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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LT962481 Pseudomonas syringae pv. syringae isolate CFBP2118 genome assembly, chromosome: 1 3 crisprs cas3,csa3,DEDDh,DinG,PD-DExK 1 8 9 0

Results visualization

1. LT962481
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT962481_1 1611398-1611499 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT962481_2 4298381-4298517 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT962481_6 5380612-5380705 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
LT962481_3 3.3|4301417|25|LT962481|CRISPRCasFinder 4301417-4301441 25 LT962481.1 4301705-4301729 2 0.92

1. spacer 3.3|4301417|25|LT962481|CRISPRCasFinder matches to position: 4301705-4301729, mismatch: 2, identity: 0.92

gcgagctgttttcctgtgcggtttg	CRISPR spacer
gcgagctgttttcctgcgcggtctg	Protospacer
****************.*****.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LT962481_3 3.2|4301369|25|LT962481|CRISPRCasFinder 4301369-4301393 25 NC_017536 Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence 116239-116263 3 0.88
LT962481_3 3.2|4301369|25|LT962481|CRISPRCasFinder 4301369-4301393 25 NC_015689 Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence 116241-116265 3 0.88
LT962481_3 3.2|4301369|25|LT962481|CRISPRCasFinder 4301369-4301393 25 NC_012854 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence 47795-47819 4 0.84
LT962481_3 3.3|4301417|25|LT962481|CRISPRCasFinder 4301417-4301441 25 CP011076 Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence 423009-423033 4 0.84
LT962481_5 5.2|4301801|25|LT962481|CRISPRCasFinder 4301801-4301825 25 NC_016585 Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence 184614-184638 4 0.84
LT962481_5 5.3|4301849|25|LT962481|CRISPRCasFinder 4301849-4301873 25 NZ_CP032676 Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence 458617-458641 4 0.84
LT962481_5 5.4|4301897|25|LT962481|CRISPRCasFinder 4301897-4301921 25 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 1496824-1496848 4 0.84
LT962481_5 5.4|4301897|25|LT962481|CRISPRCasFinder 4301897-4301921 25 MN234167 Mycobacterium phage Vanisoa, complete genome 45033-45057 4 0.84
LT962481_5 5.5|4301945|25|LT962481|CRISPRCasFinder 4301945-4301969 25 NC_041931 Arthrobacter phage Jawnski, complete genome 13244-13268 4 0.84
LT962481_5 5.5|4301945|25|LT962481|CRISPRCasFinder 4301945-4301969 25 NC_042014 Arthrobacter phage Piccoletto, complete genome 13237-13261 4 0.84
LT962481_5 5.5|4301945|25|LT962481|CRISPRCasFinder 4301945-4301969 25 MF324907 Arthrobacter phage Beans, complete genome 13249-13273 4 0.84
LT962481_5 5.8|4302089|25|LT962481|CRISPRCasFinder 4302089-4302113 25 NZ_LR134463 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence 33448-33472 4 0.84
LT962481_5 5.8|4302089|25|LT962481|CRISPRCasFinder 4302089-4302113 25 MK494116 Mycobacterium phage Dulcie, complete genome 32050-32074 4 0.84
LT962481_5 5.9|4302137|25|LT962481|CRISPRCasFinder 4302137-4302161 25 NC_022540 Xanthomonas citri pv. fuscans plasmid plb, complete sequence 1878-1902 4 0.84
LT962481_5 5.9|4302137|25|LT962481|CRISPRCasFinder 4302137-4302161 25 NZ_CP021009 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence 6284-6308 4 0.84
LT962481_5 5.9|4302137|25|LT962481|CRISPRCasFinder 4302137-4302161 25 NZ_CP021009 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence 25976-26000 4 0.84
LT962481_5 5.9|4302137|25|LT962481|CRISPRCasFinder 4302137-4302161 25 NZ_CP020995 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence 13385-13409 4 0.84
LT962481_5 5.9|4302137|25|LT962481|CRISPRCasFinder 4302137-4302161 25 NZ_CP020995 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence 32867-32891 4 0.84
LT962481_5 5.9|4302137|25|LT962481|CRISPRCasFinder 4302137-4302161 25 NZ_CP021005 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence 3850-3874 4 0.84
LT962481_5 5.9|4302137|25|LT962481|CRISPRCasFinder 4302137-4302161 25 NZ_CP021005 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence 23368-23392 4 0.84

1. spacer 3.2|4301369|25|LT962481|CRISPRCasFinder matches to NC_017536 (Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence) position: , mismatch: 3, identity: 0.88

gcgagctggcaaagccggcggtgga	CRISPR spacer
tcgagctcgcaaagccggcggcgga	Protospacer
 ****** *************.***

2. spacer 3.2|4301369|25|LT962481|CRISPRCasFinder matches to NC_015689 (Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence) position: , mismatch: 3, identity: 0.88

gcgagctggcaaagccggcggtgga	CRISPR spacer
tcgagctcgcaaagccggcggcgga	Protospacer
 ****** *************.***

3. spacer 3.2|4301369|25|LT962481|CRISPRCasFinder matches to NC_012854 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagctggcaaagccggcggtgga	CRISPR spacer
gcgatctggcaaagcgggcggtgtg	Protospacer
**** ********** ******* .

4. spacer 3.3|4301417|25|LT962481|CRISPRCasFinder matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagctgttttcctgtgcggtttg	CRISPR spacer
gcgagctgttttcctttgaggttgt	Protospacer
*************** ** ****  

5. spacer 5.2|4301801|25|LT962481|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 4, identity: 0.84

aggaactggagtagcccgcagtcga	CRISPR spacer
gggaactgatgtagcccgcagtcgc	Protospacer
.*******. ************** 

6. spacer 5.3|4301849|25|LT962481|CRISPRCasFinder matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 4, identity: 0.84

gatcactgcgctcctgtgccgtctg	CRISPR spacer
catcactgcggtcctgtgccgtccc	Protospacer
 ********* ************. 

7. spacer 5.4|4301897|25|LT962481|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gtatgcttttgaagcccgccgtctg	CRISPR spacer
gtaggcgtttgaagcccgccgtcaa	Protospacer
*** ** **************** .

8. spacer 5.4|4301897|25|LT962481|CRISPRCasFinder matches to MN234167 (Mycobacterium phage Vanisoa, complete genome) position: , mismatch: 4, identity: 0.84

gtatgcttttgaagcccgccgtctg	CRISPR spacer
tcatgcccttgaagcccgccgtctg	Protospacer
 .****..*****************

9. spacer 5.5|4301945|25|LT962481|CRISPRCasFinder matches to NC_041931 (Arthrobacter phage Jawnski, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgtttgaacctgccgttga	CRISPR spacer
gcggactgcttgaacctgccgtttt	Protospacer
***.****.**************  

10. spacer 5.5|4301945|25|LT962481|CRISPRCasFinder matches to NC_042014 (Arthrobacter phage Piccoletto, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgtttgaacctgccgttga	CRISPR spacer
gcggactgcttgaacctgccgtttt	Protospacer
***.****.**************  

11. spacer 5.5|4301945|25|LT962481|CRISPRCasFinder matches to MF324907 (Arthrobacter phage Beans, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgtttgaacctgccgttga	CRISPR spacer
gcggactgcttgaacctgccgtttt	Protospacer
***.****.**************  

12. spacer 5.8|4302089|25|LT962481|CRISPRCasFinder matches to NZ_LR134463 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence) position: , mismatch: 4, identity: 0.84

gcgaactgcttgagcctgaggtccc	CRISPR spacer
gcgagctgcttgagcatgaggtcga	Protospacer
****.********** *******  

13. spacer 5.8|4302089|25|LT962481|CRISPRCasFinder matches to MK494116 (Mycobacterium phage Dulcie, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgcttgagcctgaggtccc	CRISPR spacer
tcgaactgcttgacccagaggtcca	Protospacer
 ************ ** ******* 

14. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NC_022540 (Xanthomonas citri pv. fuscans plasmid plb, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***  

15. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021009 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***  

16. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021009 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***  

17. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP020995 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***  

18. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP020995 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***  

19. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021005 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***  

20. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021005 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 305771 : 348158 44 Bacillus_phage(75.0%) transposase NA
DBSCAN-SWA_2 559604 : 623421 65 Pseudomonas_phage(48.48%) tRNA,tail,plate,integrase attL 547410:547425|attR 607990:608005
DBSCAN-SWA_3 1124679 : 1132604 10 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 1646257 : 1649926 6 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_5 2319186 : 2326928 9 uncultured_Caudovirales_phage(71.43%) tRNA NA
DBSCAN-SWA_6 2720943 : 2729760 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_7 4122878 : 4211144 57 Bacillus_virus(13.33%) tRNA,protease,transposase NA
DBSCAN-SWA_8 5472929 : 5485713 8 Bacillus_phage(66.67%) transposase NA
DBSCAN-SWA_9 5735903 : 5784439 47 Bacillus_phage(22.22%) tRNA,protease,transposase,integrase attL 5773783:5773827|attR 5778770:5778814
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage