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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035010 Shigella sonnei strain LC1477/18 plasmid pLC1477_18-2, complete sequence 0 crisprs NA 0 0 0 0
CP035011 Shigella sonnei strain LC1477/18 plasmid pLC1477_18-3, complete sequence 0 crisprs NA 0 0 0 0
CP035009 Shigella sonnei strain LC1477/18 plasmid pLC1477_18-1, complete sequence 0 crisprs NA 0 0 0 0
CP035008 Shigella sonnei strain LC1477/18 chromosome, complete genome 5 crisprs cas3,cas7,cas5,cas6e,cas2,csa3,DEDDh,DinG,TnsE_C 0 3 17 0

Results visualization

1. CP035008
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035008_1 1407457-1407574 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035008_3 2867709-2867857 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035008_4 3016561-3016705 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035008_5 3754351-3754483 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035008_6 3763188-3763317 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035008_2 2.1|2703249|40|CP035008|CRISPRCasFinder 2703249-2703288 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
CP035008_5 5.1|3754368|42|CP035008|PILER-CR 3754368-3754409 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
CP035008_5 5.2|3754427|40|CP035008|PILER-CR 3754427-3754466 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 0 1.0

1. spacer 2.1|2703249|40|CP035008|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 5.1|3754368|42|CP035008|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 5.2|3754427|40|CP035008|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

catggcgtagaaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
****************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 23302 : 70827 38 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_2 790629 : 798570 8 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_3 841441 : 1024321 170 Enterobacteria_phage(42.19%) holin,terminase,plate,tRNA,transposase,protease,tail,head,portal NA
DBSCAN-SWA_4 1192372 : 1333464 116 Enterobacteria_phage(52.94%) tRNA,transposase,tail,integrase,capsid,lysis,head,portal attL 1239763:1239822|attR 1288653:1289419
DBSCAN-SWA_5 1549451 : 1556890 7 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_6 1790147 : 1846876 52 Escherichia_phage(32.0%) holin,tail,transposase,capsid NA
DBSCAN-SWA_7 1946695 : 1957902 10 Escherichia_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_8 2142107 : 2147829 11 Escherichia_phage(57.14%) NA NA
DBSCAN-SWA_9 2399410 : 2463050 51 Acinetobacter_phage(12.5%) tRNA,transposase,protease,tail,integrase attL 2418879:2418938|attR 2443897:2444409
DBSCAN-SWA_10 2467450 : 2472101 8 Enterobacteria_phage(57.14%) NA NA
DBSCAN-SWA_11 2709449 : 2757743 38 Acidithiobacillus_phage(22.22%) tail,transposase,protease NA
DBSCAN-SWA_12 2973783 : 3032096 50 Salmonella_phage(25.0%) terminase,transposase,tail,integrase,head attL 2983977:2984011|attR 3016511:3016545
DBSCAN-SWA_13 3036269 : 3046658 15 Escherichia_phage(27.27%) integrase,transposase attL 3044559:3044573|attR 3053537:3053551
DBSCAN-SWA_14 3451816 : 3531353 58 Enterobacteria_phage(21.43%) plate,transposase NA
DBSCAN-SWA_15 3576013 : 3650056 59 Shigella_phage(18.18%) tRNA,protease,transposase NA
DBSCAN-SWA_16 3989171 : 4053508 53 Vibrio_phage(14.29%) tRNA,protease,transposase NA
DBSCAN-SWA_17 4473477 : 4529813 42 Enterobacteria_phage(12.5%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage