CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT962480	Pseudomonas syringae pv. syringae isolate CFBP4215 genome assembly, chromosome: 1	4 crisprs	DEDDh,PD-DExK,RT,csa3,cas3,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LT962480_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962480_1

643597-643690

Orphan

Consensus_repeat	Method
TGGTGATCTTGCGGGCACCTATCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LT962480_1

>merge|LT962480|1|643597-643690|CRISPRCasFinder
TGGTGATCTTGCGGGCACCTATCGCTCCTCACGCCCCGGTGCGGCATGCCCGCGCTGGGGCCGGGCCAGGTGGTGATCTTGCGGACACCTATCG

>LT962480|1|1|643597-643690|CRISPRCasFinder
TGGTGATCTTGCGGGCACCTATCG	CTCCTCACGCCCCGGTGCGGCATGCCCGCGCTGGGGCCGGGCCAGG
TGGTGATCTTGCGGACACCTATCG

Protein	Signature genes	Signature genes Name	Protein_function
LT962480.1\|SOP95500.1\|635314_636121_+\|3',5'-cyclic-adenosine-monophosphate-phosphodiesterase-CpdA	unknown	unknown	gnl\|CDD\|182997
LT962480.1\|SOP95496.1\|634457_634865_+\|Hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOP95506.1\|638804_639782_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379191
LT962480.1\|SOP95504.1\|636903_638808_+\|DNA-topoisomerase-4-subunit-B	unknown	unknown	gnl\|CDD\|235501
LT962480.1\|SOP95512.1\|642749_643445_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377153
LT962480.1\|SOP95514.1\|643849_645391_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226249
LT962480.1\|SOP95498.1\|634861_635227_+\|Hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOP95527.1\|654419_655451_-\|putative-ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
LT962480.1\|SOP95502.1\|636209_636827_+\|esterase	unknown	unknown	gnl\|CDD\|225692
LT962480.1\|SOP95494.1\|633808_634261_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225693
LT962480.1\|SOP95524.1\|652453_653305_+\|Motility-protein-A	unknown	unknown	gnl\|CDD\|181655
LT962480.1\|SOP95522.1\|650710_652246_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370050
LT962480.1\|SOP95520.1\|648841_650665_-\|Phosphatidylserine-decarboxylase-proenzyme	unknown	unknown	gnl\|CDD\|104071
LT962480.1\|SOP95508.1\|639778_640300_+\|aspartyl-protease	unknown	unknown	gnl\|CDD\|226106
LT962480.1\|SOP95516.1\|645479_646736_+\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|319803
LT962480.1\|SOP95510.1\|640310_642566_+\|DNA-topoisomerase-4-subunit-A	unknown	unknown	gnl\|CDD\|235503
LT962480.1\|SOP95518.1\|646801_648586_-\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOP95529.1\|655559_656096_+\|Oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
LT962480.1\|SOP95531.1\|656192_656804_+\|UPF0126-inner-membrane-protein	unknown	unknown	gnl\|CDD\|225415
LT962480.1\|SOP95525.1\|653308_654358_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365

Protein	Function_ID	Function_description	E-value
LT962480.1\|SOP95500.1\|635314_636121_+\|3',5'-cyclic-adenosine-monophosphate-phosphodiesterase-CpdA	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	8.94366e-97
LT962480.1\|SOP95525.1\|653308_654358_+\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	3.56412e-175
LT962480.1\|SOP95506.1\|638804_639782_+\|hypothetical-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	7.69114e-09
LT962480.1\|SOP95504.1\|636903_638808_+\|DNA-topoisomerase-4-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
LT962480.1\|SOP95512.1\|642749_643445_+\|hypothetical-protein	gnl\|CDD\|377153	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component. ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.	9.71642e-34
LT962480.1\|SOP95514.1\|643849_645391_-\|histidine-kinase	gnl\|CDD\|226249	COG3726, AhpA, Uncharacterized membrane protein affecting hemolysin expression [General function prediction only].	3.92741e-45
LT962480.1\|SOP95520.1\|648841_650665_-\|Phosphatidylserine-decarboxylase-proenzyme	gnl\|CDD\|104071	PRK09629, PRK09629, bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional.	0
LT962480.1\|SOP95527.1\|654419_655451_-\|putative-ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
LT962480.1\|SOP95502.1\|636209_636827_+\|esterase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	7.18069e-72
LT962480.1\|SOP95494.1\|633808_634261_+\|hypothetical-protein	gnl\|CDD\|225693	COG3151, COG3151, Uncharacterized protein conserved in bacteria [Function unknown].	7.7479e-56
LT962480.1\|SOP95524.1\|652453_653305_+\|Motility-protein-A	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	4.89332e-157
LT962480.1\|SOP95522.1\|650710_652246_-\|hypothetical-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	3.24715e-08
LT962480.1\|SOP95508.1\|639778_640300_+\|aspartyl-protease	gnl\|CDD\|226106	COG3577, COG3577, Predicted aspartyl protease [General function prediction only].	5.2359e-50
LT962480.1\|SOP95516.1\|645479_646736_+\|phosphoserine-phosphatase	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.2761e-103
LT962480.1\|SOP95510.1\|640310_642566_+\|DNA-topoisomerase-4-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
LT962480.1\|SOP95529.1\|655559_656096_+\|Oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	2.47667e-133
LT962480.1\|SOP95531.1\|656192_656804_+\|UPF0126-inner-membrane-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	2.42618e-82

>LT962480.1|SOP95512.1|642749_643445_+|hypothetical-protein
MNFLRLPLILLMTGVLGLAGCSVRQPTALYQLDSGEPGQPKQSSGLAVLLGPVSVADYLQRETLLQRQPDGTLTASSDGRWAGNLSSDIDQLLLRQLAWKLDSQRVVMAPATASFTPDVQVVLSITRLDSGAKQPAVLDAQWRLLDRKGHVRDSRLVHLEQVHAGSSADQVKAQGMLLQRLADQVSTAIKPISWQALDEPKKTPVAKAKEPDKPRIPLASPIRTDLEVFRF
>LT962480.1|SOP95510.1|640310_642566_+|DNA-topoisomerase-4-subunit-A
MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMRAVYRIEDGDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALLVENS
>LT962480.1|SOP95508.1|639778_640300_+|aspartyl-protease
MSDVQPGKRAGKVLMIMAWAAGLFLATRFFGDWEDRQQNPNAVVTSQHGDGYIEVQLAGNRQGHFVTTGQINGRTVEFMIDTGATDVAVPGDMADRLGLKRGFPVTVSTANGNSQGFRTTLDRLQLGDIVLTNVRALVAPGLDGEQVLLGMSAMKQLEFTQRGGNLLLRQSTK
>LT962480.1|SOP95506.1|638804_639782_+|hypothetical-protein
MIRAWLAALILIAAPVVAAPLEALKLQSEHPVDDMAGGNLSGLAMCNGQLWTVSDRDDDVLYSLDVSQDTWKAQSHHIDAPAPQSYLPLKLRFMAGLSALIRGGSLDFEGVSCDAAGNRYLVSEAYGTVLKVPVSGKPFWLDLPKELVDQARSQGMLQRFNAIFEGIAVSPAGDRLWLAAEREKRGLLVVQRDKEQWTCGQSCVLLSESGLDALPPEQGSKKVSTDFSDVSLYNGKLFTLERAVYRICRRDLETGQVERCWSFAKEAMVPSRRYDQPYGLTEALVVDEKGAWIGIDNNFGVRADGEKRPIVWRFAAPEAGWSAGQ
>LT962480.1|SOP95504.1|636903_638808_+|DNA-topoisomerase-4-subunit-B
MANPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGAADISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVLT
>LT962480.1|SOP95502.1|636209_636827_+|esterase
MTSDTPSLLYIHGLNSSNLSRKACQLSALMKSLGLADRLQVPELHHHPRQAMLQLEAAIAALGRPLLVGSSLGGYYATHLAQRHGLKAVLINPAVNPHQLFDGFLGVQQNLYTGEQWQLTEDHIRALAELEVPAPQDPQQFQVWLQTGDETLDYRRAEKFYRSCALRIQAGGDHSFQGFAEHMPALLTVAGFAPDLLQKIDLSAL
>LT962480.1|SOP95500.1|635314_636121_+|3',5'-cyclic-adenosine-monophosphate-phosphodiesterase-CpdA
MPSAALSSSVLLVQLSDSHLFAEADGALLGMSTRDSLEKVVDRVLAEQPHIDLVVASGDISQDGSVESYQAFRRISGRIDAPARWFAGNHDELPQMEQVAQHNGLLDPVVDIGQWRVTLLDSAVPGSVPGFLADTQLQLLEQSLSEAPDRHHLICLHHHPVAIGCEWMAPIGLRNADALFAVLDRFAQVRAILWGHVHQEFDQMRNGVRLLASPSTCIQFAPGSVDFKVDTTAPGYRWLRLHDDGRLETAVSRVVGLEFEVDYGGTGY
>LT962480.1|SOP95498.1|634861_635227_+|Hypothetical-protein
MIIYRALIGGFTGLIFGLLLYVGLIILTGSTLRGEHSLYMAIIGAVIGILSLRLMPWIVHLAGLAGMILGVALELLLAGYLWPGMPYERVLSYLLGAGLAGMVSAGLIASIVLKHRANQQM
>LT962480.1|SOP95496.1|634457_634865_+|Hypothetical-protein
MSYLGSHLNHCRAVPFNWYDTWLVVVSGDGPNICGHALLKAGEFYFHIAGLAERPYFMSETDYRRYLNESSKTELFRRRILLTEPDAAQRKLEELSAKPWHWFGIPNNCVSYVEEIFSAGGSRESMITNCPVRWR
>LT962480.1|SOP95494.1|633808_634261_+|hypothetical-protein
MVVNLLRERYRVDLAGLQAACEANYARLMRLLPDMRNEQRSRRVAVTQGDQMLGVLAVEVLLDCPYTTTLQVRQEHSLPWLPVPKLEVQVYHDARMAEVIGAEHARRFRGIYPYPNADMHQPDEKAQLNLFLGEWLSHCLACGHEFEAVR
>LT962480.1|SOP95514.1|643849_645391_-|histidine-kinase
MNRPTPVKTDNFFLLIFRALRHRRVPIALRIASHNVILVALALVIYAGVMGLQFKQAMHEQADALGQALTTQTATSATELLVSNDILSLNVLLGNLVKNPLVAHAAIYSVDNRILAEAGQRPKNGLLGEAQGLYEIKITFQDVMAGHLRISLDMSQFQQPLTISLQSMGILAGILLALALALSLRLGRHISTPLMQMRIWLRDIDPYTPATDRQDEIGDLARQLRTSFAPPVPEPEPLPEPEYDGEEDDSEDPYLEPEEKPAPVVSARSSEAKPRLPAPPVQRRIVAEEDEDDDEDPFADLRDHSDNSPAVRPAAASVAPVEPHNSAVLAVQLGAQDQLRRLPRARLTELLQRYRDCLDQAASLYESELHTLNDGSTLMLFHSHESGDDYLTNAICCGELLRALSHALQIEVADSGITLQLQLGLTLGEGLSGLSQIDLLLTETAQDALALSQHSRNLLLVERRINDDPLIRQRARIRPIASPEGACCVERLMEPYPSMLERQLARMHESNKA
>LT962480.1|SOP95516.1|645479_646736_+|phosphoserine-phosphatase
MWLECVFFPLRGCALREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDTVQGSSVLKDILFTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRKVTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGKGCIEFTVRGEPADPKAMQAEFLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITERAMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGGFTYFAKQLQAKLGIDYVFANELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQTIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTLGLDGVLYLLGLRDREGKR
>LT962480.1|SOP95518.1|646801_648586_-|hypothetical-protein
MSNFSLPLLLRAPTPTQSSLTFSEANPRDLKRWISRLPKANLGEMARQLYQGLTELNQLITPSENRLQLLELLRPEVYFVCKHLERHFLNQAIVLDERPRKVANLCQALQNHLATGYKQIIQQVAPRYTRDQAGLFSTALQRAVHGLNGPLIRANQLYCPVQDGLWLELHQIYQIARQYQLHNTPVEEPLAHHSKVLSVEQTYVIALLMGCSRCNQMRQLNIGKLADALEAWSALVKLQSPATQSSLFALDPTADKPPLYRTLFSDEQSPRLLGINTLALAEAINQYLALPDDQRTPSPLLIPTGINTDLLQHLAVAWGDVAERTFQRTPGQGTLRLCIGMSALHFYVAGQKSFSELLQLNSATSAASFSLKMANDDADDPWASAFDTQRGKTSSVLLPYEEIEYPKNDGDSDSLSNNQHTFPTFDLNIVNHSPGGYCLAWQKDVPQQLQAGELVGIQDDAGQGWSVAIVRWIRQVRSGGTQMGIELIAPFAQPCGMQLIREQQNSQYLRTLMLPEVRAMEKPPTVLAPRLPFQEGSMVMINVNGEERRASLSNRQVSSASYNQFEYQMYDAPKAAEIEKGRPDQEFDSLWGTL
>LT962480.1|SOP95520.1|648841_650665_-|Phosphatidylserine-decarboxylase-proenzyme
MSAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAPGLLPDTAGLEQVFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAWEAQLLPMSTDVPPAADTPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVELPDVAAAPVEVAQPVEPAQPAPAETVEPVRATEPGRTSQKYSGHSSSGPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAFTAWFARRYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDATPGAILSPADGAISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMVYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLVTPPKRELKTFSYDEAARAPIHLEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQMGQALAVPAQA
>LT962480.1|SOP95522.1|650710_652246_-|hypothetical-protein
MPTVHAAHHLVPKTLDAWVKLLDGIALPVPAVNHGHVRAALNDSRRSLREIAEMMQESPALVLSVMREANHHTHGLTEQAESLEIAINRLGLARTEVLLGRLPAKPPEEIPAAYRQLILVSQHATQQANGLFASRLARLWQDIHMGSLLFLSPLWPMALAYPKLLEELELRVIHKGHSSAAVEKELFGVNLLELCLALAEFWRLPIWVTRGYKLLINERRDLAKALRIAREDNSPLQQQQLMDDDPNLRRWLNQPANTVLLGNGLALAAQNAWNSPHCLRWERLTSLYLQQSISEVQQQAHQNAASSARVHAEKDLWHPAESLIWPWDARRVRRDNEPAPPPSADALQMWRKQCAELLQDPSPFINAMHLTTSARDAFISCGMERVMLLMLDKTSTVLRVNQTAGLPKDAAALQLFIKESTVLQRLLTQPTQLRMTPANSAQFAALLPPPLKTLFSGQHWLIRSLSNNGKVMLLVVADQGGGALSEISVQAFGKTAQCIERALGIFSHRKA
>LT962480.1|SOP95524.1|652453_653305_+|Motility-protein-A
MAKIIGIIVVLASVIGGYVLSHGKVMALFQPYEVLIIGGAALGAFLQANPGYMFMHVFKKSLKMFGTRFTHAYYLEVLGLVYEILNKSRREGMMAIEGDIEDAASSPIFAKYPGVLKDERMTAYICDYLRIMSSGNMAPHELEGLFDMELLSMKEDLEHPSHAITGIADGMPGFGIVAAVLGIVVTMASLGSGDKAAIGMHVGAALVGTFFGILAAYGFFGPLATSLAHDAKEEMNVYEAIKASLVASASGMPPSLAVEFGRKVLYPLHRPSFSELEQAVRGR
>LT962480.1|SOP95525.1|653308_654358_+|flagellar-motor-protein-MotB
MENNQPIIIKRVKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEVQTTPSPDTVPLEAENAETKAEAVEQERLEMLLQELQTKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRQNPTNPINRRIDIVVLTKKAQHRIEGDQNSGGAPATPAAPTAPAPAVPAAPGAPAAPGASTAAPPDPQAYAQPHEIRQKLNIFDDGKLRVEPAQN
>LT962480.1|SOP95527.1|654419_655451_-|putative-ribosome-biogenesis-GTPase-RsgA
MAKRQLNRRQNWRIEKIQGERAARAAKRESATLETLEGGDLGPEQTGLVIAHFGVQVEVEAQEGEVTGQVFRCHLRANLPALVTGDRVVWRAGNQGIGVIVAQLPRTTELRRPDSRGQLKPVAANVDLIVIVFAPMPEPHANLIDRYLVAAEHAGIRPLLLLNKADLIDEQNAPALNALLAVYRTLGYPVLEVSAHHGDGMQSLQSQLDGHISVFVGQSGVGKSSLVNSLLPETDTRVGPLSEVSGQGTHTTTTARLFHFPRGGDLIDSPGIREFGLGHVSRADVEAGFIEFNDLIGTCRFRDCKHDREPGCALLKGLEDGRVQQQRMNSYRSIIASLPQDSY
>LT962480.1|SOP95529.1|655559_656096_+|Oligoribonuclease
MQNKQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENWFHYRNLDVSTLKELAARWSPELKFKKGSTHLALDDIRESIAELRFYREHFIKP
>LT962480.1|SOP95531.1|656192_656804_+|UPF0126-inner-membrane-protein
MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLIGHYPLTWVKHPEYLVLTSVAALVTIFIAPLMRHLRSLFLVLDALGLVAFTLIGCMTALEAGHGLLIASVCGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWCFLLCQYLQLPDEQAVLITLFGGLLLRLLAIRFRWEMPKFVYKDEP

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Crispr_ID: LT962480_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962480_2

1693560-1693696

Orphan

Consensus_repeat	Method
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962480_2

>merge|LT962480|2|1693560-1693696|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGCGTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACGCCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

>LT962480|2|2|1693560-1693696|CRISPRCasFinder
CCAATCCACCTGACATCACAGAACCGCTGTGTGACGCGGAGC	GTCACGAACGGCATTACCACGCGGAGCGTGGGAACGATAGTCGGGCCCGAACG
CCAATCCACCTGACATCACAGAACCTCTGTGTGACGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
LT962480.1\|SOP97358.1\|1694706_1695519_-\|Septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
LT962480.1\|SOP97367.1\|1699022_1699880_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379634
LT962480.1\|SOP97343.1\|1684068_1684875_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224441
LT962480.1\|SOP97369.1\|1699879_1700677_-\|dihydrodipicolinate-synthetase	unknown	unknown	gnl\|CDD\|188630
LT962480.1\|SOP97341.1\|1683229_1684072_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226616
LT962480.1\|SOP97353.1\|1693726_1694362_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|223638
LT962480.1\|SOP97347.1\|1686375_1687095_+\|putative-transcriptional-regulator-of-2-aminoethylphosphonate-degradation-operon	unknown	unknown	gnl\|CDD\|132380
LT962480.1\|SOP97365.1\|1698802_1699039_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239550
LT962480.1\|SOP97339.1\|1682445_1683243_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
LT962480.1\|SOP97362.1\|1696611_1697544_+\|Lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
LT962480.1\|SOP97349.1\|1687554_1691583_+\|Ice-nucleation-protein	unknown	unknown	unknown
LT962480.1\|SOP97336.1\|1681454_1682444_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	unknown	unknown	gnl\|CDD\|226361
LT962480.1\|SOP97360.1\|1695750_1696611_-\|putative-septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
LT962480.1\|SOP97345.1\|1684953_1686021_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270267
LT962480.1\|SOP97334.1\|1680681_1681335_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
LT962480.1\|SOP97364.1\|1697576_1698761_+\|patatin	unknown	unknown	gnl\|CDD\|132848
LT962480.1\|SOP97370.1\|1700666_1701185_-\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOP97332.1\|1679699_1680662_+\|Quinone-oxidoreductase-PIG3	unknown	unknown	gnl\|CDD\|176180
LT962480.1\|SOP97355.1\|1694452_1694707_-\|Cell-division-topological-specificity-factor	unknown	unknown	gnl\|CDD\|234718
LT962480.1\|SOP97351.1\|1691834_1693124_-\|putative-M18-family-aminopeptidase-2	unknown	unknown	gnl\|CDD\|235073

Protein	Function_ID	Function_description	E-value
LT962480.1\|SOP97358.1\|1694706_1695519_-\|Septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
LT962480.1\|SOP97367.1\|1699022_1699880_-\|hypothetical-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20
LT962480.1\|SOP97343.1\|1684068_1684875_-\|hypothetical-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	3.67462e-39
LT962480.1\|SOP97369.1\|1699879_1700677_-\|dihydrodipicolinate-synthetase	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.52189e-37
LT962480.1\|SOP97341.1\|1683229_1684072_-\|ABC-transporter-permease	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.03847e-111
LT962480.1\|SOP97353.1\|1693726_1694362_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.3798e-77
LT962480.1\|SOP97347.1\|1686375_1687095_+\|putative-transcriptional-regulator-of-2-aminoethylphosphonate-degradation-operon	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	2.74565e-82
LT962480.1\|SOP97365.1\|1698802_1699039_-\|hypothetical-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.48988e-09
LT962480.1\|SOP97339.1\|1682445_1683243_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.2364e-59
LT962480.1\|SOP97362.1\|1696611_1697544_+\|Lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
LT962480.1\|SOP97336.1\|1681454_1682444_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	8.21531e-147
LT962480.1\|SOP97360.1\|1695750_1696611_-\|putative-septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	1.14138e-161
LT962480.1\|SOP97345.1\|1684953_1686021_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.29243e-58
LT962480.1\|SOP97334.1\|1680681_1681335_-\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.6194e-57
LT962480.1\|SOP97364.1\|1697576_1698761_+\|patatin	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.50264e-39
LT962480.1\|SOP97332.1\|1679699_1680662_+\|Quinone-oxidoreductase-PIG3	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	8.68834e-151
LT962480.1\|SOP97355.1\|1694452_1694707_-\|Cell-division-topological-specificity-factor	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46
LT962480.1\|SOP97351.1\|1691834_1693124_-\|putative-M18-family-aminopeptidase-2	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0

>LT962480.1|SOP97351.1|1691834_1693124_-|putative-M18-family-aminopeptidase-2
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLSGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>LT962480.1|SOP97349.1|1687554_1691583_+|Ice-nucleation-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>LT962480.1|SOP97347.1|1686375_1687095_+|putative-transcriptional-regulator-of-2-aminoethylphosphonate-degradation-operon
MREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIHVRAEVHGD
>LT962480.1|SOP97345.1|1684953_1686021_-|ABC-transporter-substrate-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSEIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRVEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>LT962480.1|SOP97343.1|1684068_1684875_-|hypothetical-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHAAGRAALYKIECELPALSRPLYECILTGVAPIDSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPARDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGIPHDKPVCREIFN
>LT962480.1|SOP97341.1|1683229_1684072_-|ABC-transporter-permease
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWENFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDSRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>LT962480.1|SOP97339.1|1682445_1683243_-|ABC-transporter-permease
MSRVERGPASIYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>LT962480.1|SOP97336.1|1681454_1682444_-|Spermidine/putrescine-import-ATP-binding-protein-PotA
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGRILLDGSDLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVAEILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVKLVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>LT962480.1|SOP97334.1|1680681_1681335_-|HAD-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSEGKLAMEDYMAFSLEPMAGRTPEEIDHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHAQKAGWPVHDWS
>LT962480.1|SOP97332.1|1679699_1680662_+|Quinone-oxidoreductase-PIG3
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSSWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVIDESLV
>LT962480.1|SOP97353.1|1693726_1694362_-|Ribosomal-large-subunit-pseudouridine-synthase-A
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERLTFECAAPF
>LT962480.1|SOP97355.1|1694452_1694707_-|Cell-division-topological-specificity-factor
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>LT962480.1|SOP97358.1|1694706_1695519_-|Septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>LT962480.1|SOP97360.1|1695750_1696611_-|putative-septum-site-determining-protein-MinC
MGFRQNKGRAFYNGSGRLRLAGVLAISLGTFSDKLLCISTMSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>LT962480.1|SOP97362.1|1696611_1697544_+|Lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQEKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQRRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>LT962480.1|SOP97364.1|1697576_1698761_+|patatin
MPDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLRLT
>LT962480.1|SOP97365.1|1698802_1699039_-|hypothetical-protein
MNEPAEFRRPDTFTVHIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>LT962480.1|SOP97367.1|1699022_1699880_-|hypothetical-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>LT962480.1|SOP97369.1|1699879_1700677_-|dihydrodipicolinate-synthetase
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQQVATLNQRYLLNAPDWYAHIKRELRARGVINSERVVTEEAA
>LT962480.1|SOP97370.1|1700666_1701185_-|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFESTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVW

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Click the colored protein region to show detailed information

Crispr_ID: LT962480_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962480_3

4461831-4461932

Unclear

Consensus_repeat	Method
GCTCCGCATGGGTATGCCGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LT962480_3

>merge|LT962480|3|4461831-4461932|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCTGGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCATGCTCCGCGTGGGTATGCCGTTCT

>LT962480|3|3|4461831-4461932|CRISPRCasFinder
GCTCCGCATGGGTATGCCGTTCT	GGACGCTCTGCCTCCTGCCTTGAGTGCGCGGACAGCTCTCTGACTATCGTACCCAT
GCTCCGCGTGGGTATGCCGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
LT962480.1\|SOQ01908.1\|4459003_4459516_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ01900.1\|4456256_4456658_-\|membrane-protein	unknown	unknown	gnl\|CDD\|378319
LT962480.1\|SOQ01912.1\|4460458_4461322_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ01897.1\|4455394_4455586_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283241
LT962480.1\|SOQ01915.1\|4462417_4463755_-\|RNA-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
LT962480.1\|SOQ01902.1\|4456802_4457435_+\|DSBA-oxidoreductase	unknown	unknown	gnl\|CDD\|239322
LT962480.1\|SOQ01919.1\|4465152_4465842_-\|Transcriptional-regulatory-protein-CpxR	unknown	unknown	gnl\|CDD\|223816
LT962480.1\|SOQ01926.1\|4469971_4470754_+\|NAD(P)H-dehydrogenase	unknown	unknown	gnl\|CDD\|225158
LT962480.1\|SOQ01898.1\|4455798_4456179_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ01910.1\|4459660_4460389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
LT962480.1\|SOQ01917.1\|4463905_4465156_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|236532
LT962480.1\|SOQ01932.1\|4473208_4474102_+\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
LT962480.1\|SOQ01930.1\|4471839_4473102_-\|Transcription-regulatory-protein-OpdE	unknown	unknown	gnl\|CDD\|225371
LT962480.1\|SOQ01906.1\|4458656_4458836_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ01921.1\|4466058_4468431_+\|membrane-protein	unknown	unknown	gnl\|CDD\|274514
LT962480.1\|SOQ01904.1\|4457504_4458341_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
LT962480.1\|SOQ01922.1\|4468550_4468964_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ01924.1\|4468983_4469883_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
LT962480.1\|SOQ01928.1\|4470814_4471780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223999
LT962480.1\|SOQ01894.1\|4454205_4455171_-\|ribonuclease-BN	unknown	unknown	gnl\|CDD\|224214

Protein	Function_ID	Function_description	E-value
LT962480.1\|SOQ01919.1\|4465152_4465842_-\|Transcriptional-regulatory-protein-CpxR	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.70776e-76
LT962480.1\|SOQ01917.1\|4463905_4465156_-\|histidine-kinase	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	1.00056e-50
LT962480.1\|SOQ01897.1\|4455394_4455586_-\|hypothetical-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09
LT962480.1\|SOQ01915.1\|4462417_4463755_-\|RNA-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
LT962480.1\|SOQ01902.1\|4456802_4457435_+\|DSBA-oxidoreductase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	7.203e-44
LT962480.1\|SOQ01921.1\|4466058_4468431_+\|membrane-protein	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
LT962480.1\|SOQ01932.1\|4473208_4474102_+\|putative-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.88223e-113
LT962480.1\|SOQ01910.1\|4459660_4460389_+\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
LT962480.1\|SOQ01930.1\|4471839_4473102_-\|Transcription-regulatory-protein-OpdE	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.58435e-103
LT962480.1\|SOQ01926.1\|4469971_4470754_+\|NAD(P)H-dehydrogenase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	2.22825e-64
LT962480.1\|SOQ01904.1\|4457504_4458341_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.89195e-109
LT962480.1\|SOQ01900.1\|4456256_4456658_-\|membrane-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	4.24722e-43
LT962480.1\|SOQ01924.1\|4468983_4469883_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.40123e-96
LT962480.1\|SOQ01928.1\|4470814_4471780_-\|hypothetical-protein	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	1.4209e-45
LT962480.1\|SOQ01894.1\|4454205_4455171_-\|ribonuclease-BN	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.83791e-66

>LT962480.1|SOQ01912.1|4460458_4461322_+|hypothetical-protein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>LT962480.1|SOQ01910.1|4459660_4460389_+|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>LT962480.1|SOQ01908.1|4459003_4459516_+|hypothetical-protein
MKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>LT962480.1|SOQ01906.1|4458656_4458836_+|hypothetical-protein
MRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>LT962480.1|SOQ01904.1|4457504_4458341_-|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIELV
>LT962480.1|SOQ01902.1|4456802_4457435_+|DSBA-oxidoreductase
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMADRRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATTTGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>LT962480.1|SOQ01900.1|4456256_4456658_-|membrane-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLDTPVLGPAIAFYLLYGAGVVFFGVMPALRVQRLSHATLCSGLLGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>LT962480.1|SOQ01898.1|4455798_4456179_+|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>LT962480.1|SOQ01897.1|4455394_4455586_-|hypothetical-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>LT962480.1|SOQ01894.1|4454205_4455171_-|ribonuclease-BN
MIFPHLRKLKVGKVLVRTVNEFLDDEMSTYASALAYQMLFSLFPFLLFLIALIGFLHLPDFFSWLRLQSEFLLPPQALEQVNPVIDQLQQSKGGLLSIGIVIALWTASAGVRLMMSAMNAAYDVVEGRPIWKRLPLSILYTVGIAGMLLAAAAFMVLGPQVMNWIAAQIGMEDFIVTLWTILRWPAIIILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIVASLAFGFYVKTFADYNAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSAEGKDAGEKEAGDGGEESSETVKQHVSGLGRDHSVPLQKADEA
>LT962480.1|SOQ01915.1|4462417_4463755_-|RNA-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>LT962480.1|SOQ01917.1|4463905_4465156_-|histidine-kinase
MRPNRLFWKLFLAFWLATSLTFMVGAGLFMFTQSGRGDPSFSTVLDNEVRILQRSGIAAGRALLDTWQPEGQGRVGLYDNQGLLLAGEALENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPSQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCRVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGSDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>LT962480.1|SOQ01919.1|4465152_4465842_-|Transcriptional-regulatory-protein-CpxR
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGATLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLITP
>LT962480.1|SOQ01921.1|4466058_4468431_+|membrane-protein
MISSRLLLSFCLLISVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTEDLVKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSSNLITRRLGNDGYTFANVNGVPKANVADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGTYASQGQIYYSDRDTEALGGNILISGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>LT962480.1|SOQ01922.1|4468550_4468964_+|hypothetical-protein
MSREVRQITPDVQEIIQHALRSLLGKGFVIALFGSEDATGAMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVVQTAEAAGRECLSALRERRLRA
>LT962480.1|SOQ01924.1|4468983_4469883_-|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPGRDFDPATADHTWRVAASDYATIALIWPSLGRLRNSAPGTRLAMLNKHPISLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLVQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTSSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>LT962480.1|SOQ01926.1|4469971_4470754_+|NAD(P)H-dehydrogenase
MNVLIVYAHPEPRSLNGSLKDFAVDHLQNNGHQVQVSDLYQMGWKPIIDANDAPGLESSSRFDPALESQRVFAAGIQPPDIEAEQARLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDQHWGDRYGEGTLAGKRAMLTVTMGGWESHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSATFARICADYGNRLDTLFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLGIHLRDQ
>LT962480.1|SOQ01928.1|4470814_4471780_-|hypothetical-protein
MSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPKGSNPNVKAPAIIVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKKRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVDKLTDTSGPIEREFYDFYRTPRGEFTPEGQSPELTTHPTLTSNIKFMNFYPFNDIATISPRPMLFIAGSKAHSLEFSEEAYKLAGQPKQLIIVPEAGHVDLYDRVDLIPFDKLGEFFKNNLK
>LT962480.1|SOQ01930.1|4471839_4473102_-|Transcription-regulatory-protein-OpdE
MQAFDSTLKQSEITTHPPAWGAVFSMALCVVVLIASEFMPVSLLTPIAQDLGISQGQAGQAISISGFFAVLTSLLNTPLTGHLDRKPVLLGFSLLLLVSGVIVTLASNGWLFMTGRALLGIAIGGFWSMSTATVMKLVPKQSVAKGLALINGGNALAATVAAPLGSFMGQYIGWRGAFFLVIPLAALAFAWQWLSLPAMRSQPHNRARNPFRLLRNPQVAVGMSAILLLFMGQFAVFTYLRPFLEEITGVSVNTLSLMLLALGASGLVGTYLIGRLLHKGLYACLIVIPLLMAVLAVALTGLGHSPQAVAIVLAVWGLIATPAPVAWGLWLSRTLPDDAEAGGGLMVATIQLAITAGAGIGGALFDSLGWWSPFAFGGVLLACSAALAWTARDNALLQEKNTGQGRADKRGSISQRGNTP
>LT962480.1|SOQ01932.1|4473208_4474102_+|putative-transcriptional-regulator
MSTPKLNDLQAFLQVARDQSFTKAATKLGVTPSALSHTLRGLEERMGLRLLARTTRNVAPTEAGERLMRSIGPLLDQIAAEVEVLGELRDKPAGTIRITCSDDAAEGIIRPMLAGFLAQYPDIQVEICIDYGFTNIVSERFDAGIRLGESISKDMIAVRLGPDWRLSVVGSPAYFERHPVPLQPQDLTQHTCINIRHSPNGSCYAWEFEKGSRKLNIRVNGQFTSNSMIHVLNAALDGVGLAYVPDSMAEPHIASGRLKEVLVDWSPYFEGFHLYYPNRRQASPAFSAFVEAVRYRG

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Click the colored protein region to show detailed information

Crispr_ID: LT962480_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962480_4

5728185-5728260

Orphan

Consensus_repeat	Method
TCGTTCCTCACGCTCCAGCGTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962480_4

>merge|LT962480|4|5728185-5728260|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGAGCGATAATCATATGGCCGCACGATTATCGTTCCGCACGCTCCAGCGTGGGA

>LT962480|4|4|5728185-5728260|CRISPRCasFinder
TCGTTCCTCACGCTCCAGCGTGGGA	GCGATAATCATATGGCCGCACGATTA
TCGTTCCGCACGCTCCAGCGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
LT962480.1\|SOQ04047.1\|5723337_5724702_-\|Gamma-aminobutyrate-transaminase-1,-mitochondrial	unknown	unknown	gnl\|CDD\|180994
LT962480.1\|SOQ04070.1\|5735519_5736317_-\|putative-aliphatic-sulfonates-transport-permease-protein-SsuC	unknown	unknown	gnl\|CDD\|183100
LT962480.1\|SOQ04037.1\|5717837_5718719_-\|Putrescine-transport-system-permease-protein-PotI	unknown	unknown	gnl\|CDD\|182574
LT962480.1\|SOQ04049.1\|5724770_5726129_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
LT962480.1\|SOQ04053.1\|5728558_5729203_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LT962480.1\|SOQ04062.1\|5733011_5733311_-\|transposase	unknown	unknown	gnl\|CDD\|225511
LT962480.1\|SOQ04045.1\|5722096_5723194_-\|Putrescine-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|270377
LT962480.1\|SOQ04043.1\|5720830_5721925_-\|Putrescine-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|270377
LT962480.1\|SOQ04066.1\|5734468_5734684_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226113
LT962480.1\|SOQ04055.1\|5729234_5730314_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
LT962480.1\|SOQ04035.1\|5716937_5717543_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ04051.1\|5726723_5728100_+\|Gamma-glutamylputrescine-synthetase-PuuA	unknown	unknown	gnl\|CDD\|223252
LT962480.1\|SOQ04039.1\|5718715_5719636_-\|Putrescine-transport-system-permease-protein-PotH	unknown	unknown	gnl\|CDD\|182646
LT962480.1\|SOQ04059.1\|5731795_5731939_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ04064.1\|5733326_5734334_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
LT962480.1\|SOQ04061.1\|5732133_5732796_-\|Transposase-InsF-for-insertion-sequence-IS3	unknown	unknown	gnl\|CDD\|222853
LT962480.1\|SOQ04041.1\|5719632_5720775_-\|Putrescine-transport-ATP-binding-protein-PotG	unknown	unknown	gnl\|CDD\|183226
LT962480.1\|SOQ04057.1\|5730542_5731628_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
LT962480.1\|SOQ04033.1\|5716683_5716911_+\|hypothetical-protein	unknown	unknown	unknown
LT962480.1\|SOQ04068.1\|5734710_5735523_-\|Aliphatic-sulfonates-import-ATP-binding-protein-SsuB-3	unknown	unknown	gnl\|CDD\|183055

Protein	Function_ID	Function_description	E-value
LT962480.1\|SOQ04047.1\|5723337_5724702_-\|Gamma-aminobutyrate-transaminase-1,-mitochondrial	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
LT962480.1\|SOQ04070.1\|5735519_5736317_-\|putative-aliphatic-sulfonates-transport-permease-protein-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	1.60766e-137
LT962480.1\|SOQ04037.1\|5717837_5718719_-\|Putrescine-transport-system-permease-protein-PotI	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.58132e-118
LT962480.1\|SOQ04049.1\|5724770_5726129_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	3.38043e-153
LT962480.1\|SOQ04053.1\|5728558_5729203_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.6796e-09
LT962480.1\|SOQ04062.1\|5733011_5733311_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.31452e-12
LT962480.1\|SOQ04045.1\|5722096_5723194_-\|Putrescine-binding-periplasmic-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
LT962480.1\|SOQ04043.1\|5720830_5721925_-\|Putrescine-binding-periplasmic-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
LT962480.1\|SOQ04055.1\|5729234_5730314_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	2.19612e-30
LT962480.1\|SOQ04051.1\|5726723_5728100_+\|Gamma-glutamylputrescine-synthetase-PuuA	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.39638e-154
LT962480.1\|SOQ04039.1\|5718715_5719636_-\|Putrescine-transport-system-permease-protein-PotH	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	9.92225e-152
LT962480.1\|SOQ04064.1\|5733326_5734334_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.50739e-30
LT962480.1\|SOQ04066.1\|5734468_5734684_-\|hypothetical-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	1.14695e-16
LT962480.1\|SOQ04061.1\|5732133_5732796_-\|Transposase-InsF-for-insertion-sequence-IS3	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.26517e-65
LT962480.1\|SOQ04041.1\|5719632_5720775_-\|Putrescine-transport-ATP-binding-protein-PotG	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
LT962480.1\|SOQ04057.1\|5730542_5731628_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	6.84115e-30
LT962480.1\|SOQ04068.1\|5734710_5735523_-\|Aliphatic-sulfonates-import-ATP-binding-protein-SsuB-3	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	8.46185e-172

>LT962480.1|SOQ04051.1|5726723_5728100_+|Gamma-glutamylputrescine-synthetase-PuuA
MSVPPRAVQLNEANAFLKEHPEVLYVDLLIADMNGVVRGKRIERTSLHKVYEKGINLPASLFALDINGSTVESTGLGLDIGDADRICYPIPDTLCNEPWQKRPTAQLLMTMHELEGDPFFADPREVLRQVVAKFDEMGLTICAAFELEFYLIDQENVNGRPQPPRSPISGKRPHSTQVYLIDDLDEYVDCLQDILEGAKEQGIPADAIVKESAPAQFEVNLHHVADAIKACDYAVLLKRLIKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISILDRDGKNIFTSEDPEQNAALRHAIGGVLETLPAQMAFLCPNVNSYRRFGAQFYVPNSPTWGLDNRTVAVRVPTGTADAVRIEHRVAGADANPYLVMASVLAGVHHGLVNKVEPGAPVEGNSYEQHEQSLPNNLRDALRELDDNPVMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>LT962480.1|SOQ04049.1|5724770_5726129_-|glutamine-synthetase
MSTNLDQLTDWLKEHKITEVECMMSDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYELLDPADIDMICRPDQNAVYLVPWAVEPTAQVIHDTYDKQGNPIELSPRNVLKKVLKLYADQGWQPIVAPEMEFYLTKRSDDPDYPLQPPIGRSGRPETGRQSFSIEAANEFDPLFEDVYDWCELQNLDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALKHDVAATFMAKPMTGEPGSAMHLHQSIIDIETGKNIFSNEDGTMSELFLNHVGGLQKFIPELLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAVPQNRRVENRLPGADANPYLAIAASLLCGFIGMVEGINPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGKKFIIGYVAVKRAEHENFKRVISSWEREFLLFAV
>LT962480.1|SOQ04047.1|5723337_5724702_-|Gamma-aminobutyrate-transaminase-1,-mitochondrial
MSANNPQTLEWQALSSEHHLAPFSDYKQLKEKGPRIITRAEGVYLWDSEGNKILDGMSGLWCVAIGYGREELADAASKQMRELPYYNLFFQTAHPPVLELAKAISDIAPEGMNHVFFTGSGSEGNDTMLRMVRHYWALKGQPNKKTIISRVNGYHGSTVAGASLGGMTYMHEQGDLPIPGVVHIPQPYWFGEGGDMTPDEFGIWAAEQLEKKILELGVESVGAFIAEPIQGAGGVIVPPDSYWPKIKEILSRYDILFAADEVICGFGRTSEWFGSDFYGLKPDMMTIAKGLTSGYVPMGGLIVRDEIVAVLNEGGDFNHGFTYSGHPVAAAVALENIRILREEKIVERVRSETAPYLQKRLRELSDHPLVGEVRGVGLLGAIELVKDKTTRERYTDKGAGMICRTFCFDNGLIMRAVGDTMIIAPPLVISFAQIDELVEKARKCLDLTLAVLQG
>LT962480.1|SOQ04045.1|5722096_5723194_-|Putrescine-binding-periplasmic-protein
MKKFGKTLLALSLMGVVATAAQADDKVLHVYNWSDYIAPDTVAKFEKESGIKVVYDVFDSNETLEAKLLAGKSGYDVVVPSNNFLAKQIKAGVYQELDKSKLPNWKNLNESLLKAVSVSDPDNKYAFPYMWGSIGIGINPDKVKAALGADAPVNSWDLLFKPENAAKLKSCGISFLDSPTEMLPIALHYLDYPTDSQDKKQLAKAEELFMTIRPSIGYFHSSKYISDLANGNICVAVGYSGDIYQAKSRAAEAGGKVKVAYNIPKKGAGSFYDMVAIPKDAQNVEGAYKFMNFLMRPEVMAEITNAVRFPNGNAAATALVDKEITSDPGVYPPADVQAKLYAIADLPAATQRIMTRSWTKIKSGE
>LT962480.1|SOQ04043.1|5720830_5721925_-|Putrescine-binding-periplasmic-protein
MSISILSKALLAAAGLTLTLGAQAKSTVHIYNWSDYIGKTTLTDFEATTGIKPMYDVFDSNETLEAKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLPNYKNLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNVEKVKAVLGVDKIDSWAVLFEPENIKKLSSCGVAFLDSADEMLPAVLNYLGLDPNSTKEADYKKAEAKLMAIRPYVTYFHSSKYITDLANGDICVAAGFSGDVFQAKARAEEAGKGVKLAYSIPKEGGNLWFDMLAIPADSKNIKEASAFINYMLDPRVIAKVSDEVGYANPNPASGEFMDQKIRTDAAVYPPQEVLDRLFVNSELPPKVQRLMTRSWTKVKSGK
>LT962480.1|SOQ04041.1|5719632_5720775_-|Putrescine-transport-ATP-binding-protein-PotG
MAVASGAYKKALEGGQQPKEVLVKIDRVTKKFDETIAVDDVSLQINKGEIFALLGGSGSGKSTLLRMLAGFERPTDGRIYLDGVDITDMPPYERPINMMFQSYALFPHMTVADNIAFGLKQDKLGKPEIEARVAEMLKLVQMTQYAKRKPHQLSGGQRQRVALARSLAKKPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGWIAQIGSPIDIYETPTSRLVCEFIGSVNLFEGDVIEDMEAHALIRSPELERNIYVGHGVSTSVEDKHITYALRPEKLLITTEQPGFEYNWSRGKVHDIAYLGGHSVFYVELPGGKLVQSFVANAERQGARPTWGDEVYVWWEDDSGVVLRS
>LT962480.1|SOQ04039.1|5718715_5719636_-|Putrescine-transport-system-permease-protein-PotH
MKIRKIKRAFERIKPNGRQMVIGVPFLWLFLFFALPFLIVLKISFAEADVAIPPYTEIFSYADEKLQMVLNFANYTLLSGDDLYVSAYLGSLKMAFISTLLCLLIGYPMAYAIASARKDLQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNAFLMWLGLIDAPLQILNTNLAVYIGVVYSYLPFMILPLYANLVKHDTSLLEAASDLGSSTFNSFWKITVPLSKNGVIAGCMLVFIPVVGEFVIPELLGGPETLMIGRVLWQEFFNNRDWPVASALAVIMLLVLIVPIILFNRSQAKELEGKA
>LT962480.1|SOQ04037.1|5717837_5718719_-|Putrescine-transport-system-permease-protein-PotI
MNRFRFSNLMLVLGLLFIYAPMVILVIYSFNASQLVTVWGGWSVKWYVGLLDNSQLMGSVMRSLEIACYTAVAAVALGTMAAFVLTRISRFKGRTFFGGLVTAPLVMPEVITGLSLLLLFVAMAQMIGWPQERGIMTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSLATFLVWFFTRRAENNRKRAIQQAIEESAADAWKQPDPRRAPAA
>LT962480.1|SOQ04035.1|5716937_5717543_+|hypothetical-protein
MGLLPGGRGSELARELSGTDSETVTYGTSGTTEVAGLAAGPRQFANKFAPTPCGQNQERTCDQRLREQVRSYALRAESVYRPDQAASRRFAAGAGGVATLSVPSPEMGLLPGGRASELSGTDSETVTYGTSGTTEVAGFAAGPRQFASKFLRPSARIKSGPATNVFASKLTPTPCGQNQERTCVSRPIRLLPGVLRLVQGA
>LT962480.1|SOQ04033.1|5716683_5716911_+|hypothetical-protein
MGLLPGGRGSELARELSGTDSETVTYGTSGTIEVAGLAAGPRQFANKFAPTPCGQNLCIAPIRLLPGVLRLVQGA
>LT962480.1|SOQ04053.1|5728558_5729203_+|TetR-family-transcriptional-regulator
MTRAATPRKPQARSQARIDSILDAARTLLAEQGVASLSIYSVAERAGIPPSSVYHFFASVPALLEALTADIHAAFRASLQAPIDHDQLTTWRDLSRIVELRMLAIYNADAAARQLILAQHGLTEINQADRQHDIELGHLMLEVFDRHFQLPALPDDVDVFALAMELGDRVYARSVQLHDEITPRMAEEGMRVFDAYLGLYLPVFLVKRKISPLQ
>LT962480.1|SOQ04055.1|5729234_5730314_-|hypothetical-protein
MASLDPIMLCTYRYDPLDRLASSSPVGRADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRHVDGVVDTTLLATDQQRSVLRLVDEAGIEPVAYSPYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGFVDPSGHAPYNRLLRRALENARLKSPSRKDRISTRLLRVLGKRSEAPPSREGKPLPISPLASTSAASSPPPSTTSTLQAPDKGRPAMTTPAMTWEYRVKKAEEFHHPVSTAVPTDFEVAKIYLERHLKRLLDVENTILFYKSNRAVDTGNFIEAGPSQFYKAILLRDINAFKVYAAGMSRKHRKAIRKQR
>LT962480.1|SOQ04057.1|5730542_5731628_-|hypothetical-protein
MTSPDQTVLCKYRYDPLDRLASSSPAGQADVQRFYQKNRLATEIEGASRRTVFQHEDLLLAQQRRVEGAIETTLLATDQQRSVLRLVDKSGVEPVAYSAYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPVGVVDPSGHMPFSILIQAADMIEKFGPQAATLIAQRALQGVSPAARVLGGKHTPAAVPSLVSKKASKLPSASASASTSTSSAKSVSSRRRTEQRRTLELKRKNLINGLSTRLPIDESSAKRRYERFEGRVRDAEYLIEHYTKNPERVKHSIINPSQSRELFGAKLVNAETNFNAYRKKYIEKFGEYVRDPPKDK
>LT962480.1|SOQ04059.1|5731795_5731939_+|hypothetical-protein
MGLGDRVYARSVQLHDEITPRMTEEGMRGFDAYLGLYLPVFLVKRAV
>LT962480.1|SOQ04061.1|5732133_5732796_-|Transposase-InsF-for-insertion-sequence-IS3
MLADGVRVGKERVQKLMQLHGICGKGKRRFKVTTDSAHDLPISENLLDRQFAVMEPDRAWVGDITYIPTDEGWLFLAVVVDLFSRQIVGWSMDERMKSSLVIDALRMAWFKRHPHKASGLLFHSDRGSQYASFDFRHVLQGYGIVSSMSRRGNCWDNACSETVFGSLKVERLHGLKFKTRRAAKDEVINWLLWYNQERLHSTLHYVSPMQYEQNWQRQQP
>LT962480.1|SOQ04062.1|5733011_5733311_-|transposase
MTKPKTDRVKYTLEFKLEAVRLVDTGLTLAAAARSLGISDQTLFNWVKAHRQGRLTGADIKSVTPEQMEISRLRAELARVKMERDILEKATAYFAKASS
>LT962480.1|SOQ04064.1|5733326_5734334_-|hypothetical-protein
MTSSNQAVLCRYSYDPLDRLVSSSPVGQADVQRFYQKNRLATEIEGASRRTVFQHGDLLLAQQRHVDGLVNTTLLATDQQRSVLRVVDKSGVEPVAYSAYGHHPAESGLTSLLGFNGERRDPVTGHYLLGNGYRAYNPVLMRFNSPDSLSPFDEGGLNAYGYCGGDPIGYVDPSGHIAAGLLNKILLSGEIRRSPLTRTPLSQLSDMVDRLPAISSSPSPIASSSAAISSGSLGIGMPASSTTKLNPLAPSGVSKKRGGRQTSFAKRDSTVRDAREKYRAALETAGIKKHTPGTRIYIDGKLEAEVFTTSIRYLETKIAYIDLAPEKRIPCQVPQ
>LT962480.1|SOQ04066.1|5734468_5734684_-|hypothetical-protein
MTIKAINVRNQFKGTIKEIVHGDVLSEIDVQTASGVVTSVITTRSVKELELVVGSEVIAFVKSTEVSIAKL
>LT962480.1|SOQ04068.1|5734710_5735523_-|Aliphatic-sulfonates-import-ATP-binding-protein-SsuB-3
MTSLKQQPPHLLRGIPLAVRKLKKAFGAREVLKDIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDKPTQGQLLAGSAPLDDAREDTRLMFQEARLLPWKKIIDNVGLGLSGDWRAQALEALEAVGLAERANEWPAALSGGQKQRVALARALIHKPRLLLLDEPLGALDALTRIEMQQLIEKLWGQYGFTVLLVTHDVSEAVAIADRVILIEEGQIGLDLLVDLPRPRVRGSHRLAALEAEVLNRVLALPGSPPDPEPFSPLPTQLRWAN
>LT962480.1|SOQ04070.1|5735519_5736317_-|putative-aliphatic-sulfonates-transport-permease-protein-SsuC
MSLSASQRIVHRLAPWALPVLLLAVWQLSVSAGWLSTRILPAPSAVIEAGINLVASGEIWTHLAISGWRAGIGFAIGGGIGLALGFITGLSKWGERLLDSSVQMIRNVPHLALIPLVILWFGIDETAKIFLVALGTLFPIYLNTYHGIRNIDPALVEMSRSYGLSGFSLFRHVILPGAMPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAIVLYAVLGKLADLAARGLERVCLRWHPAYQTSKGGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2405311 : 2460636

Pseudomonas_phage(65.31%)

tRNA,head,terminase,capsid,integrase,tail

attL 2412714:2412767|attR 2461794:2461847

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOP98497.1\|2405311_2407234_+\|tRNA	Threonine-tRNA ligase	A0A2K9L297	Tupanvirus	1.8e-125	37.7
SOP98499.1\|2407251_2407785_+	Translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	8.9e-14	37.3
SOP98501.1\|2407845_2408040_+	hypothetical protein	NA	NA	NA	NA
SOP98503.1\|2408069_2408426_+	50S ribosomal protein L20	NA	NA	NA	NA
SOP98505.1\|2408530_2409547_+\|tRNA	Phenylalanine-tRNA ligase alpha subunit	A0A2K9L3A8	Tupanvirus	8.4e-29	39.3
SOP98507.1\|2409574_2411953_+\|tRNA	Phenylalanine-tRNA ligase beta subunit	NA	NA	NA	NA
SOP98510.1\|2411956_2412259_+	Integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
SOP98512.1\|2412239_2412596_+	MerR family transcriptional regulator	NA	NA	NA	NA
2412714:2412767	attL	NA	NA	NA	NA
SOP98513.1\|2412849_2413962_-	hypothetical protein	A0A0U4JIT5	Pseudomonas_phage	4.0e-32	31.4
SOP98515.1\|2413961_2414174_-	hypothetical protein	NA	NA	NA	NA
SOP98516.1\|2414211_2414673_-	hypothetical protein	A0A0U4IIZ7	Pseudomonas_phage	6.7e-58	71.5
SOP98518.1\|2414724_2415054_-	putative prophage PSSB64-02, Orf61	A0A059VA44	Pseudomonas_phage	4.4e-56	91.0
SOP98521.1\|2415108_2415267_-	hypothetical protein	NA	NA	NA	NA
SOP98522.1\|2415263_2415476_-	hypothetical protein	A0A0A8IL71	Aurantimonas_phage	8.1e-11	54.8
SOP98524.1\|2415472_2415949_-	hypothetical protein	A0A2H4PI30	Pseudomonas_phage	1.7e-27	64.3
SOP98526.1\|2415945_2416401_-	hypothetical protein	I6NP82	Burkholderia_phage	1.9e-09	32.3
SOP98528.1\|2416865_2417489_+	hypothetical protein	K7PJU1	Enterobacteria_phage	3.2e-39	42.4
SOP98530.1\|2417843_2418656_-	hypothetical protein	K7ZMK3	Xanthomonas_citri_phage	3.9e-45	39.3
SOP98532.1\|2418696_2419050_-	Prophage PssSM-02, Orf14	NA	NA	NA	NA
SOP98534.1\|2419135_2419723_-	hypothetical protein	NA	NA	NA	NA
SOP98536.1\|2419722_2420061_-	hypothetical protein	NA	NA	NA	NA
SOP98537.1\|2420499_2420901_-	LuxR family transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	1.2e-18	61.7
SOP98539.1\|2421248_2421857_+	hypothetical protein	NA	NA	NA	NA
SOP98541.1\|2422125_2422671_+	hypothetical protein	NA	NA	NA	NA
SOP98543.1\|2422790_2422976_+	hypothetical protein	NA	NA	NA	NA
SOP98545.1\|2423426_2423666_-	hypothetical protein	NA	NA	NA	NA
SOP98547.1\|2423711_2424245_-	peptidase	K7PH71	Enterobacterial_phage	1.2e-37	50.6
SOP98549.1\|2424502_2424742_+	hypothetical protein	A0A2H4J0V8	uncultured_Caudovirales_phage	3.8e-25	74.7
SOP98551.1\|2425118_2425538_-	hypothetical protein	NA	NA	NA	NA
SOP98552.1\|2425742_2426519_+	Prophage PssSM-03, Orf42	NA	NA	NA	NA
SOP98554.1\|2426515_2427187_+	replication P family protein	NA	NA	NA	NA
SOP98556.1\|2427183_2427480_+	hypothetical protein	A0A2D1GNQ4	Pseudomonas_phage	5.6e-42	84.4
SOP98558.1\|2427476_2427908_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	4.2e-54	74.1
SOP98560.1\|2427904_2429185_+\|integrase	integrase	A0A2D1GND4	Pseudomonas_phage	7.7e-221	86.4
SOP98562.1\|2429201_2429507_+	hypothetical protein	NA	NA	NA	NA
SOP98564.1\|2429503_2429824_+	Prophage PssSM-03, Orf37	A0A2D1GNG3	Pseudomonas_phage	2.2e-39	78.3
SOP98566.1\|2429826_2430210_+	hypothetical protein	A0A1W6JTD2	Pseudomonas_phage	5.2e-32	50.8
SOP98567.1\|2430361_2430637_+	hypothetical protein	NA	NA	NA	NA
SOP98569.1\|2430989_2431418_+	hypothetical protein	NA	NA	NA	NA
SOP98571.1\|2431512_2431884_+	putative membrane protein	A0A059VK40	Pseudomonas_phage	3.4e-44	77.2
SOP98573.1\|2431883_2432222_+	Prophage PssSM-02, putative lipoprotein	A0A059VJW1	Pseudomonas_phage	2.6e-27	73.4
SOP98575.1\|2432262_2432712_-	hypothetical protein	NA	NA	NA	NA
SOP98577.1\|2432858_2433089_+	hypothetical protein	A0A1S6UB66	Serratia_phage	1.7e-17	63.4
SOP98579.1\|2433161_2433431_-	hypothetical protein	NA	NA	NA	NA
SOP98581.1\|2433561_2433912_+	hypothetical protein	NA	NA	NA	NA
SOP98583.1\|2433962_2434142_+	hypothetical protein	NA	NA	NA	NA
SOP98585.1\|2434132_2434528_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	2.8e-57	75.2
SOP98586.1\|2434695_2435181_+\|terminase	terminase	A0A2D1GNP3	Pseudomonas_phage	1.2e-78	90.7
SOP98587.1\|2435181_2436915_+\|terminase	putative terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	91.0
SOP98588.1\|2436911_2437076_+	putative membrane protein	Q9MCB1	Pseudomonas_phage	5.5e-07	61.5
SOP98589.1\|2437068_2438379_+	histone H1	A0A1V0E8B9	Vibrio_phage	5.4e-137	55.8
SOP98590.1\|2438382_2439246_+	peptidase	A0A1V0E8B8	Vibrio_phage	2.0e-92	62.5
SOP98592.1\|2439242_2440436_+\|capsid	capsid protein	H2BDB0	Pseudomonas_virus	8.9e-139	67.4
SOP98593.1\|2440486_2440903_+	hypothetical protein	NA	NA	NA	NA
SOP98595.1\|2440906_2441383_+	hypothetical protein	G3ENA1	Psychrobacter_phage	2.7e-14	38.1
SOP98597.1\|2441382_2441721_+\|head,tail	head-tail adaptor protein	A0A1J0GUY4	Halomonas_phage	4.8e-29	60.9
SOP98598.1\|2441713_2442199_+	hypothetical protein	A0A0U3TGT7	Pseudomonas_phage	1.9e-55	67.3
SOP98600.1\|2442198_2442567_+	hypothetical protein	Q9MCA6	Pseudomonas_phage	8.5e-40	65.0
SOP98602.1\|2442630_2443134_+	hypothetical protein	A0A0U4ISC1	Pseudomonas_phage	1.9e-50	61.0
SOP98604.1\|2443143_2443581_+\|tail	phage tail assembly protein	Q9MCA4	Pseudomonas_phage	7.2e-38	66.7
SOP98606.1\|2443831_2446402_+\|tail	tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	2.2e-158	45.3
SOP98608.1\|2446401_2446746_+\|tail	phage minor tail protein	A0A2D1GNJ1	Pseudomonas_phage	8.8e-31	53.5
SOP98610.1\|2446965_2447196_-	hypothetical protein	NA	NA	NA	NA
SOP98612.1\|2447688_2448387_+\|tail	tail protein	A0A2D1GNF3	Pseudomonas_phage	5.6e-109	81.4
SOP98614.1\|2448389_2449172_+	peptidase P60	A0A2D1GNP8	Pseudomonas_phage	2.1e-120	75.0
SOP98616.1\|2449168_2449756_+	hypothetical protein	A0A2D1GNM2	Pseudomonas_phage	5.7e-70	69.4
SOP98618.1\|2449760_2450153_-	hypothetical protein	NA	NA	NA	NA
SOP98619.1\|2450277_2454975_+	host specificity protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	49.5
SOP98621.1\|2454971_2455292_+	hypothetical protein	NA	NA	NA	NA
SOP98623.1\|2455291_2455978_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	9.3e-40	39.5
SOP98625.1\|2456003_2457107_+\|tail	tail fiber domain protein	A0A059VJZ6	Pseudomonas_phage	1.6e-153	75.1
SOP98627.1\|2457106_2457421_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	1.4e-19	49.5
SOP98629.1\|2457434_2457803_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	8.5e-40	74.8
SOP98630.1\|2457818_2457992_-	putative secreted protein	NA	NA	NA	NA
SOP98632.1\|2458098_2458632_+	Prophage PssSM-02, lytic enzyme	A0A059VA40	Pseudomonas_phage	1.6e-87	91.0
SOP98634.1\|2458628_2459159_+	putative membrane protein	A0A059VF51	Pseudomonas_phage	9.7e-61	83.3
SOP98636.1\|2459176_2459395_+	hypothetical protein	NA	NA	NA	NA
SOP98638.1\|2459391_2460636_+	hypothetical protein	A0A059VA35	Pseudomonas_phage	3.0e-206	86.5
2461794:2461847	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3342420 : 3348095

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOP99968.1\|3342420_3343509_+	Molybdenum import ATP-binding protein ModC	G9BWD6	Planktothrix_phage	2.6e-20	31.3
SOP99971.1\|3343598_3344669_+	DNA topoisomerase	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	1.3e-43	33.7
SOP99973.1\|3345104_3345278_+	hypothetical protein	NA	NA	NA	NA
SOP99975.1\|3345655_3346081_+	hypothetical protein	NA	NA	NA	NA
SOP99977.1\|3346162_3346327_-	hypothetical protein	A0A059VA35	Pseudomonas_phage	2.2e-11	70.4
SOP99979.1\|3346416_3346563_-	hypothetical protein	A0A059VA35	Pseudomonas_phage	9.8e-08	78.4
SOP99981.1\|3346581_3347343_+	hypothetical protein	A0A2H4J6P1	uncultured_Caudovirales_phage	1.3e-53	50.6
SOP99983.1\|3347339_3347702_+	hypothetical protein	NA	NA	NA	NA
SOP99985.1\|3347783_3348095_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	8.0e-23	55.3

DBSCAN-SWA_3

3744414 : 3752158

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOQ00680.1\|3744414_3745716_-	Citrate-proton symporter	Q6JIH2	Burkholderia_virus	8.2e-61	36.5
SOQ00682.1\|3745950_3746343_+	tusD-like sulfurtransferase	A0A2H4JA39	uncultured_Caudovirales_phage	1.8e-56	81.5
SOQ00685.1\|3746344_3746707_+	hypothetical protein	A0A2H4J8C0	uncultured_Caudovirales_phage	8.7e-37	61.7
SOQ00687.1\|3746706_3747006_+	DsrH like protein	A0A2H4JG28	uncultured_Caudovirales_phage	3.2e-29	62.6
SOQ00691.1\|3747002_3747338_+	DsrC-like protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.0e-44	79.3
SOQ00693.1\|3747334_3748336_+	hypothetical protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.0e-164	84.5
SOQ00695.1\|3748432_3749431_+	Glutathionyl-hydroquinone reductase YqjG	NA	NA	NA	NA
SOQ00697.1\|3749482_3750877_-	Siroheme synthase	NA	NA	NA	NA
SOQ00700.1\|3750877_3752158_-\|tRNA	Serine-tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8

DBSCAN-SWA_4

5376312 : 5410000

Pseudomonas_phage(57.69%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOQ03463.1\|5376312_5377524_-\|tRNA	Tyrosine-tRNA ligase	NA	NA	NA	NA
SOQ03465.1\|5377725_5379153_+	peptidase M23	A8ATH6	Listeria_phage	4.2e-18	44.7
SOQ03467.1\|5379156_5380251_+	Anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
SOQ03469.1\|5380313_5380664_-	Iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
SOQ03471.1\|5380872_5381907_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
SOQ03474.1\|5382040_5382469_+	membrane protein	NA	NA	NA	NA
SOQ03475.1\|5382554_5383469_+	hypothetical protein	NA	NA	NA	NA
SOQ03478.1\|5383525_5384302_+	short-chain dehydrogenase	NA	NA	NA	NA
SOQ03480.1\|5384405_5384744_+	HIT family hydrolase	NA	NA	NA	NA
SOQ03482.1\|5384865_5385513_+	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
SOQ03483.1\|5385582_5386377_-	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA
SOQ03485.1\|5386619_5387042_-	peroxiredoxin	NA	NA	NA	NA
SOQ03487.1\|5387243_5387888_+	Cyclic AMP receptor-like protein	NA	NA	NA	NA
SOQ03489.1\|5387899_5388595_-	hypothetical protein	NA	NA	NA	NA
SOQ03491.1\|5388629_5389466_-	Indole-3-glycerol phosphate synthase	A0A0P0IR83	Acinetobacter_phage	2.0e-68	56.2
SOQ03493.1\|5389462_5390524_-	Anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.2e-111	58.0
SOQ03495.1\|5390533_5391133_-	Anthranilate synthase component 2	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
SOQ03497.1\|5391544_5392057_-	hypothetical protein	B5TK84	Pseudomonas_phage	1.4e-27	47.8
SOQ03499.1\|5392053_5392599_-	Glycoside hydrolase, family 19	A0A2H4JHX4	uncultured_Caudovirales_phage	2.0e-69	73.3
SOQ03501.1\|5392769_5393246_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
SOQ03503.1\|5393245_5395105_-\|tail	tail fiber protein	A0A077K818	Ralstonia_phage	1.3e-38	53.7
SOQ03505.1\|5395115_5395715_-\|tail	phage tail protein	B5TK76	Pseudomonas_phage	3.7e-85	72.4
SOQ03507.1\|5395702_5396743_-\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	1.6e-131	69.8
SOQ03509.1\|5396732_5397131_-	hypothetical protein	B5TK74	Pseudomonas_phage	4.4e-42	62.9
SOQ03511.1\|5397127_5397640_-	phage assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
SOQ03513.1\|5397636_5398764_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.7e-113	60.2
SOQ03515.1\|5398767_5400192_-	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	3.4e-108	45.3
SOQ03517.1\|5400188_5402348_-\|tail	tail tape measure protein	U5P420	Shigella_phage	1.3e-71	40.2
SOQ03519.1\|5402372_5402468_+	hypothetical protein	NA	NA	NA	NA
SOQ03521.1\|5402478_5402775_-	ArsR family transcriptional regulator	B5TK69	Pseudomonas_phage	4.7e-33	74.0
SOQ03523.1\|5402771_5403119_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	5.0e-42	70.4
SOQ03524.1\|5403179_5404676_-\|tail	bacteriophage Mu tail sheath	B5TK67	Pseudomonas_phage	2.2e-235	80.7
SOQ03526.1\|5404694_5404883_-	hypothetical protein	B5TK66	Pseudomonas_phage	3.1e-14	73.5
SOQ03528.1\|5404879_5405470_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.4e-52	52.6
SOQ03530.1\|5405515_5405854_-	putative membrane protein	A0A059VJW1	Pseudomonas_phage	1.2e-19	59.2
SOQ03531.1\|5405834_5406224_-	chemotaxis protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
SOQ03533.1\|5406346_5407519_-	glycoside hydrolase	NA	NA	NA	NA
SOQ03535.1\|5407530_5407716_-	hypothetical protein	B5TK59	Pseudomonas_phage	1.3e-12	89.5
SOQ03537.1\|5407988_5408432_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	4.6e-24	45.8
SOQ03539.1\|5408585_5409233_+	repressor	A0A0M4QWY1	Salmonella_phage	3.8e-51	47.6
SOQ03541.1\|5409387_5409636_+	hypothetical protein	NA	NA	NA	NA
SOQ03543.1\|5409733_5410000_+	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-16	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LT962480

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection