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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP036532 Roseitalea porphyridii strain MA7-20 chromosome, complete genome 2 crisprs DEDDh,cas3,csa3,WYL 0 2 3 0

Results visualization

1. CP036532
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036532_4 1306316-1306405 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036532_5 1906018-1906137 Unclear NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP036532_3 3.1|836270|30|CP036532|CRISPRCasFinder 836270-836299 30 MN694508 Marine virus AFVG_250M817, complete genome 17663-17692 6 0.8
CP036532_3 3.1|836270|30|CP036532|CRISPRCasFinder 836270-836299 30 NZ_CP011450 Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence 330776-330805 7 0.767
CP036532_5 5.2|1906086|28|CP036532|CRISPRCasFinder 1906086-1906113 28 NZ_CP025981 Escherichia marmotae strain HT073016 plasmid pEM76, complete sequence 3748-3775 7 0.75

1. spacer 3.1|836270|30|CP036532|CRISPRCasFinder matches to MN694508 (Marine virus AFVG_250M817, complete genome) position: , mismatch: 6, identity: 0.8

atcggtcgcggcttcaccttcagcggcggt	CRISPR spacer
ttcatcggcggcttcacctacagcggcggt	Protospacer
 **. . ************ **********

2. spacer 3.1|836270|30|CP036532|CRISPRCasFinder matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atcggtcgcggcttcaccttcagcggcggt	CRISPR spacer
aacaccggcggcttcaccttcagcggcgcg	Protospacer
* *. . *********************  

3. spacer 5.2|1906086|28|CP036532|CRISPRCasFinder matches to NZ_CP025981 (Escherichia marmotae strain HT073016 plasmid pEM76, complete sequence) position: , mismatch: 7, identity: 0.75

agcgggaattttggtgggattttcaggt	CRISPR spacer
gacattaattttggtggtattttcaggg	Protospacer
..*.  *********** ********* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1118410 : 1132289 16 Dinoroseobacter_phage(30.0%) head,portal,tail,protease,capsid NA
DBSCAN-SWA_2 1799256 : 1807099 9 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_3 2145595 : 2156241 10 uncultured_Mediterranean_phage(77.78%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage