CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029539	Aquitalea sp. USM4 chromosome, complete genome	0 crisprs	WYL,DEDDh,csa3,cas3,DinG	0	0	4	0
CP029540	Aquitalea sp. USM4 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

884954 : 893929

Caulobacter_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ77360.1\|884954_886736_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.3e-74	36.9
QBJ77361.1\|886798_887245_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.5e-25	48.6
QBJ77362.1\|887351_887564_-	30S ribosomal protein S21	NA	NA	NA	NA
QBJ77363.1\|887695_888490_-	thiazole synthase	NA	NA	NA	NA
QBJ77364.1\|888514_888715_-	thiamine biosynthesis protein ThiS	NA	NA	NA	NA
QBJ77365.1\|888718_890875_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9L285	Tupanvirus	1.9e-09	34.8
QBJ77366.1\|890898_891105_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
QBJ77367.1\|891175_891805_-	guanylate kinase	A0A218KC48	Bacillus_phage	1.6e-17	36.6
QBJ77368.1\|891972_893271_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.8e-68	39.3
QBJ77369.1\|893371_893929_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.8e-32	41.2

DBSCAN-SWA_2

2194148 : 2201012

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ78426.1\|2194148_2194697_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.7e-52	60.9
QBJ78427.1\|2194712_2195582_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.9e-102	63.4
QBJ78428.1\|2195598_2196492_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.5e-25	33.2
QBJ78429.1\|2196488_2197553_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.9e-90	48.3
QBJ78430.1\|2197753_2198854_+	glycosyl transferase	NA	NA	NA	NA
QBJ78431.1\|2199026_2199314_+	co-chaperone GroES	A0A221S308	uncultured_virus	1.1e-15	44.6
QBJ78432.1\|2199368_2201012_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	2.7e-178	64.4

DBSCAN-SWA_3

2701429 : 2710887

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ78822.1\|2701429_2703007_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	4.7e-18	34.6
QBJ78823.1\|2703072_2703429_-	hypothetical protein	NA	NA	NA	NA
QBJ78824.1\|2703425_2703881_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.8e-23	41.0
QBJ78825.1\|2704059_2704497_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
QBJ78826.1\|2704489_2704798_+	RnfH family protein	NA	NA	NA	NA
QBJ78827.1\|2704834_2706628_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	4.1e-18	36.5
QBJ80340.1\|2706704_2706995_-	cell division protein FtsB	NA	NA	NA	NA
QBJ78828.1\|2707003_2708287_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.0e-148	62.7
QBJ78829.1\|2708392_2709244_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.3e-48	40.3
QBJ78830.1\|2709246_2710887_-	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.3e-159	54.1

DBSCAN-SWA_4

3168189 : 3176987

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ79195.1\|3168189_3168513_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.0e-12	38.0
QBJ79196.1\|3168633_3169749_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.5e-87	46.1
QBJ79197.1\|3170213_3172115_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	7.1e-130	39.3
QBJ79198.1\|3172153_3172678_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-12	34.6
QBJ79199.1\|3172834_3173032_+	50S ribosomal protein L35	NA	NA	NA	NA
QBJ79200.1\|3173044_3173401_+	50S ribosomal protein L20	NA	NA	NA	NA
QBJ79201.1\|3173611_3174595_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	5.8e-35	38.1
QBJ79202.1\|3174614_3176987_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	3.1e-05	28.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029540

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12674 : 33619

uncultured_virus(20.0%)

plate,tail,terminase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBJ80504.1\|12674_13799_-\|plate	baseplate protein	B3GAJ9	uncultured_virus	3.2e-45	38.8
QBJ80505.1\|13800_14166_-\|tail	phage tail protein	NA	NA	NA	NA
QBJ80506.1\|14168_14813_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
QBJ80507.1\|14809_15916_-	rhs element Vgr protein	NA	NA	NA	NA
QBJ80508.1\|15915_16890_-	hypothetical protein	NA	NA	NA	NA
QBJ80509.1\|16893_18795_-	hypothetical protein	A4PE52	Ralstonia_virus	1.4e-24	24.4
QBJ80510.1\|18830_19043_+	hypothetical protein	NA	NA	NA	NA
QBJ80511.1\|19240_20059_-	hypothetical protein	B6SD63	Bacteriophage	1.7e-27	57.8
QBJ80512.1\|20285_20765_-	hypothetical protein	NA	NA	NA	NA
QBJ80513.1\|20942_21341_-	hypothetical protein	NA	NA	NA	NA
QBJ80514.1\|21430_21856_-	hypothetical protein	NA	NA	NA	NA
QBJ80515.1\|21907_23467_-\|tail	phage tail protein	B3GAJ6	uncultured_virus	8.2e-92	43.7
QBJ80516.1\|23682_24501_-	hypothetical protein	NA	NA	NA	NA
QBJ80517.1\|24502_25141_-	hypothetical protein	NA	NA	NA	NA
QBJ80518.1\|25141_25540_-	hypothetical protein	NA	NA	NA	NA
QBJ80519.1\|25749_26901_-\|coat	P22 coat - protein 5 family protein	W6EBZ8	Rhizobium_phage	4.1e-88	49.6
QBJ80520.1\|26967_27720_-	hypothetical protein	A0A0S2SY92	Pseudomonas_phage	2.3e-52	51.6
QBJ80558.1\|27814_29146_-	DNA-binding protein	A0A0H5AWC7	Pseudomonas_phage	1.5e-94	44.1
QBJ80521.1\|29201_30476_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	4.0e-153	63.2
QBJ80522.1\|30462_31221_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	2.0e-35	43.3
QBJ80523.1\|31294_31684_-	hypothetical protein	NA	NA	NA	NA
QBJ80524.1\|31674_31857_-	hypothetical protein	NA	NA	NA	NA
QBJ80525.1\|31853_32102_-	hypothetical protein	NA	NA	NA	NA
QBJ80526.1\|32782_33283_-	hypothetical protein	NA	NA	NA	NA
QBJ80527.1\|33301_33619_-	hypothetical protein	F8TUJ6	EBPR_podovirus	2.0e-13	44.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029539

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029540

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection