CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number
CP028723	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-3, complete sequence	0 crisprs	NA	0	0
CP028722	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence	1 crisprs	NA	2	2
CP028720	Enterococcus faecalis strain CVM N48037F chromosome, complete genome	0 crisprs	NA	0	0
CP028721	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-1, complete sequence	0 crisprs	NA	0	0

Cas Category Instructions

Results visualization

1. CP028722

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CRISPR-Cas detection and classification

Crispr_ID: CP028722_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028722_1

38708-38876

Orphan

Consensus_repeat	Method
ACCAACTAAACCAACAGAACCTGAAAAACCAGT	PILER-CR

2 spacers

The CRISPR arrays of CP028722_1

>merge|CP028722|1|38708-38876|PILER-CR
AACCGACAACACCAACAGAACCTACAACTCCTACAGAGCCAAGTGAACCAGAACAACCAACGGAGCCAAGTAAACCAGTAGAACCTGAAAAACCAGTTACACCAAGCAAACCAGCAGAACCCGAAAAACCTGTGACACCAACTAAACCAACAGAACCTGAAAAACCAGT

>CP028722|1|1|38708-38876|PILER-CR
AACCGACAACACCAACAGAACCTACAACTCCTAC	AGAGCCAAGTGAACCAGAACAACCAACGGAGCCAAGTAAACC
AGTAGAACCTGAAAAACCAGTTACACCAAGCAAA	CCAGCAGAACCCGAAAAACCTGTGACACCAACTAAACCA
ACAGAACCTGAAAAACCAGT

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	CP028721.1	9193-9234	0	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	CP028721.1	9122-9160	0	1.0

1. spacer 1.1|38742|42|CP028722|PILER-CR matches to position: 9193-9234, mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

2. spacer 1.2|38818|39|CP028722|PILER-CR matches to position: 9122-9160, mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP015885	Enterococcus faecalis strain sorialis plasmid Efsorialis-p2, complete sequence	16146-16187	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NC_014726	Enterococcus faecalis plasmid pTW9, complete sequence	22840-22881	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP031029	Enterococcus faecalis strain TY1 isolate flatfish plasmid pDEF-2, complete sequence	38618-38659	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP028838	Enterococcus faecalis strain FC plasmid unnamed3, complete sequence	13636-13677	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP028722	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence	38731-38772	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_AP018539	Enterococcus faecalis strain KUB3006 plasmid pKUB3006-1, complete sequence	21807-21848	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_MK993385	Enterococcus faecalis strain P010748 plasmid pEF10748, complete sequence	21806-21847	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NC_004669	Enterococcus faecalis V583 plasmid pTEF1, complete sequence	32712-32753	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	CP002494	Enterococcus faecalis 62 plasmid EF62pC, complete sequence	46754-46795	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP019513	Enterococcus faecalis strain CLB21560 plasmid pA, complete sequence	4929-4970	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP036248	Enterococcus faecalis R712 plasmid pR712_02, complete sequence	76508-76549	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP028721	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-1, complete sequence	9193-9234	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP028286	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence	46839-46880	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_CP042217	Enterococcus faecalis strain L8 plasmid pL8, complete sequence	66833-66874	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NC_002630	Enterococcus faecalis plasmid pAM373, complete sequence	29083-29124	1.0
CP028722_1	1.1\|38742\|42\|CP028722\|PILER-CR	38742-38783	42	NZ_MK140641	Enterococcus faecalis strain E035 plasmid pE035, complete sequence	78155-78196	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NC_004669	Enterococcus faecalis V583 plasmid pTEF1, complete sequence	32641-32679	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP015885	Enterococcus faecalis strain sorialis plasmid Efsorialis-p2, complete sequence	16220-16258	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	CP002494	Enterococcus faecalis 62 plasmid EF62pC, complete sequence	46683-46721	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NC_014726	Enterococcus faecalis plasmid pTW9, complete sequence	22914-22952	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP031029	Enterococcus faecalis strain TY1 isolate flatfish plasmid pDEF-2, complete sequence	38692-38730	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP019513	Enterococcus faecalis strain CLB21560 plasmid pA, complete sequence	4858-4896	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP028838	Enterococcus faecalis strain FC plasmid unnamed3, complete sequence	13710-13748	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP028721	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-1, complete sequence	9122-9160	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP028722	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence	38805-38843	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP028286	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence	46768-46806	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_CP042217	Enterococcus faecalis strain L8 plasmid pL8, complete sequence	66762-66800	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_AP018539	Enterococcus faecalis strain KUB3006 plasmid pKUB3006-1, complete sequence	21881-21919	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NC_002630	Enterococcus faecalis plasmid pAM373, complete sequence	29012-29050	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_MK140641	Enterococcus faecalis strain E035 plasmid pE035, complete sequence	78084-78122	1.0
CP028722_1	1.2\|38818\|39\|CP028722\|PILER-CR	38818-38856	39	NZ_MK993385	Enterococcus faecalis strain P010748 plasmid pEF10748, complete sequence	21880-21918	1.0

1. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP015885 (Enterococcus faecalis strain sorialis plasmid Efsorialis-p2, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

2. spacer 1.1|38742|42|CP028722|PILER-CR matches to NC_014726 (Enterococcus faecalis plasmid pTW9, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

3. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP031029 (Enterococcus faecalis strain TY1 isolate flatfish plasmid pDEF-2, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

4. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP028838 (Enterococcus faecalis strain FC plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

5. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP028722 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

6. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_AP018539 (Enterococcus faecalis strain KUB3006 plasmid pKUB3006-1, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

7. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_MK993385 (Enterococcus faecalis strain P010748 plasmid pEF10748, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

8. spacer 1.1|38742|42|CP028722|PILER-CR matches to NC_004669 (Enterococcus faecalis V583 plasmid pTEF1, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

9. spacer 1.1|38742|42|CP028722|PILER-CR matches to CP002494 (Enterococcus faecalis 62 plasmid EF62pC, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

10. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP019513 (Enterococcus faecalis strain CLB21560 plasmid pA, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

11. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP036248 (Enterococcus faecalis R712 plasmid pR712_02, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

12. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP028721 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-1, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

13. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP028286 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

14. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_CP042217 (Enterococcus faecalis strain L8 plasmid pL8, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

15. spacer 1.1|38742|42|CP028722|PILER-CR matches to NC_002630 (Enterococcus faecalis plasmid pAM373, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

16. spacer 1.1|38742|42|CP028722|PILER-CR matches to NZ_MK140641 (Enterococcus faecalis strain E035 plasmid pE035, complete sequence) position: , mismatch: 0, identity: 1.0

acaactcctacagagccaagtgaaccagaacaaccaacggag	CRISPR spacer
acaactcctacagagccaagtgaaccagaacaaccaacggag	Protospacer
******************************************

17. spacer 1.2|38818|39|CP028722|PILER-CR matches to NC_004669 (Enterococcus faecalis V583 plasmid pTEF1, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

18. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP015885 (Enterococcus faecalis strain sorialis plasmid Efsorialis-p2, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

19. spacer 1.2|38818|39|CP028722|PILER-CR matches to CP002494 (Enterococcus faecalis 62 plasmid EF62pC, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

20. spacer 1.2|38818|39|CP028722|PILER-CR matches to NC_014726 (Enterococcus faecalis plasmid pTW9, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

21. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP031029 (Enterococcus faecalis strain TY1 isolate flatfish plasmid pDEF-2, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

22. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP019513 (Enterococcus faecalis strain CLB21560 plasmid pA, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

23. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP028838 (Enterococcus faecalis strain FC plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

24. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP028721 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

25. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP028722 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

26. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP028286 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

27. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_CP042217 (Enterococcus faecalis strain L8 plasmid pL8, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

28. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_AP018539 (Enterococcus faecalis strain KUB3006 plasmid pKUB3006-1, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

29. spacer 1.2|38818|39|CP028722|PILER-CR matches to NC_002630 (Enterococcus faecalis plasmid pAM373, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

30. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_MK140641 (Enterococcus faecalis strain E035 plasmid pE035, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

31. spacer 1.2|38818|39|CP028722|PILER-CR matches to NZ_MK993385 (Enterococcus faecalis strain P010748 plasmid pEF10748, complete sequence) position: , mismatch: 0, identity: 1.0

tacaccaagcaaaccagcagaacccgaaaaacctgtgac	CRISPR spacer
tacaccaagcaaaccagcagaacccgaaaaacctgtgac	Protospacer
***************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028721