CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027286	Clostridium chauvoei strain SBP 07/09 chromosome, complete genome	3 crisprs	cas3,csa3,DEDDh,WYL,cas6,cas8b1,cas7b,cas5,cas4,cas1,cas2,cas3HD,DinG	0	6	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027286_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027286_1

391813-391888

Orphan

Consensus_repeat	Method
CGTGATTTAATTGCACGTCGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027286_1

>merge|CP027286|1|391813-391888|CRISPRCasFinder
CGTGATTTAATTGCACGTCGTTGGTAGGCAACAGAAAAACCTAAAAGATTTGCGTGATTTAATTGCACGCCGTTGG

>CP027286|1|1|391813-391888|CRISPRCasFinder
CGTGATTTAATTGCACGTCGTTGG	TAGGCAACAGAAAAACCTAAAAGATTTG
CGTGATTTAATTGCACGCCGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027286.1\|QBJ74477.1\|391961_392243_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376232
CP027286.1\|QBJ74469.1\|383213_384278_-\|ABC-transporter-permease	unknown	unknown	unknown
CP027286.1\|QBJ74473.1\|388263_389028_+\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ74475.1\|390652_390958_-\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ74481.1\|398410_399856_+\|DUF3502-domain-containing-protein	unknown	unknown	gnl\|CDD\|378792
CP027286.1\|QBJ74483.1\|402466_402943_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	unknown
CP027286.1\|QBJ74476.1\|391172_391559_-\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ74470.1\|384332_384620_-\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ74485.1\|404951_406400_+\|DUF3502-domain-containing-protein	unknown	unknown	gnl\|CDD\|378792
CP027286.1\|QBJ76581.1\|393515_394472_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP027286.1\|QBJ74482.1\|399941_402332_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379104
CP027286.1\|QBJ74474.1\|389429_389933_+\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ74472.1\|386650_387865_+\|DDE-domain-containing-protein	unknown	unknown	gnl\|CDD\|372646
CP027286.1\|QBJ74467.1\|381328_382021_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
CP027286.1\|QBJ74468.1\|382017_383214_-\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ74478.1\|392527_393487_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
CP027286.1\|QBJ74471.1\|384887_386327_+\|DDE-domain-containing-protein	unknown	unknown	gnl\|CDD\|372646
CP027286.1\|QBJ74480.1\|397760_398144_-\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ74484.1\|402949_404800_+\|glycosyl-hydrolase-family-20	unknown	unknown	gnl\|CDD\|119335
CP027286.1\|QBJ74479.1\|394598_397730_+\|alpha-mannosidase	unknown	unknown	gnl\|CDD\|223460

Protein	Function_ID	Function_description	E-value
CP027286.1\|QBJ74484.1\|402949_404800_+\|glycosyl-hydrolase-family-20	gnl\|CDD\|119335	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	9.82161e-100
CP027286.1\|QBJ74477.1\|391961_392243_+\|hypothetical-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	9.90129e-09
CP027286.1\|QBJ74472.1\|386650_387865_+\|DDE-domain-containing-protein	gnl\|CDD\|372646	pfam13610, DDE_Tnp_IS240, DDE domain. This DDE domain is found in a wide variety of transposases including those found in IS240, IS26, IS6100 and IS26.	5.27306e-17
CP027286.1\|QBJ74467.1\|381328_382021_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	6.01867e-95
CP027286.1\|QBJ74481.1\|398410_399856_+\|DUF3502-domain-containing-protein	gnl\|CDD\|378792	pfam12010, DUF3502, Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.	7.36459e-51
CP027286.1\|QBJ74478.1\|392527_393487_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	4.90514e-139
CP027286.1\|QBJ74471.1\|384887_386327_+\|DDE-domain-containing-protein	gnl\|CDD\|372646	pfam13610, DDE_Tnp_IS240, DDE domain. This DDE domain is found in a wide variety of transposases including those found in IS240, IS26, IS6100 and IS26.	9.70856e-30
CP027286.1\|QBJ74479.1\|394598_397730_+\|alpha-mannosidase	gnl\|CDD\|223460	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism].	2.97181e-177
CP027286.1\|QBJ74485.1\|404951_406400_+\|DUF3502-domain-containing-protein	gnl\|CDD\|378792	pfam12010, DUF3502, Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.	1.34979e-52
CP027286.1\|QBJ76581.1\|393515_394472_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.47791e-66
CP027286.1\|QBJ74482.1\|399941_402332_+\|hypothetical-protein	gnl\|CDD\|379104	pfam13287, Fn3_assoc, Fn3 associated.	2.88047e-14

>CP027286.1|QBJ74476.1|391172_391559_-|hypothetical-protein
MLIVASVLKIKETITASKIVAALSKPKWLGEECNRKAFKGAYEQDKYKTLTEFPVYTGTTSKSRRIDVLVAENLRVKEHFNLNLHGIEIKVSKSDLVNDMKYSEYAEFINYLWLELLSICLFLILIRL
>CP027286.1|QBJ74475.1|390652_390958_-|hypothetical-protein
MDIQGLLAYLDGIYPSLKLIVNNSTKRQKTTIYVERKLILKLLYQPLSTVKGLDTKLFELLCSQYTNVSKILELVNRFRSILKAKDITKLDLWNILSILDI
>CP027286.1|QBJ74474.1|389429_389933_+|hypothetical-protein
MLKVFKNEGTKKENIEFDIYTPINIEFGVWNISKEPTIYWRTGDFSSSLIEIGIGQYKKDIRSITLTICKNVYELDNYSENNFNIFKGSPILELENINDEIYTDEKGTLKVYIESKNVSIIFSENEISDCLQNDNVDFYLDANKSLVGLSVNNISEENKAILKEALV
>CP027286.1|QBJ74473.1|388263_389028_+|hypothetical-protein
MDSVKASANIFTRECQEYWVFSLDGAATHNNSITDEQDQLIENKLNLEKLGYGNLRNYNGQITAEWNEQFNKVVNQFISDFGLKDKYDKLGGNKKTQLYVWISQAVNGQIIKVQRDTGSQGTNNKTHKEVITLESIRENFYLGIGDALIGAVKGVFEFVSHPIDGVIGVANGIQFLNKVISNPNCEEAIILDKIIVEAVNNFIDSNLNEKSRVLGRIVGEILIIVATDGIAESIMEHLPQIANQVKNGGKVEKY
>CP027286.1|QBJ74472.1|386650_387865_+|DDE-domain-containing-protein
MDSIITYLITYNQYLIAIIGQLLLFISQHIPLNQMIFDDSNSPEYQKFKVDKLPTIIRFEKVDYILLLAYYKHKYNKTVKPAQRRNGKSIPKKTKCPKCGAPHEYIYDNNGSKGQFQCKVCGLTFKETNYTTKPIVFICPYCGATLTEQKQRKHFKIHKCNNSKCLYYQRNLKNLPKNIDPCDKYKYKLHYIYREFNINFLKLNPISKHATGFSFKKFSPHIMGLCLTYHVNCKMSILGYQVSDTRATDPCILTMRMAFDKFKDFSGKALNFVADGYSSYPLAKQQFELEKNKEFNLTQVIGLTNDDPVSEEFRWVEQVVERLNRTFKSSYRGTCGYGSDEGALYGFSLWVAYYNFLRPHPYNYWRPLNELKQLDGIDNMPAKWQILISLGQQTILHMQESQTS
>CP027286.1|QBJ74471.1|384887_386327_+|DDE-domain-containing-protein
MDSIITYLITYNQYLIAIIGQLLLFISKHIPLNQMIFDDSNSPEYQKFKVDKLPTIIRFEKVDYILLLAYYKHKYNKTVKPVQRRNGKSIPKKTKCPKCGAPHEYIYDNNGSKGQFQCKVCGLTFKETNHTTKPIVFICPYCGATLTEQKQRKHFKIHKCNNSKCLYYQRNLKNLPKNIDPCDKYKYKLHYIYREFNINFFKMDLYPISKHATGFSFKKFSPHIMGLCLTYHVNCKMSTRQTAHVLKEVHGIKISHRTVANYALTAAAVIKPFVDTFDYKPSKILSADETYIKVKGIKHYVWIVMDACKRSILGYQVSDTRDTGPCILAMRMAFDKFKDFPGKALNFVADGYSSYPLAKQQFELEKNKEFNLTQVIGLTNDDPVSEEFRWVKQVVERLNRTFKSSYRGTCGYGSDEGALYGFSLWVAYYNFLRPHPYNYWRPLNELKQLDGIDNMSAKWQILISLGQQTILHMQESQTS
>CP027286.1|QBJ74470.1|384332_384620_-|hypothetical-protein
MDGTGTVIGGSLYNTNGAKNSANASTANKSNNKYRAYVQLYAYKTNGVIDRNSTRTGAESGDVGVSSYAANVGIWESLHSTDQSIDQNCGLRLYM
>CP027286.1|QBJ74469.1|383213_384278_-|ABC-transporter-permease
MNISLYFMIGGTMKKNINTLLTLGFSIALFTISFIISSNYINIKYVIDENKFNDTFSYLDIHLQTPLSLLESNKLLKSIGINKYATQPSLVVNRIGETDYANKLIGVSENFNIEDYFNIEWLSNGKNDFYNRTDVVIIGNSLMQALNKLNSSTEYIEIQGENRKIAGVLKDSQYASFMTFMPIEYLRKENELSNIIQCFVDKNTNIAFGNLKGAIHNSPAKNVLKFAIDKSMTIEGEIVDIILGILTIVIFSICYVQINKRKFSIMRLVGAKQKHILYEYIRCLLPMFSIAFFIAIYFSSITINYISNNIDDIFFKVDLINICMTGIIGFILILLTSLLCMINTLRFRILEDIR
>CP027286.1|QBJ74468.1|382017_383214_-|hypothetical-protein
MMKDKLFFTFRKDKVINIILIIQLTLSIFCIYNFLTTFFFKTEYTKLYNSSYDIENGIIIKFTPANISGQNVNPLPILKSLEKNNIKGGIMLEMPDEKYSIPLKTLNISPKLLMNREEYIFGDNTAILPIKMNYTSLNRHSDKINGQIEENMWKIEGNTIPVVVGVNFSNKFKIGDIIKFNGNDFHIIGVMSESILYQTHYDSILTAKDTSGKFIIPIEDKDYTSSYNNDPIIISNSDITSVETALKDFSNLFEIRNYGEDYEWFSKEIKYDLFKKNIRTLILMLATIGSLFITLLIKILSSKDRFGILYSLGFKQKEINNIFILEFSPILYIIIITSFILTNTVGKFSFRRFLVQNKVCYWGVSISIVILLIIICFKFIFNKINKLSPKEMMEDFNK
>CP027286.1|QBJ74467.1|381328_382021_-|ABC-transporter-ATP-binding-protein
MITLLNIEKIYGKNENQTIALKNINLQINEGDFISIMGSSGCGKSTLLNILGMIDKPTKGDYIFENQKINFNNINSLSEIRNTKISFIFQNFALINDMTVLNNCLLPLKFRKGKKSDKHNLIDKYLSELGILNIKNKLIKELSGGQQQRVAIARALVQDTKIILADEPTGALDEENSIKILEIFKLLNEKYKKTIILVTHDLDVSKYAHTTYIIKDGKFISNSKDFILNE
>CP027286.1|QBJ74477.1|391961_392243_+|hypothetical-protein
MAKLNKKDVLKTIISSAKLYKKALSGKLSVNDFELRTDGTTELKLLVLPSLMDFKDHVRMIGEFEDCSPKLFTEVLAGNIQGALGFVHDNKGE
>CP027286.1|QBJ74478.1|392527_393487_+|sugar-ABC-transporter-permease
MLKKSKKEESTKKNRFKTFKSNKELLLLTIPGAIWFLIFAYLPMFGVVVAFKDWRIHGGFLESLVKSEWVGFDNFKFLFQSSDAWLITKNTIAYNVVFIVLGIVIPVTLAILLKELLNKRGSKFYQSSMFLPYFLSWVVVSYCLYAFLSPEKGYINGLLTSFGMDKISWYTEPKFWPFIIIFMSQWKGIGYGTVVYLAAICGIDKTYYEAAIIDGASKWQQIKHITIPLLKPVLIIMFITAVGGMFKSDFGLFYQLPKNSGALYPVTNVIDTYVYRGLMNLGNIGMSSAASLYQSIVGLVLILVTNGIVRKVDNENAFF
>CP027286.1|QBJ76581.1|393515_394472_+|carbohydrate-ABC-transporter-permease
MNRKTARFRGKKSKEPAEEISKFNSISKGTNVGFNILFMILAALCIIPFIFVVIISLTSEQALQANGYRFWPQEWSFAAYKYIFSSGSQIMRAYGVTIIVTVSGTLLGLAIMSMYGYALSRKSFAYRKFFTKLIFIPMLFSGGMVSSYLVVTKFLGLKNSILALILPMCVSSFNIIILRTFFKTTVPDAIVESAKIDGASEWKLFLKIVLPISLPGIATIALFLTLGYWNDWFNAMLYIDDNSLMPLQYLLIRIESSMEFLSNNAALMGANAIEASANMPKDTAKMAIVVITTLPIIFAYPFFQRYFVNGLTIGAVKE
>CP027286.1|QBJ74479.1|394598_397730_+|alpha-mannosidase
MHYLLERIEKTCGEIAKYVYRDQINLEDYKYIDGNYHNIDLIKEAPEEGWREFKTGDLWGGKDCHGWFKCSVEVPEHFKGQTIALNFHTFEEGWDATNPQFILYVNGEQIQGVDINHREIILTHDAVPGTRYDIDLHAYAGMLADKLATLHGKLVVIDMVARDLYFNLKVPVDVCKELDKEDKNRIDMITVLNDAINLIDLRRPKSKEYNESVIKANEFLNEKFYGELCGHEYVTATCVGHTHIDVAWLWTVAQTREKVARSFSTVLKLMEEYPEYIFMSSQPQLYKFLKEDHPKIYKKVKEKVKEGVWEAEGAMWLEADCNVTSGESLVRQILHGKRFFKEEFNVDNKVLWLPDVFGYSAALPQILKKSDVDYFMTTKIAWNQFNKIPNDTFMWRGIDGTEVLTHFITTTCPGQDRASHFTTYNGHIQPDAIMGAWRRYQNKNINDDVLISFGWGDGGGGATLEMLENGRRLAKGIPGAPRVKMGTALDYFKRLDEKTKNNSKLPKWVGELYLEYHRGTYTSMARNKRDNRACENLYTSAEKINSLSMLYGKNYQYRSITDSWETVLLNQFHDIIPGSSIKEVYDVTEVEYKELLENGSKLVNEGVDYIASKINLKDRSVVVSNTLGFERSDIATFEVPEDIKNPAVIDNNGEELVCQRIEENKAIFFAKNVPANGHKSFKIVESTKEVTLDTVLTDKEAENKFVKIKFDDKGQIVSFIDKASGREILKDGAIGNELQAFEDKPMCFDNWDIDIYYKEKMWKVDDVRSIEVVEKGPVRSTLRIERKFLESTIVQKIYIYNDLQRVDFDSYADWKEFDVLLKTAFPIEVNANEATYEIQYGNVTRSTHNNTSWDVAKFEVCGHKWADLSEGEFGVSMLNNSKYGHDIKDGNMRLTLIKSSTDPNPDADKEEHYFTYSIYPHLGTWKDAETTQKAYELNVPLYTKVEEAHEGELSDELSLVKVNKNNVMIEVIKKAEDTDHLVVRMYEFHNKRTTATLEFLSDIEEIFECNLMERNLEAIEAHGNKIEFTIKPYEIKTFKFKLK
>CP027286.1|QBJ74480.1|397760_398144_-|hypothetical-protein
MKISKGNKYLLTITILFCSFYTLMISPVKEDRLSMGFIVLFIPALTIFILLMENSKLKKVLLSILLVLTALFIIVVVYLIAISGNFYPINGDRFNFSMFLQVCLFTSPILICYILLLRSIFKEIVSI
>CP027286.1|QBJ74481.1|398410_399856_+|DUF3502-domain-containing-protein
MRKVKKLLALATCAVLTTSLALTGCGNSSSSGSKGDETVNLTWYTIGQEPKDLQLVEDEINKYLKDKINATIDMKFADFGDYDQKLSVVINSGEAYDLAFTCSWAGNYVGNARKGAFLELDDYLETTGKDMKKEIDQRFWDGAKVEGKTYAVPNQKELGVQPMWVFTKELVDKYNIPYQDIHELEDLEPWLKVIKEKEPEVVPLYIDKNLSPPQYFDFFSEPFGVEYEDEGLTVKNIFDTDKFKSTLKTLRKYYEAGYINTDSSIAQYDKSIKRFVTKADGQPYAEGIWAKDVGYELVASPIMDTHITSASTTGSMIAVSKNSKNPEKAVEFLNLLNTDEHLRNLVNYGIEGTHYDKVADKQIKLLPRSVDYGVAYFSTGNLFKTYVLDTEPTTKWDEFEEFNKNSKVSPALGFKFNPEPVSTQIAGISNAYQEFRALIFSGSVDIDEYIEKLNTKLKEQGMDEVMKEMQKQLDEWKKENK
>CP027286.1|QBJ74482.1|399941_402332_+|hypothetical-protein
MISIVNIYNFIRKTVYPSGEFVLDDYETVVRQIEILKQYGLPSTYALKYDALMDERYSNLIKSSVDEYDEVGVWWEFDKQLAEKAGVKWKGETPVDDHVDMGYSLGYLPEDRIKMVDVYMEDFKSIFGYYPKSVGSWVIDIVTLNYFKEKYGVVAAAICRDQIGTDGFTLWGGYFNQGYYPSKLNEYMPAQNKENQVDLPIFRLLGPDPIYCFEDGLRKGISDVYTLEPAGRMGGTKEWIEWIFDRLTKEKTLGFSYAQVGQENTFLWNTMMKGYEIQIPYVAKLAKEGKVRVETLEESGKWFKKKYKLTPPTTFVASEDWNKEEDLRTLWYNSRFYRVSLLWDDNELSIRDLHLFNEDYKSRYYNDVLNGNESVFDTLPILDAHRWSDGDFRASIDVVLVDEDGNIEKLKGEEPEFYIEDDSTYKIVWKCSQGKIKIICDEAKITFEAIESFKNNEKLALYINTLPVLKNSDTKVLKCSHNGFNYSLIAENGEFKLKENKVIVLSENNKITFTFSKGEGNKKYDFFNKEYVENKETIDNYIPKYKRIKSTSKVMPRAFAPIITPKVILKEAPYEGEFRIENINKGGEVYYTLDGSEPNKNSSLYKTPIKVKGETIIKAIAYNEGFKESSIIEGRLYTTLPIKDIKGLTKATENKKYNNNGVYDLIDGQKGTTSYREGGWLGYTDDMDVIVDLGEVLDINKITVGFLQDTRAWIYYPRYVDFSVSIDGENFEKLDRVNYKNRVPRQEVGVENISIQNKIKARYIRVFAKNEGVCPPWSIMKGEGPAFMFVDQITCM
>CP027286.1|QBJ74483.1|402466_402943_+|ABC-transporter-ATP-binding-protein
MHQEQFIENNNDKILKVITAVKTLILVFAALTYIFESLTLAVLILLVYVIVHFLTLSFFVEYEYELTEDELDLSKIMSKKKRKLIKTINLRNAEFFKDASEFSPQRYSNVKVVKLYTKEYVNKEKQVILINESGDMRAYELSLKDDLKKAIERIKRRG
>CP027286.1|QBJ74484.1|402949_404800_+|glycosyl-hydrolase-family-20
MYLIPSPKKLVNSSGSFNIRRDTEIILNYNCNFNDFEGALILKKEIEDNLGFDIKINKAYIDEKSKNAIKLIKSEVVGNEECYELEINKDSITIIGYGDSGLFYGIQTLRQILRQEGAILSNVKINDEPYFKNRGFYHDVTRGRVPKLETLKKLVDKAALYKINQIQLYIEHTFAFKGMSEVWIDKDPLTAEEILILDKYCKSRHIELIPSLATFGHLYEVLRTKSYSNLCELENMEDDEYSFVDRMAHHTLDVSNAESLKLVENMLKQFIPLFTSDKFNICGDETFDLGKGKSKELGEKLGQGKLYTGFLNKIIDIVKGYNKEVMFWGDVILNHTEVIKDIPQDVICLNWNYGAEATEEGTRKIHEAGREQYVCPGVAGWSHLMNLMDNGFENITRMISYGVKHEAKGVLNTNWGDYGHINILEASIPGMAYGGALSWNPKGEKEFETIYKGLSLLEYGDTSLTVVSILRDLSKTQVVTWSDLVRWKELFDKNSEVREGIKNLNIEDIIEGYNNATEIEIKLTALLNKVKNKEALQEFIVCTRGIILINKFFISLLKAKFKQECIGFDFDNNTLAKELEEWFYDYSYIWKKDSKESELNRIREVIKYTSKELRTF
>CP027286.1|QBJ74485.1|404951_406400_+|DUF3502-domain-containing-protein
MKFKKLLALAACATLTTTTLLTGCGNSGAKAGNKGDEPVTLTWYTIGQEPKDLQMVEDEANKYLEEKINAKIDMKFIDYGDYNQKLSVIINSGESFDLAFTCSWAGDYLGNSRKGAFLELNDYLDTTGKDMKEAIDQRFWDGATIDGKIYAVPNQKEISTAPMWVFTKEYVDKYNIPYQDIHTIQDLEPWLKVIKENEPGVTPLYITKGFSAPQYFDQLVDPVGVEHNDDSLKIKNMFETDKMKEQLEVLRKYYQAGYINADAATAQDDKSVKRFVTKADGQPYAENLWSKDLKYDVVASTIMDTYITNASTTGSMIGISKNSKNPEKAVEFLNLLNTDEYLRNLINYGVEGTHYEKVGDKQIKLLPKEEDYRVGYYTVGNLFLTYVLDKEPLTKWDEFEDFNNKAKNSPALGFKFDPAAVSTEIAAVNNVLEEFKSTIYSGSMDIDEYLPKLNAKLKEQGVDKIIAEMQKQIDEWAKTNKQ

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Crispr_ID: CP027286_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027286_2

1113597-1115204

TypeI-B

II-B

Consensus_repeat	Method
GATTAACATTAACATGAGATGTATTTAAAT	CRISPRCasFinder
GATTAACATTAACATGAGATGTATTTAAAT	CRT
AATAGATTAACATTAACATGAGATGTATTTAAAT	PILER-CR
GATTAACATTAACATGAGATGTATTTAAATT	PILER-CR

24 spacers

cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,WYL

The CRISPR arrays of CP027286_2

>merge|CP027286|2|1113597-1115204|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GATTAACATTAACATGAGATGTATTTAAATAGATAACAACTGGAGAATAAAACCTATAGAAGAAGGATTAACATTAACATGAGATGTATTTAAATAAATTGTGTTCCGCCGGGTGCAAAATTCCCTTATATAGATTAACATTAACATGAGATGTATTTAAATCAGGAGTCGTTGTATTTGATGAAATACATGAATATGAGATTAACATTAACATGAGATGTATTTAAATAAAGGAGAAATATATAGAGTTGATAAAAAAATATTTGATTAACATTAACATGAGATGTATTTAAATATTCTCCTAAAGATGATAAGAATGAATCTTTTAATGGATTAACATTAACATGAGATGTATTTAAATAGATAAGCTAGGTAGTGACCCTGCTGGAAAATTACAGATTAACATTAACATGAGATGTATTTAAATGCTGAATCTGGTGAGGACAATGTTGATATAACAATTGATTAACATTAACATGAGATGTATTTAAATTTTGTGCAATACTATAGATATAGCAAGTGCAAGTTCGATTAACATTAACATGAGATGTATTTAAATCATCTGACACTAATAAAATAGAACTAGAGATTTACAGATTAACATTAACATGAGATGTATTTAAATCCTTCTGATGATATAACATTTGCTATAAGTTGTGGATTAACATTAACATGAGATGTATTTAAATGTTAAAAATTTTCACCCACAAGGAACTTTTATACAAGATTAACATTAACATGAGATGTATTTAAATAGTGAAAAAGAAAAGGAAATTAGAAAGAAAATAAGGATTAACATTAACATGAGATGTATTTAAATAAGTCAGTTTATGTGTGGATTAATCCAAAAGCATTGATTAACATTAACATGAGATGTATTTAAATTGGACTTTCCTCCCAAGCTTATTATTTTTTAAAACAGATTAACATTAACATGAGATGTATTTAAATTTGTTAGCTTTCTGTATTTGCAAATCGCATATAATTGATTAACATTAACATGAGATGTATTTAAATAAATTTGGAGGGATAATTTAAATGGGTATATTAAAGATTAACATTAACATGAGATGTATTTAAATCTTTTAACATATCCCAATCCTTGATAACGAGAATACGATTAACATTAACATGAGATGTATTTAAATGATGCTTTGAAGAAGTTAAATGATGAAGAGAAGTTGATTAACATTAACATGAGATGTATTTAAATTAAGGAAATGTACAACAGTATAATTGATARAAAGAAGATTAACATTAACATGAGATGTATTTAAATAATTAAAGATACTAAAAAAGGTTTTATAGACTTCACGATTAACATTAACATGAGATGTATTTAAATAAAATAAAAAATCCAAAACATTGATAACGAGAATACGATTAACATTAACATGAGATGTATTTAAATGATGCTTTGAAGAAGTTAAATGATGAAGAGAAGTTGATTAACATTAACATGAGATGTATTTAAATTAAGGAAATGTACAACAGTATAATTGGTAAAATGAAGATTAACATTAACATGAGATGTATTTAAATGGTAGAAAATAATGATGAAATAAAATATTGTTTTTAGATTAACATTAACATGAGATGTATTTAAAT

>CP027286|2|2|1113597-1115204|CRISPRCasFinder
GATTAACATTAACATGAGATGTATTTAAAT	AGATAACAACTGGAGAATAAAACCTATAGAAGAAG
GATTAACATTAACATGAGATGTATTTAAAT	AAATTGTGTTCCGCCGGGTGCAAAATTCCCTTATATA
GATTAACATTAACATGAGATGTATTTAAAT	CAGGAGTCGTTGTATTTGATGAAATACATGAATATGA
GATTAACATTAACATGAGATGTATTTAAAT	AAAGGAGAAATATATAGAGTTGATAAAAAAATATTT
GATTAACATTAACATGAGATGTATTTAAAT	ATTCTCCTAAAGATGATAAGAATGAATCTTTTAATG
GATTAACATTAACATGAGATGTATTTAAAT	AGATAAGCTAGGTAGTGACCCTGCTGGAAAATTACA
GATTAACATTAACATGAGATGTATTTAAAT	GCTGAATCTGGTGAGGACAATGTTGATATAACAATT
GATTAACATTAACATGAGATGTATTTAAAT	TTTGTGCAATACTATAGATATAGCAAGTGCAAGTTC
GATTAACATTAACATGAGATGTATTTAAAT	CATCTGACACTAATAAAATAGAACTAGAGATTTACA
GATTAACATTAACATGAGATGTATTTAAAT	CCTTCTGATGATATAACATTTGCTATAAGTTGTG
GATTAACATTAACATGAGATGTATTTAAAT	GTTAAAAATTTTCACCCACAAGGAACTTTTATACAA
GATTAACATTAACATGAGATGTATTTAAAT	AGTGAAAAAGAAAAGGAAATTAGAAAGAAAATAAG
GATTAACATTAACATGAGATGTATTTAAAT	AAGTCAGTTTATGTGTGGATTAATCCAAAAGCATT
GATTAACATTAACATGAGATGTATTTAAAT	TGGACTTTCCTCCCAAGCTTATTATTTTTTAAAACA
GATTAACATTAACATGAGATGTATTTAAAT	TTGTTAGCTTTCTGTATTTGCAAATCGCATATAATT
GATTAACATTAACATGAGATGTATTTAAAT	AAATTTGGAGGGATAATTTAAATGGGTATATTAAA
GATTAACATTAACATGAGATGTATTTAAAT	CTTTTAACATATCCCAATCCTTGATAACGAGAATAC
GATTAACATTAACATGAGATGTATTTAAAT	GATGCTTTGAAGAAGTTAAATGATGAAGAGAAGTT
GATTAACATTAACATGAGATGTATTTAAAT	TAAGGAAATGTACAACAGTATAATTGATARAAAGAA
GATTAACATTAACATGAGATGTATTTAAAT	AATTAAAGATACTAAAAAAGGTTTTATAGACTTCAC
GATTAACATTAACATGAGATGTATTTAAAT	AAAATAAAAAATCCAAAACATTGATAACGAGAATAC
GATTAACATTAACATGAGATGTATTTAAAT	GATGCTTTGAAGAAGTTAAATGATGAAGAGAAGTT
GATTAACATTAACATGAGATGTATTTAAAT	TAAGGAAATGTACAACAGTATAATTGGTAAAATGAA
GATTAACATTAACATGAGATGTATTTAAAT	GGTAGAAAATAATGATGAAATAAAATATTGTTTTTA
GATTAACATTAACATGAGATGTATTTAAAT

>CP027286|2|1|1113597-1115204|CRT
GATTAACATTAACATGAGATGTATTTAAAT	AGATAACAACTGGAGAATAAAACCTATAGAAGAAG
GATTAACATTAACATGAGATGTATTTAAAT	AAATTGTGTTCCGCCGGGTGCAAAATTCCCTTATATA
GATTAACATTAACATGAGATGTATTTAAAT	CAGGAGTCGTTGTATTTGATGAAATACATGAATATGA
GATTAACATTAACATGAGATGTATTTAAAT	AAAGGAGAAATATATAGAGTTGATAAAAAAATATTT
GATTAACATTAACATGAGATGTATTTAAAT	ATTCTCCTAAAGATGATAAGAATGAATCTTTTAATG
GATTAACATTAACATGAGATGTATTTAAAT	AGATAAGCTAGGTAGTGACCCTGCTGGAAAATTACA
GATTAACATTAACATGAGATGTATTTAAAT	GCTGAATCTGGTGAGGACAATGTTGATATAACAATT
GATTAACATTAACATGAGATGTATTTAAAT	TTTGTGCAATACTATAGATATAGCAAGTGCAAGTTC
GATTAACATTAACATGAGATGTATTTAAAT	CATCTGACACTAATAAAATAGAACTAGAGATTTACA
GATTAACATTAACATGAGATGTATTTAAAT	CCTTCTGATGATATAACATTTGCTATAAGTTGTG
GATTAACATTAACATGAGATGTATTTAAAT	GTTAAAAATTTTCACCCACAAGGAACTTTTATACAA
GATTAACATTAACATGAGATGTATTTAAAT	AGTGAAAAAGAAAAGGAAATTAGAAAGAAAATAAG
GATTAACATTAACATGAGATGTATTTAAAT	AAGTCAGTTTATGTGTGGATTAATCCAAAAGCATT
GATTAACATTAACATGAGATGTATTTAAAT	TGGACTTTCCTCCCAAGCTTATTATTTTTTAAAACA
GATTAACATTAACATGAGATGTATTTAAAT	TTGTTAGCTTTCTGTATTTGCAAATCGCATATAATT
GATTAACATTAACATGAGATGTATTTAAAT	AAATTTGGAGGGATAATTTAAATGGGTATATTAAA
GATTAACATTAACATGAGATGTATTTAAAT	CTTTTAACATATCCCAATCCTTGATAACGAGAATAC
GATTAACATTAACATGAGATGTATTTAAAT	GATGCTTTGAAGAAGTTAAATGATGAAGAGAAGTT
GATTAACATTAACATGAGATGTATTTAAAT	TAAGGAAATGTACAACAGTATAATTGATARAAAGAA
GATTAACATTAACATGAGATGTATTTAAAT	AATTAAAGATACTAAAAAAGGTTTTATAGACTTCAC
GATTAACATTAACATGAGATGTATTTAAAT	AAAATAAAAAATCCAAAACATTGATAACGAGAATAC
GATTAACATTAACATGAGATGTATTTAAAT	GATGCTTTGAAGAAGTTAAATGATGAAGAGAAGTT
GATTAACATTAACATGAGATGTATTTAAAT	TAAGGAAATGTACAACAGTATAATTGGTAAAATGAA
GATTAACATTAACATGAGATGTATTTAAAT	GGTAGAAAATAATGATGAAATAAAATATTGTTTTTA
GATTAACATTAACATGAGATGTATTTAAAT

>CP027286|2|1|1113924-1114089|PILER-CR
AATGGATTAACATTAACATGAGATGTATTTAAAT	AGATAAGCTAGGTAGTGACCCTGCTGGAAAAT
TACAGATTAACATTAACATGAGATGTATTTAAAT	GCTGAATCTGGTGAGGACAATGTTGATATAAC
AATTGATTAACATTAACATGAGATGTATTTAAATTTTGTGCAATACTATAGATATAGCAAGTGCAAGTTCGATTAACATTAACATGAGATGTATTTAAATCATCTGACACTAATAAAATAGAACTAGAGATTTACAGATTAACATTAACATGAGATGTATTTAAATCCTTCTGATGATATAACATTTGCTATAAGTTGTGGATTAACATTAACATGAGATGTATTTAAATGTTAAAAATTTTCACCCACAAGGAACTTTTATACAAGATTAACATTAACATGAGATGTATTTAAATAGTGAAAAAGAAAAGGAAATTAGAAAGAAAATAAGGATTAACATTAACATGAGATGTATTTAAATA	AGTCAGTTTATGTGTGGATTAATCCAAAAGCATT
GATTAACATTAACATGAGATGTATTTAAATT	GGACTTTCCTCCCAAGCTTATTATTTTTTAAAACA


>CP027286|2|2|1114387-1114548|PILER-CR
	AGATAAGCTAGGTAGTGACCCTGCTGGAAAAT
TACAGATTAACATTAACATGAGATGTATTTAAAT	GCTGAATCTGGTGAGGACAATGTTGATATAAC
AATTGATTAACATTAACATGAGATGTATTTAAATTTTGTGCAATACTATAGATATAGCAAGTGCAAGTTCGATTAACATTAACATGAGATGTATTTAAATCATCTGACACTAATAAAATAGAACTAGAGATTTACAGATTAACATTAACATGAGATGTATTTAAATCCTTCTGATGATATAACATTTGCTATAAGTTGTGGATTAACATTAACATGAGATGTATTTAAATGTTAAAAATTTTCACCCACAAGGAACTTTTATACAAGATTAACATTAACATGAGATGTATTTAAATAGTGAAAAAGAAAAGGAAATTAGAAAGAAAATAAGGATTAACATTAACATGAGATGTATTTAAATA	AGTCAGTTTATGTGTGGATTAATCCAAAAGCATT
GATTAACATTAACATGAGATGTATTTAAATT	GGACTTTCCTCCCAAGCTTATTATTTTTTAAAACA
GATTAACATTAACATGAGATGTATTTAAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP027286.1\|QBJ75077.1\|1102003_1103026_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
CP027286.1\|QBJ75087.1\|1118203_1118443_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370091
CP027286.1\|QBJ75091.1\|1123065_1124196_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227628
CP027286.1\|QBJ75083.1\|1108257_1109028_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP027286.1\|QBJ75093.1\|1125194_1125533_+\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ75086.1\|1115312_1116551_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP027286.1\|QBJ76607.1\|1111640_1112129_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP027286.1\|QBJ75080.1\|1104863_1105556_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP027286.1\|QBJ75078.1\|1103133_1104354_+\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
CP027286.1\|QBJ75089.1\|1119455_1120103_+\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ75084.1\|1112138_1113137_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP027286.1\|QBJ75088.1\|1118745_1119282_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
CP027286.1\|QBJ75085.1\|1113138_1113429_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP027286.1\|QBJ75082.1\|1107307_1108255_+\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP027286.1\|QBJ76608.1\|1117774_1118002_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
CP027286.1\|QBJ75079.1\|1104612_1104819_+\|HTH-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP027286.1\|QBJ76609.1\|1120167_1121919_+\|DUF4091-domain-containing-protein	unknown	unknown	gnl\|CDD\|379121
CP027286.1\|QBJ75081.1\|1105571_1107305_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
CP027286.1\|QBJ75090.1\|1122132_1123008_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987
CP027286.1\|QBJ75092.1\|1124351_1125140_+\|endonuclease	unknown	unknown	gnl\|CDD\|197317

Protein	Function_ID	Function_description	E-value
CP027286.1\|QBJ75077.1\|1102003_1103026_+\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	1.25177e-81
CP027286.1\|QBJ75087.1\|1118203_1118443_+\|hypothetical-protein	gnl\|CDD\|370091	pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric1 (pfam07064) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor.	0.00967207
CP027286.1\|QBJ75091.1\|1123065_1124196_-\|hypothetical-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	1.74785e-27
CP027286.1\|QBJ75083.1\|1108257_1109028_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.4825e-55
CP027286.1\|QBJ75086.1\|1115312_1116551_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.88675e-124
CP027286.1\|QBJ76607.1\|1111640_1112129_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.39091e-51
CP027286.1\|QBJ75080.1\|1104863_1105556_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.37897e-18
CP027286.1\|QBJ75078.1\|1103133_1104354_+\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
CP027286.1\|QBJ75084.1\|1112138_1113137_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.9438e-151
CP027286.1\|QBJ75088.1\|1118745_1119282_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	7.31748e-20
CP027286.1\|QBJ75085.1\|1113138_1113429_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.15641e-23
CP027286.1\|QBJ75082.1\|1107307_1108255_+\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.58835e-47
CP027286.1\|QBJ76608.1\|1117774_1118002_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	7.91482e-19
CP027286.1\|QBJ75079.1\|1104612_1104819_+\|HTH-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.60926e-08
CP027286.1\|QBJ76609.1\|1120167_1121919_+\|DUF4091-domain-containing-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	1.5191e-18
CP027286.1\|QBJ75081.1\|1105571_1107305_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	3.27202e-24
CP027286.1\|QBJ75090.1\|1122132_1123008_+\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	3.16681e-22
CP027286.1\|QBJ75092.1\|1124351_1125140_+\|endonuclease	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	3.70924e-106

>CP027286.1|QBJ75085.1|1113138_1113429_+|CRISPR-associated-endonuclease-Cas2
MKKQINYNYVFIFYDIKEERVNKVFKVCKKYLSHFQKSVFRGGITPSKLILLKKDLNKVIEKEEDFICIIKLLNGDVFGEEIIGVQGQTTGESLII
>CP027286.1|QBJ75084.1|1112138_1113137_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTKYITSMGELTRKDNSLCFRKDGKNVYIPVEGTSEIYCLNEISINTKLLDFISRNNITVHFFNYYEGYSGTFYPKNKYNSGKLLINQVKTFERNRIIIARSIVRGIGINIMEVLYHYYKHNKKEVKETIDWIKKDFLKKVDYIENINSLMALEGEVWQRFYSEFKNILPEDFIMNKRVKRPPDNPINAMISFGNSLLYTKTISAIYKTHLDQRISYLHEPSEGRFSLSLDISEVFKPIIVFKTIFELVNNRRIQVSKHFDKSVNYCLLNEDGRNIFIKAFEDRLESVFLHPKLKRKVTYRTAIKLDCYKLIKFIMEDKTFLPFNLKDGM
>CP027286.1|QBJ76607.1|1111640_1112129_+|CRISPR-associated-protein-Cas4
MKINGTLINYYFHCKRQCYLHGNRLNFEDNSENVKIGKALHEIKENKNTEIEIDNIKIDKLTKDYLTEIKKSDADPEAAKWQLIFYLNALNDKGIRRKGKLEFIEKNKTKNKIIYVELNSELIKELEKHIRDIKILINSNNVPDILNKSKCKRCAYYEYCYI
>CP027286.1|QBJ75083.1|1108257_1109028_+|type-I-B-CRISPR-associated-protein-Cas5
MEAIKFTLRGRTAFFKKPEVNSYLYFTYGHIHKVALVGIFGAILGYKGYNQMKKDDQYPEFYQKLKDIKISIVPNNKNGIIDKKINIFNNSVGYASQEKGGNLIIKEQWLENPSWEIYLLLNDDESQKIANALMDRTYIYLPYLGKNDHLAEITNIKRINNIKTIDRFIKIDSFFKKNEFKYKELDLDDLDDLDDLDDDNVTDEELIFKYEEMLPVGLDLQTNRYKLEGLVYTNKPIEKRLNCEVYEIEGKILTFI
>CP027286.1|QBJ75082.1|1107307_1108255_+|CRISPR-associated-protein
MNKRVYGLIGISSKMANWNADFSGYPKTTSKGEIFGSDKALKYPMKKLWDNSGEKVLYIKSMKLSKTKDSVVLVPRSLKERYEYIFGIEDLKKEKNTETVLKNLFDAVDVKNFGATFAEEGNNISITGAVQIGQGFNLYDETVADEQQILSPFRDASIKPGKEDKEEAKNSTLGTKIVTDEAHYCYPFTINPLSYKDYIDLGVTEGYTEKDYIKFKEVALNSATAFATNSKVGCENEFCIFIETEQTLYLPNLDNYISFEKSEDQNIIRFKATNILNEVKEKISNIEIYYNPYTTIVEADIEGAKYYNIITKKEV
>CP027286.1|QBJ75081.1|1105571_1107305_+|type-I-B-CRISPR-associated-protein-Cas8b/Csh1
MLSEIIDSFKRVFKDNLDEAILGSYVPTDGTYIFLKEDEHNNLKVIQKEEIKLNKKTKDVDRTINNFSLLAKADYYSKLTDMNKPIDSKKIIHSNNYLSFFVKKESLKNGKLTNEIIENYYNVLLNPISKYEKKSKAKELYIEIERELGEVNKDRIFKIKEWIKENIYKVEEDIEKKDYLKIFFIYDEDDFIKESKRYLIPNIYNNNDFNIKVDNEILGLPNDNMGLNSKKPYLENKTRKVKIPHLITQEEALFQKKVFDYLLNQSAQGFYNIYIGDEVIPLKDNETLNRDFNGYYIRLKKGKEAEIHNFDVISKYNPMLINPFEFINVLGINYETLYLNKKINWEYGFIDTRKEMQELINSIIFNNYLKTNYFSEDISIKENVLKRSILLSRAKLFDWFYKGNDYNIWPLLNKVSRDLMKSSIESGYSIKAMNQFNLRYSLKLYFEGGEEKMADILSKVKNDLREKIEVRDSSISNDNEYFFAIGQLANFFITRSKGKNKPLSLANPIINAKKDNIIKEKLKSLYKKYNYDINSSFIKFKNMYYMVLAYQVEGKINEDLIIAGYLSSSLLFEKKED
>CP027286.1|QBJ75080.1|1104863_1105556_+|CRISPR-associated-endoribonuclease-Cas6
MNNFEITVKVYLTKDILQEDCQQEISAILDRVLAENCDYLNFHKENYFKNYCFNSLYPLERDKVYKEDNIYSFQIRTNNIELAEYLSINLKNAFSNSIKILKVDIRKIPIKHIDKIFSITPLVIKTDNGYWKGLISLEDFERRIKENLIKKYNQITGEKIDEKFPLFVALELKNKKPIAIKFKGKTLLGDKISLKIADDELSQKIANLAIGSGLGEINARGYGYVNYRWL
>CP027286.1|QBJ75079.1|1104612_1104819_+|HTH-domain-containing-protein
MNMTGRVLIILRILSDKKIHTLEELSYKSEIPSSTIRRYINSFKDFGVEIESTRGPYGGYILKKFYYM
>CP027286.1|QBJ75078.1|1103133_1104354_+|peptidase-T
MKKVEERFLEYIKIDTKSDENTGLTPSTKGQLKLAEILAKELKEIGVDKVEISEHGYVYATVEKNCNKDIPTIGFIAHMDTAPDYCGSNVNPQIVKNYDGGDIKLNSEVTLSPKFSPELKNYIGKTLITTDGNTLLGADDKAGIAEIMTAIEYLLNNKEIKHGDIKIGFTPDEEIGEGADHFDVEGFKADFAYTLDGGAIGELEFENFNAAGVKVEINGVNVHPGYAKNKMINSIMVAHEFINKLPLNEVPEKTEKYEGFSHLTDIKGTIEKTTLDFIIRDFFADGFEDRKEKFKAIEKELNEVYGEGVVKVNIKEQYRNMKEKIEPIMHIVETAKKAMEEAGVAPKVKPIRGGTDGARLSYMGLPTPNLFAGGENFHGKYEYVPVESMEKAVDVILNIIRIYSER
>CP027286.1|QBJ75077.1|1102003_1103026_+|polysaccharide-deacetylase
MNNIERKSYNRKYKEKIKKCKTKHSNINKLKKQRKIRKLRNKIIFKLVMISLFTIMLIVIINNIGNYRNEKNNIVTTNFNDKKDTEFKQKEKKEIKKTHPREIMPNSNVTYEGMTYAMDASEVQSMIYGTYPGLKKYVFLTFDDGPSPNTEKVLDILKENNVKATFFVVGNRIEESAKAQETLKRIIKEGNAIANHTYTHNFSKLYPQNSINIDYFMEEVNKTNELIKKILGENFNTKVLRMPGGYISRKYYKDASLKAFDDRLNLEGIFSIDWNTLNGDAEGKDYTVEEMVNKVKEGSKDVNQSIVLMHDAYGKEKTVEALPEIINYFKSQGYQFRTIK
>CP027286.1|QBJ75086.1|1115312_1116551_+|IS256-family-transposase
MTRKIDTNFDYNEEIKRCKTIDDVMGKNGLIQRLVKDVLENILEGEMEEHLGRNKYERVEAVDQTKKNYRNGYSRKNLRSSFGDVDLDVPRDRNAEFEPQIIKKYETVCTELDKKIISLYAKGMSTSDIQAEIEDLYGITISPSMVSKITDKVLASAAEWQNRVLDKIYPIVYLDAMYFKVRSNGKIVNKAVYICLGYTMEGYKDILGIWVDEAEGAKFWLGICNDLKNRGVKEILIACMDGLKGIPQAIKTVFPSVNIQTCIVHQIRNSIKYIASKDKKAFMKDLKEVYKATTEELALAQLDNLKEIWGDKYGIVIDSWYNNWSNLSTFFDFSPTIRKMIYTTNILEGFNRQIRKFTKVRVIFPTDESLNKCVYLATMEILEKWTQPIHNWGATLAELSIIFEDQLKDELA
>CP027286.1|QBJ76608.1|1117774_1118002_+|hypothetical-protein
MKGCCYDNACAELFFLSLKKHFLYGRKFKTRAESKQAIVEYIELFYNAKRLHSTLGYKSPREYRKNYYNNLNKAA
>CP027286.1|QBJ75087.1|1118203_1118443_+|hypothetical-protein
MTGDLITANIKIKSTEYPCFSVSENSDNTDLEGNALINPSETREIHYVAEVPKTDATGQIEVTLTINGKNYSNKFLLDC
>CP027286.1|QBJ75088.1|1118745_1119282_+|DUF4825-domain-containing-protein
MRISNFKRLVILAVFMVLLGMVGCGKYIEQKEAINESKVNLTKVLKYKGSYVGDNSAIVNIINNLPANIYKEGVELQTTSKPYEITIQYKYFEDLDIRFEDGSFISSSLSQIMKNNALILLSLVKNVDIVNFNIDDGTIITYEGTDLINDNKDAFGNDLKEITKDKSSLENFIKTNKN
>CP027286.1|QBJ75089.1|1119455_1120103_+|hypothetical-protein
MYLIKNIKQIFDYKIKEFLALSGGLTLIFLLTRLDNPEFIDGYMIAILITISMIGRYNFVSEHIVKEDYIYLKKYKATLKYIISKNIVTLLLVISLVFIVFLLEFIITRATLSYEFYFESLILSILTIAFNNISFMFNNKTEKSTSDKFDEWTSIVLGFKSLINSLPSILIVFIILYFNKYLYNINLYDALIVEIMSIILLNFKLKNQFKVNLKN
>CP027286.1|QBJ76609.1|1120167_1121919_+|DUF4091-domain-containing-protein
MVKDVYLGASIGSTDFHYLQKNYNEIKLLNKTTWHDTAWIGDELNSKIVTWTKNSPVSNVTIASSDFVNKNGDIINSNNVEISWLKETLANIGRGNSSAPVELFPDIIHKSGSLNIEANKVSSAWVNISIPRDINTGIYNGTITVNAEGLEAPYVFDYSFEVLNLIQPLPKETNTQIEIWQHPYAVARYYDIPKEELFTERHFNYLRESLEEYRDMGGKGVIAHIVEEAWNHQSYDSDPSMVKWTKKSNGNFKFDYTDFDRWIQFNIDLGVINPKDGVGQIKCYSIVPWNNRIEYYNEVTGSKESISPTPGTSEWRIPWTEFLRDFMKHLEEKGWFKITYISMDERNMNDLRASVELIESIKNTNGESFKISSAMNYQSGSDYSFLDRIDDISIGLSHINHDLEDMRNMAKHRQERGLLTTIYTCTGDYPSSFTISDSSESAWTMWYSLSQNTDGFMRWSWDGWVENPLENVSYKYWEPGDPWFIYPAEKNSDSKTFYSTPRYERLKEGIRDINKAKYLMENSLELKRQVETLVQSLRRPNKGNNSYGSAVAATEMDRELTNNEVKRIRDGVNKLAKQYIKSK
>CP027286.1|QBJ75090.1|1122132_1123008_+|hypothetical-protein
MNNNLSRVRELKEIKKEPKTNLQILLAIILGVIVVFTTLKVIQKVVYPPEKIVEDFRAAMVNEDVEGVKNVIKVYDKRVEVNDENVKVLINYFKENKDELTSICNSLNNKNLRNKRENPIYLDKETGFSRLLGKHKVIINPIFIKVSSKINNTEIFINDKKQCTINKDETQEFGPLMPGKYDISAKYSTDYIETQDKVTIDRIKKFNDRSNYTMFKDIKKVILYTHLETAEIIVNGKDTGKTVKEINKILSPVNKDTKVQLKMMVDGKEVITDEEVVGDNDYIYFGELKNS
>CP027286.1|QBJ75091.1|1123065_1124196_-|hypothetical-protein
MFIKSYNSQTKELTLSIYNNDVALINEVRDISKAKLNSTIEYSDISKLIYENSVIIQGAEVSQINFNYKCYNDNNSKNKETICSKCLNTFIDAITIEAKSINSTDIRLYYLSGGIKWTSSYTLILKSQKLDLEAWINISNKSGISYNHANLKCIAGDVNISSSTSTPYSKTSYVASSSSENTSLENLEDYYIYNLKGLYNLENNSTKRIKSFLAEDISYSTLYDFGYYNNSADILIEFENTQSNNLGTPMPSGVINVYTTSGKTLAFLGSDSIKNTSIDENLSLNIGKAFDITCERKIIDYQKYDTYEFKEIELIISNAKNEEVPIKICYPIFAPWESTSSTENYSKDNNGNPCFMVNVSANDKKSIFFTYKVKIS
>CP027286.1|QBJ75092.1|1124351_1125140_+|endonuclease
MKNNFMTFNLKYDFTDDKENRWEDRAKRIVTVIKENNPICFGTQEGLIHMLKDINELLEEYSWFGEGREGNEEGEFNAIFYKREALELIENGQFWLSETPNIKGSISWKSGCKRICTWGVFKEKQYGNIFRIYNTHLDNASDLAREEGIKVILDFAKEKYDKDKLPFIITGDFNSYMEENLFKIIRSYNNENFNIKNSYNEVSHNIKGTFHDFKGGYSGGIIDYILFSKEISCNKINIDDRLINGGYPSDHYAVTANLNIEN
>CP027286.1|QBJ75093.1|1125194_1125533_+|hypothetical-protein
MGSDKKNLEGIIFIGISTIAWCIAGNISYFFIRNGIYNSLVHLVDIESSIIMVSLPLIAMAIGTFANYKIEVTEEKLYEINKKMLSFKLLNIIFIGYIAFTLFAVRNGKIIL

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Crispr_ID: CP027286_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027286_3

1116768-1117458

TypeI-B

II-B

Consensus_repeat	Method
GATTAACATTAACATGAGATGTATTTAAAT	CRISPRCasFinder
GATTAACATTAACATGAGATGTATTTAAAT	CRT

10 spacers

cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,WYL

The CRISPR arrays of CP027286_3

>merge|CP027286|3|1116768-1117458|CRISPRCasFinder,CRT
GATTAACATTAACATGAGATGTATTTAAATTAATTGAAACTAGTATCACTGATTCTTTTTTTTCTTGATTAACATTAACATGAGATGTATTTAAATAAAGGATTTCTTGTTCCGTATTTTTTAGATAAATTAGATTAACATTAACATGAGATGTATTTAAATGGCACTTGGTAAAATATACCTTTTGCTTAAACTCTGCGATTAACATTAACATGAGATGTATTTAAATTAAAATACCACTCTTCTATTAATCTTTGGCTTGTAGATTAACATTAACATGAGATGTATTTAAATATCTGCTTAGGATAGTCTTGTGTTTCTTCAAAGCTAGGATTAACATTAACATGAGATGTATTTAAATATTGATGGAATGGTTAATTGATTATAAGAGATTGAAGATTAACATTAACATGAGATGTATTTAAATCTTATCCATCTGCCCATACCAGTTATACCATTCCAGATTAACATTAACATGAGATGTAGTTAAATACATATTTAACTTTCAAAAGCAACTGATTGCAATTCGATTAACATTAACATGAGATGTATTTAAATATGGTAGGCAATATATTTGTTGGAACTTATACTAAAGGATTAACATTAACATGAGATGTATTTAAATGATTTATAGTTTTGACTATGATGATGAGTATATATAGATTAACATTAACATGAGATGTATTTAAAT

>CP027286|3|3|1116768-1117458|CRISPRCasFinder
GATTAACATTAACATGAGATGTATTTAAAT	TAATTGAAACTAGTATCACTGATTCTTTTTTTTCTT
GATTAACATTAACATGAGATGTATTTAAAT	AAAGGATTTCTTGTTCCGTATTTTTTAGATAAATTA
GATTAACATTAACATGAGATGTATTTAAAT	GGCACTTGGTAAAATATACCTTTTGCTTAAACTCTGC
GATTAACATTAACATGAGATGTATTTAAAT	TAAAATACCACTCTTCTATTAATCTTTGGCTTGTA
GATTAACATTAACATGAGATGTATTTAAAT	ATCTGCTTAGGATAGTCTTGTGTTTCTTCAAAGCTAG
GATTAACATTAACATGAGATGTATTTAAAT	ATTGATGGAATGGTTAATTGATTATAAGAGATTGAA
GATTAACATTAACATGAGATGTATTTAAAT	CTTATCCATCTGCCCATACCAGTTATACCATTCCA
GATTAACATTAACATGAGATGTAGTTAAAT	ACATATTTAACTTTCAAAAGCAACTGATTGCAATTC
GATTAACATTAACATGAGATGTATTTAAAT	ATGGTAGGCAATATATTTGTTGGAACTTATACTAAAG
GATTAACATTAACATGAGATGTATTTAAAT	GATTTATAGTTTTGACTATGATGATGAGTATATATA
GATTAACATTAACATGAGATGTATTTAAAT

>CP027286|3|2|1116768-1117458|CRT
GATTAACATTAACATGAGATGTATTTAAAT	TAATTGAAACTAGTATCACTGATTCTTTTTTTTCTT
GATTAACATTAACATGAGATGTATTTAAAT	AAAGGATTTCTTGTTCCGTATTTTTTAGATAAATTA
GATTAACATTAACATGAGATGTATTTAAAT	GGCACTTGGTAAAATATACCTTTTGCTTAAACTCTGC
GATTAACATTAACATGAGATGTATTTAAAT	TAAAATACCACTCTTCTATTAATCTTTGGCTTGTA
GATTAACATTAACATGAGATGTATTTAAAT	ATCTGCTTAGGATAGTCTTGTGTTTCTTCAAAGCTAG
GATTAACATTAACATGAGATGTATTTAAAT	ATTGATGGAATGGTTAATTGATTATAAGAGATTGAA
GATTAACATTAACATGAGATGTATTTAAAT	CTTATCCATCTGCCCATACCAGTTATACCATTCCA
GATTAACATTAACATGAGATGTAGTTAAAT	ACATATTTAACTTTCAAAAGCAACTGATTGCAATTC
GATTAACATTAACATGAGATGTATTTAAAT	ATGGTAGGCAATATATTTGTTGGAACTTATACTAAAG
GATTAACATTAACATGAGATGTATTTAAAT	GATTTATAGTTTTGACTATGATGATGAGTATATATA
GATTAACATTAACATGAGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP027286.1\|QBJ75087.1\|1118203_1118443_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370091
CP027286.1\|QBJ75091.1\|1123065_1124196_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227628
CP027286.1\|QBJ75094.1\|1125542_1126091_+\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ75083.1\|1108257_1109028_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP027286.1\|QBJ75093.1\|1125194_1125533_+\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ75086.1\|1115312_1116551_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
CP027286.1\|QBJ76607.1\|1111640_1112129_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP027286.1\|QBJ75080.1\|1104863_1105556_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP027286.1\|QBJ75078.1\|1103133_1104354_+\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
CP027286.1\|QBJ75089.1\|1119455_1120103_+\|hypothetical-protein	unknown	unknown	unknown
CP027286.1\|QBJ75084.1\|1112138_1113137_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP027286.1\|QBJ75088.1\|1118745_1119282_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
CP027286.1\|QBJ75085.1\|1113138_1113429_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP027286.1\|QBJ75082.1\|1107307_1108255_+\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP027286.1\|QBJ76608.1\|1117774_1118002_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
CP027286.1\|QBJ75079.1\|1104612_1104819_+\|HTH-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP027286.1\|QBJ76609.1\|1120167_1121919_+\|DUF4091-domain-containing-protein	unknown	unknown	gnl\|CDD\|379121
CP027286.1\|QBJ75081.1\|1105571_1107305_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
CP027286.1\|QBJ75090.1\|1122132_1123008_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987
CP027286.1\|QBJ75092.1\|1124351_1125140_+\|endonuclease	unknown	unknown	gnl\|CDD\|197317

Protein	Function_ID	Function_description	E-value
CP027286.1\|QBJ75087.1\|1118203_1118443_+\|hypothetical-protein	gnl\|CDD\|370091	pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric1 (pfam07064) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor.	0.00967207
CP027286.1\|QBJ75091.1\|1123065_1124196_-\|hypothetical-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	1.74785e-27
CP027286.1\|QBJ75083.1\|1108257_1109028_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.4825e-55
CP027286.1\|QBJ75086.1\|1115312_1116551_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.88675e-124
CP027286.1\|QBJ76607.1\|1111640_1112129_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.39091e-51
CP027286.1\|QBJ75080.1\|1104863_1105556_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.37897e-18
CP027286.1\|QBJ75078.1\|1103133_1104354_+\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
CP027286.1\|QBJ75084.1\|1112138_1113137_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.9438e-151
CP027286.1\|QBJ75088.1\|1118745_1119282_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	7.31748e-20
CP027286.1\|QBJ75085.1\|1113138_1113429_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.15641e-23
CP027286.1\|QBJ75082.1\|1107307_1108255_+\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.58835e-47
CP027286.1\|QBJ76608.1\|1117774_1118002_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	7.91482e-19
CP027286.1\|QBJ75079.1\|1104612_1104819_+\|HTH-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.60926e-08
CP027286.1\|QBJ76609.1\|1120167_1121919_+\|DUF4091-domain-containing-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	1.5191e-18
CP027286.1\|QBJ75081.1\|1105571_1107305_+\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	3.27202e-24
CP027286.1\|QBJ75090.1\|1122132_1123008_+\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	3.16681e-22
CP027286.1\|QBJ75092.1\|1124351_1125140_+\|endonuclease	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	3.70924e-106

>CP027286.1|QBJ75086.1|1115312_1116551_+|IS256-family-transposase
MTRKIDTNFDYNEEIKRCKTIDDVMGKNGLIQRLVKDVLENILEGEMEEHLGRNKYERVEAVDQTKKNYRNGYSRKNLRSSFGDVDLDVPRDRNAEFEPQIIKKYETVCTELDKKIISLYAKGMSTSDIQAEIEDLYGITISPSMVSKITDKVLASAAEWQNRVLDKIYPIVYLDAMYFKVRSNGKIVNKAVYICLGYTMEGYKDILGIWVDEAEGAKFWLGICNDLKNRGVKEILIACMDGLKGIPQAIKTVFPSVNIQTCIVHQIRNSIKYIASKDKKAFMKDLKEVYKATTEELALAQLDNLKEIWGDKYGIVIDSWYNNWSNLSTFFDFSPTIRKMIYTTNILEGFNRQIRKFTKVRVIFPTDESLNKCVYLATMEILEKWTQPIHNWGATLAELSIIFEDQLKDELA
>CP027286.1|QBJ75085.1|1113138_1113429_+|CRISPR-associated-endonuclease-Cas2
MKKQINYNYVFIFYDIKEERVNKVFKVCKKYLSHFQKSVFRGGITPSKLILLKKDLNKVIEKEEDFICIIKLLNGDVFGEEIIGVQGQTTGESLII
>CP027286.1|QBJ75084.1|1112138_1113137_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTKYITSMGELTRKDNSLCFRKDGKNVYIPVEGTSEIYCLNEISINTKLLDFISRNNITVHFFNYYEGYSGTFYPKNKYNSGKLLINQVKTFERNRIIIARSIVRGIGINIMEVLYHYYKHNKKEVKETIDWIKKDFLKKVDYIENINSLMALEGEVWQRFYSEFKNILPEDFIMNKRVKRPPDNPINAMISFGNSLLYTKTISAIYKTHLDQRISYLHEPSEGRFSLSLDISEVFKPIIVFKTIFELVNNRRIQVSKHFDKSVNYCLLNEDGRNIFIKAFEDRLESVFLHPKLKRKVTYRTAIKLDCYKLIKFIMEDKTFLPFNLKDGM
>CP027286.1|QBJ76607.1|1111640_1112129_+|CRISPR-associated-protein-Cas4
MKINGTLINYYFHCKRQCYLHGNRLNFEDNSENVKIGKALHEIKENKNTEIEIDNIKIDKLTKDYLTEIKKSDADPEAAKWQLIFYLNALNDKGIRRKGKLEFIEKNKTKNKIIYVELNSELIKELEKHIRDIKILINSNNVPDILNKSKCKRCAYYEYCYI
>CP027286.1|QBJ75083.1|1108257_1109028_+|type-I-B-CRISPR-associated-protein-Cas5
MEAIKFTLRGRTAFFKKPEVNSYLYFTYGHIHKVALVGIFGAILGYKGYNQMKKDDQYPEFYQKLKDIKISIVPNNKNGIIDKKINIFNNSVGYASQEKGGNLIIKEQWLENPSWEIYLLLNDDESQKIANALMDRTYIYLPYLGKNDHLAEITNIKRINNIKTIDRFIKIDSFFKKNEFKYKELDLDDLDDLDDLDDDNVTDEELIFKYEEMLPVGLDLQTNRYKLEGLVYTNKPIEKRLNCEVYEIEGKILTFI
>CP027286.1|QBJ75082.1|1107307_1108255_+|CRISPR-associated-protein
MNKRVYGLIGISSKMANWNADFSGYPKTTSKGEIFGSDKALKYPMKKLWDNSGEKVLYIKSMKLSKTKDSVVLVPRSLKERYEYIFGIEDLKKEKNTETVLKNLFDAVDVKNFGATFAEEGNNISITGAVQIGQGFNLYDETVADEQQILSPFRDASIKPGKEDKEEAKNSTLGTKIVTDEAHYCYPFTINPLSYKDYIDLGVTEGYTEKDYIKFKEVALNSATAFATNSKVGCENEFCIFIETEQTLYLPNLDNYISFEKSEDQNIIRFKATNILNEVKEKISNIEIYYNPYTTIVEADIEGAKYYNIITKKEV
>CP027286.1|QBJ75081.1|1105571_1107305_+|type-I-B-CRISPR-associated-protein-Cas8b/Csh1
MLSEIIDSFKRVFKDNLDEAILGSYVPTDGTYIFLKEDEHNNLKVIQKEEIKLNKKTKDVDRTINNFSLLAKADYYSKLTDMNKPIDSKKIIHSNNYLSFFVKKESLKNGKLTNEIIENYYNVLLNPISKYEKKSKAKELYIEIERELGEVNKDRIFKIKEWIKENIYKVEEDIEKKDYLKIFFIYDEDDFIKESKRYLIPNIYNNNDFNIKVDNEILGLPNDNMGLNSKKPYLENKTRKVKIPHLITQEEALFQKKVFDYLLNQSAQGFYNIYIGDEVIPLKDNETLNRDFNGYYIRLKKGKEAEIHNFDVISKYNPMLINPFEFINVLGINYETLYLNKKINWEYGFIDTRKEMQELINSIIFNNYLKTNYFSEDISIKENVLKRSILLSRAKLFDWFYKGNDYNIWPLLNKVSRDLMKSSIESGYSIKAMNQFNLRYSLKLYFEGGEEKMADILSKVKNDLREKIEVRDSSISNDNEYFFAIGQLANFFITRSKGKNKPLSLANPIINAKKDNIIKEKLKSLYKKYNYDINSSFIKFKNMYYMVLAYQVEGKINEDLIIAGYLSSSLLFEKKED
>CP027286.1|QBJ75080.1|1104863_1105556_+|CRISPR-associated-endoribonuclease-Cas6
MNNFEITVKVYLTKDILQEDCQQEISAILDRVLAENCDYLNFHKENYFKNYCFNSLYPLERDKVYKEDNIYSFQIRTNNIELAEYLSINLKNAFSNSIKILKVDIRKIPIKHIDKIFSITPLVIKTDNGYWKGLISLEDFERRIKENLIKKYNQITGEKIDEKFPLFVALELKNKKPIAIKFKGKTLLGDKISLKIADDELSQKIANLAIGSGLGEINARGYGYVNYRWL
>CP027286.1|QBJ75079.1|1104612_1104819_+|HTH-domain-containing-protein
MNMTGRVLIILRILSDKKIHTLEELSYKSEIPSSTIRRYINSFKDFGVEIESTRGPYGGYILKKFYYM
>CP027286.1|QBJ75078.1|1103133_1104354_+|peptidase-T
MKKVEERFLEYIKIDTKSDENTGLTPSTKGQLKLAEILAKELKEIGVDKVEISEHGYVYATVEKNCNKDIPTIGFIAHMDTAPDYCGSNVNPQIVKNYDGGDIKLNSEVTLSPKFSPELKNYIGKTLITTDGNTLLGADDKAGIAEIMTAIEYLLNNKEIKHGDIKIGFTPDEEIGEGADHFDVEGFKADFAYTLDGGAIGELEFENFNAAGVKVEINGVNVHPGYAKNKMINSIMVAHEFINKLPLNEVPEKTEKYEGFSHLTDIKGTIEKTTLDFIIRDFFADGFEDRKEKFKAIEKELNEVYGEGVVKVNIKEQYRNMKEKIEPIMHIVETAKKAMEEAGVAPKVKPIRGGTDGARLSYMGLPTPNLFAGGENFHGKYEYVPVESMEKAVDVILNIIRIYSER
>CP027286.1|QBJ76608.1|1117774_1118002_+|hypothetical-protein
MKGCCYDNACAELFFLSLKKHFLYGRKFKTRAESKQAIVEYIELFYNAKRLHSTLGYKSPREYRKNYYNNLNKAA
>CP027286.1|QBJ75087.1|1118203_1118443_+|hypothetical-protein
MTGDLITANIKIKSTEYPCFSVSENSDNTDLEGNALINPSETREIHYVAEVPKTDATGQIEVTLTINGKNYSNKFLLDC
>CP027286.1|QBJ75088.1|1118745_1119282_+|DUF4825-domain-containing-protein
MRISNFKRLVILAVFMVLLGMVGCGKYIEQKEAINESKVNLTKVLKYKGSYVGDNSAIVNIINNLPANIYKEGVELQTTSKPYEITIQYKYFEDLDIRFEDGSFISSSLSQIMKNNALILLSLVKNVDIVNFNIDDGTIITYEGTDLINDNKDAFGNDLKEITKDKSSLENFIKTNKN
>CP027286.1|QBJ75089.1|1119455_1120103_+|hypothetical-protein
MYLIKNIKQIFDYKIKEFLALSGGLTLIFLLTRLDNPEFIDGYMIAILITISMIGRYNFVSEHIVKEDYIYLKKYKATLKYIISKNIVTLLLVISLVFIVFLLEFIITRATLSYEFYFESLILSILTIAFNNISFMFNNKTEKSTSDKFDEWTSIVLGFKSLINSLPSILIVFIILYFNKYLYNINLYDALIVEIMSIILLNFKLKNQFKVNLKN
>CP027286.1|QBJ76609.1|1120167_1121919_+|DUF4091-domain-containing-protein
MVKDVYLGASIGSTDFHYLQKNYNEIKLLNKTTWHDTAWIGDELNSKIVTWTKNSPVSNVTIASSDFVNKNGDIINSNNVEISWLKETLANIGRGNSSAPVELFPDIIHKSGSLNIEANKVSSAWVNISIPRDINTGIYNGTITVNAEGLEAPYVFDYSFEVLNLIQPLPKETNTQIEIWQHPYAVARYYDIPKEELFTERHFNYLRESLEEYRDMGGKGVIAHIVEEAWNHQSYDSDPSMVKWTKKSNGNFKFDYTDFDRWIQFNIDLGVINPKDGVGQIKCYSIVPWNNRIEYYNEVTGSKESISPTPGTSEWRIPWTEFLRDFMKHLEEKGWFKITYISMDERNMNDLRASVELIESIKNTNGESFKISSAMNYQSGSDYSFLDRIDDISIGLSHINHDLEDMRNMAKHRQERGLLTTIYTCTGDYPSSFTISDSSESAWTMWYSLSQNTDGFMRWSWDGWVENPLENVSYKYWEPGDPWFIYPAEKNSDSKTFYSTPRYERLKEGIRDINKAKYLMENSLELKRQVETLVQSLRRPNKGNNSYGSAVAATEMDRELTNNEVKRIRDGVNKLAKQYIKSK
>CP027286.1|QBJ75090.1|1122132_1123008_+|hypothetical-protein
MNNNLSRVRELKEIKKEPKTNLQILLAIILGVIVVFTTLKVIQKVVYPPEKIVEDFRAAMVNEDVEGVKNVIKVYDKRVEVNDENVKVLINYFKENKDELTSICNSLNNKNLRNKRENPIYLDKETGFSRLLGKHKVIINPIFIKVSSKINNTEIFINDKKQCTINKDETQEFGPLMPGKYDISAKYSTDYIETQDKVTIDRIKKFNDRSNYTMFKDIKKVILYTHLETAEIIVNGKDTGKTVKEINKILSPVNKDTKVQLKMMVDGKEVITDEEVVGDNDYIYFGELKNS
>CP027286.1|QBJ75091.1|1123065_1124196_-|hypothetical-protein
MFIKSYNSQTKELTLSIYNNDVALINEVRDISKAKLNSTIEYSDISKLIYENSVIIQGAEVSQINFNYKCYNDNNSKNKETICSKCLNTFIDAITIEAKSINSTDIRLYYLSGGIKWTSSYTLILKSQKLDLEAWINISNKSGISYNHANLKCIAGDVNISSSTSTPYSKTSYVASSSSENTSLENLEDYYIYNLKGLYNLENNSTKRIKSFLAEDISYSTLYDFGYYNNSADILIEFENTQSNNLGTPMPSGVINVYTTSGKTLAFLGSDSIKNTSIDENLSLNIGKAFDITCERKIIDYQKYDTYEFKEIELIISNAKNEEVPIKICYPIFAPWESTSSTENYSKDNNGNPCFMVNVSANDKKSIFFTYKVKIS
>CP027286.1|QBJ75092.1|1124351_1125140_+|endonuclease
MKNNFMTFNLKYDFTDDKENRWEDRAKRIVTVIKENNPICFGTQEGLIHMLKDINELLEEYSWFGEGREGNEEGEFNAIFYKREALELIENGQFWLSETPNIKGSISWKSGCKRICTWGVFKEKQYGNIFRIYNTHLDNASDLAREEGIKVILDFAKEKYDKDKLPFIITGDFNSYMEENLFKIIRSYNNENFNIKNSYNEVSHNIKGTFHDFKGGYSGGIIDYILFSKEISCNKINIDDRLINGGYPSDHYAVTANLNIEN
>CP027286.1|QBJ75093.1|1125194_1125533_+|hypothetical-protein
MGSDKKNLEGIIFIGISTIAWCIAGNISYFFIRNGIYNSLVHLVDIESSIIMVSLPLIAMAIGTFANYKIEVTEEKLYEINKKMLSFKLLNIIFIGYIAFTLFAVRNGKIIL
>CP027286.1|QBJ75094.1|1125542_1126091_+|hypothetical-protein
MEITYIFICILKRKIYSLELNDIQMRWRKAYDFPGSEETQSSILWRMKICIYPHVYVPFKKRLKGIRVFNWIFMLIWILSCKGNIILSSFIIIVFLSDILYIIDIVLGLYTKTTGLCTAINSYERKGVIYYTAYITDYENKREIKVKTRDICYISERDMVTVVYSSIGKRVIEVEGMRMDIL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027286_1	1.1\|391837\|28\|CP027286\|CRISPRCasFinder	391837-391864	28	AP014333	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C55, * SEQUENCING IN PROGRESS *	176-203	6	0.786
CP027286_1	1.1\|391837\|28\|CP027286\|CRISPRCasFinder	391837-391864	28	NZ_AP018256	Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome	20366-20393	6	0.786
CP027286_2	2.3\|1113759\|37\|CP027286\|CRISPRCasFinder,CRT	1113759-1113795	37	GU233956	Bacillus phage 11143, partial sequence	909-945	6	0.838
CP027286_1	1.1\|391837\|28\|CP027286\|CRISPRCasFinder	391837-391864	28	CAJDKA010000002	Enterococcus phage 163 genome assembly, contig: phage163-genome, whole genome shotgun sequence	140826-140853	7	0.75
CP027286_1	1.1\|391837\|28\|CP027286\|CRISPRCasFinder	391837-391864	28	MN241318	Enterococcus phage PEf771, complete genome	76284-76311	7	0.75
CP027286_1	1.1\|391837\|28\|CP027286\|CRISPRCasFinder	391837-391864	28	NZ_CP006904	Clostridium botulinum 202F plasmid pCBI, complete sequence	23073-23100	7	0.75
CP027286_2	2.3\|1113759\|37\|CP027286\|CRISPRCasFinder,CRT	1113759-1113795	37	NZ_CP026602	Clostridiaceae bacterium 14S0207 plasmid unnamed2, complete sequence	9474-9510	8	0.784
CP027286_2	2.12\|1114352\|35\|CP027286\|CRISPRCasFinder,CRT	1114352-1114386	35	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	367216-367250	8	0.771
CP027286_2	2.20\|1114876\|36\|CP027286\|CRISPRCasFinder,CRT	1114876-1114911	36	MN693712	Marine virus AFVG_250M462, complete genome	26202-26237	8	0.778
CP027286_2	2.12\|1114352\|35\|CP027286\|CRISPRCasFinder,CRT	1114352-1114386	35	NC_010858	Campylobacter fetus subsp. venerealis plasmid pCFV108, complete sequence	1505-1539	9	0.743
CP027286_2	2.25\|1113958\|32\|CP027286\|PILER-CR	1113958-1113989	32	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1701388-1701419	9	0.719
CP027286_2	2.20\|1114876\|36\|CP027286\|CRISPRCasFinder,CRT	1114876-1114911	36	MG945286	UNVERIFIED: Microviridae sp. isolate 12118-1602, complete genome	1982-2017	10	0.722
CP027286_2	2.26\|1114024\|32\|CP027286\|PILER-CR	1114024-1114055	32	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	160967-160998	10	0.688

1. spacer 1.1|391837|28|CP027286|CRISPRCasFinder matches to AP014333 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C55, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

taggcaacagaaaaacctaaaagatttg	CRISPR spacer
gatttaacagaaaaacctaaaagttttt	Protospacer
 *  .****************** ***

2. spacer 1.1|391837|28|CP027286|CRISPRCasFinder matches to NZ_AP018256 (Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome) position: , mismatch: 6, identity: 0.786

taggcaacagaaaaacctaaaagatttg	CRISPR spacer
caaccaacagaacaacctaaaatatttc	Protospacer
.*. ******** ********* ****

3. spacer 2.3|1113759|37|CP027286|CRISPRCasFinder,CRT matches to GU233956 (Bacillus phage 11143, partial sequence) position: , mismatch: 6, identity: 0.838

caggagtcgttgtatttgatgaaatacatgaatatga	CRISPR spacer
atggtgcagttgtatttgatgaaatacatcaatatga	Protospacer
  ** *. ********************* *******

4. spacer 1.1|391837|28|CP027286|CRISPRCasFinder matches to CAJDKA010000002 (Enterococcus phage 163 genome assembly, contig: phage163-genome, whole genome shotgun sequence) position: , mismatch: 7, identity: 0.75

taggcaacagaaaaacctaaaagatttg	CRISPR spacer
taggcaacagaaaaacctaatattcaaa	Protospacer
******************** *  .  .

5. spacer 1.1|391837|28|CP027286|CRISPRCasFinder matches to MN241318 (Enterococcus phage PEf771, complete genome) position: , mismatch: 7, identity: 0.75

taggcaacagaaaaacctaaaagatttg	CRISPR spacer
taggcaacagaaaaacctaatattcaaa	Protospacer
******************** *  .  .

6. spacer 1.1|391837|28|CP027286|CRISPRCasFinder matches to NZ_CP006904 (Clostridium botulinum 202F plasmid pCBI, complete sequence) position: , mismatch: 7, identity: 0.75

taggcaacagaaaaacctaaaagatttg	CRISPR spacer
atggcaagagaaaaacctgaaagatcat	Protospacer
  ***** **********.******.

7. spacer 2.3|1113759|37|CP027286|CRISPRCasFinder,CRT matches to NZ_CP026602 (Clostridiaceae bacterium 14S0207 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.784

caggagt-----cgttgtatttgatgaaatacatgaatatga	CRISPR spacer
-----gtgcttgccttatttttgatgaaatacatgaatatga	Protospacer
     **     * **.* ***********************

8. spacer 2.12|1114352|35|CP027286|CRISPRCasFinder,CRT matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

agtgaaaaagaaaaggaaattagaaagaaaataag	CRISPR spacer
acagattttgaagaggaaattaaaaagaaaataag	Protospacer
*  **    ***.*********.************

9. spacer 2.20|1114876|36|CP027286|CRISPRCasFinder,CRT matches to MN693712 (Marine virus AFVG_250M462, complete genome) position: , mismatch: 8, identity: 0.778

aattaaagatactaaaaaaggttttatagacttcac---	CRISPR spacer
aattaaagatactcaaaaagatttta---attttagatg	Protospacer
************* ******.*****   *.**.*

10. spacer 2.12|1114352|35|CP027286|CRISPRCasFinder,CRT matches to NC_010858 (Campylobacter fetus subsp. venerealis plasmid pCFV108, complete sequence) position: , mismatch: 9, identity: 0.743

agtgaaaaagaaaaggaaattagaaagaaaataag	CRISPR spacer
agacaaaaataaaagaaaattagaaagaactatac	Protospacer
**  ***** *****.*************    *

11. spacer 2.25|1113958|32|CP027286|PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

agataagctaggtagtgaccctgctggaaaat	CRISPR spacer
taatatgctaggtagtgaccttgctgctcagg	Protospacer
 .*** **************.*****   *.

12. spacer 2.20|1114876|36|CP027286|CRISPRCasFinder,CRT matches to MG945286 (UNVERIFIED: Microviridae sp. isolate 12118-1602, complete genome) position: , mismatch: 10, identity: 0.722

aattaaagatactaaaaaaggttttatagacttcac	CRISPR spacer
aattaaagatactaaagtaggttttatgcaaccttt	Protospacer
****************. *********. * ... .

13. spacer 2.26|1114024|32|CP027286|PILER-CR matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 10, identity: 0.688

gctgaatctggtgaggacaatgttgatataac	CRISPR spacer
attgaatctggtgagtacaaggttgaatcttt	Protospacer
..************* **** *****  .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1073439 : 1086520

Cyanophage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ75056.1\|1073439_1074378_+	SPFH/Band 7/PHB domain protein	A0A2K9KZA2	Tupanvirus	1.7e-23	34.9
QBJ75057.1\|1074443_1074854_+	hypothetical protein	NA	NA	NA	NA
QBJ75058.1\|1075143_1075299_+	cytochrome C551	NA	NA	NA	NA
QBJ75059.1\|1075603_1075759_+	cytochrome C551	NA	NA	NA	NA
QBJ75060.1\|1075992_1076619_-	hypothetical protein	NA	NA	NA	NA
QBJ75061.1\|1076967_1080714_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.4e-28	24.4
QBJ75062.1\|1080726_1081206_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.8e-29	49.0
QBJ75063.1\|1081205_1081910_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	2.4e-43	42.1
QBJ75064.1\|1081962_1083390_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.6e-57	33.3
QBJ75065.1\|1083399_1084401_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	5.3e-68	45.9
QBJ75066.1\|1084388_1085000_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.6e-22	36.4
QBJ75067.1\|1085017_1086520_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	9.1e-64	45.2

DBSCAN-SWA_2

1529110 : 1537827

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ75451.1\|1529110_1530271_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	3.5e-07	29.4
QBJ75452.1\|1530409_1530988_+	DUF2953 domain-containing protein	NA	NA	NA	NA
QBJ75453.1\|1530997_1531498_+	sporulation protein YtfJ	NA	NA	NA	NA
QBJ75454.1\|1531557_1532169_-	segregation/condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	5.2e-18	31.5
QBJ75455.1\|1532161_1532905_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.0e-07	36.0
QBJ75456.1\|1533015_1534269_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.5e-32	28.6
QBJ75457.1\|1534368_1535673_-	pyrimidine-nucleoside phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.9e-130	57.6
QBJ75458.1\|1535734_1536901_-	phosphopentomutase	NA	NA	NA	NA
QBJ75459.1\|1536948_1537827_-	recombinase XerD	A0A142F1N9	Bacillus_phage	2.0e-23	26.7

DBSCAN-SWA_3

1793828 : 1828787

Clostridium_phage(47.37%)

tail,transposase,coat,integrase,portal

attL 1798524:1798542|attR 1824189:1824207

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ75693.1\|1793828_1794080_+\|coat	spore coat protein	NA	NA	NA	NA
QBJ75694.1\|1794184_1795240_-	hypothetical protein	A0A1L6BY22	Clostridium_phage	1.9e-20	38.6
QBJ75695.1\|1795310_1795718_-	cobalt ABC transporter permease	I2E8W8	Clostridium_phage	5.0e-25	46.8
QBJ75696.1\|1795737_1795971_-	hemolysin XhlA	NA	NA	NA	NA
QBJ75697.1\|1795981_1797835_-	SGNH/GDSL hydrolase family protein	A0A0S2SXG8	Bacillus_phage	8.7e-16	21.9
QBJ75698.1\|1797836_1798115_-	hypothetical protein	NA	NA	NA	NA
QBJ75699.1\|1798115_1799549_-	lysin	A0A1B2APX2	Phage_Wrath	6.8e-85	44.4
1798524:1798542	attL	NA	NA	NA	NA
QBJ75700.1\|1799548_1800253_-\|tail	phage tail protein	A0A1B2APY0	Phage_Wrath	1.4e-38	39.2
QBJ75701.1\|1800249_1803009_-\|tail	phage tail tape measure protein	A0A0U4IIN6	Exiguobacterium_phage	3.0e-81	52.6
QBJ76632.1\|1803008_1803314_-	hypothetical protein	NA	NA	NA	NA
QBJ75702.1\|1803322_1803625_-	hypothetical protein	NA	NA	NA	NA
QBJ75703.1\|1803695_1804253_-	hypothetical protein	NA	NA	NA	NA
QBJ75704.1\|1804253_1804607_-	hypothetical protein	NA	NA	NA	NA
QBJ75705.1\|1804607_1805018_-	hypothetical protein	A0A0A7AQU9	Bacillus_phage	6.6e-09	40.2
QBJ75706.1\|1805010_1805325_-	hypothetical protein	NA	NA	NA	NA
QBJ75707.1\|1805321_1805642_-	hypothetical protein	NA	NA	NA	NA
QBJ75708.1\|1805685_1806573_-	hypothetical protein	A0A0A7AQF5	Bacillus_phage	2.0e-74	52.7
QBJ75709.1\|1806588_1807182_-	hypothetical protein	A0A0A7S0J5	Clostridium_phage	1.5e-25	47.4
QBJ75710.1\|1807369_1807645_-	hypothetical protein	NA	NA	NA	NA
QBJ75711.1\|1807858_1808170_-	hypothetical protein	NA	NA	NA	NA
QBJ75712.1\|1808162_1809521_-	hypothetical protein	H7BWE7	unidentified_phage	7.5e-25	33.8
QBJ75713.1\|1809510_1810974_-\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	8.8e-96	41.0
QBJ75714.1\|1811551_1812190_-\|integrase	integrase	F6K8Q2	Clostridium_phage	2.6e-28	40.6
QBJ75715.1\|1812578_1812968_-	nitroreductase	A0A0A7RTL7	Clostridium_phage	8.5e-22	40.2
QBJ75716.1\|1813349_1813580_-	hypothetical protein	NA	NA	NA	NA
QBJ75717.1\|1813566_1813764_-	hypothetical protein	NA	NA	NA	NA
QBJ75718.1\|1813765_1815070_-	replicative DNA helicase	O80281	Escherichia_phage	1.0e-79	41.8
QBJ75719.1\|1816079_1816571_-	transcriptional regulator	A0A2K9V3J3	Faecalibacterium_phage	3.9e-24	40.2
QBJ75720.1\|1816750_1816942_-	hypothetical protein	NA	NA	NA	NA
QBJ75721.1\|1817291_1817486_-	XRE family transcriptional regulator	NA	NA	NA	NA
QBJ75722.1\|1817655_1818030_+	XRE family transcriptional regulator	A0A0A8WJ60	Clostridium_phage	6.9e-13	40.8
QBJ75723.1\|1819093_1820053_+	hypothetical protein	NA	NA	NA	NA
QBJ75724.1\|1820062_1821820_-	DUF2326 domain-containing protein	NA	NA	NA	NA
QBJ75725.1\|1821773_1822037_-	hypothetical protein	NA	NA	NA	NA
QBJ75726.1\|1822259_1822718_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTX7	Clostridium_phage	1.9e-33	50.7
QBJ75727.1\|1822791_1824405_+	recombinase family protein	A0A1L2BY67	Clostridium_phage	9.4e-91	39.7
1824189:1824207	attR	NA	NA	NA	NA
QBJ76633.1\|1824446_1824647_-	hypothetical protein	NA	NA	NA	NA
QBJ75728.1\|1824855_1825827_-	acyltransferase	NA	NA	NA	NA
QBJ75729.1\|1825967_1826342_+	CidA/LrgA family protein	NA	NA	NA	NA
QBJ75730.1\|1826341_1827046_+	LrgB family protein	NA	NA	NA	NA
QBJ76634.1\|1827158_1828787_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.7e-55	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027286

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection