2
QBJ36053.1\|690072_690420_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	2.8e-40	70.4
QBJ36054.1\|690424_691333_+\|plate	baseplate assembly protein	Q37840	Escherichia_phage	2.6e-138	83.8
QBJ36055.1\|691325_691859_+\|tail	phage tail protein I	Q37841	Escherichia_phage	5.6e-93	88.6
QBJ36056.1\|691866_693612_+\|tail	phage tail protein	Q37842	Escherichia_phage	9.2e-92	75.5
QBJ36057.1\|693614_694139_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
QBJ36058.1\|694268_695456_+\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.1e-189	82.8
QBJ36059.1\|695468_695987_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.0e-71	75.6
QBJ36060.1\|696049_696331_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.7e-30	79.1
QBJ36061.1\|696363_696483_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
QBJ36062.1\|696475_698905_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	2.3e-266	70.6
QBJ36063.1\|698916_699381_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	5.9e-62	75.5
QBJ36064.1\|699383_700577_+	hypothetical protein	Q6K1G4	Salmonella_virus	2.3e-166	78.4
QBJ36065.1\|700616_700835_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.6e-33	86.1
QBJ36066.1\|701193_701700_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
QBJ36067.1\|701823_703806_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
QBJ36068.1\|703820_705566_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
QBJ36069.1\|705801_706017_-	30S ribosomal protein S21	NA	NA	NA	NA
QBJ36070.1\|706244_707258_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.2e-109	59.5
709544:709567	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1177691 : 1270623

Cronobacter_phage(53.66%)

capsid,terminase,integrase,holin,tRNA,head,tail,portal

attL 1215285:1215300|attR 1244662:1244677

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ36516.1\|1177691_1178921_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	1.5e-205	86.1
QBJ39754.1\|1179519_1180683_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
QBJ36517.1\|1180690_1182871_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
QBJ36518.1\|1182867_1184277_-	type I secretion protein TolC	NA	NA	NA	NA
QBJ36519.1\|1184341_1195816_-	Ig-like domain repeat protein	NA	NA	NA	NA
QBJ39755.1\|1196430_1196913_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
QBJ36520.1\|1197062_1197539_+	ubiquinone-binding protein	NA	NA	NA	NA
QBJ36521.1\|1197528_1197819_+	RnfH family protein	NA	NA	NA	NA
QBJ36522.1\|1197984_1198323_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
QBJ36523.1\|1198471_1200133_-	DNA repair protein RecN	NA	NA	NA	NA
QBJ36524.1\|1200218_1201097_-	NAD(+) kinase	NA	NA	NA	NA
QBJ39756.1\|1201028_1201223_+	molecular chaperone GrpE	NA	NA	NA	NA
QBJ36525.1\|1201219_1201810_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
QBJ36526.1\|1201844_1202450_-	cytoplasmic protein	NA	NA	NA	NA
QBJ36527.1\|1202570_1203812_-	magnesium/cobalt efflux protein	NA	NA	NA	NA
QBJ36528.1\|1203876_1204668_-	inner membrane protein YpjD	NA	NA	NA	NA
QBJ36529.1\|1204613_1204910_-	hypothetical protein	NA	NA	NA	NA
QBJ36530.1\|1204833_1206195_+	signal recognition particle protein	NA	NA	NA	NA
QBJ39757.1\|1206447_1206696_+	30S ribosomal protein S16	NA	NA	NA	NA
QBJ36531.1\|1206714_1207263_+	ribosome maturation factor RimM	NA	NA	NA	NA
QBJ36532.1\|1207307_1208075_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
QBJ36533.1\|1208115_1208463_+	50S ribosomal protein L19	NA	NA	NA	NA
QBJ36534.1\|1208619_1209840_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
QBJ36535.1\|1209832_1210351_-	DUF4154 domain-containing protein	NA	NA	NA	NA
QBJ36536.1\|1210790_1211861_+	phospho-2-dehydro-3-deoxyheptonate aldolase Tyr-sensitive	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
QBJ36537.1\|1211870_1212992_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
QBJ36538.1\|1213049_1213958_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
QBJ36539.1\|1213918_1215079_-	prephenate dehydratase	NA	NA	NA	NA
QBJ39758.1\|1215178_1215226_-	hypothetical protein	NA	NA	NA	NA
1215285:1215300	attL	NA	NA	NA	NA
QBJ36540.1\|1215389_1216409_-\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	1.4e-108	58.2
QBJ36541.1\|1216448_1216754_-	XRE family transcriptional regulator	A0A0M5M1I9	Salmonella_phage	1.6e-15	47.5
QBJ36542.1\|1216851_1217190_+	hypothetical protein	NA	NA	NA	NA
QBJ36543.1\|1217215_1217548_+	hypothetical protein	NA	NA	NA	NA
QBJ36544.1\|1217557_1218127_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.6e-43	46.3
QBJ36545.1\|1218129_1218348_+	hypothetical protein	NA	NA	NA	NA
QBJ36546.1\|1218386_1221044_+	bifunctional DNA primase/helicase	A0A077K8T2	Ralstonia_phage	1.2e-244	47.5
QBJ36547.1\|1221071_1221395_-	transcriptional regulator	F1BUM8	Cronobacter_phage	1.3e-36	73.1
QBJ36548.1\|1221394_1222414_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.3e-135	68.5
QBJ36549.1\|1222410_1224195_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.8e-247	69.7
QBJ36550.1\|1224252_1225242_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.5e-46	52.3
QBJ36551.1\|1225276_1226305_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.7e-133	71.6
QBJ36552.1\|1226316_1227015_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.6e-63	52.6
QBJ36553.1\|1227113_1227566_+\|head	head completion protein	F1BUL8	Cronobacter_phage	1.2e-48	64.7
QBJ36554.1\|1227562_1228045_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-37	48.7
QBJ36555.1\|1228041_1228746_+	hypothetical protein	F1BUL6	Cronobacter_phage	4.0e-70	59.5
QBJ36556.1\|1228742_1229870_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	8.1e-174	82.9
QBJ36557.1\|1229866_1230322_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	1.7e-58	71.5
QBJ36558.1\|1230334_1230631_+\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
QBJ36559.1\|1230627_1230969_+	hypothetical protein	F1BUL3	Cronobacter_phage	2.2e-50	91.1
QBJ36560.1\|1230968_1231301_+	hypothetical protein	F1BUL2	Cronobacter_phage	4.4e-35	70.0
QBJ36561.1\|1231227_1231461_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.7e-30	83.1
QBJ36562.1\|1231438_1231705_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.4e-20	61.0
QBJ36563.1\|1231892_1233860_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.9e-271	70.7
QBJ36564.1\|1233856_1234186_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
QBJ36565.1\|1234182_1235367_+	hypothetical protein	F1BUK6	Cronobacter_phage	5.1e-179	78.6
QBJ36566.1\|1235353_1235947_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.4e-89	82.1
QBJ36567.1\|1235956_1237969_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
QBJ36568.1\|1237971_1238502_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
QBJ36569.1\|1238491_1239217_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.8e-68	56.4
QBJ36570.1\|1239188_1239734_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.5e-58	71.4
QBJ36571.1\|1239733_1241437_+	hypothetical protein	F1BUJ7	Cronobacter_phage	1.7e-223	81.3
QBJ36572.1\|1242554_1244027_+	hypothetical protein	NA	NA	NA	NA
QBJ36573.1\|1244162_1244549_-	hypothetical protein	NA	NA	NA	NA
QBJ36574.1\|1244706_1245045_-	ribosomal subunit interface protein	NA	NA	NA	NA
1244662:1244677	attR	NA	NA	NA	NA
QBJ36575.1\|1245316_1246054_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
QBJ36576.1\|1246185_1247166_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
QBJ36577.1\|1247162_1247894_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
QBJ36578.1\|1248023_1250597_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	3.4e-127	35.5
QBJ36579.1\|1250792_1250993_-	hypothetical protein	NA	NA	NA	NA
QBJ36580.1\|1256423_1256879_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	8.6e-34	49.3
QBJ36581.1\|1256982_1258284_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
QBJ36582.1\|1258280_1258604_-	hypothetical protein	NA	NA	NA	NA
QBJ36583.1\|1258648_1260004_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
QBJ36584.1\|1260118_1262779_-	protein lysine acetyltransferase Pat	NA	NA	NA	NA
QBJ36585.1\|1262832_1263513_-	DTW domain-containing protein	NA	NA	NA	NA
QBJ36586.1\|1263585_1264005_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
QBJ36587.1\|1264208_1265246_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
QBJ36588.1\|1265361_1266051_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
QBJ36589.1\|1266369_1266753_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
QBJ36590.1\|1266814_1267402_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
QBJ39759.1\|1267504_1268404_+	LysR family transcriptional regulator	NA	NA	NA	NA
QBJ36591.1\|1268421_1269756_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
QBJ36592.1\|1269885_1270623_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1722126 : 1731297

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ36997.1\|1722126_1723074_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
QBJ36998.1\|1723057_1723789_+	ABC transporter permease	NA	NA	NA	NA
QBJ36999.1\|1723769_1723877_-	hypothetical protein	NA	NA	NA	NA
QBJ37000.1\|1723936_1724668_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
QBJ37001.1\|1724890_1726576_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
QBJ37002.1\|1726572_1727292_+	DNA-binding response regulator	NA	NA	NA	NA
QBJ37003.1\|1727338_1727806_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
QBJ37004.1\|1727862_1728393_-	DUF1307 domain-containing protein	NA	NA	NA	NA
QBJ37005.1\|1728564_1729023_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
QBJ37006.1\|1729263_1731297_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	27.6

DBSCAN-SWA_4

1798489 : 1808996

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ37061.1\|1798489_1799893_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	26.5
QBJ37062.1\|1800070_1800964_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
QBJ37063.1\|1801340_1802426_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
QBJ37064.1\|1802425_1803325_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.7e-30	36.0
QBJ37065.1\|1803372_1804251_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-108	65.5
QBJ37066.1\|1804251_1804803_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
QBJ37067.1\|1804808_1805783_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QBJ37068.1\|1805798_1806572_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QBJ37069.1\|1806576_1807656_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
QBJ37070.1\|1807682_1808996_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1891538 : 1898774

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ37152.1\|1891538_1891958_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
QBJ37153.1\|1891960_1893229_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.4e-227	92.4
QBJ37154.1\|1893683_1893896_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
QBJ39776.1\|1893906_1894095_+	cold-shock protein	NA	NA	NA	NA
QBJ37155.1\|1894355_1895534_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	2.5e-109	57.0
QBJ37156.1\|1896183_1896483_+	hypothetical protein	NA	NA	NA	NA
QBJ37157.1\|1896574_1897270_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
QBJ37158.1\|1897343_1898774_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2183484 : 2190141

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ37442.1\|2183484_2184291_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	4.6e-14	27.4
QBJ37443.1\|2184292_2185285_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
QBJ37444.1\|2185284_2186175_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
QBJ37445.1\|2186997_2187720_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	4.3e-35	38.9
QBJ37446.1\|2188190_2188373_+	hypothetical protein	S4TSR3	Salmonella_phage	1.0e-22	77.6
QBJ37447.1\|2188622_2188763_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	6.5e-09	77.1
QBJ37448.1\|2188801_2189101_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	3.2e-13	54.3
QBJ37449.1\|2189027_2189453_+	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
QBJ37450.1\|2189826_2190141_+	recombinase family protein	A0A1S6L009	Salmonella_phage	4.3e-40	86.1

DBSCAN-SWA_7

2664630 : 2671868

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ37915.1\|2664630_2664870_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
QBJ39808.1\|2665749_2666559_+	cytolethal distending toxin subunit B	A5LH53	Enterobacteria_phage	2.1e-62	50.0
QBJ37916.1\|2666631_2667009_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
QBJ37917.1\|2667156_2667699_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
QBJ37918.1\|2667882_2668611_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.2e-61	52.5
QBJ37919.1\|2668627_2669041_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7
QBJ37920.1\|2670085_2671210_-	DUF3626 domain-containing protein	NA	NA	NA	NA
QBJ37921.1\|2671655_2671868_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7

DBSCAN-SWA_8

2677146 : 2724964

Enterobacteria_phage(38.1%)

capsid,terminase,integrase,transposase,tRNA,tail,head,portal,lysis

attL 2671604:2671619|attR 2720865:2720880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2671604:2671619	attL	NA	NA	NA	NA
QBJ37925.1\|2677146_2677263_+\|tail	phage tail protein	NA	NA	NA	NA
QBJ37926.1\|2677453_2677654_+	phage virulence factor	NA	NA	NA	NA
QBJ37927.1\|2677751_2678336_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-87	84.8
QBJ37928.1\|2678335_2680777_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	7.3e-87	62.0
QBJ37929.1\|2680830_2681073_-	hypothetical protein	NA	NA	NA	NA
QBJ37930.1\|2681111_2684474_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.9
QBJ37931.1\|2684535_2685183_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
QBJ37932.1\|2685080_2685818_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
QBJ37933.1\|2685824_2686523_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	7.9e-103	75.4
QBJ37934.1\|2686532_2686862_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	7.3e-43	71.3
QBJ37935.1\|2686864_2689960_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.3e-277	61.6
QBJ37936.1\|2689931_2690270_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
QBJ37937.1\|2690266_2690662_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
QBJ37938.1\|2690712_2691459_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
QBJ37939.1\|2691466_2691868_-\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
QBJ37940.1\|2691856_2693107_+\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	1.6e-215	99.2
QBJ37941.1\|2693155_2693734_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.7e-82	80.7
QBJ37942.1\|2693761_2694145_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
QBJ37943.1\|2694155_2694521_-	DNA packaging protein	NA	NA	NA	NA
QBJ37944.1\|2694578_2695607_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
QBJ37945.1\|2695661_2696009_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
QBJ37946.1\|2696021_2697518_-	scaffolding protein	A0A0K2FI53	Enterobacteria_phage	4.3e-98	52.7
QBJ37947.1\|2697507_2699088_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
QBJ37948.1\|2699084_2699288_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	9.5e-17	72.3
QBJ37949.1\|2699271_2701203_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	1.8e-258	65.7
QBJ37950.1\|2701174_2701720_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
QBJ37951.1\|2701764_2701971_-	hypothetical protein	NA	NA	NA	NA
QBJ37952.1\|2702005_2702407_+	inhibitor of g-type lysozyme	NA	NA	NA	NA
QBJ37953.1\|2702633_2703098_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.8e-58	84.7
QBJ37954.1\|2703198_2703738_-	lysozyme	S5MQK2	Escherichia_phage	4.4e-77	74.1
QBJ39809.1\|2703715_2704018_-	alpha/beta hydrolase	NA	NA	NA	NA
QBJ39810.1\|2704267_2704723_+	DUF2441 domain-containing protein	NA	NA	NA	NA
QBJ37955.1\|2704734_2704953_-	hypothetical protein	NA	NA	NA	NA
QBJ37956.1\|2705106_2705295_-	hypothetical protein	NA	NA	NA	NA
QBJ37957.1\|2705429_2705618_+	hypothetical protein	NA	NA	NA	NA
QBJ37958.1\|2705537_2706095_-	hypothetical protein	A0A0N7C203	Escherichia_phage	9.5e-51	78.5
QBJ37959.1\|2706144_2706369_-	hypothetical protein	NA	NA	NA	NA
QBJ37960.1\|2706365_2706920_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	3.4e-64	65.3
QBJ37961.1\|2706916_2707213_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	3.9e-35	79.1
QBJ37962.1\|2707194_2707389_-	hypothetical protein	S4TNP0	Salmonella_phage	1.4e-12	61.5
QBJ37963.1\|2707385_2707985_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	3.3e-97	82.9
QBJ37964.1\|2708048_2708297_-	hypothetical protein	NA	NA	NA	NA
QBJ37965.1\|2708830_2709337_-	hypothetical protein	NA	NA	NA	NA
QBJ37966.1\|2709639_2710017_-	DUF977 domain-containing protein	A0A088CBK9	Shigella_phage	2.2e-14	36.1
QBJ37967.1\|2710034_2710787_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	8.5e-103	76.1
QBJ37968.1\|2710793_2711663_-	DNA-binding protein	A0A088CD36	Shigella_phage	6.9e-32	58.5
QBJ37969.1\|2711707_2712202_-	hypothetical protein	NA	NA	NA	NA
QBJ37970.1\|2712188_2712443_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
QBJ37971.1\|2712539_2712965_+	transcriptional regulator	K7PH71	Enterobacterial_phage	9.3e-14	56.3
QBJ37972.1\|2713275_2713431_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	4.7e-08	55.3
QBJ37973.1\|2713809_2714094_+	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
QBJ37974.1\|2714168_2714504_+	hypothetical protein	NA	NA	NA	NA
QBJ37975.1\|2714644_2717335_+	exonuclease VIII	Q9QF34	Lambdoid_phage	6.8e-118	83.5
QBJ37976.1\|2718192_2718513_+	hypothetical protein	A0A222YY67	Escherichia_phage	1.8e-33	59.2
QBJ37977.1\|2718505_2718838_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
QBJ37978.1\|2718834_2719386_+	Eaa protein	A0A192Y7X3	Salmonella_phage	2.8e-10	34.5
QBJ37979.1\|2719435_2719672_+	excisionase	NA	NA	NA	NA
QBJ37980.1\|2719661_2720804_+\|integrase	integrase	O21929	Phage_21	1.8e-173	80.0
QBJ37981.1\|2720917_2722168_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
2720865:2720880	attR	NA	NA	NA	NA
QBJ37982.1\|2722339_2723005_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
QBJ37983.1\|2723001_2723331_+	DUF1311 domain-containing protein	NA	NA	NA	NA
QBJ37984.1\|2723342_2723804_+	NUDIX hydrolase	NA	NA	NA	NA
QBJ37985.1\|2723857_2724964_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_9

4451947 : 4486673

Cronobacter_phage(63.33%)

capsid,terminase,integrase,holin,tail,head,portal

attL 4451239:4451283|attR 4482048:4482092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4451239:4451283	attL	NA	NA	NA	NA
QBJ39517.1\|4451947_4453672_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.3e-175	63.0
QBJ39518.1\|4453679_4454222_-	hypothetical protein	F1BUJ9	Cronobacter_phage	7.1e-43	56.0
QBJ39519.1\|4454193_4454916_-	hypothetical protein	F1BUK1	Cronobacter_phage	1.2e-40	40.3
QBJ39520.1\|4454905_4455493_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.0e-58	55.5
QBJ39521.1\|4455492_4457439_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.7e-123	68.1
QBJ39522.1\|4457450_4458044_-	hypothetical protein	F1BUK5	Cronobacter_phage	4.7e-72	63.8
QBJ39523.1\|4458036_4459221_-	hypothetical protein	F1BUK6	Cronobacter_phage	1.2e-154	69.2
QBJ39524.1\|4459213_4459549_-	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	1.2e-29	58.7
QBJ39525.1\|4459545_4461660_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.6e-141	41.3
QBJ39526.1\|4461661_4461841_-	hypothetical protein	A5X9I8	Aeromonas_virus	6.4e-09	63.0
QBJ39527.1\|4461849_4462119_-	hypothetical protein	NA	NA	NA	NA
QBJ39528.1\|4462115_4462313_-	hypothetical protein	NA	NA	NA	NA
QBJ39529.1\|4462221_4462605_-	hypothetical protein	F1BUL2	Cronobacter_phage	1.2e-12	38.5
QBJ39530.1\|4462604_4462943_-	hypothetical protein	F1BUL3	Cronobacter_phage	8.9e-44	84.2
QBJ39531.1\|4462929_4463241_-\|holin	holin	NA	NA	NA	NA
QBJ39532.1\|4463245_4463701_-	DUF2597 domain-containing protein	A5X9I1	Aeromonas_virus	1.5e-38	52.3
QBJ39533.1\|4463704_4464847_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.1e-130	61.6
QBJ39534.1\|4464849_4465545_-	hypothetical protein	F1BUL6	Cronobacter_phage	6.7e-70	58.4
QBJ39535.1\|4465541_4466018_-\|tail	phage tail protein	NA	NA	NA	NA
QBJ39536.1\|4466014_4466488_-\|head	head completion protein	F1BUL8	Cronobacter_phage	1.2e-30	54.3
QBJ39537.1\|4466590_4467292_-\|terminase	terminase	F1BUM0	Cronobacter_phage	2.0e-69	57.1
QBJ39538.1\|4467294_4468317_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	6.6e-98	55.7
QBJ39539.1\|4468345_4469407_-\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	2.2e-32	44.3
QBJ39540.1\|4469583_4471395_+	hypothetical protein	F1BUM5	Cronobacter_phage	7.4e-185	54.4
QBJ39541.1\|4471391_4472453_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	5.2e-122	60.5
QBJ39542.1\|4472500_4472776_+	transcriptional regulator	F1BUM8	Cronobacter_phage	3.1e-26	60.7
QBJ39543.1\|4472828_4474664_+	hypothetical protein	NA	NA	NA	NA
QBJ39544.1\|4474755_4477392_-	replication endonuclease	E5G6L9	Salmonella_phage	3.5e-127	37.9
QBJ39545.1\|4478481_4478871_-	hypothetical protein	NA	NA	NA	NA
QBJ39546.1\|4478886_4479108_-	hypothetical protein	A0A0M4S6M9	Salmonella_phage	2.2e-11	50.0
QBJ39547.1\|4479245_4479521_+	hypothetical protein	NA	NA	NA	NA
QBJ39548.1\|4479495_4480116_-	hypothetical protein	NA	NA	NA	NA
QBJ39549.1\|4480116_4480389_-	hypothetical protein	Q1JS20	Enterobacteria_phage	1.3e-40	85.6
QBJ39550.1\|4480583_4480877_+	XRE family transcriptional regulator	Q1JS21	Enterobacteria_phage	2.0e-36	77.3
QBJ39551.1\|4480946_4481927_+\|integrase	integrase	Q7Y4C5	Escherichia_virus	1.2e-160	85.0
QBJ39552.1\|4482116_4482617_-	stress adaptor protein CpxP	NA	NA	NA	NA
4482048:4482092	attR	NA	NA	NA	NA
QBJ39553.1\|4482767_4483466_+	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
QBJ39554.1\|4483462_4484836_+	two-component system sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
QBJ39555.1\|4484886_4485282_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
QBJ39556.1\|4485293_4486046_-	MOSC domain-containing protein	NA	NA	NA	NA
QBJ39557.1\|4486052_4486673_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr_ID: CP025280.1|QBJ37968.1|2710793_2711663_-|DNA-binding-protein

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Acr_ID: CP025280.1|QBJ37969.1|2711707_2712202_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP025280.1|QBJ37968.1|2710793_2711663_-|DNA-binding-protein

2710793_2711663_-

289 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.44642857142857145	0.9655172413793104

2677146-2724964

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP025280_2	Unclear	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	2680491-2680460	0

1. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to CP025280 position: 2680491-2680460, mismatch: 0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

CP025280.1|QBJ37969.1|2711707_2712202_-|hypothetical-protein

2711707_2712202_-

164 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.44642857142857145	0.9655172413793104

2677146-2724964

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP025280_2	Unclear	2.1\|986459\|32\|CP025280\|PILER-CR,CRISPRCasFinder	986459-986490	32	2680491-2680460	0

1. spacer 2.1|986459|32|CP025280|PILER-CR,CRISPRCasFinder matches to CP025280 position: 2680491-2680460, mismatch: 0

acgacgtccgcccggaggcgctgcgacgtttt	CRISPR spacer
acgacgtccgcccggaggcgctgcgacgtttt	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025280

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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