CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT962481	Pseudomonas syringae pv. syringae isolate CFBP2118 genome assembly, chromosome: 1	3 crisprs	cas3,csa3,DEDDh,DinG,PD-DExK	1	8	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LT962481_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962481_1

1611398-1611499

Unclear

Consensus_repeat	Method
AGAACGGCATACCCACGCGGAGC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LT962481_1

>merge|LT962481|1|1611398-1611499|CRISPRCasFinder
AGAACGGCATACCCACGCGGAGCATGGGTACGATAGTCAGAGAGCTGTCCGCGCACTCAAGGCAGGAGGCAGAGCGTCCAGAACGGCATACCCATGCGGAGC

>LT962481|1|1|1611398-1611499|CRISPRCasFinder
AGAACGGCATACCCACGCGGAGC	ATGGGTACGATAGTCAGAGAGCTGTCCGCGCACTCAAGGCAGGAGGCAGAGCGTCC
AGAACGGCATACCCATGCGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
LT962481.1\|SOP97340.1\|1614176_1614356_-\|hypothetical-protein	unknown	unknown	unknown
LT962481.1\|SOP97342.1\|1614671_1615508_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
LT962481.1\|SOP97331.1\|1609574_1610912_+\|RNA-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
LT962481.1\|SOP97337.1\|1612623_1613352_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273922
LT962481.1\|SOP97317.1\|1601924_1602278_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380097
LT962481.1\|SOP97346.1\|1616354_1616756_+\|membrane-protein	unknown	unknown	gnl\|CDD\|378319
LT962481.1\|SOP97329.1\|1608173_1609424_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|236532
LT962481.1\|SOP97321.1\|1603446_1604346_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
LT962481.1\|SOP97319.1\|1602557_1603358_-\|NAD(P)H-dehydrogenase	unknown	unknown	gnl\|CDD\|225158
LT962481.1\|SOP97326.1\|1604898_1607271_-\|membrane-protein	unknown	unknown	gnl\|CDD\|274514
LT962481.1\|SOP97348.1\|1616833_1617214_-\|hypothetical-protein	unknown	unknown	unknown
LT962481.1\|SOP97313.1\|1599580_1600828_+\|Transcription-regulatory-protein-OpdE	unknown	unknown	gnl\|CDD\|225371
LT962481.1\|SOP97350.1\|1617426_1617618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283241
LT962481.1\|SOP97315.1\|1600902_1601868_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223999
LT962481.1\|SOP97352.1\|1617841_1618807_+\|ribonuclease-BN	unknown	unknown	gnl\|CDD\|224214
LT962481.1\|SOP97335.1\|1611690_1612554_-\|hypothetical-protein	unknown	unknown	unknown
LT962481.1\|SOP97338.1\|1613496_1614009_-\|hypothetical-protein	unknown	unknown	unknown
LT962481.1\|SOP97323.1\|1604365_1604779_-\|hypothetical-protein	unknown	unknown	unknown
LT962481.1\|SOP97328.1\|1607487_1608177_+\|Transcriptional-regulatory-protein-CpxR	unknown	unknown	gnl\|CDD\|223816
LT962481.1\|SOP97344.1\|1615577_1616210_-\|DSBA-oxidoreductase	unknown	unknown	gnl\|CDD\|239322

Protein	Function_ID	Function_description	E-value
LT962481.1\|SOP97342.1\|1614671_1615508_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.89195e-109
LT962481.1\|SOP97331.1\|1609574_1610912_+\|RNA-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.82325e-136
LT962481.1\|SOP97337.1\|1612623_1613352_-\|hypothetical-protein	gnl\|CDD\|273922	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.	6.73715e-46
LT962481.1\|SOP97317.1\|1601924_1602278_-\|hypothetical-protein	gnl\|CDD\|380097	pfam18050, Cyclophil_like2, Cyclophilin-like family. This entry represents a family of cyclophilin-like proteins found in a range of bacterial species.	1.93344e-42
LT962481.1\|SOP97346.1\|1616354_1616756_+\|membrane-protein	gnl\|CDD\|378319	pfam09945, DUF2177, Predicted membrane protein (DUF2177). This domain, found in various hypothetical bacterial proteins, has no known function.	9.73065e-44
LT962481.1\|SOP97329.1\|1608173_1609424_+\|histidine-kinase	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	1.00056e-50
LT962481.1\|SOP97321.1\|1603446_1604346_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.16836e-96
LT962481.1\|SOP97319.1\|1602557_1603358_-\|NAD(P)H-dehydrogenase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.47261e-62
LT962481.1\|SOP97326.1\|1604898_1607271_-\|membrane-protein	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
LT962481.1\|SOP97313.1\|1599580_1600828_+\|Transcription-regulatory-protein-OpdE	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.05128e-102
LT962481.1\|SOP97350.1\|1617426_1617618_+\|hypothetical-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96802e-09
LT962481.1\|SOP97315.1\|1600902_1601868_+\|hypothetical-protein	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	5.14055e-45
LT962481.1\|SOP97352.1\|1617841_1618807_+\|ribonuclease-BN	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	8.10843e-66
LT962481.1\|SOP97344.1\|1615577_1616210_-\|DSBA-oxidoreductase	gnl\|CDD\|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	7.203e-44
LT962481.1\|SOP97328.1\|1607487_1608177_+\|Transcriptional-regulatory-protein-CpxR	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.70776e-76

>LT962481.1|SOP97331.1|1609574_1610912_+|RNA-helicase
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKVAAKGPTKRKTVNRPKSDLVSQDGMAPLKKRSTPAPAAE
>LT962481.1|SOP97329.1|1608173_1609424_+|histidine-kinase
MRPNRLFWKLFLAFWLATSLTFMVGAGLFMFTQSGRGDPSFSTVLDNEVRILQRSGIAAGRALLDTWQPEGQGRVGLYDNQGLLLAGEALENPRFELAVHTREGALVHIRSTQRPNHDDQPSHLNPLITGTVMSALFSWFLSSYLVAPLMKLREAMGKVARGRFDTRVKPDMGRRRDEIVDLAEDCDRMANQLKVMADSQQQLLHDISHELRSPLTRMSAAIGLLRQEPSQLDMLERIERESERMDSLIEELLTLARMQSDVESLTREKVDVISLLAAIVEDAEFEAGLKQCRVRLQAPGSFVAQVDSELLYRAFENVIRNAVRHTAVGSDVVVVANVQAQPLCLMVNVIDQGPGVDEACLQRIFQPFERGPENAAQGFGLGLAIALRAIEMHGGQIAARNRPGGGLVVDVLLPVS
>LT962481.1|SOP97328.1|1607487_1608177_+|Transcriptional-regulatory-protein-CpxR
MTSVLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMMPRISGIEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAVSVVDAVRDVIQAGELMLWPGKREARWQGATLELTGNEFCLLEELARHAGQLVSKQNLSMNALGRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYMLITP
>LT962481.1|SOP97326.1|1604898_1607271_-|membrane-protein
MISSRLLLSFCLLISVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLADASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTDDLMKGLKQSGLSEGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHINVVGNTVFSDEQLADQFQLKTSNWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMDINSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRKVMTDSTNLITRRLGNDGYTFANVNGVPKANDADHTVDISFVVDPGKRAYANRINFRGNTKTADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVEEQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFTPDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRDTLDPGSYSADEIYDFIEREGDAFTNLKASVGWSESTLNKGVLATRGHSQSLTLTSTVPGSDLQFYKLDYNGQTFLPLSDTTSLRLHTKLGYGNGYGDTDGLPFYENYTAGGQATVRGFKDGTLGPRNTPATGTYASQGQIYYSDRDTEALGGNILISGGMEYLFPMPFVKDQKSLRTSLFWDFGTVYADKCYLTTTQNCGNINIDQMASSVGVGVTWYSPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF
>LT962481.1|SOP97323.1|1604365_1604779_-|hypothetical-protein
MSREVRQITPDVQEIIQHALRSLLGKGFVIALFGSEDATGAMHYHLRIDHDATGLGIEHHDHVEDGFIDDIFMLATRMKAMLKQRETLSRMHGGSQATGQVRLLTWITEDNSQTVVQTAEAAGRECLSALRERRLRA
>LT962481.1|SOP97321.1|1603446_1604346_+|LysR-family-transcriptional-regulator
MNNTLRRIDLNLLVTLDALLSEQNVTRAAHRLNLTQPTVSLQLGRLRQVLEDPLLLPGPRGMTPTARAEELREPLRQALAALESALLPSRDFDPATADHTWRVAASDYATIALIWPSLGRLRNSAPGTRLAMLNKHPVSLAADLESGRLDLALHTRDEAPPKLRQRSLIHERYVLAARHDHPDLAQPVSLTRFCELEHAVMSPNGGGFAGSTDQALAALGLSRRVVLSAPHFGSLVSALTCSDLVAVVPERLVRNQPTLVVQEPPLSIPGFEMLMLWPERLHRDPAHRWLRELMVAAID
>LT962481.1|SOP97319.1|1602557_1603358_-|NAD(P)H-dehydrogenase
MNVLIVYAHPEPRSLNGSLKDFAVDHLQNNGHQVQVSDLYQIGWKAIIDANDAPGLENNSRFDPALESQRVFAAGIQPPDIEAEQARLLWADAVIFQFPLWWFSMPAIMKGWIERVYACGFAYGVGEHSDQHWGDRYGEGTLAGKRAMLTVTMGGWESHYSERGVNGALNDVLFPIQHGILFYPGFDVLAPFPVYRAGKVDSATFARICADYGNRLDTLFTLEPLPFRRQNDGDYEIPALTLRPELAAGRQGLGIHLRDEDGPADL
>LT962481.1|SOP97317.1|1601924_1602278_-|hypothetical-protein
MNVRMYAGDKVVMLHLDDSETARDFVSLLPVELTLEDYAATEKISMLPRKLNVTGAPAGVTPIEGDIAYYAPWGNLAIFHKGFKYSPGLIRLGRVESGIEVIRQPGTVAVRFEVATD
>LT962481.1|SOP97315.1|1600902_1601868_+|hypothetical-protein
MSHGADNFYTSDKVVAQKVLFNNQYKMKVAGNLFIPKGSNPNVKAPAIIVGHPMGAVKEQSANLYAQKLAEQGFVTLSLDLSFWGGSEGQPRNAVSPDLYAEDFSAAVDFLGTQTFVDKKRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYDMGAANRNGLKHSQTLAQRKKIIEQAALQRDVEYSGGDTAYTSGTVHKLTDTSGPIEREFYDFYRTPRGEFTPEGQSPDLTTHPTLTSNIKFMNFYPFNDIATISPRPMLFIAGSKAHSLEFSEEAYKLAGQPKQLIIVPGAGHVDLYDRVDLIPFDKLGEFFRNNLK
>LT962481.1|SOP97313.1|1599580_1600828_+|Transcription-regulatory-protein-OpdE
MQAFDSTLKQSEITTHPPAWGAVFSMALCVVVLIASEFMPVSLLTPIAQDLGISQGQAGQAISISGFFAVLTSLLNTPLTGHLDRKPVLLGFSLLLLVSGVIVTLASNGWLFMTGRALLGIAIGGFWSMSTATVMKLVPKQSVAKGLALVNGGNALAATVAAPLGSFMGQYIGWRGAFFLVIPLAALAFAWQWLSLPAMRSQPHNRARNPFRLLRNPQVAVGMSSILLLFMGQFAVFTYLRPFLEEITGVSVNTLSLMLLALGASGLVGTYLIGRLLHKGLYACLIAIPLLMAVLAVALTGLGHSPQAVAIVLAVWGLIATPAPVAWGLWLSRTLPDDAEAGGGLMVATIQLAITAGAGIGGALFDRLGWWSPFAFGGVLLACSAALAWTARDDASLQEKNTGQGRADKRGSISQ
>LT962481.1|SOP97335.1|1611690_1612554_-|hypothetical-protein
MQSLFKAFVTLLMTVALLAGCNQVGLAYRNLDVIIPWTLSDYLDMNSEQKGWLDVRLKQHLSWHCSTQLPEYLTWLDKLEDMVKTDQVTYEGLQARTSEAKEAIAKISKEITPSAVELLSRFDDKQVQEMQESFAKDQRKRENKYLDQPLERQIAERADRMQKRVTPWVGKLNQAQKDRIQAWSASLGEQNKAWIENRTRWQNLFLATVQQRQASDFPQRIAALLQDRETFWTPEYRKAYDQTEKAAISLIVDITALSTPEQRAKLLSRIADMRKDFTDLDCLKSQK
>LT962481.1|SOP97337.1|1612623_1613352_-|hypothetical-protein
MLSHRLHVLSFSAMLVCQSVSAQVLERDLGDFDLKLATTPTRSMAQGLVTPTGGSGSFHGGMDLTHESGFYFGQWAPNMGLASDTGMELDSYMGFKKPFDNTLGYELGMIRYSYPDTSQIDSHEFYAGLRMRDSRIGAAFSNDVGTRDSTVFVDLGAIEQLGVGVRMQYANHQFDTPQSAADGGLINGFNDWSLNLSRPWLGIDMNLIYSGSSLSGGDCSVYSGHNARCDGTFTLKAVRSFF
>LT962481.1|SOP97338.1|1613496_1614009_-|hypothetical-protein
MKNWMLFGALVYLGGCASHHCENGPNDSQLTDSPCRAEHLLYQNDMLQAKLLISEDNRENYELAEAMLRRAALDDASGEAEFYQAVLLIRQQADQKQIIDLLQTAAKHKHPLAIALLSQQLSVSDPKLAERYQSEYAQLDVAKSGYPSFEQALVVIRGLIIPSARTTAAN
>LT962481.1|SOP97340.1|1614176_1614356_-|hypothetical-protein
MRIKASHSKAKPAPAVETSDSINAQIAAFLKSGGEIQQIAKGVSGQTFAPSKQINLGKK
>LT962481.1|SOP97342.1|1614671_1615508_+|GntR-family-transcriptional-regulator
MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDKLLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVYLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEVFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSDPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIELV
>LT962481.1|SOP97344.1|1615577_1616210_-|DSBA-oxidoreductase
MNTVGPLKIDVWSDYVCPFCYLQLAVLEQLQQTYGERLEFNWHAFELRPDPLALLDPSADYLRETWSRSVLPMADRRQVMMKMPSVQPRSRKVLEAAVFARNAGGFEAFHKEAYRAFFEKGLDISETHTLLELATTTGLDRQAMEQALNAGHFEKAVLDDRQLAQKLGLRAVPVVLLRRSDEALEDARVFNGTLPFERLSQEIDALATWA
>LT962481.1|SOP97346.1|1616354_1616756_+|membrane-protein
MKRILIAYFGTLLAFLILDGLWLGVLMGPTYREWLGPLMLETPVLGPAIAFYLLYGAGVVFFGVMPALRAQRLSHATLCSGLLGLIAYGTYDLTNWATLQGWPAQLALVDHAWGTVVSALAGTAGYLAVRRFA
>LT962481.1|SOP97348.1|1616833_1617214_-|hypothetical-protein
MKLDKKLAIARRNQDLGGAVLGVNNTHFAVLDHKRNIWWFDLPVPRLQVGQYEWLHLLLHTPETDQLLHLKVTTVFMRDHMEGLEVRNADKRKPTVSLELSADKDSFLKDMRPKGSNLSFAGFLQK
>LT962481.1|SOP97350.1|1617426_1617618_+|hypothetical-protein
MSSTSDKAKGMANEAVGNVKQAVGKATDNDKLQAEGKVQELKGEGQQTVGKVKDAIKKGVDKA
>LT962481.1|SOP97352.1|1617841_1618807_+|ribonuclease-BN
MIFPHLRKLKVGKVMVRTVNEFLDDEMSTYASALAYQMLFSLFPFLLFLIALIGFLHLPDFFSWLRLQSEFLLPPQALEQVNPVIDQLQQSKGGLLSIGIVIALWTASAGVRLMMSAMNAAYDVVEGRPIWKRLPLSILYTVGIAGMLLAAAAFMVLGPQVMNWIAAQIGMEDFIVTLWTILRWPAIIILLMVAVALIYYVMPDVKQEFRFITPGSVLAVVVWIVASLAFGFYVKTFADYNAMYGSIGAIIVLLLYFYISAAVLLLGAEMNAVIEHMSAEGKDAGEKEAGDGGEESSETVKQHVSGLGRDHSVPLQKADEA

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Crispr_ID: LT962481_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962481_2

4298381-4298517

Orphan

Consensus_repeat	Method
GCTCCGCGTCACACAGAGGTTCTGTGATGTCAGGTGGATTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962481_2

>merge|LT962481|2|4298381-4298517|CRISPRCasFinder
GCTCCGCGTCACACAGAGGTTCTGTGATGTCAGGTGGATTGGCGTTCGGGCCCGACTATCGTTCCCACGCTCCGCGTGGTAATGCCGTTCGTGACGCTCCGCGTCACACAGCGGTTCTGTGATGTCAGGTGGATTGG

>LT962481|2|2|4298381-4298517|CRISPRCasFinder
GCTCCGCGTCACACAGAGGTTCTGTGATGTCAGGTGGATTGG	CGTTCGGGCCCGACTATCGTTCCCACGCTCCGCGTGGTAATGCCGTTCGTGAC
GCTCCGCGTCACACAGCGGTTCTGTGATGTCAGGTGGATTGG

Protein	Signature genes	Signature genes Name	Protein_function
LT962481.1\|SOQ01793.1\|4305011_4305731_-\|putative-transcriptional-regulator-of-2-aminoethylphosphonate-degradation-operon	unknown	unknown	gnl\|CDD\|132380
LT962481.1\|SOQ01805.1\|4310751_4311405_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
LT962481.1\|SOQ01803.1\|4309662_4310652_+\|Spermidine/putrescine-import-ATP-binding-protein-PotA	unknown	unknown	gnl\|CDD\|226361
LT962481.1\|SOQ01807.1\|4311424_4312387_-\|Quinone-oxidoreductase-PIG3	unknown	unknown	gnl\|CDD\|176180
LT962481.1\|SOQ01795.1\|4306085_4307153_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270267
LT962481.1\|SOQ01798.1\|4308034_4308877_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226616
LT962481.1\|SOQ01771.1\|4290891_4291410_+\|hypothetical-protein	unknown	unknown	unknown
LT962481.1\|SOQ01778.1\|4293315_4294500_-\|patatin	unknown	unknown	gnl\|CDD\|132848
LT962481.1\|SOQ01776.1\|4293037_4293274_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239550
LT962481.1\|SOQ01780.1\|4294532_4295465_-\|Lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235543
LT962481.1\|SOQ01782.1\|4295585_4296326_+\|putative-septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|234730
LT962481.1\|SOQ01785.1\|4297369_4297624_+\|Cell-division-topological-specificity-factor	unknown	unknown	gnl\|CDD\|234718
LT962481.1\|SOQ01791.1\|4300493_4304552_-\|Ice-nucleation-protein	unknown	unknown	unknown
LT962481.1\|SOQ01783.1\|4296557_4297370_+\|Septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
LT962481.1\|SOQ01773.1\|4291399_4292197_+\|dihydrodipicolinate-synthetase	unknown	unknown	gnl\|CDD\|188630
LT962481.1\|SOQ01789.1\|4298952_4300242_+\|putative-M18-family-aminopeptidase-2	unknown	unknown	gnl\|CDD\|235073
LT962481.1\|SOQ01775.1\|4292196_4293054_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379634
LT962481.1\|SOQ01797.1\|4307231_4308038_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224441
LT962481.1\|SOQ01800.1\|4308863_4309661_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
LT962481.1\|SOQ01787.1\|4297714_4298350_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|223638

Protein	Function_ID	Function_description	E-value
LT962481.1\|SOQ01793.1\|4305011_4305731_-\|putative-transcriptional-regulator-of-2-aminoethylphosphonate-degradation-operon	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	2.74565e-82
LT962481.1\|SOQ01803.1\|4309662_4310652_+\|Spermidine/putrescine-import-ATP-binding-protein-PotA	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.14789e-145
LT962481.1\|SOQ01807.1\|4311424_4312387_-\|Quinone-oxidoreductase-PIG3	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	6.52004e-151
LT962481.1\|SOQ01795.1\|4306085_4307153_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270267	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.29243e-58
LT962481.1\|SOQ01798.1\|4308034_4308877_+\|ABC-transporter-permease	gnl\|CDD\|226616	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.03847e-111
LT962481.1\|SOQ01773.1\|4291399_4292197_+\|dihydrodipicolinate-synthetase	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	5.13602e-37
LT962481.1\|SOQ01778.1\|4293315_4294500_-\|patatin	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	2.82509e-39
LT962481.1\|SOQ01776.1\|4293037_4293274_+\|hypothetical-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.48988e-09
LT962481.1\|SOQ01780.1\|4294532_4295465_-\|Lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235543	PRK05646, PRK05646, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
LT962481.1\|SOQ01797.1\|4307231_4308038_+\|hypothetical-protein	gnl\|CDD\|224441	COG1524, COG1524, Uncharacterized proteins of the AP superfamily [General function prediction only].	1.79573e-39
LT962481.1\|SOQ01785.1\|4297369_4297624_+\|Cell-division-topological-specificity-factor	gnl\|CDD\|234718	PRK00296, minE, cell division topological specificity factor MinE; Reviewed.	1.35704e-46
LT962481.1\|SOQ01783.1\|4296557_4297370_+\|Septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.8418e-167
LT962481.1\|SOQ01782.1\|4295585_4296326_+\|putative-septum-site-determining-protein-MinC	gnl\|CDD\|234730	PRK00339, minC, septum site-determining protein MinC.	8.00188e-159
LT962481.1\|SOQ01789.1\|4298952_4300242_+\|putative-M18-family-aminopeptidase-2	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
LT962481.1\|SOQ01775.1\|4292196_4293054_+\|hypothetical-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	6.59427e-20
LT962481.1\|SOQ01805.1\|4310751_4311405_+\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.14371e-56
LT962481.1\|SOQ01800.1\|4308863_4309661_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	3.2364e-59
LT962481.1\|SOQ01787.1\|4297714_4298350_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.57106e-78

>LT962481.1|SOQ01787.1|4297714_4298350_+|Ribosomal-large-subunit-pseudouridine-synthase-A
MPLSNIRIIHQDAAVLVIDKPTLLLSVPGRADDNKDCLITRLQENGYPEARIVHRLDWETSGIILLARDADTHRELSRQFHDRETEKAYTALCWGQPSLDSGSIDLPLRYDPPTKPRHVVDHEGGKHALTFWKVVERHDTYCRVELTPITGRSHQLRVHMLSIGHPLLGDGLYAHPEALAAYPRLCLHASMLSFTHPGTGERMTFECAAPF
>LT962481.1|SOQ01785.1|4297369_4297624_+|Cell-division-topological-specificity-factor
MNIFDFFRDRKKGSTASVAKERLQIIVAHERGQRSTPDYLPALQKELVEVIRKYVNIESDQVQVALESQGSCSILELNITLPDR
>LT962481.1|SOQ01783.1|4296557_4297370_+|Septum-site-determining-protein-MinD
MAKILVVTSGKGGVGKTTTSAAIGTGLALRGHKTVIVDFDVGLRNLDLIMGCERRVVYDFVNVVNGEANLQQALIKDKKIEGLFVLAASQTRDKEALTKEGVEKVLMELKESFEYIVCDSPAGIETGAHLAMYFADEAIVVTNPEVSSVRDSDRMLGLLASKSRRAERGEDPIKEHLLLTRYNPERVSKGEMLGVEDVKEILAVTLLGVIPESQAVLKASNQGVPVILDDQSDAGQAYSDAVDRLLGKTLEHRFLDVHKKGFFERLFGGN
>LT962481.1|SOQ01782.1|4295585_4296326_+|putative-septum-site-determining-protein-MinC
MSQIESQNPEPVFQLKGSMLAITVMELARTNLEALDRQLAAKVAQAPNFFSNTPLILALDKLAPNEGPVDLPGLVRICRQHGLRTLAIRANRIEDIAAAIAVDLPVLPPSGARERVIDPVEAEAPKKIPEKPPEPLIKPTRVITAPVRGGQQIYAQGGDLVVVAPVSPGAELLADGNIHVYGPMRGRALAGIKGDTKARIFCQQLSAELISIAGQYKVSEDLRRDPLWGSPVQISLSGDVLNIIRL
>LT962481.1|SOQ01780.1|4294532_4295465_-|Lipid-A-biosynthesis-lauroyl-acyltransferase
MDRPRLKASFLHPRFWPLWLGLGLLWLIVQLPFCVLLVIGRALGAIMYRVATDRKKIASRNLELCFPHLSAAERKRLLKENFASTGIAFFEMAMSWWWSKKRLARLAHVEGLEHLQNAQEKGEGVILMALHFTTLEIGAALLGQQHTIDGMYREHKSPLFDFVQRRGRERHNLDSLAVERDDVRGMLKLLRAGRAIWYAPDQDYGAKQSIFVPLFGIQAATVTATSKFARLGRAQVVPFTQRRLADGSGYRLVIHPPLDNFPGESDEADCLRINQWVEKAVTECPEQYLWAHRRFKSRPPGEPKLYNKHK
>LT962481.1|SOQ01778.1|4293315_4294500_-|patatin
MLDPAVAINAVRSPVEPVTGLILSGGGARAAYQVGVLAGIADLLPAGAPNPFPVIVGTSAGAINAVKLASGALHFRIAIHQLTEFWQSFRSHQVLRSDWSGVIHQASRFFGRSLMGFGRNIPVALLNSSPLRELLNERLDLSGIEAAINAHHLRAVAVTAFGYESGQAVTFYQGRGTIEPWLRHRRIGRPTQLTVDHLLASSAIPLLFAPVMLDKEYFGDGAVRQSAPISPALHLGANRVLVVGVSGNPRGLKSERPAPRPPNGMQPSLAQISGHMLNSTFIDNLESDIELLERLNTASALLPDEQIRQPGMEPVEVLVISPSRPLDEIAARHRRELPPALRTFLRGPGATRSSGASVLSYLLFESGYCSELIELGRHDAIAQGAELKRFLRLT
>LT962481.1|SOQ01776.1|4293037_4293274_+|hypothetical-protein
MNEPAEFRRPDTFTVHIGQEQYLIPSSCPHREGWLEHGVVNEKRRSITCPLHFSVFSLETGEQLSGPPCGQLQVRRVR
>LT962481.1|SOQ01775.1|4292196_4293054_+|hypothetical-protein
MEDLHKQLFLANRALIEKRVPMPQAILAFEQHWIEDAIERSMTADAPDDLAGLRRMLAELVEQESSEVPPSAQYVANDMTLDEFRILVQEFALDGLTEAQVFYHLMPRLSLPAQMPMLRMMIDEFGSGNLKRSHTTLYQDLLRELEMPLDLQFYVDANSSAGFTFPNMFCWLAMRADDASWFAGVITYFETVVPFFFECYTQLCERLQIKAHTYYSEHVHIDVFHAIEGQRLLKAMDVSGDLDPVKAWRGICMGREITNLAFDLAVEKARRLKHFNKEVSLERAC
>LT962481.1|SOQ01773.1|4291399_4292197_+|dihydrodipicolinate-synthetase
MSGKSILVPLITPLNAQEQVCEASLERLLGSLAPHVDGYIPCLTSGEGWRLSRQQWLQMLTLTLRHAGERSVIAGIERHSTQEVLDFALLAQDAGAQAVMFTSPLTPGISQQAIIEHYQTIHDATHMDIFMYNEAALSGNEKSFATLKAIAQLPRVIGLKDSPSLSRPQAQVDAIRQEGVDYFIGWEMQLAGDLESDGNVVSLANLEPLLCRTAAARQQPALSQEVATLNQRYLLNAPDWYAHIKRELRARGVINSERVVTEEAA
>LT962481.1|SOQ01771.1|4290891_4291410_+|hypothetical-protein
MSDFDLPMIDATVFMGMHHADPGVRDKSLEFFSRFYESSVQMNFAQIGICDAIIWKKGRALQDAYYPFMDVLHTDMAIQREGYSEQVLQRAAGETLFRGLPADKKLLAAQVLEQEIPFYTHDPELLRLQVLQPFLQPFESTIRRQTFPKMLQRLYDQSCAMVISNEDFQHVW
>LT962481.1|SOQ01789.1|4298952_4300242_+|putative-M18-family-aminopeptidase-2
MRAELNKGLIDFLKASPTPFHATATLVQHFEAAGFQRLDERDTWAVETGGRYFVTRNDSSIVAFRMGRQSPLSGGIRMVGAHTDSPCLRVKPQPELQRQGFWQLGVEVYGGALLAPWFDRDLSLAGRVTFRRDGKVESQLIDFKLPIAVIPNLAIHLNRTANEGWAINAQNELPPILAQVAGDERADFRALLTDQLAREHGLNADVVLDYELSFYDTQGAAVVGLNGDFLAGARLDNLLSCFAGMQALLNTESDETALLVCTDHEEVGSSSACGADGAMLEQIVQRLLPSSEDYVRTIQKSLLISADNAHGIHPNYADKHDANHGPKLNAGPVIKVNSNQRYATNSETAGFFRHLCMAEEVPVQSFVVRSDMGCGSTIGPITASHLGIRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLSAFYASHELP
>LT962481.1|SOQ01791.1|4300493_4304552_-|Ice-nucleation-protein
MNLDKALVLRTCANNMADHCGLIWPASGTVESKYWQSTRRHENGLVGLLWGAGTSAFLSVHADARWIVCEVAVADIISLDEPGMVKFPRAEVVHVGDRISASHFISARQADPASTPPPTSMTTATPPPTPTPAAAHVTLPVAASVTLPVAEQASHEVFDVALVIAAAPSVNTLPVTTPQNLQTATYGSTLSGDNHSRLIAGYGSNETAGNHSDLIAGYGSTGTAGSDSSLVAGYGSTQTAGGDSALTAGYGSTQTAREGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGEDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGGDSSLTAGYGSTQTAQEGSNLTSGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGSDSSLIAGYGSTQTSGSDSSLTAGYGSTQTAQEGSNLTAGYGSTGTAGVDSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSDSALTAGYGSTQTAQEGSNLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAREGSTLTAGYGSTGTAGADSSLIAGYGSTQTSGSESSLTAGYGSTQTAQQGSVLTSGYGSTQTAGAASNLTTGYGSTGTAGHESFIIAGYGSTQTAGHKSILTAGYGSTQTARDGSDLIAGYGSTGTSGSSSSLIAGYGSTQTASYKSMLTAGYGSTQTAREHSDLVAGYGSTSTAGSNSSLIAGYGSTQTAGFKSILTAGYGSTQTAQERSDLVAGYGSTSTAGYSSSLIAGYGSTQTAGYGSTLTTGYGSTQTAQENSSLTTGYGSTSTAGYSSSLIAGYGSTQTAGYESTLTAGYGSTQTAQERSDLVTGYGSTSTAGYASSLIAGYGSTQTAGYESTLTAGYGSTQTAQENSSLTTGYGSTSTAGFASSLIAGYGSTQTAGYKSTLTAGYGSTQTAEYGSSLTAGYGSTATAGQDSSLIAGYGSSLTSGIRSFLTAGYGSTLIAGLRSVLIAGYGSSLTSGIRSTLTAGYGSNQIASYGSSLIAGHESIQVAGNKSMLIAGKGSSQTAGFRSTLIAGAGSVQLAGDRSRLIAGADSNQTAGDRCKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQSRLTAGKNSILTAGARSKLIGSEGSTLSAGEDSTLIFRLWDGKRYRQLVAKTGENGVEADIPYYVNEDDDIVDKPDEEDDWIEVE
>LT962481.1|SOQ01793.1|4305011_4305731_-|putative-transcriptional-regulator-of-2-aminoethylphosphonate-degradation-operon
MREDVPRAVTTICHALQEQIEHGLLPHGSKLPAERKLSEVFATTRITLREALLQLESQGLIYREERRGWFISPPRLAYDLIRRSHFHAMVCAQGRVPHTQLLSARLQPASAMICEMLELPALSSVIQICRARRIDQRLVLYVEHYLRPELFPGILEHDLNESLTALYARCYDIHCGRVRFDMVPTSLHSEASAALKVSLGSPGLRIARVNYDRKDRLIDCDLEYWRHDAIHVRAEVHGD
>LT962481.1|SOQ01795.1|4306085_4307153_+|ABC-transporter-substrate-binding-protein
MKHLLLASLLGSAMAMSSLVMAADTDLKTLEAAAKAEGAVNSLGMPDDWANWGGIWKDLEAKYGLKHMDTDMSSAQEIAKFEAEKDNASGDIGDVGAAFGPIAAAKGVTQPYKPTTWEQIPTWAKDTDGHWALAYTGTIAFIVNKNLLHGSEIPKSWADLKTGKYKVSIGDVSTAAQAANGVLAAAIAMKGDESNIAPGLALFTDLAKQKRLSLANPTIQTIEKGEIEVGVVWDFNGLSYKAKMTKPDDYVVLIPSDGSVISGYTTIINKYAKHPNAAKLAREYTFSDAGQIRLAEGNARPIRVEHIKLPEDVQAKLLPQDQYKNAKPIKNADAWEKTSKALPQMWNEQVIIEMN
>LT962481.1|SOQ01797.1|4307231_4308038_+|hypothetical-protein
MKHNVILIVLDGLNYEVARHAMGHLQAWHAAGRAALYKIECELPALSRPLYECILTGVAPIDSGIVHNNVSRLSNQRSIFHYARDAGLSTAAAAYHWVSELYNRTPFDPSRDRHTEAADLPIQHGLFYWADHYPDSHLFADAESLRLSHAPNFLLIHPMNIDDAGHKHGLDTAQYRNSARSADIILADYLQRWLDAGYQVLVTADHGMNNDRSHNGLLPEEREVPLFVIGDAFSLNVDAAPRQTDLCGTVCELLGVPHDKAVCREILN
>LT962481.1|SOQ01798.1|4308034_4308877_+|ABC-transporter-permease
MTTFSRGKWLGLLCLLPFAVFFIVFQIAPLLWVAIHSLQSDAGWGWENFTRAFSSKFYRQAIQYSLEISFWSSLFGIIISVLGAYSLRKVDSRLRDFVNSFANMTSNFAGVPLAFAFIILLGFNGALTLILKQTGIIDDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDAVREDWNESAALLGASSYQFWRYIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMVAGDITLDPNMASALAMILVGLMTLVTVVHQWLLRRSYHVTR
>LT962481.1|SOQ01800.1|4308863_4309661_+|ABC-transporter-permease
MSRVERGPASIYHKTVVCLLFLILLLPLAGTFLYSIATSWSATILPSGLTFKWYVALWSDPRFLTAFGQSLLVCVGALILSVVLILPLLFVVHYYFPRLDGLMNILILLPFAVPPVVSSVGLLQLYGSGPMAMVGTPWILIGCYFTVALPFMYRAITNNLQAINLTDLMDAARLLGASTWQAAFMVVLPNLRKGLMIALLLSFSFLFGEFVFANLLVGTRYETLQVYLNNMRNSSGHFNSALVISYFLFVLVLTWAANRLNKDKD
>LT962481.1|SOQ01803.1|4309662_4310652_+|Spermidine/putrescine-import-ATP-binding-protein-PotA
MSFVSIENLQKSYASTSVFSDINCSIAKGEFVTLLGPSGCGKSTLLRCIAGLTPVNSGHILLDGSNLVPLTPQKRNIGMVFQSYALFPNMTVEQNVAFGLRIQKVSADESTRRVTDILRMVELHDFATRYPHQLSGGQCQRVALARSLVTRPRLLLLDEPLSALDARIRKNLREQIRAIQRELGLTTIFVTHDQEEALTMSDRIFLMNQGRIVQSGDAETLYTAPVDVFAAGFIGNYNLLEADDATRLMQRPINSRVAIRPESIQLSLTGELEGEIRSHSLLGNVIRYRVQARGVELVVDVLNRSADDLHPDGRRVTLNIEPSALCALD
>LT962481.1|SOQ01805.1|4310751_4311405_+|HAD-family-hydrolase
MPLAIFDLDETLIGGDCATLWSEQMGRLGWVDSTSFMQRNDELMAAYSEGKLAMEDYMAFSLEPMAGRTPEEIDHLVGPWVEDVIEPIIYSDACTCIAKHRAKGDRILVISASGVHLVKPIAERLGIDEVLGIELDVQHGVYSGATVGVLTYREGKITRLMEWLDAEGENLEGASFYSDSRNDLPLLLKVDHPNVVNPDAVLLEHARKAGWPVHDWS
>LT962481.1|SOQ01807.1|4311424_4312387_-|Quinone-oxidoreductase-PIG3
MKALQGVEGHVEWVEEPSPALDVGQVRIKVAAAGLNRADLLQREGKYPPPPGVTQTLGLECSGVIAEVGPGSSWVVGDRVCALLAGGAMAEEVVVDGRHVLPVPEGLSLHEAAAIPEVYATAWLNLFELAGLKPGEKVLLHAGASGVGSAGIQLCKAFGNPVWVSVGSAERLAYCVELGAQGGVVRSESLEGLNDFAPFNVILDPVGASYAELNVKLLALDGRWVLIGVMSGREAKVDLAHVLGKRIRLMGSTLRSRDDTFKADLLSDLGQHVWPLFTEGRLKPQLAKSFAIKDAEAAFEELATNTVSGKIVLVINESLV

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Crispr_ID: LT962481_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962481_6

5380612-5380705

Orphan

Consensus_repeat	Method
CGATAGGTGTCCGCAAGATCACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962481_6

>merge|LT962481|6|5380612-5380705|CRISPRCasFinder
CGATAGGTGTCCGCAAGATCACCACCTGGCCCGGCCCCAGCGCGGGCATGCCGCACCGGGGCGTGAGGAGCGATAGGTGCCCGCAAGATCACCA

>LT962481|6|6|5380612-5380705|CRISPRCasFinder
CGATAGGTGTCCGCAAGATCACCA	CCTGGCCCGGCCCCAGCGCGGGCATGCCGCACCGGGGCGTGAGGAG
CGATAGGTGCCCGCAAGATCACCA

Protein	Signature genes	Signature genes Name	Protein_function
LT962481.1\|SOQ03743.1\|5367386_5368418_+\|putative-ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
LT962481.1\|SOQ03766.1\|5384001_5384523_-\|aspartyl-protease	unknown	unknown	gnl\|CDD\|226106
LT962481.1\|SOQ03749.1\|5370591_5372127_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370050
LT962481.1\|SOQ03762.1\|5380856_5381552_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377153
LT962481.1\|SOQ03775.1\|5388180_5388987_-\|3',5'-cyclic-adenosine-monophosphate-phosphodiesterase-CpdA	unknown	unknown	gnl\|CDD\|182997
LT962481.1\|SOQ03751.1\|5372172_5374005_+\|Phosphatidylserine-decarboxylase-proenzyme	unknown	unknown	gnl\|CDD\|104071
LT962481.1\|SOQ03754.1\|5374260_5376045_+\|hypothetical-protein	unknown	unknown	unknown
LT962481.1\|SOQ03761.1\|5380017_5380557_-\|transposase	unknown	unknown	gnl\|CDD\|225511
LT962481.1\|SOQ03781.1\|5390400_5391147_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378702
LT962481.1\|SOQ03764.1\|5381735_5383991_-\|DNA-topoisomerase-4-subunit-A	unknown	unknown	gnl\|CDD\|235503
LT962481.1\|SOQ03771.1\|5385493_5387398_-\|DNA-topoisomerase-4-subunit-B	unknown	unknown	gnl\|CDD\|235501
LT962481.1\|SOQ03773.1\|5387474_5388092_-\|esterase	unknown	unknown	gnl\|CDD\|225692
LT962481.1\|SOQ03747.1\|5369532_5370384_-\|Motility-protein-A	unknown	unknown	gnl\|CDD\|181655
LT962481.1\|SOQ03760.1\|5379181_5380018_-\|putative-transposase-InsK-for-insertion-sequence-element-IS150	unknown	unknown	gnl\|CDD\|222853
LT962481.1\|SOQ03745.1\|5368479_5369529_-\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
LT962481.1\|SOQ03756.1\|5376110_5377367_-\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|319803
LT962481.1\|SOQ03769.1\|5384519_5385497_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379191
LT962481.1\|SOQ03779.1\|5389575_5390223_-\|ADP-ribose-pyrophosphatase	unknown	unknown	gnl\|CDD\|182682
LT962481.1\|SOQ03758.1\|5377455_5378997_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226249
LT962481.1\|SOQ03777.1\|5389132_5389585_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225693

Protein	Function_ID	Function_description	E-value
LT962481.1\|SOQ03743.1\|5367386_5368418_+\|putative-ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
LT962481.1\|SOQ03766.1\|5384001_5384523_-\|aspartyl-protease	gnl\|CDD\|226106	COG3577, COG3577, Predicted aspartyl protease [General function prediction only].	5.2359e-50
LT962481.1\|SOQ03749.1\|5370591_5372127_+\|hypothetical-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	3.17928e-08
LT962481.1\|SOQ03762.1\|5380856_5381552_-\|hypothetical-protein	gnl\|CDD\|377153	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component. ABC_trans_aux is a family of bacterial proteins that act as auxiliarires to the ABC-transporter in the gamma-hexachlorocyclohexane uptake permease system in Sphingobium japonicum. Gamma-hexachlorocyclohexane, or Lindane, can be used as the sole source of carbon in S.japonicum in aerobic conditions. Lindane is an insecticide.	9.71642e-34
LT962481.1\|SOQ03775.1\|5388180_5388987_-\|3',5'-cyclic-adenosine-monophosphate-phosphodiesterase-CpdA	gnl\|CDD\|182997	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional.	8.94366e-97
LT962481.1\|SOQ03751.1\|5372172_5374005_+\|Phosphatidylserine-decarboxylase-proenzyme	gnl\|CDD\|104071	PRK09629, PRK09629, bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional.	0
LT962481.1\|SOQ03761.1\|5380017_5380557_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.80035e-07
LT962481.1\|SOQ03781.1\|5390400_5391147_+\|hypothetical-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	2.63538e-06
LT962481.1\|SOQ03764.1\|5381735_5383991_-\|DNA-topoisomerase-4-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
LT962481.1\|SOQ03771.1\|5385493_5387398_-\|DNA-topoisomerase-4-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
LT962481.1\|SOQ03773.1\|5387474_5388092_-\|esterase	gnl\|CDD\|225692	COG3150, COG3150, Predicted esterase [General function prediction only].	4.15346e-71
LT962481.1\|SOQ03747.1\|5369532_5370384_-\|Motility-protein-A	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	1.68547e-157
LT962481.1\|SOQ03760.1\|5379181_5380018_-\|putative-transposase-InsK-for-insertion-sequence-element-IS150	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.92752e-53
LT962481.1\|SOQ03745.1\|5368479_5369529_-\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	6.53469e-175
LT962481.1\|SOQ03756.1\|5376110_5377367_-\|phosphoserine-phosphatase	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.2761e-103
LT962481.1\|SOQ03769.1\|5384519_5385497_-\|hypothetical-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	9.71175e-09
LT962481.1\|SOQ03779.1\|5389575_5390223_-\|ADP-ribose-pyrophosphatase	gnl\|CDD\|182682	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.	3.79655e-71
LT962481.1\|SOQ03758.1\|5377455_5378997_+\|histidine-kinase	gnl\|CDD\|226249	COG3726, AhpA, Uncharacterized membrane protein affecting hemolysin expression [General function prediction only].	6.11571e-45
LT962481.1\|SOQ03777.1\|5389132_5389585_-\|hypothetical-protein	gnl\|CDD\|225693	COG3151, COG3151, Uncharacterized protein conserved in bacteria [Function unknown].	1.97309e-55

>LT962481.1|SOQ03761.1|5380017_5380557_-|transposase
MGKYTEQAKLAAVKEYCAGKAGLRDVAHRHDVDFSCLRQWVAAYQIHGPAALKEKRRQRYSDEFKLAVLKRMHDERLSLRQTAALFDIRQFGIINLWQRLFDEGALNASSKPPKKAGRPRKMTTPLPPVNSAPINDESRSRDELLAEVKQLRMEVDYLKKLDALVQKKQRIAQQKKRKS
>LT962481.1|SOQ03760.1|5379181_5380018_-|putative-transposase-InsK-for-insertion-sequence-element-IS150
MELRPLHSLDGLLKFAGLARSTFYYQQKVLLADDKYAGLKDLIQATFYEHKGRYGYRRITAALRRAGHLVNHKTVQKLMGQLGLKSLIRVKKYRSYKGETGKAAPNLLKRDFKAQYLNQKWATDVTEFKVGGQKLYLSPIMDLYSGEIISYAIARRPLYSMVDEMLEGAFKRLGPHEKPILHSDQGWQYRMPIYQRLLNENSIAASMSRKGNCYDNAAIESFFSTLKSEFFYLNKFNDLDELQAGIEEYIEYYNHSRIKLKLNGLSPVEYRMQAAKAA
>LT962481.1|SOQ03758.1|5377455_5378997_+|histidine-kinase
MNRPTPVKTDNFFLLIFRALRHRRVPIALRIASHNVILVALALVIYAGVMGLQFKQAMHEQADALGQALTTQTATSATELLVSNDILSLNVLLGNLVKNPLVAHAAIYSVDNRILAEAGQRPKNGLLGEAQGLYEIKITFQDVMAGHLRISLDMSQFQQPLTISLQSMGILAGILLALALALSLRLGRHISTPLMQMRIWLRDIDPYTPATDRQDEIGDLARQLRTSFAPPVPEPEPLPEPEYDGEEDDSEDPYLEPEEKPAPVVSARSSEAKPRLPAPPVQRRIVAEEDEDDDEDPFADLRDHSDNSPAVRQAAASVAPVEPHNSAVLAVQLGAQDQLRRLPRARLTELLQRYRDCLDQAASLYESELHTLNDGSTLMLFHSHESGDDYLTNAICCGELLRALSHALQIEVADSGITLQLQLGLTLGEGLSGLSQIDLLLTETAQDALALSQHSRNLLLVERRINDDPLIRQRARIRPIASPEGACCVERLMEPYPSMLERQLARMHESNKA
>LT962481.1|SOQ03756.1|5376110_5377367_-|phosphoserine-phosphatase
MWLECVFFPLRGCALREIVLINITGVDRPGLTAAITGVLAQGGVNILDIGQAVIHDTLSFGILVEIPDTVQGSSVLKDILFTAYELDQQVRFTAVSETDYQHWVEGQGKARHIVTLLTRKVTAEQLQRVSAITARYGLNIDQIDRLSGRMPLDTPADKGKGCIEFTVRGEPADPKAMQAEFLAVAQDLDVDIAFQQDSLFRRNRRLAVFDMDSTLIEAEVIDELAKAAGVGEQVSEITERAMRGELDFSESFKERLALLKGLDVSVLDEIGASLRLTEGAETLFSELKRLGYKTAILSGGFTYFAKQLQAKLGIDYVFANELEVVDGKVTGVAVEPIVNAQRKADLLRELAHKEGLSLEQTIAVGDGANDLPMLAIAGLGVAFRAKPLVKQSAKQAISTLGLDGVLYLLGLRDREGKR
>LT962481.1|SOQ03754.1|5374260_5376045_+|hypothetical-protein
MSNFSLPLLLRAPTPTQSSLTFSEANPRDLKRWISRLPKANLGEMARQLYQGLTELNQLITPSENRLQLLELLRPEVYFVCKHLERHFLNQAIVLDERPRKVANLCQALQNHLATGYKQIIQQVTPRYTRDQAGLFSTALQRAVHGLNGPLIRANQLYCPVQDGLWLELHQIYQIARQYQLHNTPVEEPLAHHSKVLSVEQTYVIALLMGCSRCNQMRQLNIGKLADALEAWSALVKLQSPATQSSLFALDPTADKPPLYRTLFSDEQSPRLLGINTLALAEAINQYLALPDDQRTPSPLLIPTGINTDLLQHLAVAWGDVAERTFQRTPGQGTLRLCIGMSALHFYVAGQKSFSELLQLNSATSAASFSLKMANDDADDPWASAFDTQRGKTSSVLLPYEEIEYPKNDGDSDSLSNNQHTFPTFDLNIVNHSPGGYCLAWQKDVPQQLQAGELVGIQDDAGQGWSVAIVRWIRQVRSGGTQMGIELIAPFAQPCGMQLIREQQNSQYLRTLMLPEVRAMEKPPTVLAPRLPFQEGSMVMINVNGEERRASLSNRQVSSASYNQFEYQMYDAPKAAETEKARPDQEFDSLWGTL
>LT962481.1|SOQ03751.1|5372172_5374005_+|Phosphatidylserine-decarboxylase-proenzyme
MSAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAPGLLPDTAGLEQVFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAWEAQLLPMSTDVPPAADTPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPNVAAAPVEAVEVAQPVEPAQPAPAETVEPVRATEPGRTSQKYSGHSSSGPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAFTAWFARRYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDATPGAILSPADGAISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMVYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLVTPPKRELKTFSYDEAARAPIHLEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQMGQALAVPAQA
>LT962481.1|SOQ03749.1|5370591_5372127_+|hypothetical-protein
MPTVHAAHHLVPKTLDAWVKLLDGIALPVPAVNHGHVRAALNDSRRSLREIAEMMQESPALVLSVMREANHHTHGLTEQAESLEIAINRLGLARTEVLLGRLPAKPPEEIPAAYRQLILVSQHATQQANGLFASRLARLWQDIHMGSLLFLSPLWPMALAYPKLLEELELRVIHKGHSSATVEKELFGVNLLELCLALAEFWRLPIWVTRGYKLLINERRDLAKALRIAREDNSPLQQQQLMDDDPNLRRWLNQPANTVLLGNGLALAAQQAWNSPHCLRWERLTSLYLQQPISEVQQQAHQNAASSARVYAEKDLWHPAESLIWPWDARRVRRDNEPAPPPSADALQMWRKQCAELLQDPSPFINAMHLTTSARDAFISCGMERVMLLMLDKTSTVLRVNQTAGLPKDAAALQLFIKESTVLQRLLTQPTQLRMTPANSAQFAALLPPPLKTLFSGQHWLIRSLSNNGKVMLLVVADQGGGALSEISVQAFGKTAQCIERALGIFSHRKA
>LT962481.1|SOQ03747.1|5369532_5370384_-|Motility-protein-A
MAKIIGIIVVLASVIGGYVLSHGKVMALFQPYEVLIIGGAALGAFLQANPGYMFMHVFKKSLKMFGTRFTHAYYLEVLGLVYEILNKSRREGMMAIEGDIEDAASSPIFAKYPGVLKDERMTAYICDYLRIMSSGNMAPHELEGLFDMELLSMKEDLEHPSHAITGIADGMPGFGIVAAVLGIVVTMASLGSGDKAAIGMHVGAALVGTFFGILAAYGFFGPLATSLAHDAKEEMNVYESIKASLVASASGMPPSLAVEFGRKVLYPLHRPSFSELEQAVRGR
>LT962481.1|SOQ03745.1|5368479_5369529_-|flagellar-motor-protein-MotB
MENNQPIIIKRVKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLMSSATPEQLLAVAGYFKDPVGFSDSGSPYVIDLGGSPEMSPNQTLNPEMQTTPSPDTVPLEAENAETKAEAVEQERLEMLLQELQTKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDSGSARLKPYFEDILLALADTIKSVPNKVSISGHTDATPFVGSGGFGNWELSANRANAARRALVAGTYPDSQVARVVGYASSALYDRQNPTNPINRRIDIVVLTKKAQHRIEGDQNSGGAPATPAAPTAPAPAVPAAPGAPAAPGASTAAPPDPQAYAQPHEIRQKLNIFDDGKLRVEPAQN
>LT962481.1|SOQ03743.1|5367386_5368418_+|putative-ribosome-biogenesis-GTPase-RsgA
MAKRQLNRRQNWRIEKIQGERAARAAKRESATLETLEGGDLGPEQTGLVIAHFGVQVEVEAQEGEVTGQVFRCHLRANLPALVTGDRVVWRAGNQGIGVIVAQLPRTTELRRPDSRGQLKPVAANVDLIVIVFAPMPEPHANLIDRYLVAAEHAGIRPLLLLNKADLIDEQNAPALNALLAVYRTLGYPVLEVSAHHGDGMQSLQSQLDGHISVFVGQSGVGKSSLVNSLLPETDTRVGPLSEVSGQGTHTTTTARLFHFPRGGDLIDSPGIREFGLGHVSRADVEAGFIEFNDLIGTCRFRDCKHDREPGCALLKGLEDGRVQQQRMNSYRSIIASLPQDSY
>LT962481.1|SOQ03762.1|5380856_5381552_-|hypothetical-protein
MNFLRLPLILLMTGVLGLAGCSVRQPTALYQLDSGEPGQPKQSSGLAVLLGPVSVADYLQRETLLQRQPDGTLTASSDGRWAGNLSSDIDQLLLRQLAWKLDSQRVVMAPATASFTPDVQVVLSITRLDSGAKQPAVLDAQWRLLDRKGHVRDSRLVHLEQVHAGSSADQVKAQGMLLQRLADQVSTAIKPISWQALDEPKKTPVAKAKEPDKPRIPLASPIRTDLEVFRF
>LT962481.1|SOQ03764.1|5381735_5383991_-|DNA-topoisomerase-4-subunit-A
MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMRAVYRIEDGDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGATFECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALLVENS
>LT962481.1|SOQ03766.1|5384001_5384523_-|aspartyl-protease
MSDVQPGKRAGKVLMIMAWAAGLFLATRFFGDWEDRQQNPNAVVTSQHGDGYIEVQLAGNRQGHFVTTGQINGRTVEFMIDTGATDVAVPGDMADRLGLKRGFPVTVSTANGNSQGFRTTLDRLQLGDIVLTNVRALVAPGLDGEQVLLGMSAMKQLEFTQRGGNLLLRQSTK
>LT962481.1|SOQ03769.1|5384519_5385497_-|hypothetical-protein
MIRAWLAALILIAAPVVAAPLEALKLQSEHPVDDMAGGNLSGLAMCNGQLWTVSDRDDDVLYSLDVSQDTWKAQSHHIDAPAPQSYLPLKLRFMAGLSALIRGGSLDFEGVSCDAAGNRYLVSEAYGTVLKVPVSGKPFWLDLPKELVDQARAQGMLQRFNAIFEGIAVSPAGDRLWLAAEREKRGLLVVQRDKEQWTCGQSCVLLSESGLDALPPEQGSKKVSTDFSDVSLYNGKLFTLERAVYRICRRDLETGQIERCWSFAKEAMVPSRRYDQPYGLTEALVVDEKGAWIGIDNNFGVRADGEKRPIVWRFAAPEAGWSAGQ
>LT962481.1|SOQ03771.1|5385493_5387398_-|DNA-topoisomerase-4-subunit-B
MANPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKYFDTPKFSVSRLKHVLKAKAVLCPGLLVSFEDKSSGEKVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGAADISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVLT
>LT962481.1|SOQ03773.1|5387474_5388092_-|esterase
MTSDTPSLLYIHGLNSSALSRKACQLSALMKSLGLADRLQVPELHHHPRQAMLQLEAAITALGRPLLVGSSLGGYYATHLAQRHGLKAVLINPAVNPHQLFDGFLGVQQNLYTGEQWQLTEDHIRALAELEVPAPQDPQQFQVWLQTGDETLDYRRAEKFYRNCALRIQAGGDHSFQGFAEHMPALLTVAGFAPDLLQKIDLSAL
>LT962481.1|SOQ03775.1|5388180_5388987_-|3',5'-cyclic-adenosine-monophosphate-phosphodiesterase-CpdA
MPSAALSSSVLLVQLSDSHLFAEADGALLGMSTRDSLEKVVDRVLAEQPHIDLVVASGDISQDGSVESYQAFRRISGRIDAPARWFAGNHDELPQMEQVAQHNGLLDPVVDIGQWRVTLLDSAVPGSVPGFLADTQLQLLEQSLSEAPDRHHLICLHHHPVAIGCEWMAPIGLRNADALFAVLDRFAQVRAILWGHVHQEFDQMRNGVRLLASPSTCIQFAPGSVDFKVDTTAPGYRWLRLHDDGRLETAVSRVVGLEFEVDYGGTGY
>LT962481.1|SOQ03777.1|5389132_5389585_-|hypothetical-protein
MVVNLLRERYRVDLAGLQAACEANYARLMRLLPDMRNEQRSRRVAVTQGDQMLGVLAVEVLLDCPYTTTLQVRQEHSLPWLPVPVLEVQVYHDARMAEVIGAEHARRFRGIYPYPNADMHQPDEKAQLNLFLGEWLSHCLACGHEFEAVR
>LT962481.1|SOQ03779.1|5389575_5390223_-|ADP-ribose-pyrophosphatase
MSNTAASEKPMTQTTRSAPSAFETIKRENCFKGFYKLDKLHVRHELFAGGMSKEISRELFVRHDAVCVLPYDAKRDEVVLIEQFRVGAMKKTNNPWLVELVAGLIDKDEQPEEVAHREAEEEAGLKFEALWPITKYFPSPGGSDEFVHLFLGRCSSEGAGGLHGLEAEGEDIRVTVWSFDDALQAMKDGTIKNASTIIALQWLALNRAEIRGLWS
>LT962481.1|SOQ03781.1|5390400_5391147_+|hypothetical-protein
MSLLRITSLACLALLLGACQSLFTPNMRTPLQVQRDASELIKPGCTTADCPLVNIDTVHFPDEPRLDAIVQKTLLQLTVADSSASPPASIKAYQEQFLSQAQGRNASYLQAKVREQHDGIVVVELSSYLETGGAHGNPGRAFINYSRQQQKVLTLADMIIPGKESEFWQKAQLAHQGWLVSTKMNEDSEFMKTWPFKRTPHIALTYGAVILKYSVDTIAPYSMGHIELKIPYPQLNGILKPELFPGRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT962481_3	3.3\|4301417\|25\|LT962481\|CRISPRCasFinder	4301417-4301441	25	LT962481.1	4301705-4301729	2	0.92

1. spacer 3.3|4301417|25|LT962481|CRISPRCasFinder matches to position: 4301705-4301729, mismatch: 2, identity: 0.92

gcgagctgttttcctgtgcggtttg	CRISPR spacer
gcgagctgttttcctgcgcggtctg	Protospacer
****************.*****.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT962481_3	3.2\|4301369\|25\|LT962481\|CRISPRCasFinder	4301369-4301393	25	NC_017536	Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence	116239-116263	3	0.88
LT962481_3	3.2\|4301369\|25\|LT962481\|CRISPRCasFinder	4301369-4301393	25	NC_015689	Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence	116241-116265	3	0.88
LT962481_3	3.2\|4301369\|25\|LT962481\|CRISPRCasFinder	4301369-4301393	25	NC_012854	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence	47795-47819	4	0.84
LT962481_3	3.3\|4301417\|25\|LT962481\|CRISPRCasFinder	4301417-4301441	25	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	423009-423033	4	0.84
LT962481_5	5.2\|4301801\|25\|LT962481\|CRISPRCasFinder	4301801-4301825	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	184614-184638	4	0.84
LT962481_5	5.3\|4301849\|25\|LT962481\|CRISPRCasFinder	4301849-4301873	25	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	458617-458641	4	0.84
LT962481_5	5.4\|4301897\|25\|LT962481\|CRISPRCasFinder	4301897-4301921	25	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1496824-1496848	4	0.84
LT962481_5	5.4\|4301897\|25\|LT962481\|CRISPRCasFinder	4301897-4301921	25	MN234167	Mycobacterium phage Vanisoa, complete genome	45033-45057	4	0.84
LT962481_5	5.5\|4301945\|25\|LT962481\|CRISPRCasFinder	4301945-4301969	25	NC_041931	Arthrobacter phage Jawnski, complete genome	13244-13268	4	0.84
LT962481_5	5.5\|4301945\|25\|LT962481\|CRISPRCasFinder	4301945-4301969	25	NC_042014	Arthrobacter phage Piccoletto, complete genome	13237-13261	4	0.84
LT962481_5	5.5\|4301945\|25\|LT962481\|CRISPRCasFinder	4301945-4301969	25	MF324907	Arthrobacter phage Beans, complete genome	13249-13273	4	0.84
LT962481_5	5.8\|4302089\|25\|LT962481\|CRISPRCasFinder	4302089-4302113	25	NZ_LR134463	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence	33448-33472	4	0.84
LT962481_5	5.8\|4302089\|25\|LT962481\|CRISPRCasFinder	4302089-4302113	25	MK494116	Mycobacterium phage Dulcie, complete genome	32050-32074	4	0.84
LT962481_5	5.9\|4302137\|25\|LT962481\|CRISPRCasFinder	4302137-4302161	25	NC_022540	Xanthomonas citri pv. fuscans plasmid plb, complete sequence	1878-1902	4	0.84
LT962481_5	5.9\|4302137\|25\|LT962481\|CRISPRCasFinder	4302137-4302161	25	NZ_CP021009	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence	6284-6308	4	0.84
LT962481_5	5.9\|4302137\|25\|LT962481\|CRISPRCasFinder	4302137-4302161	25	NZ_CP021009	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence	25976-26000	4	0.84
LT962481_5	5.9\|4302137\|25\|LT962481\|CRISPRCasFinder	4302137-4302161	25	NZ_CP020995	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence	13385-13409	4	0.84
LT962481_5	5.9\|4302137\|25\|LT962481\|CRISPRCasFinder	4302137-4302161	25	NZ_CP020995	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence	32867-32891	4	0.84
LT962481_5	5.9\|4302137\|25\|LT962481\|CRISPRCasFinder	4302137-4302161	25	NZ_CP021005	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence	3850-3874	4	0.84
LT962481_5	5.9\|4302137\|25\|LT962481\|CRISPRCasFinder	4302137-4302161	25	NZ_CP021005	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence	23368-23392	4	0.84

1. spacer 3.2|4301369|25|LT962481|CRISPRCasFinder matches to NC_017536 (Oligotropha carboxidovorans OM4 plasmid pHCG3B, complete sequence) position: , mismatch: 3, identity: 0.88

gcgagctggcaaagccggcggtgga	CRISPR spacer
tcgagctcgcaaagccggcggcgga	Protospacer
 ****** *************.***

2. spacer 3.2|4301369|25|LT962481|CRISPRCasFinder matches to NC_015689 (Oligotropha carboxidovorans OM5 plasmid pHCG3, complete sequence) position: , mismatch: 3, identity: 0.88

gcgagctggcaaagccggcggtgga	CRISPR spacer
tcgagctcgcaaagccggcggcgga	Protospacer
 ****** *************.***

3. spacer 3.2|4301369|25|LT962481|CRISPRCasFinder matches to NC_012854 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagctggcaaagccggcggtgga	CRISPR spacer
gcgatctggcaaagcgggcggtgtg	Protospacer
**** ********** ******* .

4. spacer 3.3|4301417|25|LT962481|CRISPRCasFinder matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

gcgagctgttttcctgtgcggtttg	CRISPR spacer
gcgagctgttttcctttgaggttgt	Protospacer
*************** ** ****

5. spacer 5.2|4301801|25|LT962481|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 4, identity: 0.84

aggaactggagtagcccgcagtcga	CRISPR spacer
gggaactgatgtagcccgcagtcgc	Protospacer
.*******. **************

6. spacer 5.3|4301849|25|LT962481|CRISPRCasFinder matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 4, identity: 0.84

gatcactgcgctcctgtgccgtctg	CRISPR spacer
catcactgcggtcctgtgccgtccc	Protospacer
 ********* ************.

7. spacer 5.4|4301897|25|LT962481|CRISPRCasFinder matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gtatgcttttgaagcccgccgtctg	CRISPR spacer
gtaggcgtttgaagcccgccgtcaa	Protospacer
*** ** **************** .

8. spacer 5.4|4301897|25|LT962481|CRISPRCasFinder matches to MN234167 (Mycobacterium phage Vanisoa, complete genome) position: , mismatch: 4, identity: 0.84

gtatgcttttgaagcccgccgtctg	CRISPR spacer
tcatgcccttgaagcccgccgtctg	Protospacer
 .****..*****************

9. spacer 5.5|4301945|25|LT962481|CRISPRCasFinder matches to NC_041931 (Arthrobacter phage Jawnski, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgtttgaacctgccgttga	CRISPR spacer
gcggactgcttgaacctgccgtttt	Protospacer
***.****.**************

10. spacer 5.5|4301945|25|LT962481|CRISPRCasFinder matches to NC_042014 (Arthrobacter phage Piccoletto, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgtttgaacctgccgttga	CRISPR spacer
gcggactgcttgaacctgccgtttt	Protospacer
***.****.**************

11. spacer 5.5|4301945|25|LT962481|CRISPRCasFinder matches to MF324907 (Arthrobacter phage Beans, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgtttgaacctgccgttga	CRISPR spacer
gcggactgcttgaacctgccgtttt	Protospacer
***.****.**************

12. spacer 5.8|4302089|25|LT962481|CRISPRCasFinder matches to NZ_LR134463 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence) position: , mismatch: 4, identity: 0.84

gcgaactgcttgagcctgaggtccc	CRISPR spacer
gcgagctgcttgagcatgaggtcga	Protospacer
****.********** *******

13. spacer 5.8|4302089|25|LT962481|CRISPRCasFinder matches to MK494116 (Mycobacterium phage Dulcie, complete genome) position: , mismatch: 4, identity: 0.84

gcgaactgcttgagcctgaggtccc	CRISPR spacer
tcgaactgcttgacccagaggtcca	Protospacer
 ************ ** *******

14. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NC_022540 (Xanthomonas citri pv. fuscans plasmid plb, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***

15. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021009 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***

16. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021009 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6975 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***

17. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP020995 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***

18. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP020995 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP4885 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***

19. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021005 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***

20. spacer 5.9|4302137|25|LT962481|CRISPRCasFinder matches to NZ_CP021005 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pB, complete sequence) position: , mismatch: 4, identity: 0.84

ggtcgctaccgtccctggcagtctg	CRISPR spacer
ggtcgctaccgtccttggccgtcgt	Protospacer
**************.**** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

305771 : 348158

Bacillus_phage(75.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOP95010.1\|305771_306578_-\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	4.7e-83	57.4
SOP95012.1\|306607_307123_-\|transposase	transposase	A0A1B1P776	Bacillus_phage	5.2e-11	32.0
SOP95014.1\|307326_307959_-	copper-binding protein	NA	NA	NA	NA
SOP95016.1\|308028_308520_-	cysteine synthase	NA	NA	NA	NA
SOP95018.1\|308768_309419_+	hypothetical protein	NA	NA	NA	NA
SOP95020.1\|309539_311072_-	sulfate transporter	NA	NA	NA	NA
SOP95022.1\|311176_311917_-	Carbonic anhydrase 1	NA	NA	NA	NA
SOP95025.1\|312124_313183_-	radical SAM protein	NA	NA	NA	NA
SOP95026.1\|313305_313974_-	Enhancing lycopene biosynthesis protein 2	NA	NA	NA	NA
SOP95028.1\|314160_314823_-	membrane protein	NA	NA	NA	NA
SOP95031.1\|315054_316065_+	Delta-aminolevulinic acid dehydratase	NA	NA	NA	NA
SOP95033.1\|316081_318292_+	Polyphosphate kinase	NA	NA	NA	NA
SOP95036.1\|318278_319781_-	Exopolyphosphatase	NA	NA	NA	NA
SOP95038.1\|320453_321188_-	Glutamate transport ATP-binding protein GluA	G9BWD6	Planktothrix_phage	3.4e-32	39.2
SOP95040.1\|321174_321822_-	amino acid ABC transporter permease	NA	NA	NA	NA
SOP95042.1\|321821_322487_-	polar amino acid ABC transporter permease	NA	NA	NA	NA
SOP95044.1\|322518_323304_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
SOP95046.1\|323554_324259_+	GntR family transcriptional regulator	NA	NA	NA	NA
SOP95047.1\|324380_324731_+	Thioredoxin	A0A1J0GW78	Streptomyces_phage	2.7e-19	46.2
SOP95050.1\|324962_326222_+	Transcription termination factor Rho	NA	NA	NA	NA
SOP95052.1\|326349_327816_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA
SOP95057.1\|327815_328784_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
SOP95059.1\|328992_329661_+	calcium transporter ChaC	NA	NA	NA	NA
SOP95061.1\|329661_331011_-	Glycerol-3-phosphate transporter	NA	NA	NA	NA
SOP95063.1\|331285_331951_+	cell envelope biogenesis protein TonB	NA	NA	NA	NA
SOP95065.1\|331947_332481_+	energry transducer TonB	NA	NA	NA	NA
SOP95067.1\|333031_333847_-	Hypothetical protein	NA	NA	NA	NA
SOP95075.1\|333891_334164_-	Pyocin immunity protein	NA	NA	NA	NA
SOP95077.1\|334160_336125_-	S-type pyocin	NA	NA	NA	NA
SOP95079.1\|336223_337201_-	NADPH:quinone oxidoreductase	NA	NA	NA	NA
SOP95082.1\|337331_337739_+	flagellar basal body protein FliL	NA	NA	NA	NA
SOP95084.1\|337745_338195_-	hypothetical protein	NA	NA	NA	NA
SOP95086.1\|338388_338541_+	putative membrane protein	NA	NA	NA	NA
SOP95088.1\|338586_339198_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
SOP95091.1\|339501_339831_-	cell division protein ZapA	NA	NA	NA	NA
SOP95094.1\|339827_340037_-	hypothetical protein	NA	NA	NA	NA
SOP95096.1\|340187_340742_+	UPF0149 protein	NA	NA	NA	NA
SOP95098.1\|340817_342152_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
SOP95100.1\|342148_343336_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
SOP95102.1\|343426_344617_+	2-octaprenylphenol hydroxylase	NA	NA	NA	NA
SOP95110.1\|345022_345829_-\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	4.7e-83	57.4
SOP95112.1\|345858_346374_-\|transposase	transposase	A0A1B1P776	Bacillus_phage	5.2e-11	32.0
SOP95114.1\|346782_347322_+\|transposase	transposase	A0A1B1P776	Bacillus_phage	2.0e-13	34.8
SOP95118.1\|347321_348158_+\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	4.7e-78	53.2

DBSCAN-SWA_2

559604 : 623421

Pseudomonas_phage(48.48%)

tRNA,tail,plate,integrase

attL 547410:547425|attR 607990:608005

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
547410:547425	attL	NA	NA	NA	NA
SOP95489.1\|559604_560066_-\|integrase	integrase	W6MYA3	Pseudomonas_phage	1.4e-15	43.0
SOP95491.1\|560279_560549_-\|integrase	integrase	NA	NA	NA	NA
SOP95493.1\|560901_563388_-	diguanylate phosphodiesterase	A0A127AWB9	Bacillus_phage	8.4e-14	36.2
SOP95495.1\|563656_565507_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.0e-36	34.7
SOP95497.1\|565574_567530_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.8e-72	38.0
SOP95499.1\|568008_568224_-	hypothetical protein	NA	NA	NA	NA
SOP95501.1\|568422_569448_+\|tRNA	tRNA N6-adenosine threonylcarbamoyltransferase	A0A0R6PI74	Moraxella_phage	3.6e-104	56.1
SOP95503.1\|569471_570041_-	Glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SOP95505.1\|570115_570469_+	dihydroneopterin triphosphate 2'-epimerase	NA	NA	NA	NA
SOP95507.1\|570459_570984_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA
SOP95509.1\|571082_572309_-	Multifunctional CCA protein	A0A0F6YPT7	Sinorhizobium_phage	3.9e-81	46.8
SOP95511.1\|572406_573969_-	hypothetical protein	NA	NA	NA	NA
SOP95513.1\|573965_575237_-	UPF0229 protein	A0A140HLI1	Bacillus_phage	4.9e-10	40.4
SOP95515.1\|575357_577280_-	hypothetical protein	NA	NA	NA	NA
SOP95517.1\|577564_577885_-	Thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
SOP95519.1\|577908_578784_-	Bis(5'-nucleosyl)-tetraphosphatase, symmetrical	A0A291L9W7	Bordetella_phage	1.3e-06	43.8
SOP95521.1\|578783_579164_-	Protein ApaG	NA	NA	NA	NA
SOP95523.1\|579280_580087_-	Ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA
SOP95526.1\|580083_581073_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA
SOP95528.1\|581069_582398_-	Chaperone SurA	NA	NA	NA	NA
SOP95530.1\|582372_585153_-	LPS-assembly protein LptD	NA	NA	NA	NA
SOP95532.1\|585282_586305_+	aminoglycoside phosphotransferase	NA	NA	NA	NA
SOP95534.1\|586402_587074_+	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA
SOP95536.1\|587074_587842_+	molecular chaperone DnaJ	NA	NA	NA	NA
SOP95538.1\|587863_588868_-	hypothetical protein	NA	NA	NA	NA
SOP95539.1\|588982_590995_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SOP95541.1\|590991_591621_+	transcriptional regulator	NA	NA	NA	NA
SOP95543.1\|592147_593272_+	Spermidine/putrescine import ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	2.3e-27	31.4
SOP95545.1\|593354_594389_+	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA
SOP95547.1\|594466_595714_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
SOP95549.1\|595725_596547_+	polyamine ABC transporter permease	NA	NA	NA	NA
SOP95551.1\|596762_597437_+	Ribulose-phosphate 3-epimerase	NA	NA	NA	NA
SOP95553.1\|597433_598252_+	Phosphoglycolate phosphatase	NA	NA	NA	NA
SOP95557.1\|598322_599804_+	Anthranilate synthase component 1	NA	NA	NA	NA
SOP95559.1\|599813_600209_+	hypothetical protein	NA	NA	NA	NA
SOP95560.1\|600035_601958_-	Esterase EstA	NA	NA	NA	NA
SOP95562.1\|602063_602330_-	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-16	51.2
SOP95564.1\|602427_602676_-	hypothetical protein	NA	NA	NA	NA
SOP95566.1\|602830_603478_-	repressor	A0A0M4QWY1	Salmonella_phage	3.8e-51	47.6
SOP95568.1\|603631_604075_+	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.5e-24	45.8
SOP95570.1\|604347_604533_+	hypothetical protein	B5TK59	Pseudomonas_phage	1.3e-12	89.5
SOP95573.1\|604544_605717_+	glycoside hydrolase	NA	NA	NA	NA
SOP95575.1\|605839_606229_+	chemotaxis protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
SOP95577.1\|606209_606548_+	hypothetical protein	A0A059VJW1	Pseudomonas_phage	1.2e-19	59.2
SOP95579.1\|606593_607184_+	hypothetical protein	B5TK65	Pseudomonas_phage	7.0e-52	52.0
SOP95580.1\|607180_607369_+	hypothetical protein	B5TK66	Pseudomonas_phage	1.8e-14	73.5
SOP95582.1\|607387_608884_+\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	3.2e-234	80.3
607990:608005	attR	NA	NA	NA	NA
SOP95585.1\|608944_609292_+\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
SOP95586.1\|609288_609585_+	ArsR family transcriptional regulator	B5TK69	Pseudomonas_phage	4.3e-34	76.0
SOP95588.1\|609595_609691_-	hypothetical protein	NA	NA	NA	NA
SOP95590.1\|609715_611875_+\|tail	tail tape measure protein	U5P420	Shigella_phage	2.6e-72	40.4
SOP95592.1\|611871_613284_+	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	1.8e-109	46.2
SOP95594.1\|613287_614415_+	hypothetical protein	B5TK72	Pseudomonas_phage	2.3e-112	59.9
SOP95596.1\|614411_614924_+	phage assembly protein	B5TK73	Pseudomonas_phage	1.4e-64	73.8
SOP95597.1\|614920_615319_+	hypothetical protein	B5TK74	Pseudomonas_phage	3.4e-42	62.9
SOP95600.1\|615308_616349_+\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	5.4e-132	70.1
SOP95602.1\|616336_616936_+\|tail	phage tail protein	B5TK76	Pseudomonas_phage	7.0e-84	71.9
SOP95604.1\|616946_618806_+\|tail	tail fiber protein	A0A077K818	Ralstonia_phage	1.6e-38	53.7
SOP95606.1\|618805_619324_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
SOP95608.1\|619452_619998_+	Glycoside hydrolase, family 19	A0A2H4JHX4	uncultured_Caudovirales_phage	2.0e-69	73.3
SOP95611.1\|619994_620507_+	hypothetical protein	B5TK84	Pseudomonas_phage	4.7e-28	48.4
SOP95613.1\|620724_620826_-	hypothetical protein	NA	NA	NA	NA
SOP95615.1\|620917_621517_+	Anthranilate synthase component 2	A0A0P0IKJ1	Acinetobacter_phage	3.0e-74	64.7
SOP95618.1\|621526_622588_+	Anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-110	57.7
SOP95619.1\|622584_623421_+	Indole-3-glycerol phosphate synthase	A0A0P0IR83	Acinetobacter_phage	4.4e-68	55.8

DBSCAN-SWA_3

1124679 : 1132604

Bacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOP96471.1\|1124679_1125486_-\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	2.8e-83	57.4
SOP96473.1\|1125515_1126031_-\|transposase	transposase	A0A1B1P776	Bacillus_phage	5.2e-11	32.0
SOP96475.1\|1126934_1127396_+	hypothetical protein	Q56AR5	Bacillus_thuringiensis_phage	5.0e-05	43.3
SOP96477.1\|1127397_1128009_+	Superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.3e-74	67.8
SOP96479.1\|1128195_1128468_-	phosphocarrier protein HPr	NA	NA	NA	NA
SOP96481.1\|1128483_1129341_-	UPF0042 nucleotide-binding protein	A0A0R8VB27	Thermobifida_phage	1.5e-07	30.2
SOP96483.1\|1129343_1129808_-	Nitrogen regulatory protein	NA	NA	NA	NA
SOP96486.1\|1129818_1130127_-	ribosome hibernation promoting factor HPF	NA	NA	NA	NA
SOP96488.1\|1130202_1131672_-	RNA polymerase sigma-54 factor	NA	NA	NA	NA
SOP96490.1\|1131878_1132604_-	Lipopolysaccharide export system ATP-binding protein LptB	A0A2H4PQG7	Staphylococcus_phage	1.7e-23	27.0

DBSCAN-SWA_4

1646257 : 1649926

Bacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOP97406.1\|1646257_1647073_+	Short chain dehydrogenase/reductase (SDR) family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.0e-05	26.3
SOP97408.1\|1647338_1647878_+\|transposase	transposase	A0A1B1P776	Bacillus_phage	2.0e-13	34.8
SOP97410.1\|1647877_1648714_+\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	8.9e-77	52.8
SOP97412.1\|1648944_1649277_+	UPF0060 membrane protein	A0A2H4JF35	uncultured_Caudovirales_phage	5.5e-46	82.6
SOP97415.1\|1649447_1649642_+	hypothetical protein	A0A2I7RT00	Vibrio_phage	2.0e-11	59.6
SOP97417.1\|1649698_1649926_-	hypothetical protein	A0A2H4J8A7	uncultured_Caudovirales_phage	1.2e-31	88.0

DBSCAN-SWA_5

2319186 : 2326928

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOP98548.1\|2319186_2320467_+\|tRNA	Serine-tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	45.8
SOP98550.1\|2320467_2321862_+	Siroheme synthase	NA	NA	NA	NA
SOP98553.1\|2321912_2322911_-	Glutathionyl-hydroquinone reductase YqjG	NA	NA	NA	NA
SOP98555.1\|2323006_2324008_-	hypothetical protein	A0A2H4JBY5	uncultured_Caudovirales_phage	8.8e-164	84.2
SOP98557.1\|2324004_2324340_-	DsrC-like protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.6e-43	77.5
SOP98559.1\|2324336_2324636_-	DsrH like protein	A0A2H4JG28	uncultured_Caudovirales_phage	5.5e-29	61.6
SOP98561.1\|2324635_2324998_-	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	4.8e-35	60.0
SOP98563.1\|2324999_2325392_-	tusD-like sulfurtransferase	A0A2H4JA39	uncultured_Caudovirales_phage	3.7e-57	83.1
SOP98565.1\|2325626_2326928_+	Citrate-proton symporter	Q6JIH2	Burkholderia_virus	4.1e-60	36.0

DBSCAN-SWA_6

2720943 : 2729760

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOP99263.1\|2720943_2722116_-	Methyl-accepting chemotaxis protein NahY	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-54	45.2
SOP99265.1\|2722372_2723356_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.6e-93	55.0
SOP99267.1\|2723491_2723833_-	chemotaxis protein	NA	NA	NA	NA
SOP99270.1\|2723949_2724132_+	hypothetical protein	NA	NA	NA	NA
SOP99272.1\|2724205_2724706_-	hypothetical protein	NA	NA	NA	NA
SOP99274.1\|2724996_2726304_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.5e-120	75.8
SOP99276.1\|2726322_2726625_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.7e-39	92.0
SOP99278.1\|2726656_2726827_-	hypothetical protein	A0A059VK11	Pseudomonas_phage	2.1e-09	90.6
SOP99280.1\|2726857_2727355_+	putative secreted protein	NA	NA	NA	NA
SOP99282.1\|2727391_2727595_-	hypothetical protein	NA	NA	NA	NA
SOP99284.1\|2727795_2727969_-	hypothetical protein	NA	NA	NA	NA
SOP99286.1\|2728073_2728292_+	hypothetical protein	NA	NA	NA	NA
SOP99288.1\|2728448_2728841_+	putative membrane protein	NA	NA	NA	NA
SOP99290.1\|2728947_2729760_-	hypothetical protein	K7ZMK3	Xanthomonas_citri_phage	1.9e-44	39.5

DBSCAN-SWA_7

4122878 : 4211144

Bacillus_virus(13.33%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOQ01508.1\|4122878_4125275_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	2.1e-219	51.9
SOQ01510.1\|4125482_4126766_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.3e-139	59.3
SOQ01512.1\|4126872_4127514_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	4.2e-58	59.1
SOQ01514.1\|4127605_4128916_-	Trigger factor	NA	NA	NA	NA
SOQ01516.1\|4129910_4130402_+	hypothetical protein	NA	NA	NA	NA
SOQ01518.1\|4131232_4132087_+	Bifunctional protein FolD 1	A0A249XZQ2	Enterococcus_phage	7.8e-28	34.5
SOQ01520.1\|4132151_4133957_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
SOQ01522.1\|4134041_4134314_-	membrane protein	NA	NA	NA	NA
SOQ01524.1\|4134326_4135127_-	sugar ABC transporter permease	NA	NA	NA	NA
SOQ01526.1\|4135137_4136004_-	ABC transporter permease	NA	NA	NA	NA
SOQ01528.1\|4135996_4137112_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.7e-17	27.1
SOQ01530.1\|4137111_4138206_-	ABC transporter	G9BWD6	Planktothrix_phage	4.7e-09	26.6
SOQ01532.1\|4138505_4140362_+	Fis family transcriptional regulator	NA	NA	NA	NA
SOQ01534.1\|4140471_4141854_-\|tRNA	Cysteine-tRNA ligase	A0A2K9L6B7	Tupanvirus	1.1e-42	30.7
SOQ01537.1\|4141878_4143573_-\|tRNA	Glutamine-tRNA ligase	A0A222YZ70	Escherichia_phage	1.4e-206	62.3
SOQ01539.1\|4143780_4144284_+	Peptidyl-prolyl cis-trans isomerase cyp18	A0A076FI46	Aureococcus_anophage	3.7e-09	31.5
SOQ01541.1\|4144280_4145027_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
SOQ01543.1\|4145254_4145794_+\|transposase	transposase	A0A1B1P776	Bacillus_phage	2.0e-13	34.8
SOQ01545.1\|4145793_4146630_+\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	1.1e-77	52.8
SOQ01547.1\|4146794_4148333_-	Multidrug export protein EmrB	NA	NA	NA	NA
SOQ01549.1\|4148396_4149605_-	Multidrug export protein EmrA	NA	NA	NA	NA
SOQ01551.1\|4149677_4150166_-	MarR family transcriptional regulator	NA	NA	NA	NA
SOQ01553.1\|4150316_4150928_-\|tRNA	tRNA-hydroxylase	NA	NA	NA	NA
SOQ01555.1\|4151012_4151483_-	Fe-S protein	NA	NA	NA	NA
SOQ01557.1\|4151870_4154486_+	Aconitate hydratase 2	NA	NA	NA	NA
SOQ01559.1\|4154765_4155338_+	putative manganese efflux pump MntP	NA	NA	NA	NA
SOQ01561.1\|4155424_4160281_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA
SOQ01563.1\|4160648_4161008_+	hypothetical protein	NA	NA	NA	NA
SOQ01565.1\|4161055_4161802_+	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA
SOQ01568.1\|4162011_4162971_+	ATPase AAA	NA	NA	NA	NA
SOQ01570.1\|4162975_4163920_+	hypothetical protein	NA	NA	NA	NA
SOQ01572.1\|4163916_4164411_+	hypothetical protein	NA	NA	NA	NA
SOQ01574.1\|4164403_4165462_+	von Willebrand factor, type A	NA	NA	NA	NA
SOQ01576.1\|4165458_4167177_+	membrane protein	NA	NA	NA	NA
SOQ01578.1\|4167173_4168832_+	hypothetical protein	NA	NA	NA	NA
SOQ01580.1\|4168874_4170119_+	exonuclease SbcD	NA	NA	NA	NA
SOQ01582.1\|4170115_4173760_+	chromosome segregation protein SMC	A0A1D7SBA6	Synechococcus_phage	9.5e-06	28.1
SOQ01583.1\|4174199_4174382_-	hypothetical protein	NA	NA	NA	NA
SOQ01585.1\|4174557_4175730_-	3-carboxymuconate cyclase	NA	NA	NA	NA
SOQ01587.1\|4175808_4176096_-	hypothetical protein	NA	NA	NA	NA
SOQ01589.1\|4176231_4177224_-	sugar transporter	NA	NA	NA	NA
SOQ01591.1\|4177259_4178573_-	putative tartrate transporter	NA	NA	NA	NA
SOQ01594.1\|4178787_4180530_+	L-arabonate dehydratase	NA	NA	NA	NA
SOQ01596.1\|4180688_4181339_+	GntR family transcriptional regulator	NA	NA	NA	NA
SOQ01598.1\|4181358_4182594_-	MFS transporter	NA	NA	NA	NA
SOQ01600.1\|4182666_4195233_-	thioester reductase	D0R7J2	Paenibacillus_phage	2.0e-55	34.7
SOQ01603.1\|4195343_4199312_-	thioester reductase	A0A2K9KZV5	Tupanvirus	2.9e-56	27.1
SOQ01604.1\|4199533_4200586_+	fatty acid desaturase	NA	NA	NA	NA
SOQ01606.1\|4200737_4201451_-	LuxR family transcriptional regulator	NA	NA	NA	NA
SOQ01609.1\|4201887_4204278_-	RND transporter	NA	NA	NA	NA
SOQ01611.1\|4204305_4205352_-	hypothetical protein	NA	NA	NA	NA
SOQ01613.1\|4205585_4206941_-	hypothetical protein	NA	NA	NA	NA
SOQ01615.1\|4207457_4208615_-	putative acid-amine ligase YjfC	A0A219Y9C1	Aeromonas_phage	3.5e-63	37.8
SOQ01617.1\|4208626_4209373_-	hypothetical protein	NA	NA	NA	NA
SOQ01619.1\|4209400_4209826_-	putative membrane protein	NA	NA	NA	NA
SOQ01621.1\|4209839_4210505_-	hypothetical protein	NA	NA	NA	NA
SOQ01623.1\|4210589_4211144_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_8

5472929 : 5485713

Bacillus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOQ03889.1\|5472929_5474393_+	UPF0061 protein	A0A075BSJ0	Microcystis_phage	1.3e-62	36.8
SOQ03891.1\|5474551_5475358_-\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	9.5e-84	58.6
SOQ03893.1\|5475387_5475903_-\|transposase	transposase	A0A1B1P776	Bacillus_phage	5.2e-11	32.0
SOQ03895.1\|5476211_5476682_-	chemotaxis protein	NA	NA	NA	NA
SOQ03897.1\|5476674_5482653_-	sensor histidine kinase	W8CYM9	Bacillus_phage	5.0e-12	33.9
SOQ03899.1\|5482700_5484743_-	Protein PilJ	A0A2H4J162	uncultured_Caudovirales_phage	2.8e-15	45.8
SOQ03901.1\|5484793_5485333_-	Protein PilI	NA	NA	NA	NA
SOQ03903.1\|5485347_5485713_-	Protein PilH	W8CYM9	Bacillus_phage	8.8e-13	37.6

DBSCAN-SWA_9

5735903 : 5784439

Bacillus_phage(22.22%)

tRNA,protease,transposase,integrase

attL 5773783:5773827|attR 5778770:5778814

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOQ04364.1\|5735903_5736359_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
SOQ04366.1\|5736472_5737891_+\|transposase	transposase	NA	NA	NA	NA
SOQ04368.1\|5738019_5738508_-	Protein-export protein SecB	NA	NA	NA	NA
SOQ04371.1\|5738548_5738800_-	glutaredoxin	V9QKN6	Rhizobium_phage	1.8e-12	39.7
SOQ04372.1\|5738802_5739216_-	sulfurtransferase	NA	NA	NA	NA
SOQ04374.1\|5739372_5740905_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
SOQ04377.1\|5740949_5742383_+	peptidase M23	NA	NA	NA	NA
SOQ04379.1\|5742416_5743754_+\|protease	Carboxy-terminal-processing protease	A0A0R6PIZ1	Moraxella_phage	1.0e-26	29.8
SOQ04381.1\|5743757_5744540_+	hypothetical protein	NA	NA	NA	NA
SOQ04383.1\|5744574_5744664_-	hypothetical protein	NA	NA	NA	NA
SOQ04385.1\|5744950_5746615_+	peptidase M60	NA	NA	NA	NA
SOQ04387.1\|5746812_5748315_+	trypsin	NA	NA	NA	NA
SOQ04390.1\|5748319_5749075_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
SOQ04392.1\|5749260_5750094_-	Imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
SOQ04394.1\|5750050_5750788_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	NA	NA	NA	NA
SOQ04396.1\|5750894_5751173_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	NA	NA	NA	NA
SOQ04398.1\|5751159_5751798_-	Imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
SOQ04400.1\|5751797_5752391_-	Imidazoleglycerol-phosphate dehydratase	NA	NA	NA	NA
SOQ04402.1\|5752484_5753684_-	Aromatic-amino-acid aminotransferase	NA	NA	NA	NA
SOQ04404.1\|5753900_5755562_-	MFS transporter	NA	NA	NA	NA
SOQ04406.1\|5756060_5758286_+	cell envelope biogenesis protein AsmA	NA	NA	NA	NA
SOQ04408.1\|5758379_5759447_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
SOQ04411.1\|5759443_5759716_+	putative Fe(2+)-trafficking protein	NA	NA	NA	NA
SOQ04413.1\|5760541_5760928_+	hypothetical protein	NA	NA	NA	NA
SOQ04415.1\|5760920_5761823_+	hypothetical protein	NA	NA	NA	NA
SOQ04417.1\|5762089_5762368_+	putative secreted protein	NA	NA	NA	NA
SOQ04419.1\|5762680_5764027_+	Biofilm dispersion protein BdlA	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-20	41.9
SOQ04421.1\|5764170_5764656_+	hypothetical protein	NA	NA	NA	NA
SOQ04423.1\|5764713_5766105_-	GABA permease	NA	NA	NA	NA
SOQ04426.1\|5766629_5767403_+	Arginine/ornithine transport ATP-binding protein AotP	G3M9Y6	Bacillus_virus	3.9e-18	31.1
SOQ04428.1\|5767416_5768181_+	amino acid ABC transporter	NA	NA	NA	NA
SOQ04430.1\|5768247_5768943_+	amino acid ABC transporter permease	NA	NA	NA	NA
SOQ04432.1\|5768939_5769629_+	Octopine transport system permease protein OccM	NA	NA	NA	NA
SOQ04434.1\|5769630_5770902_+	SAM-dependent methyltransferase	NA	NA	NA	NA
SOQ04436.1\|5771198_5771525_-	hypothetical protein	NA	NA	NA	NA
SOQ04438.1\|5771967_5772993_-	molecular chaperone DnaJ	F2Y2Y5	Organic_Lake_phycodnavirus	1.1e-07	45.9
5773783:5773827	attL	NA	NA	NA	NA
SOQ04440.1\|5775120_5775255_+	hypothetical protein	NA	NA	NA	NA
SOQ04442.1\|5775730_5775823_-	hypothetical protein	NA	NA	NA	NA
SOQ04444.1\|5776359_5777187_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	8.6e-56	41.8
SOQ04446.1\|5777420_5778224_+\|protease	Cysteine protease avirulence protein AvrPphB	NA	NA	NA	NA
SOQ04448.1\|5778945_5779161_+	hypothetical protein	NA	NA	NA	NA
5778770:5778814	attR	NA	NA	NA	NA
SOQ04451.1\|5779569_5780553_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.6e-93	55.0
SOQ04453.1\|5781242_5781923_+	hypothetical protein	NA	NA	NA	NA
SOQ04455.1\|5781932_5782661_+	hypothetical protein	NA	NA	NA	NA
SOQ04457.1\|5782989_5783103_+	hypothetical protein	NA	NA	NA	NA
SOQ04459.1\|5783063_5783603_+\|transposase	transposase	A0A1B1P776	Bacillus_phage	4.5e-13	34.8
SOQ04461.1\|5783602_5784439_+\|transposase	putative transposase InsK for insertion sequence element IS150	A0A1B1P773	Bacillus_phage	4.7e-78	53.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LT962481

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection