CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP034778	Klebsiella pneumoniae strain 18CPO060 chromosome, complete genome	0 crisprs	RT,csa3,cas3,DEDDh,DinG,WYL	6
CP034777	Klebsiella pneumoniae strain 18CPO060 plasmid pKPCKP060, complete sequence	0 crisprs	NA	1
CP034776	Klebsiella pneumoniae strain 18CPO060 plasmid phvKP060, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1320479 : 1335201

Morganella_phage(50.0%)

tail,integrase

attL 1320232:1320252|attR 1340296:1340316

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1320232:1320252	attL	NA	NA	NA	NA
QBK42497.1\|1320479_1321733_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	7.2e-147	60.4
QBK42498.1\|1321828_1322836_+	hypothetical protein	NA	NA	NA	NA
QBK42499.1\|1322966_1323185_+	AlpA family phage regulatory protein	NA	NA	NA	NA
QBK42500.1\|1323184_1323619_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.4e-25	55.3
QBK42501.1\|1323632_1324235_+	antirepressor protein	A0A1W6JPH8	Morganella_phage	1.2e-54	57.8
QBK42502.1\|1324234_1324414_+	DUF4222 domain-containing protein	NA	NA	NA	NA
QBK42503.1\|1324410_1325376_+	HAD family hydrolase	A0A291AWU3	Escherichia_phage	3.9e-07	44.3
QBK42504.1\|1325372_1325876_+	hypothetical protein	NA	NA	NA	NA
QBK42505.1\|1325872_1326082_+	hypothetical protein	NA	NA	NA	NA
QBK42506.1\|1326078_1326705_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.6e-25	37.8
QBK42507.1\|1326714_1327065_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	3.4e-38	70.0
QBK42508.1\|1327057_1329820_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.8e-292	56.1
QBK46081.1\|1330159_1330606_+	single-stranded DNA-binding protein	NA	NA	NA	NA
QBK46082.1\|1330619_1330970_+	PerC family transcriptional regulator	NA	NA	NA	NA
QBK42509.1\|1330974_1331448_+	hypothetical protein	NA	NA	NA	NA
QBK42510.1\|1331801_1332128_+	hypothetical protein	NA	NA	NA	NA
QBK42511.1\|1332135_1335201_+\|tail	tail protein (tape measure)	B1GS57	Salmonella_phage	2.0e-94	40.5
1340296:1340316	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1677103 : 1684008

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK46095.1\|1677103_1677967_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
QBK42812.1\|1677977_1678751_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
QBK46096.1\|1678991_1679885_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
QBK42813.1\|1680130_1681492_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
QBK42814.1\|1681810_1682533_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
QBK42815.1\|1682529_1684008_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.4e-29	28.3

DBSCAN-SWA_3

1888298 : 1955072

Klebsiella_phage(52.08%)

tail,head,integrase,tRNA,terminase,capsid,protease,holin,portal

attL 1888151:1888210|attR 1926172:1926296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1888151:1888210	attL	NA	NA	NA	NA
QBK42970.1\|1888298_1889333_-\|integrase	integrase	K7PLZ2	Enterobacterial_phage	7.0e-124	64.0
QBK42971.1\|1889332_1889563_-	DUF4224 domain-containing protein	NA	NA	NA	NA
QBK42972.1\|1889595_1889868_-	hypothetical protein	K7PKM4	Enterobacterial_phage	5.0e-13	44.8
QBK42973.1\|1889864_1890140_-	hypothetical protein	NA	NA	NA	NA
QBK42974.1\|1890136_1890619_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.4e-71	81.3
QBK42975.1\|1890620_1890956_-	hypothetical protein	NA	NA	NA	NA
QBK42976.1\|1891083_1891869_-	hypothetical protein	C7BGF1	Burkholderia_phage	4.0e-63	52.5
QBK42977.1\|1891868_1892168_-	hypothetical protein	K7PJS4	Enterobacterial_phage	9.4e-13	46.7
QBK42978.1\|1892786_1893443_-	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	2.0e-108	87.2
QBK42979.1\|1893541_1893739_+	hypothetical protein	K7PHB1	Enterobacterial_phage	1.1e-25	86.2
QBK42980.1\|1893884_1894208_-	hypothetical protein	NA	NA	NA	NA
QBK42981.1\|1894266_1894734_+	hypothetical protein	K7PJS5	Enterobacterial_phage	7.4e-65	85.8
QBK42982.1\|1894971_1895151_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
QBK42983.1\|1895140_1896094_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.5e-85	67.4
QBK42984.1\|1896908_1897286_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	6.7e-48	72.8
QBK42985.1\|1897298_1898279_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.9e-135	67.2
QBK42986.1\|1898292_1898871_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-49	56.1
QBK42987.1\|1898953_1899433_-	hypothetical protein	F1C594	Cronobacter_phage	2.9e-40	55.6
QBK42988.1\|1899687_1900035_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.5e-38	71.0
QBK42989.1\|1900037_1900577_+	hypothetical protein	A0A286N2Q6	Klebsiella_phage	1.1e-101	98.9
QBK42990.1\|1900573_1900921_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	3.0e-39	80.0
QBK42991.1\|1900917_1901193_+	hypothetical protein	A0A286N2Q8	Klebsiella_phage	1.7e-05	85.7
QBK46111.1\|1901143_1901338_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.6e-21	82.5
QBK42992.1\|1901518_1902142_-	hypothetical protein	NA	NA	NA	NA
QBK42993.1\|1902319_1902565_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-34	98.8
QBK42994.1\|1902631_1902853_+	hypothetical protein	NA	NA	NA	NA
QBK42995.1\|1902908_1903199_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	2.9e-51	94.8
QBK42996.1\|1903211_1903421_+	serine acetyltransferase	A0A286N2R4	Klebsiella_phage	2.4e-23	84.1
QBK42997.1\|1903542_1903977_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	6.2e-74	100.0
QBK42998.1\|1903986_1905519_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	1.1e-295	99.8
QBK42999.1\|1905521_1906799_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	6.2e-247	100.0
QBK43000.1\|1906804_1907485_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	1.6e-124	100.0
QBK43001.1\|1907496_1908660_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	1.0e-211	99.7
QBK43002.1\|1908696_1908939_+	hypothetical protein	NA	NA	NA	NA
QBK43003.1\|1908886_1909213_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
QBK43004.1\|1909273_1909471_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
QBK43005.1\|1909472_1909805_+\|head,tail	head-tail adaptor protein	A0A286S2A2	Klebsiella_phage	2.0e-56	99.1
QBK43006.1\|1909797_1910337_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	1.0e-94	100.0
QBK43007.1\|1910333_1910699_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	1.9e-60	91.7
QBK43008.1\|1910755_1911247_+\|tail	phage tail protein	A0A286S1Q8	Klebsiella_phage	2.5e-87	99.4
QBK43009.1\|1911290_1911644_+\|tail	phage tail protein	A0A286S1N4	Klebsiella_phage	3.8e-61	99.1
QBK46112.1\|1911676_1911940_+\|tail	phage tail protein	A0A286S1P2	Klebsiella_phage	5.9e-43	98.8
QBK43010.1\|1912005_1912473_+	hypothetical protein	NA	NA	NA	NA
QBK43011.1\|1912517_1914965_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	1.2e-275	66.1
QBK43012.1\|1914964_1915444_+	hypothetical protein	A0A286S298	Klebsiella_phage	8.1e-91	95.6
QBK43013.1\|1915430_1915913_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-85	98.8
QBK43014.1\|1915922_1916303_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.4e-69	96.0
QBK43015.1\|1916299_1919368_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.1
QBK43016.1\|1919442_1921596_+	hypothetical protein	B5TAB2	Burkholderia_phage	3.6e-90	42.2
QBK43017.1\|1921608_1922343_+	hypothetical protein	NA	NA	NA	NA
QBK43018.1\|1922354_1922684_-	hypothetical protein	NA	NA	NA	NA
QBK43019.1\|1922720_1923050_-	hypothetical protein	NA	NA	NA	NA
QBK43020.1\|1923404_1923644_+	DNA polymerase V	I6PD82	Cronobacter_phage	1.5e-21	55.7
QBK43021.1\|1923600_1923969_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.3e-24	49.1
QBK43022.1\|1924141_1925893_-	hypothetical protein	NA	NA	NA	NA
QBK43023.1\|1926455_1927337_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
1926172:1926296	attR	NA	NA	NA	NA
QBK43024.1\|1927435_1928104_+	YecA family protein	NA	NA	NA	NA
QBK43025.1\|1928128_1929340_-	tyrosine transporter TyrP	NA	NA	NA	NA
QBK46113.1\|1929531_1929771_+	DUF2492 family protein	NA	NA	NA	NA
QBK43026.1\|1929806_1930304_-	non-heme ferritin	NA	NA	NA	NA
QBK46114.1\|1930361_1930541_-	hypothetical protein	NA	NA	NA	NA
QBK43027.1\|1930712_1931351_+	hypothetical protein	NA	NA	NA	NA
QBK43028.1\|1931400_1932822_-	MFS transporter	NA	NA	NA	NA
QBK43029.1\|1932972_1933224_+	DUF2766 domain-containing protein	NA	NA	NA	NA
QBK43030.1\|1933261_1934824_-	MFS transporter	NA	NA	NA	NA
QBK43031.1\|1934838_1934997_+	succinate dehydrogenase	NA	NA	NA	NA
QBK43032.1\|1935067_1935577_-	non-heme ferritin-like protein	NA	NA	NA	NA
QBK43033.1\|1935670_1935874_+	hypothetical protein	NA	NA	NA	NA
QBK43034.1\|1936468_1937449_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
QBK43035.1\|1937511_1939026_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A2R8FG22	Brazilian_cedratvirus	6.9e-11	30.0
QBK46115.1\|1939040_1940021_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
QBK43036.1\|1940182_1940971_+	trehalose-phosphatase	NA	NA	NA	NA
QBK43037.1\|1940945_1942370_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
QBK43038.1\|1942393_1942822_-	universal stress protein UspC	NA	NA	NA	NA
QBK43039.1\|1943174_1944758_+	MFS transporter	NA	NA	NA	NA
QBK43040.1\|1944762_1945902_+	glycoside hydrolase family 105 protein	NA	NA	NA	NA
QBK43041.1\|1945963_1947697_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.4e-87	33.8
QBK43042.1\|1947932_1948502_+	VOC family protein	NA	NA	NA	NA
QBK43043.1\|1948578_1949322_+	copper homeostasis protein CutC	NA	NA	NA	NA
QBK43044.1\|1949403_1950408_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
QBK43045.1\|1950404_1951148_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	1.4e-25	30.4
QBK43046.1\|1951187_1951583_-	hypothetical protein	NA	NA	NA	NA
QBK43047.1\|1951635_1952454_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
QBK43048.1\|1952450_1953017_-	hydrolase	NA	NA	NA	NA
QBK43049.1\|1953284_1955072_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2

DBSCAN-SWA_4

2755909 : 2766796

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK43789.1\|2755909_2759017_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
QBK43790.1\|2759071_2760337_+	MFS transporter	NA	NA	NA	NA
QBK43791.1\|2760367_2761456_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	1.0e-210	99.7
QBK43792.1\|2761542_2761803_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
QBK43793.1\|2762100_2762961_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
QBK43794.1\|2762981_2763743_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.5e-134	99.6
QBK43795.1\|2764003_2764906_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
QBK43796.1\|2764917_2766183_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
QBK43797.1\|2766175_2766796_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

2802079 : 2883091

Salmonella_phage(18.6%)

tail,head,lysis,integrase,transposase,terminase,capsid,protease,portal

attL 2806701:2806717|attR 2881890:2881906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK46167.1\|2802079_2802817_+\|protease	serine protease	NA	NA	NA	NA
QBK43830.1\|2802830_2802947_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QBK43831.1\|2802990_2803320_-	multidrug efflux SMR transporter subunit KpnF	NA	NA	NA	NA
QBK43832.1\|2803306_2803669_-	multidrug efflux SMR transporter subunit KpnE	NA	NA	NA	NA
QBK43833.1\|2804111_2805146_+	AI-2E family transporter	NA	NA	NA	NA
QBK43834.1\|2805370_2807026_+	malonate decarboxylase subunit alpha	NA	NA	NA	NA
2806701:2806717	attL	NA	NA	NA	NA
QBK43835.1\|2807025_2807868_+	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase	NA	NA	NA	NA
QBK43836.1\|2807885_2808185_+	malonate decarboxylase acyl carrier protein	NA	NA	NA	NA
QBK43837.1\|2808177_2809011_+	biotin-independent malonate decarboxylase subunit beta	NA	NA	NA	NA
QBK43838.1\|2809010_2809811_+	biotin-independent malonate decarboxylase subunit gamma	NA	NA	NA	NA
QBK43839.1\|2809947_2810907_+	AEC family transporter	A0A0U2C0Y4	Salmonella_phage	2.7e-53	90.3
QBK43840.1\|2810910_2811528_+	malonate decarboxylase holo-ACP synthase	NA	NA	NA	NA
QBK43841.1\|2811527_2812430_+	malonate decarboxylase subunit epsilon	NA	NA	NA	NA
QBK43842.1\|2812419_2813346_-	LysR family transcriptional regulator	NA	NA	NA	NA
QBK43843.1\|2813503_2815159_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
QBK43844.1\|2815423_2816344_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
QBK43845.1\|2816507_2816864_-	hypothetical protein	NA	NA	NA	NA
QBK43846.1\|2817019_2818636_+	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
QBK43847.1\|2818632_2819352_+	two-component system response regulator DcuR	NA	NA	NA	NA
QBK43848.1\|2819332_2820283_-	FAD:protein FMN transferase	NA	NA	NA	NA
QBK43849.1\|2820350_2823128_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	6.8e-65	31.0
QBK43850.1\|2823214_2823346_-	transcriptional regulator	NA	NA	NA	NA
QBK43851.1\|2823770_2825282_+	anion permease	NA	NA	NA	NA
QBK43852.1\|2825336_2826989_+	class I fumarate hydratase	NA	NA	NA	NA
QBK43853.1\|2827151_2828768_+	mechanosensitive ion channel	NA	NA	NA	NA
QBK43854.1\|2829375_2829765_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
QBK43855.1\|2829757_2830522_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
QBK43856.1\|2830511_2831864_-	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA
QBK46168.1\|2831873_2833076_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
QBK43857.1\|2833086_2833743_-	CoA transferase subunit B	NA	NA	NA	NA
QBK43858.1\|2833753_2834440_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
QBK43859.1\|2834609_2835416_+	IclR family transcriptional regulator	NA	NA	NA	NA
QBK43860.1\|2835412_2835976_-	DNA endonuclease SmrA	NA	NA	NA	NA
QBK43861.1\|2836077_2836986_-	LysR family transcriptional regulator	NA	NA	NA	NA
QBK43862.1\|2837152_2838463_+	amidohydrolase	NA	NA	NA	NA
QBK43863.1\|2838462_2839908_+	amidohydrolase	NA	NA	NA	NA
QBK43864.1\|2840027_2841146_+	aminobenzoyl-glutamate transporter	NA	NA	NA	NA
QBK43865.1\|2841274_2842375_+\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	8.3e-115	56.8
QBK43866.1\|2843575_2843875_-	hypothetical protein	NA	NA	NA	NA
QBK43867.1\|2844042_2844687_+	hypothetical protein	NA	NA	NA	NA
QBK43868.1\|2844742_2845477_-	hypothetical protein	NA	NA	NA	NA
QBK43869.1\|2845489_2847643_-	hypothetical protein	B5TAB2	Burkholderia_phage	6.2e-90	42.2
QBK43870.1\|2847715_2850793_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	61.8
QBK43871.1\|2850789_2851170_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	7.9e-57	79.4
QBK43872.1\|2851182_2851659_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	5.3e-50	64.6
QBK43873.1\|2851645_2852119_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.2e-54	61.4
QBK43874.1\|2852140_2855719_-\|tail	phage tail tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	1.2e-242	59.1
QBK43875.1\|2855781_2856303_-	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	1.7e-09	45.2
QBK43876.1\|2856377_2856683_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
QBK43877.1\|2856685_2857090_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	3.6e-31	54.6
QBK43878.1\|2857120_2857825_-\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	1.6e-79	66.5
QBK43879.1\|2857881_2858229_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
QBK43880.1\|2858225_2858675_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
QBK43881.1\|2858662_2859010_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.5e-41	74.1
QBK43882.1\|2859268_2860192_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.8e-172	97.1
QBK43883.1\|2860401_2860605_-	hypothetical protein	M1FN89	Enterobacteria_phage	2.3e-07	42.4
QBK43884.1\|2860643_2861852_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	9.9e-194	84.5
QBK46169.1\|2861866_2862520_-\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	1.0e-104	86.9
QBK43885.1\|2862506_2863736_-\|portal	phage portal protein	U5P411	Shigella_phage	5.0e-201	81.2
QBK43886.1\|2863735_2863921_-	hypothetical protein	A0A1B5FP99	Escherichia_phage	5.2e-14	63.9
QBK43887.1\|2863930_2865661_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	2.3e-300	83.0
QBK43888.1\|2865657_2866152_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.2e-81	92.0
QBK43889.1\|2866282_2866633_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	7.1e-52	80.2
QBK43890.1\|2866620_2866854_-	hypothetical protein	NA	NA	NA	NA
QBK43891.1\|2867264_2867615_-	hypothetical protein	H2EQH5	Salmonella_phage	2.1e-11	39.7
QBK43892.1\|2867611_2868151_-	lysozyme	K7PM52	Enterobacteria_phage	1.0e-81	79.0
QBK43893.1\|2868153_2868402_-\|lysis	lysis protein	NA	NA	NA	NA
QBK43894.1\|2868652_2869738_+	hypothetical protein	NA	NA	NA	NA
QBK43895.1\|2869737_2870730_+	hypothetical protein	NA	NA	NA	NA
QBK43896.1\|2870769_2871117_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	4.0e-55	85.0
QBK43897.1\|2871135_2872116_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.9e-134	66.9
QBK43898.1\|2872128_2872506_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
QBK43899.1\|2872515_2873325_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.6e-110	69.7
QBK43900.1\|2873321_2874290_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.6e-85	66.4
QBK43901.1\|2874327_2874459_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.4e-13	76.7
QBK43902.1\|2874696_2875149_-	hypothetical protein	K7PJS5	Enterobacterial_phage	2.6e-67	87.8
QBK43903.1\|2875177_2875441_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	3.7e-13	47.9
QBK43904.1\|2875542_2876019_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	2.0e-12	45.3
QBK43905.1\|2876190_2877345_+	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	1.5e-34	28.2
QBK43906.1\|2877728_2878652_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	4.5e-106	63.8
QBK43907.1\|2878739_2879039_+	hypothetical protein	K7PJS4	Enterobacterial_phage	9.4e-13	46.7
QBK43908.1\|2879038_2879824_+	hypothetical protein	C7BGF1	Burkholderia_phage	5.3e-63	52.9
QBK43909.1\|2879951_2880296_+	hypothetical protein	NA	NA	NA	NA
QBK43910.1\|2880288_2880951_+	morphogenetic protein	Q71T76	Escherichia_phage	2.2e-54	56.0
QBK43911.1\|2880947_2881133_+	hypothetical protein	NA	NA	NA	NA
QBK43912.1\|2881252_2881513_+	pyocin activator protein PrtN	A0A1L5C290	Pseudoalteromonas_phage	1.5e-11	43.7
QBK43913.1\|2882124_2882283_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
2881890:2881906	attR	NA	NA	NA	NA
QBK43914.1\|2882575_2883091_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.0e-23	54.9

DBSCAN-SWA_6

3472525 : 3481989

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK44427.1\|3472525_3474247_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
QBK44428.1\|3474291_3474993_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QBK44429.1\|3475346_3475565_+	translation initiation factor IF-1	NA	NA	NA	NA
QBK44430.1\|3475685_3477965_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
QBK44431.1\|3477995_3478313_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
QBK44432.1\|3478638_3478860_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
QBK44433.1\|3478936_3480877_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.2e-36	40.1
QBK44434.1\|3480873_3481989_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP034777

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5222 : 43421

Escherichia_phage(29.41%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK41192.1\|5222_6938_-\|integrase	integrase	NA	NA	NA	NA
QBK41193.1\|7047_10077_+\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
QBK41194.1\|10183_11209_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
QBK41195.1\|11205_11985_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
QBK41196.1\|11981_12221_+	hypothetical protein	NA	NA	NA	NA
QBK41197.1\|12272_13154_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
QBK41198.1\|13403_14723_-\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
QBK41199.1\|14999_16184_-\|transposase	ISAs1-like element ISKpn31 family transposase	NA	NA	NA	NA
QBK41200.1\|16687_17047_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
QBK41201.1\|19087_19798_-	AAA family ATPase	NA	NA	NA	NA
QBK41202.1\|19871_20288_-	PIN domain-containing protein	NA	NA	NA	NA
QBK41300.1\|20284_20515_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
QBK41203.1\|20498_20933_+	hypothetical protein	NA	NA	NA	NA
QBK41204.1\|20856_21051_-	hypothetical protein	NA	NA	NA	NA
QBK41205.1\|21102_21321_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
QBK41206.1\|21322_21628_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
QBK41301.1\|21832_22192_+	hypothetical protein	NA	NA	NA	NA
QBK41207.1\|22218_22542_+	hypothetical protein	NA	NA	NA	NA
QBK41208.1\|22538_23555_+	hypothetical protein	NA	NA	NA	NA
QBK41209.1\|23889_25158_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.1e-59	34.4
QBK41210.1\|25162_28420_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
QBK41211.1\|28420_29695_-	restriction endonuclease subunit S	NA	NA	NA	NA
QBK41212.1\|29691_31719_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
QBK41213.1\|31872_32667_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
QBK41302.1\|33090_33270_-	Par-like protein	NA	NA	NA	NA
QBK41303.1\|33389_34016_-	cobyrinic acid ac-diamide synthase	A0A222YXS3	Escherichia_phage	2.9e-40	43.6
QBK41214.1\|34603_34984_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
QBK41215.1\|34980_35328_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
QBK41216.1\|35377_36916_+\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.0e-299	99.8
QBK41217.1\|37122_37998_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	5.6e-82	56.4
QBK41218.1\|38409_39681_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.1e-153	64.0
QBK41219.1\|39680_40112_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
QBK41220.1\|40344_41316_+	StbA family protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
QBK41221.1\|41318_41990_+	Mediator of plasmid stability	NA	NA	NA	NA
QBK41222.1\|42052_42283_+	hypothetical protein	NA	NA	NA	NA
QBK41223.1\|42719_43421_+	DNA methylase	A0A2I7RE86	Vibrio_phage	9.3e-27	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP034776

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5108 : 67686

Enterobacteria_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBK40998.1\|5108_6032_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.8e-172	97.1
QBK40999.1\|6709_7027_-	hypothetical protein	NA	NA	NA	NA
QBK41000.1\|7178_7502_-	hypothetical protein	NA	NA	NA	NA
QBK41001.1\|8253_9213_-	DNA replication protein	NA	NA	NA	NA
QBK41002.1\|9255_9663_-	hypothetical protein	NA	NA	NA	NA
QBK41003.1\|9672_10116_-	hypothetical protein	NA	NA	NA	NA
QBK41004.1\|11379_12348_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
QBK41005.1\|12616_14209_-\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.6e-175	61.6
QBK41006.1\|14239_14590_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
QBK41007.1\|14586_15027_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
QBK41008.1\|15223_15406_+	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	9.1e-11	57.1
QBK41009.1\|16654_17626_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	6.6e-156	89.7
QBK41010.1\|17625_18792_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	2.0e-223	97.4
QBK41011.1\|18747_18996_+	hypothetical protein	NA	NA	NA	NA
QBK41012.1\|19210_19492_-	hypothetical protein	NA	NA	NA	NA
QBK41013.1\|19521_20532_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.1e-86	53.5
QBK41014.1\|22851_23388_-	plasmid transfer protein	NA	NA	NA	NA
QBK41015.1\|26138_26921_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.0e-135	96.1
QBK41178.1\|29267_29705_-	hypothetical protein	NA	NA	NA	NA
QBK41016.1\|29704_30736_-	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.9e-08	26.1
QBK41017.1\|30735_31602_-	ParA family protein	NA	NA	NA	NA
QBK41018.1\|32579_34271_+	hypothetical protein	NA	NA	NA	NA
QBK41019.1\|34333_35257_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.1e-165	92.5
QBK41020.1\|35347_35638_-	hypothetical protein	NA	NA	NA	NA
QBK41021.1\|35989_36196_+	hypothetical protein	NA	NA	NA	NA
QBK41022.1\|36185_36479_-	korC	NA	NA	NA	NA
QBK41023.1\|36494_37628_-	hypothetical protein	NA	NA	NA	NA
QBK41024.1\|38235_38466_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
QBK41025.1\|38462_38906_+	PIN domain-containing protein	NA	NA	NA	NA
QBK41026.1\|41192_41468_-	GAF domain-containing protein	NA	NA	NA	NA
QBK41027.1\|41395_41599_-	hypothetical protein	NA	NA	NA	NA
QBK41028.1\|41689_42610_-	DUF1471 domain-containing protein	NA	NA	NA	NA
QBK41029.1\|42658_43150_-	hypothetical protein	NA	NA	NA	NA
QBK41030.1\|43212_43488_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
QBK41031.1\|43571_44000_-	DUF417 family protein	NA	NA	NA	NA
QBK41032.1\|44037_44598_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QBK41033.1\|44639_44900_-	DUF1471 domain-containing protein	A0A1B2IE60	Erwinia_phage	1.1e-06	51.0
QBK41034.1\|45566_47768_-	TonB-dependent receptor	NA	NA	NA	NA
QBK41035.1\|47849_49127_-	lysine 6-monooxygenase	NA	NA	NA	NA
QBK41036.1\|49130_50864_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
QBK41037.1\|50863_51811_-	N-acetyltransferase	NA	NA	NA	NA
QBK41038.1\|51811_53536_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA
QBK41039.1\|53668_54892_+	MFS transporter	NA	NA	NA	NA
QBK41040.1\|55241_55448_+	hypothetical protein	NA	NA	NA	NA
QBK41041.1\|55589_55784_+	hypothetical protein	NA	NA	NA	NA
QBK41042.1\|56644_57154_+	peptide deformylase	E3SLL2	Synechococcus_phage	8.8e-19	41.9
QBK41043.1\|57703_58021_-	c-type lysozyme inhibitor	NA	NA	NA	NA
QBK41044.1\|58017_58257_-	hypothetical protein	NA	NA	NA	NA
QBK41045.1\|58257_58644_-	transcriptional repressor	NA	NA	NA	NA
QBK41046.1\|58741_59941_+	cobalamin biosynthesis protein CobW	NA	NA	NA	NA
QBK41047.1\|60323_61031_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
QBK41048.1\|61693_62692_-	iron ABC transporter permease	NA	NA	NA	NA
QBK41049.1\|62697_63654_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
QBK41050.1\|63675_64503_-	ABC transporter ATP-binding protein	M1HV27	Acanthocystis_turfacea_Chlorella_virus	2.2e-11	28.4
QBK41051.1\|65247_66171_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.1e-165	92.5
QBK41052.1\|66285_66444_-	hypothetical protein	A0A0U2RK18	Escherichia_phage	2.2e-05	69.7
QBK41053.1\|66756_67686_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.6e-72	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034778

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP034777

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP034776

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection