CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 genome assembly, plasmid: PP1	0 crisprs	NA	2
LT963394	Pseudomonas syringae pv. cerasicola isolate CFBP6109 genome assembly, plasmid: PP3	0 crisprs	NA	1
LT963391	Pseudomonas syringae pv. cerasicola isolate CFBP6109 genome assembly, chromosome: 1	3 crisprs	csa3,DEDDh,cas3,DinG,PD-DExK,PrimPol	15
LT963393	Pseudomonas syringae pv. cerasicola isolate CFBP6109 genome assembly, plasmid: PP2	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8800 : 50171

Enterobacteria_phage(50.0%)

transposase,integrase

attL 42299:42330|attR 49098:49129

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS31024.1\|8800_9124_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS31025.1\|9143_9779_+	hypothetical protein	NA	NA	NA	NA
SOS31026.1\|9825_10053_+	hypothetical protein	NA	NA	NA	NA
SOS31027.1\|10450_11797_+	replication protein	NA	NA	NA	NA
SOS31028.1\|11809_12133_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS31029.1\|12129_13032_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS31030.1\|13111_14917_+	Transposase for transposon Tn3926	A0A1B0V7H9	Salmonella_phage	7.9e-264	75.5
SOS31031.1\|15354_15930_+	hypothetical protein	NA	NA	NA	NA
SOS31032.1\|16238_16454_+	hypothetical protein	NA	NA	NA	NA
SOS31033.1\|16498_17236_+	plasmid partitioning protein ParA	NA	NA	NA	NA
SOS31034.1\|17306_18275_+	partitioning protein, ParB	S5VTK0	Leptospira_phage	9.5e-06	32.1
SOS31035.1\|18281_18422_+	hypothetical protein	NA	NA	NA	NA
SOS31036.1\|18461_19445_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.2e-93	55.3
SOS31037.1\|19867_20191_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS31038.1\|20187_21090_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS31039.1\|21169_22975_+	Transposase for transposon Tn3926	A0A1B0V7H9	Salmonella_phage	7.9e-264	75.5
SOS31040.1\|23412_23988_+	hypothetical protein	NA	NA	NA	NA
SOS31041.1\|24296_24512_+	hypothetical protein	NA	NA	NA	NA
SOS31042.1\|24556_25294_+	plasmid partitioning protein ParA	NA	NA	NA	NA
SOS31043.1\|25364_26333_+	partitioning protein, ParB	S5VTK0	Leptospira_phage	9.5e-06	32.1
SOS31044.1\|26339_26480_+	hypothetical protein	NA	NA	NA	NA
SOS31045.1\|26519_27503_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.2e-93	55.3
SOS31046.1\|27925_28249_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS31047.1\|28245_29148_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS31048.1\|29149_30091_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	1.5e-88	56.9
SOS31049.1\|30374_31352_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS31050.1\|32067_33225_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
SOS31051.1\|33206_35873_-	histidinol phosphatase	A0A1B1IUG5	uncultured_Mediterranean_phage	9.3e-19	21.2
SOS31052.1\|35967_36870_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS31053.1\|36866_37190_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS31054.1\|37735_38008_-	putative arylsulfatase regulatory protein	NA	NA	NA	NA
SOS31055.1\|38394_39297_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS31056.1\|39293_39617_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS31057.1\|40437_40623_+	hypothetical protein	NA	NA	NA	NA
SOS31058.1\|40622_40733_+	hypothetical protein	NA	NA	NA	NA
SOS31059.1\|40773_41751_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
42299:42330	attL	NA	NA	NA	NA
SOS31060.1\|42606_43449_+	type III effector	NA	NA	NA	NA
SOS31061.1\|43551_44529_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS31062.1\|45081_45354_+	hypothetical protein	NA	NA	NA	NA
SOS31063.1\|45400_45673_-	hypothetical protein	NA	NA	NA	NA
SOS31064.1\|45801_46215_-	hypothetical protein	NA	NA	NA	NA
SOS31065.1\|46417_47365_+\|integrase	integrase	A0A0U4IA68	Gordonia_phage	1.4e-14	28.7
SOS31066.1\|47457_47739_+	hypothetical protein	NA	NA	NA	NA
SOS31067.1\|47740_48949_+	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS31068.1\|49121_49298_-	hypothetical protein	NA	NA	NA	NA
49098:49129	attR	NA	NA	NA	NA
SOS31069.1\|49297_49483_-	hypothetical protein	NA	NA	NA	NA
SOS31070.1\|49847_50171_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7

DBSCAN-SWA_2

55576 : 106495

Burkholderia_phage(38.89%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS31081.1\|55576_55864_-	hypothetical protein	U5P429	Shigella_phage	6.0e-17	57.4
SOS31082.1\|56300_56594_+	hypothetical protein	NA	NA	NA	NA
SOS31083.1\|56645_57182_+	molecular chaperone DnaK	NA	NA	NA	NA
SOS31084.1\|58754_59162_-\|transposase	transposase	E5E3P6	Burkholderia_phage	1.4e-27	52.6
SOS31085.1\|59133_59646_-\|transposase	transposase	E5E3P6	Burkholderia_phage	6.5e-46	57.1
SOS31086.1\|59891_60266_+\|transposase	transposase	Q38213	Escherichia_phage	4.2e-26	54.7
SOS31087.1\|60237_60876_+	Transposase InsH for insertion sequence element IS5H	A0A077K814	Ralstonia_phage	1.9e-58	58.0
SOS31088.1\|61011_61521_-	putative isopentenyl-diphosphate delta-isomerase, type 1	NA	NA	NA	NA
SOS31089.1\|61732_61945_-	hypothetical protein	E5E3P6	Burkholderia_phage	4.6e-14	63.9
SOS31090.1\|62109_62487_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS31091.1\|62483_62846_-	DNA topoisomerase III	NA	NA	NA	NA
SOS31092.1\|62941_63925_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	8.0e-93	55.0
SOS31093.1\|64238_65216_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS31094.1\|65361_65472_-	hypothetical protein	NA	NA	NA	NA
SOS31095.1\|65490_66036_-	hypothetical protein	NA	NA	NA	NA
SOS31096.1\|66666_67584_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	1.8e-75	57.4
SOS31097.1\|67755_67947_-	hypothetical protein	NA	NA	NA	NA
SOS31098.1\|68044_68773_-	endonuclease DDE	NA	NA	NA	NA
SOS31099.1\|68788_68914_+	putative membrane protein	NA	NA	NA	NA
SOS31100.1\|69010_69154_+	hypothetical protein	NA	NA	NA	NA
SOS31101.1\|69621_70050_+	gntR transcriptional regulator	NA	NA	NA	NA
SOS31102.1\|70129_70357_+	hypothetical protein	NA	NA	NA	NA
SOS31103.1\|70754_72074_+	replication initiator protein	NA	NA	NA	NA
SOS31104.1\|72338_73547_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS31105.1\|73548_73830_-	hypothetical protein	NA	NA	NA	NA
SOS31106.1\|74111_74408_-\|transposase	transposase	NA	NA	NA	NA
SOS31107.1\|74374_74803_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS31108.1\|75525_76035_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.3e-17	39.5
SOS31109.1\|76177_76792_-	type III effector	NA	NA	NA	NA
SOS31110.1\|77170_78154_-	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.2e-93	55.3
SOS31111.1\|78207_78453_-	hypothetical protein	NA	NA	NA	NA
SOS31112.1\|78636_79365_-	endonuclease DDE	NA	NA	NA	NA
SOS31113.1\|79380_79506_+	putative membrane protein	NA	NA	NA	NA
SOS31114.1\|79602_79746_+	hypothetical protein	NA	NA	NA	NA
SOS31115.1\|80040_80280_+	hypothetical protein	NA	NA	NA	NA
SOS31116.1\|80279_80699_+	twitching motility protein PilT	NA	NA	NA	NA
SOS31117.1\|81720_82248_+	hypothetical protein	NA	NA	NA	NA
SOS31118.1\|83388_85041_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-60	42.6
SOS31119.1\|85239_85860_+	resolvase	NA	NA	NA	NA
SOS31120.1\|86129_86273_-	hypothetical protein	NA	NA	NA	NA
SOS31121.1\|86510_87239_+	endonuclease DDE	NA	NA	NA	NA
SOS31122.1\|87358_88336_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS31123.1\|88676_90044_-	propionyl-CoA carboxylase	NA	NA	NA	NA
SOS31124.1\|90122_91463_-	Indoleacetamide hydrolase	NA	NA	NA	NA
SOS31125.1\|91500_93174_-	Tryptophan 2-monooxygenase	NA	NA	NA	NA
SOS31126.1\|93831_94809_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS31127.1\|94963_95977_+	Protein UmuC	I6RSM4	Salmonella_phage	1.6e-72	43.5
SOS31128.1\|96089_96992_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS31129.1\|96988_97312_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS31130.1\|97500_97755_+	hypothetical protein	NA	NA	NA	NA
SOS31131.1\|97751_98540_+	Type IV secretion system protein VirB8	NA	NA	NA	NA
SOS31132.1\|98529_99339_+	Forms the bulk of type IV secretion complex that spans outer membrane and periplasm (VirB9)	NA	NA	NA	NA
SOS31133.1\|99325_100705_+	conjugal transfer protein	NA	NA	NA	NA
SOS31134.1\|100714_101770_+	conjugal transfer protein	NA	NA	NA	NA
SOS31135.1\|101783_102170_+	hypothetical protein	NA	NA	NA	NA
SOS31136.1\|102154_102520_+	hypothetical protein	NA	NA	NA	NA
SOS31137.1\|102593_102884_+	hypothetical protein	NA	NA	NA	NA
SOS31138.1\|102880_103174_+	hypothetical protein	NA	NA	NA	NA
SOS31139.1\|103220_103523_+	hypothetical protein	NA	NA	NA	NA
SOS31140.1\|103522_105184_+	conjugal transfer protein	NA	NA	NA	NA
SOS31141.1\|105224_105587_+	IncN plasmid killer protein	NA	NA	NA	NA
SOS31142.1\|105614_105896_+	DNA topoisomerase III	NA	NA	NA	NA
SOS31143.1\|106171_106495_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LT963394

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

44295 : 51344

Burkholderia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS31299.1\|44295_45585_-	Transposase for insertion sequence element IS801	B5TA87	Burkholderia_phage	1.3e-10	40.0
SOS31300.1\|45959_46610_+	partition protein parA	A0A0K1LMB9	Rhodobacter_phage	4.9e-30	39.3
SOS31301.1\|46690_46981_+	hypothetical protein	NA	NA	NA	NA
SOS31302.1\|47279_48251_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.6e-93	55.6
SOS31303.1\|48263_48587_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS31304.1\|48583_49486_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS31305.1\|50366_51344_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. LT963391

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LT963391_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT963391_1

3871479-3871590

Orphan

Consensus_repeat	Method
TCTGCGTCCTCTTTGCGACGCAGAGCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT963391_1

>merge|LT963391|1|3871479-3871590|CRISPRCasFinder
TCTGCGTCCTCTTTGCGACGCAGAGCGTCGAGAACTGCATTCCCACGCTGGAGCGTGCGGAACGATCATCAACTATCGCCCTTCTGCGTCCTCTTTGCGATGCAGAGCGTCG

>LT963391|1|1|3871479-3871590|CRISPRCasFinder
TCTGCGTCCTCTTTGCGACGCAGAGCGTCG	AGAACTGCATTCCCACGCTGGAGCGTGCGGAACGATCATCAACTATCGCCCT
TCTGCGTCCTCTTTGCGATGCAGAGCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
LT963391.1\|SOS19366.1\|3874479_3875649_-\|Tellurium-resistance-protein-TerA	unknown	unknown	gnl\|CDD\|226595
LT963391.1\|SOS19359.1\|3868061_3868910_+\|Nicotinate-nucleotide-pyrophosphorylase-[carboxylating]	unknown	unknown	gnl\|CDD\|180230
LT963391.1\|SOS19358.1\|3865454_3867710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377917
LT963391.1\|SOS19351.1\|3857883_3858825_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|238570
LT963391.1\|SOS19357.1\|3864724_3865273_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
LT963391.1\|SOS19363.1\|3872314_3872890_-\|Tellurium-resistance-protein-TerD	unknown	unknown	gnl\|CDD\|376767
LT963391.1\|SOS19372.1\|3879070_3879829_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319822
LT963391.1\|SOS19367.1\|3875645_3876239_-\|Tellurium-resistance-protein-TerZ	unknown	unknown	gnl\|CDD\|225192
LT963391.1\|SOS19364.1\|3872917_3873952_-\|Tellurium-resistance-protein-TerC	unknown	unknown	gnl\|CDD\|274743
LT963391.1\|SOS19369.1\|3876286_3877033_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
LT963391.1\|SOS19362.1\|3871698_3872277_-\|Tellurium-resistance-protein-TerE	unknown	unknown	gnl\|CDD\|376767
LT963391.1\|SOS19355.1\|3863044_3863839_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
LT963391.1\|SOS19361.1\|3870105_3871347_+\|tellurium-resistance-protein	unknown	unknown	gnl\|CDD\|378410
LT963391.1\|SOS19370.1\|3877033_3877984_-\|citrate-lyase	unknown	unknown	gnl\|CDD\|379744
LT963391.1\|SOS19353.1\|3862046_3863042_+\|Catabolite-repressor/activator	unknown	unknown	gnl\|CDD\|236897
LT963391.1\|SOS19371.1\|3877983_3879078_-\|Cysteine-protease-StiP	unknown	unknown	gnl\|CDD\|378594
LT963391.1\|SOS19360.1\|3868968_3870045_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376704
LT963391.1\|SOS19365.1\|3873978_3874428_-\|tellurium-resistance-protein-TerB	unknown	unknown	gnl\|CDD\|226316
LT963391.1\|SOS19356.1\|3863872_3864709_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226248
LT963391.1\|SOS19352.1\|3858824_3861692_-\|PTS-fructose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|224006

Protein	Function_ID	Function_description	E-value
LT963391.1\|SOS19366.1\|3874479_3875649_-\|Tellurium-resistance-protein-TerA	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	3.89918e-93
LT963391.1\|SOS19359.1\|3868061_3868910_+\|Nicotinate-nucleotide-pyrophosphorylase-[carboxylating]	gnl\|CDD\|180230	PRK05742, PRK05742, carboxylating nicotinate-nucleotide diphosphorylase.	0
LT963391.1\|SOS19358.1\|3865454_3867710_-\|hypothetical-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
LT963391.1\|SOS19351.1\|3857883_3858825_-\|1-phosphofructokinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	4.16743e-119
LT963391.1\|SOS19357.1\|3864724_3865273_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	1.13665e-129
LT963391.1\|SOS19363.1\|3872314_3872890_-\|Tellurium-resistance-protein-TerD	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	6.4952e-119
LT963391.1\|SOS19372.1\|3879070_3879829_-\|hypothetical-protein	gnl\|CDD\|319822	cd07520, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.12144e-54
LT963391.1\|SOS19367.1\|3875645_3876239_-\|Tellurium-resistance-protein-TerZ	gnl\|CDD\|225192	COG2310, TerZ, Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms].	1.84464e-64
LT963391.1\|SOS19364.1\|3872917_3873952_-\|Tellurium-resistance-protein-TerC	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	5.96207e-114
LT963391.1\|SOS19369.1\|3876286_3877033_-\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.51856e-40
LT963391.1\|SOS19362.1\|3871698_3872277_-\|Tellurium-resistance-protein-TerE	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	2.30162e-111
LT963391.1\|SOS19355.1\|3863044_3863839_+\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	1.5143e-97
LT963391.1\|SOS19361.1\|3870105_3871347_+\|tellurium-resistance-protein	gnl\|CDD\|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	4.72493e-111
LT963391.1\|SOS19370.1\|3877033_3877984_-\|citrate-lyase	gnl\|CDD\|379744	pfam15617, C-C_Bond_Lyase, C-C_Bond_Lyase of the TIM-Barrel fold. This family of TIM-Barrel fold C-C bond lyase is related to citrate-lyase. These genes are found in the biosynthetic operon, with other enzymatic domains, associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	1.22291e-133
LT963391.1\|SOS19353.1\|3862046_3863042_+\|Catabolite-repressor/activator	gnl\|CDD\|236897	PRK11303, PRK11303, catabolite repressor/activator.	0
LT963391.1\|SOS19371.1\|3877983_3879078_-\|Cysteine-protease-StiP	gnl\|CDD\|378594	pfam11202, PRTase_1, Phosphoribosyl transferase (PRTase). This PRTase family is fused to a C-terminal RNA binding Pelota domain, pfam01248. These genes are found in the biosynthetic operon associated with the Ter stress response operon and are predicted to be involved in the biosynthesis of a ribo-nucleoside involved in stress response.	3.78294e-121
LT963391.1\|SOS19360.1\|3868968_3870045_+\|hypothetical-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.50193e-85
LT963391.1\|SOS19365.1\|3873978_3874428_-\|tellurium-resistance-protein-TerB	gnl\|CDD\|226316	COG3793, TerB, Tellurite resistance protein [Inorganic ion transport and metabolism].	3.84672e-37
LT963391.1\|SOS19356.1\|3863872_3864709_-\|membrane-protein	gnl\|CDD\|226248	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms].	2.55959e-54
LT963391.1\|SOS19352.1\|3858824_3861692_-\|PTS-fructose-transporter-subunit-IIA	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0

>LT963391.1|SOS19361.1|3870105_3871347_+|tellurium-resistance-protein
MQITQGQRVPLSSLIQGSDLTLSIAIKSAQVIDYVCFGVDANGKLSDDRYMVFFNQPSSPCNSVKQVNGGDFQLSLAGLPASIERLVFTASIDGAGTMSEIQASHFSIQSQGREVVRGEFSGATFTAEKAIMVADIYRKNGEWRIASNLQGYNAGLDALVVHFGGEVADAPAPPPAAPPRISLEKKIADAAPQLISLAKKAQVSLEKARLTDTKARVGLVLDASGSMNPQYTRGHVQEVVDRLIPLAVHFDDDGALDCWAFGAKPQQLSAVTLSNFQNFIKTDHGGWKDWELGARINDEPKAMRMVIDYYKKSGDKTPVYILFISDGGVHQDREITRLMTEAAKLPIFWQFVGLGGRGYGILEKLDDMGGRVVDNCNFFALDRLDEIPEEKLYDLLMEEFPDWLKAAKGAGIL
>LT963391.1|SOS19360.1|3868968_3870045_+|hypothetical-protein
MEQWFVMNAGRQLGPMDADAARLIARESPGAWCWKQGMPDWQPIYQVAQVRAMKKDGVTPFPDPTPDMIQPKPSGLPAQAASTPAAPAPPAKRPSFTPDPNASGGYGLAQTTDGVDFKLYGAETQFVELELDPGESAVAEAGAMMYKTCDVQMETIFGDGSNQSSGLLGSLFGAGKRMLTGESLFTTVFSQQGSGKGRVAFAAPYPGTILPLNLRDFGGKLICQKDSFLAGAKGVSIGIQFQKKILTGLFGGEGFILQKLEGDGWVFVHMGGTVRKIELAAGESLDVDTGCLAAMTQTVDYDIRMVGGGIKSMLFGGEGVFFARLTGPGTVWLQSLPFSRLAGRMLAAGPAGVGRSER
>LT963391.1|SOS19359.1|3868061_3868910_+|Nicotinate-nucleotide-pyrophosphorylase-[carboxylating]
MPNLRIADLTAEIEANVRRALLEDVGSGDITAQLIPAERLAKATIISRDAAVIAGTAWVDTVFRQLDPRVAVHWQVTDGDRVSANQALFHLEGPARSLLTGERSALNFLQMLSGVATRAQYFADMVSGTQVKLLDTRKTLPGLRLAQKYAVTCGGCHNHRIGLYDTFLIKENHIAACGGIAQAVEAAHRIAPGKPVEVEVESLSELKQALDAGADIIMLDELSLDDMREAVRLTAGRARLEASGGINDDTLRVIAETGVDYISIGAMTKDVKAVDLSMRLSL
>LT963391.1|SOS19358.1|3865454_3867710_-|hypothetical-protein
MPNDEKVVPLSKLLPAQGAGTPLARLPVVLLQVRDKAAQQLKDALQALFDNADDTLFEMADRARSNTDQNIFFEAMRDLRLKRKSIERGFLDKFYESFLALGQYQIHEPVLPTAVSFDKLALVHNDDLEKTVAVDAMVSKVMSRDSLALGQLTARLNVLIPQAIAEDSNPLGPAMLCRFFLDAGRSLGVEIKVKLIILKLFEKYVLANTDHLYSEANQLLIATGVLPDMKALPARRSSDRAAPRNRVSEMSDPAMNEAADKLDKGVQEVFSALQELLLQVRGNLAPRHEPNAEVRPISSRDLLRLLSHLQQYVPSQDTADDFDLRNQLEQLLTRVNVKTGKSRVVGGGDEDVINLIAMLFEFILDDRNLTPSLRALIGRLQIPMLKVAVLDKSFFSRGSHPARRLLNEIATAALGWGSRDDYQRDSLYQRVEQIVQRLLNDFVDDPAIFSELLADFLAFTSDERRRSELLEQRTRDAEEGRARAELARQQVQHELNQRLLGRTLPEVVVRLLQEAWSKVLLLTCLKHGEESSEWQAGLATMDELIWSVEQHDDPQALQRLLELVPGLLKSLRDGLTSAAFDPFATSEFFSQLESLHVQAFQHFSRLQEGGDDAQGGETSLTGAQLVESPPMMAVVEEIVLVTPEERMLNEPTVQLPADDAGLQMVDKLRVGCWVEIQEDEEHKLRCKLTAIVEPTGRYVFVNRTGMKVLEKTRTGLAIEFRRGAVRILDDALLFDRALESVISNLRKLKGA
>LT963391.1|SOS19357.1|3864724_3865273_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MQLDSASGWCDGVQHCPSPNFNARPEGEISLLVIHNISLPPAQFKTGKVQAFFQNQLDSTEHPYFVGIADLRVSAHFLIERDGEVIQFVSCLDRAWHAGVSSFQGREGCNDFSVGIELEGTDEQPFTEAQYHALIELTRQLRQAFVAITPERICGHSDIAPGRKTDPGPFFDWARFQAALLD
>LT963391.1|SOS19356.1|3863872_3864709_-|membrane-protein
MSFLVLLLAVLVEKFSALRQRVQRDGPWLKELARLEASPRTATRPWVMLALLVLVPVLLLQLALTIIGSVAYGWLVLPIHLLVLIYSLGRVDLIAVLGPFRDACRRGDTQAAVHVAGRDMGVQADNGEQLLQGVQGYMLWQAFQSFFAVIFWYFVLGPVAALAYRLLALAAEQGTTPALVERAGQLRHAFEWVPVRLLAASFALVGNFVAVSRVMLHELLNWNISAAQLITRVGCAASEVPPPVIGPQGVTGLDMLWELLVRAAIVWYAGFALWTLLR
>LT963391.1|SOS19355.1|3863044_3863839_+|TatD-family-hydrolase
MTLIDTHTHLDFADFDADRAQVLDSCLSLGVQRIVVLGVYQRNWQRLWELTEANPALHAAFGLHPVYIDEHRTEHLNELADWLTRLQGHPQLCAVGEIGLDYYVEHPDKPRQQKLFEAQLQLASDFNLPALLHVRRSHADVIAALKHHKLKRSGIVHAFAGSREEAREYIKLGFKLGLGGAATWPQALRMHRVIAELPLDSVVLETDSPDMAPAMHPYTRNSPQHLPDICQALADLMKIPSERLAQASTENACELFGWPRTASA
>LT963391.1|SOS19353.1|3862046_3863042_+|Catabolite-repressor/activator
MKLSDIARLAGVSVTTASYVINGKAEQQRISPATVERVKAVVEQHDFRPNPQAAGLRSRHSKTLGFILPDLENPSYARIAKLLEQGARSLGYQLLIASSDDDPVSELQLLQLFRARRCDALLVASCLTPDDDSYRDLQLKGMPIIAIDREMNPEFFCSVVSDDHDASLQLTRSLLQTRPRHIALIGARPELSISRARAAGFEHALDGFTGATIIEHGEAFSRQCGQRLMTEMLQRQGHFPDALITTSYVLLQGVFDVLQSQALQSTQLHLGTFGDTQLLDFLPLPVNAMAQQHQLIADTALQLALAAIEKDTYQPGVHAIARAFKQRIHEV
>LT963391.1|SOS19352.1|3858824_3861692_-|PTS-fructose-transporter-subunit-IIA
MLELTLEQISMARSAVDKTAALKLIADHLVADGLVAEGYLTGLMSREQQGSTFLGQGIAIPHGTPETRDLVVTTGVRLMQFPEGVDWGDGQMVYLAIGIAAKSDEHLRLLQLLTRALGEEDLGQALREARTPEDLLKLLQGAPQELALDAQMISLGVSADDFEELVWRGARLLRKADCVSNGFAAVLQQVEALSLGDGLWWLHSEQTVKRPGLAFVTPDKPIRYLGQPLTGLFCLASLGEAHQALLERLCLLLIEGRGHELGHATNSRAVLEALGGEVPAEWPTQRVQLANAHGLHARPAKILAQLAKEFDGEIRMRVLESGESAVSAKSLSKLLSLGARRGQTLEFIAEPTIANDALPALIAAVEQGLGEEVEPLPVASEAQAAPAPAGVAKPLNAPAAGSVLQAVSASPGIAIGPAHVQVLQSFDYPQQGESVAAERERLHKAIGEVRSDIENLIQRSKSKAIREIFITHQEMLEDPELTNEVEARLNNDESAAAAWATVIETAAVQQEQLQDALLAERAADLRDVGRRVLAQICGVETVAAPDEPYILVMDEVGPSDVARLDPAQVAGILTARGGATAHSAIVARALGIPALVGAGDEVLLLKPGTVLLLDSQRGRLTVSPDEATLQRAAQDRDAREERLKAAAAARMEPAVTRDGHAVEVFANIGDSTGTPAAVEQGAEGVGLLRTELLFMAHSQAPDEATQEAEYRRLLTDLGGRPLVVRTLDVGGDKPLPYWPIAKEENPFLGVRGIRLTLQRPDVMESQLRALLRAADSGPLRIMFPMIGTLEEWRQAREMTERLREEIPVSDLQLGIMIEVPSAALIAPVLAKEVDFFSIGTNDLTQYTMAIDRGHPTLSAQADGLHPSVLQLIDMTVRAAHANGKWVGVCGELAADPLAVPILVGLGVDELSLSARSIGEVKACVRELTLSSAQQLAQNALTAGSAAEVRALVEAV
>LT963391.1|SOS19351.1|3857883_3858825_-|1-phosphofructokinase
MAKILTLTMNPALDLTVQLGQLELGQVNRSNAMLTHAAGKGLNVAQVLADLGHDLTVAGFLGVDNQQAFEALFERRNFVDEFVRVPGETRSNIKLAEGSGRITDLNGPGPQVSEEAQQALFARVQQIASGFDVVVVAGSLPRGVTPEWLHKLLVMLKDLGLKVALDSSGLALRAGLTAGPWLIKPNTEELADALDAPIISIAAQAEVAARLHTQGIEHVVISQGSEGVHWFSPSVALHSLPPKVTVASTVGAGDSLLAGMVHGLISAHEPQKTLRTATAIAAMAVTQIGFGITDAAQLKRLEGGVTVRSLSEQ
>LT963391.1|SOS19362.1|3871698_3872277_-|Tellurium-resistance-protein-TerE
MAVSLSKGGNVSLSKEAPGLTEITVGLGWDPRVTDGTEFDLDASVFIVGESGKVLDDNSFIFYNNKKSADGSVEHLGDNRSGAGDGDDESVNVKLTGLAAAVKKLVFAVTIHSAEERKQSFGQVSNAYIRVVNKADGKEIARYDLSEDASTETAMIFGELYRNGDEFKFKAIGQGFAGGLKPLAEAHGVAIG
>LT963391.1|SOS19363.1|3872314_3872890_-|Tellurium-resistance-protein-TerD
MALTLQKGGNLSLSKTDPTLTNVLIGLGWDPRATDGQEFDLDASAFLLGANGKVRSEADFIFYNQLKSADGSVEHTGDNRTGAGDGDDEVLKVNLTSVPADVDKIVFVVTIHDADSRKQNFGQVGGSFIRVLNEKSSSEIVRYDLAEDASTETAMIFAELYRNNGEWKFRAVGSGFAGGLKAVANSFGMNF
>LT963391.1|SOS19364.1|3872917_3873952_-|Tellurium-resistance-protein-TerC
MESTSLGFPPLTMAVFVGLASTAMAIDMFSHRGNKPITLAQASAWSIFWVAISLAFAGFLYVQHGSEVATLFVTGYALEKVLSVDNLFVFMALFSWFKIPDGLRHRVLYWGIIGAIVFRGIFVAIGTGLLALGPWVEVVFAVIVAWTAIMMLRAGDDDDEEVDYSQHMAYRFAKKLFPVWPKLHGSNFFVRRSVLEEEVKKPENAGITLAAKGALFATPLFLCLVVAEISDVLFAFDSVPAIIAVSREPLIVFSAMLFAILGLRTLYFVLEALKRYLVHLEKAVIALLFFIAIKLGLNATNHLFHHGYEISANTSLLVVVVVLIIGIVASLLFPGKEESAEEKA
>LT963391.1|SOS19365.1|3873978_3874428_-|tellurium-resistance-protein-TerB
MLDWLKTNATAARDKLASEVSKFKNREFMEAVVSGCALVSAADGDISSSEKQKMAGFIQNSQELKVFDTKEVIQGFQEACSKFEFDFEIGRAEALKTIGKIKKKEDAARLLVRVCCAIGGADGSFDEKEREVCRTICRELGLNPSDFDL
>LT963391.1|SOS19366.1|3874479_3875649_-|Tellurium-resistance-protein-TerA
MTQLVPGANAPVAAGPLTVEVSYSPLADADIDVSAFLLTASGKVRGDQDMCFYGQKSVNGGAVQQTEASAGRAVFSLDPSRLDSVIEKVALTATIYENKASFGSVSRLALSITGGIEADIPTSGIKETALILGEFYLRQGAWKFRCVAQGFAGGLEPLAKNFGVEVAAPQDQPAPAPVPAPAPKSTVSLSKITLDKTRASISLEKSSAGFGEIRVNLNWNRRSDSKGGGFFSMKKSNAIDLDVGCLFEMQDGLKGAVQALGNSFGSLNTEPFIKLMGDDRTGSISDGEWLHINGAHWNKIRRILVYAFIYEGAPNWKETDGVVTIHAPGQPPIEVRLNEEGGRQGMCAIALLENDNGAVKVTRRVDFHNGHSNMDKAYGWGMRWAAGSK
>LT963391.1|SOS19367.1|3875645_3876239_-|Tellurium-resistance-protein-TerZ
MALTLAKNQTISLEKTAGTGLKKVSMGLGWDPEKASGFFGKLLGGGGGDIDLDASCIMLDADKKPLDLVWFRQLQSRDGAIQHSGDNRTGEGAGDDETISVDLEKLPAAVKYLVFTVNSFTGQNFEKVANAYCRIVDLGSRNELGRFDLSEKGQHTGVVMSYLARTPAGWDFTAVGQVTNGRTADDLVELAIGAVRA
>LT963391.1|SOS19369.1|3876286_3877033_-|HAD-family-hydrolase
MIEPDLETVEPDLEPVGPDLEIEVEQRLLAVFDFDGTITRHDSFVPFLKFAFGQRAFSVRMARLVLPSIGYLAKRVTRDELKGRLIKAFLSGVEVQWLQQKAEAFCQSHWNRLMRPAALESIAAEIEKGAIVTLCSASPAMVLQPFANRLKVELIGTNLEVIDGKLTGLIEGSNCRCDSKVARLESVYGPLTQFRVRAWGDTRGDHELLAAAQDAHWRLFHPTWRRGRYKGPVNAKLHNPDGNDGPTR
>LT963391.1|SOS19370.1|3877033_3877984_-|citrate-lyase
MALFSPYALGATLYMPATRDDIVDVVFGEKIPELRSLVVCLEDAVALIDVDTALVNLRQVLTRIQDRGGRPANGPLLFVRPRDAAMARILNDWPLMAHVDGFVVPKLSLKSLTSWEQSVTNPALALMPTLETPEVFDPTAMVELGQALKASLYERIIALRIGGNDLMGCLGLRRNPAMTLYSTPMGYVIPMLAGVMGSQGFALTAPVFEQLATPDILEHELALDITNGLVGKTAIHPSQVNIIQNALRVSLEDMNSARMILNSVAPAVFKYNDAMCEPATHYKWATHIMERAKWHGVLSAPASIMDASIRLAEAVS
>LT963391.1|SOS19371.1|3877983_3879078_-|Cysteine-protease-StiP
MSDPVQGLDTVGSGSYLYDDVHFLLRSVAMQATSVAEKERLIQTHQKHYSEMISEESPPSAAHKALYERALSQNGLRMADDVQALAQALDRECTGAEIVLVSFVRAGLPLGVLLRRALIDLHREAHHYGISIVRDRGIDKVALEAIIQAHGAQNIVFVDGWTGKGAISGEIRRSLAGDTRFPKEPRLVVLADPCGSAWLAASAEDWVIPSGILGATVSGLVSRSIWPTDGGLHGCVVYKQLQGHDVTQSFIEHIDSQRRQNSSTLTLTPWTLTQRAGLKDAATQVVDRLAERFDITNFNRIKPGIAEATRAVMRRVPDHVLVRNRADSDVQLLLHLTEKAGIPVEEVGDVLGPYRAVTIIRSLS
>LT963391.1|SOS19372.1|3879070_3879829_-|hypothetical-protein
MSNDRPLIFVDLDDTLFQTARKTPANIEKHVATLDISGNANGYMTNVQKSFAHWLLAHSDVVPVTARSVEAYSRVKLPFTAGAICSHGGVMLDVMGRLDQDWNEQMKNTLASYQSRLHELSAATLAIGEELGFSLRGWVVEEAQLFHYVVTKHNESDDNVLSKVLAEVQARGLLDGMHIHGNGNNLAFLPEGLAKRYAVQEWLRRDKAINGERPVLGFGDSITDLGFMDECHWWATPARSQLAKMFVGAEHE

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Crispr_ID: LT963391_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT963391_2

3896271-3896406

Orphan

Consensus_repeat	Method
ATCGTGCCCATGCTTCGCGTGGGCATGCCCTTCTGGACGCTCTGCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT963391_2

>merge|LT963391|2|3896271-3896406|CRISPRCasFinder
ATCGTGCCCATGCTTCGCGTGGGCATGCCCTTCTGGACGCTCTGCGTTCTCCTTGAATTGACCTGTGCAGCGCAGTCCGCAAGAACACCATCGTGCCCATGCTCCGCGTGGGCATGCCCTTCTGGACGCTCTGCGT

>LT963391|2|2|3896271-3896406|CRISPRCasFinder
ATCGTGCCCATGCTTCGCGTGGGCATGCCCTTCTGGACGCTCTGCGT	TCTCCTTGAATTGACCTGTGCAGCGCAGTCCGCAAGAACACC
ATCGTGCCCATGCTCCGCGTGGGCATGCCCTTCTGGACGCTCTGCGT

Protein	Signature genes	Signature genes Name	Protein_function
LT963391.1\|SOS19396.1\|3898670_3900773_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
LT963391.1\|SOS19399.1\|3903053_3903863_+\|Chemotaxis-protein-methyltransferase	unknown	unknown	gnl\|CDD\|214534
LT963391.1\|SOS19383.1\|3890088_3891306_+\|Type-4-fimbrial-assembly-protein-PilC	unknown	unknown	gnl\|CDD\|224376
LT963391.1\|SOS19391.1\|3894186_3894720_+\|molybdenum-cofactor-sulfurase	unknown	unknown	gnl\|CDD\|225167
LT963391.1\|SOS19384.1\|3891307_3892180_+\|Type-4-prepilin-like-proteins-leader-peptide-processing-enzyme	unknown	unknown	gnl\|CDD\|224900
LT963391.1\|SOS19403.1\|3905631_3907365_+\|DNA-helicase	unknown	unknown	gnl\|CDD\|350799
LT963391.1\|SOS19388.1\|3893203_3893470_-\|hypothetical-protein	unknown	unknown	unknown
LT963391.1\|SOS19392.1\|3894937_3896236_+\|NADH-dehydrogenase	unknown	unknown	gnl\|CDD\|224172
LT963391.1\|SOS19386.1\|3892796_3893006_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234754
LT963391.1\|SOS19402.1\|3904355_3905432_+\|Chemotaxis-response-regulator-protein-glutamate-methylesterase-1	unknown	unknown	gnl\|CDD\|234828
LT963391.1\|SOS19387.1\|3893057_3893213_+\|hypothetical-protein	unknown	unknown	unknown
LT963391.1\|SOS19382.1\|3888391_3890086_+\|Type-4-fimbrial-assembly-protein-PilB	unknown	unknown	gnl\|CDD\|274186
LT963391.1\|SOS19398.1\|3902504_3903044_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
LT963391.1\|SOS19397.1\|3900798_3902454_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
LT963391.1\|SOS19385.1\|3892176_3892800_+\|Dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
LT963391.1\|SOS19395.1\|3898333_3898624_+\|sulfate-transporter	unknown	unknown	gnl\|CDD\|132914
LT963391.1\|SOS19400.1\|3903859_3904393_+\|putative-chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237400
LT963391.1\|SOS19394.1\|3897941_3898310_+\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|381110
LT963391.1\|SOS19389.1\|3893560_3894190_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285845
LT963391.1\|SOS19393.1\|3896714_3897932_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599

Protein	Function_ID	Function_description	E-value
LT963391.1\|SOS19396.1\|3898670_3900773_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
LT963391.1\|SOS19399.1\|3903053_3903863_+\|Chemotaxis-protein-methyltransferase	gnl\|CDD\|214534	smart00138, MeTrc, Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.	3.91633e-87
LT963391.1\|SOS19383.1\|3890088_3891306_+\|Type-4-fimbrial-assembly-protein-PilC	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	7.09457e-149
LT963391.1\|SOS19391.1\|3894186_3894720_+\|molybdenum-cofactor-sulfurase	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	2.10829e-28
LT963391.1\|SOS19384.1\|3891307_3892180_+\|Type-4-prepilin-like-proteins-leader-peptide-processing-enzyme	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.00632e-60
LT963391.1\|SOS19403.1\|3905631_3907365_+\|DNA-helicase	gnl\|CDD\|350799	cd18041, DEXXQc_DNA2, DEXXQ-box helicase domain of DNA2. DNA2 (DNA Replication Helicase/Nuclease 2) possesses different enzymatic activities, such as single-stranded DNA (ssDNA)-dependent ATPase, 5-3 helicase, and endonuclease activities, and is involved in DNA replication and DNA repair in the nucleus and mitochondrion. It is involved in Okazaki fragment processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. It is also involved in 5-end resection of DNA during double-strand break (DSB) repair; it is recruited by BLM and mediates the cleavage of 5-ssDNA, while the 3-ssDNA cleavage is prevented by the presence of RPA. DNA2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.324e-42
LT963391.1\|SOS19398.1\|3902504_3903044_+\|chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.28882e-41
LT963391.1\|SOS19392.1\|3894937_3896236_+\|NADH-dehydrogenase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	2.63867e-149
LT963391.1\|SOS19386.1\|3892796_3893006_+\|hypothetical-protein	gnl\|CDD\|234754	PRK00418, PRK00418, DNA gyrase inhibitor YacG.	9.4983e-32
LT963391.1\|SOS19402.1\|3904355_3905432_+\|Chemotaxis-response-regulator-protein-glutamate-methylesterase-1	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
LT963391.1\|SOS19400.1\|3903859_3904393_+\|putative-chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237400	PRK13498, PRK13498, chemoreceptor glutamine deamidase CheD; Provisional.	4.31883e-103
LT963391.1\|SOS19382.1\|3888391_3890086_+\|Type-4-fimbrial-assembly-protein-PilB	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
LT963391.1\|SOS19397.1\|3900798_3902454_+\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	4.71294e-64
LT963391.1\|SOS19385.1\|3892176_3892800_+\|Dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	2.79287e-90
LT963391.1\|SOS19395.1\|3898333_3898624_+\|sulfate-transporter	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.90088e-15
LT963391.1\|SOS19394.1\|3897941_3898310_+\|chemotaxis-protein-CheY	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.0658e-62
LT963391.1\|SOS19389.1\|3893560_3894190_+\|hypothetical-protein	gnl\|CDD\|285845	pfam08682, DUF1780, Putative endonuclease, protein of unknown function (DUF1780). This is a family of uncharacterized proteins. The structure of a hypothetical protein from Pseudomonas aeruginosa has shown it to adopt an alpha/beta fold, placing it in the Endonuclease superfamily/clan of restriction endonucleases.	1.17666e-126
LT963391.1\|SOS19393.1\|3896714_3897932_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	4.85478e-21

>LT963391.1|SOS19392.1|3894937_3896236_+|NADH-dehydrogenase
MTHRIVIVGGGAGGLELATSLGKTLGKKGTASVTLVDANLTHIWKPLLHEVAAGSLNSYEDELNYVAQAKWNHFQFQLGRMTGLDRASRQIHLAETLDENGAELVPARSLGYDSLVIAVGSTTNDFGTTGAAEHCLFLDSRKQAERFHQQLLNHYLRAHAGQADSAQEITVAIVGAGATGVELAAELHNAAHELAAYGLGQIKPENLRITVIEAGPRVLPALPERIGAPVHKTLEKLGVTVLTNAAVSEVTANGLITASGQVIPASLKVWAAGIRAPAFLHELDGLESNRINQLQVLPTLQTTRDENIFAFGDCAACPQKGTDRNVPPRAQAAHQQASLLAKSLRLRIEGKTLPEYTYKDYGSLISLSSFSAVGNLMGNLMGSVMLEGWLARMFYVSLYRMHQMALYGTFRTLMLMLGSKIGKGTEPRMKLH
>LT963391.1|SOS19391.1|3894186_3894720_+|molybdenum-cofactor-sulfurase
MSPLQELLADVPQQGRVRWIGVRPESRVEMIELDAVEARREAGLTGDHSRPGPRNARQVTLIQWEHLAVVGSLLNRSADNPIVPQDLRRNLVISGINLFSLKNRRFRIGQAIFETTGWCQPCARLEQRLGRGTFQAVRGHGGITARVLQSGIIRLDDVLQVEPLEITDPWPPARQHA
>LT963391.1|SOS19389.1|3893560_3894190_+|hypothetical-protein
MDDSDYLRLLTIQAEQANAFLSNARKWERERWVCQRLLQGLNIAHRNEDFTPATEEPPDVLFRDGRFEVFFVLDEGRRLNDEWREELARRRSAFSLSQLVRREAKPKRIPASELLHRLAPTLRKKSTNYRERGIDLGGLDIIAFASLKREVLDLNSHFPPPTEYLRQGWRSLSLVGPTFARVLFAHPGAPDFLRTNLGRSVVFDVGISL
>LT963391.1|SOS19388.1|3893203_3893470_-|hypothetical-protein
MPAGAAFIEDLQKQAKGLSESCHTVFAIPQMRDYRYRVMLDREARIVPQYAGDDDKGLWLQLRDGQLVSQQQFGSADALRAALKKPQP
>LT963391.1|SOS19387.1|3893057_3893213_+|hypothetical-protein
MTIVPMLRVGMQFVTLRVTNLRRSAHSRLDAERPEMHSHAERGNDNDRIYG
>LT963391.1|SOS19386.1|3892796_3893006_+|hypothetical-protein
MSQPMTVQCPTCDAPVEWSAASPSRPFCSERCKLIDLGAWASEEHAIPVSPDAEDELFSGDLEAPHRGH
>LT963391.1|SOS19385.1|3892176_3892800_+|Dephospho-CoA-kinase
MTHPDQKPWILGLTGGIGSGKSAAAQCFTNLGIDTVDADHAARWVVEPGRPALEQIAAHFGKDVLQASGELDRGALRKLIFENPEQRRWLEALLHPLINQEIVSHLAKAKSPYAILVSPLLIESGQYRMVQRLLVIDTPAHLQIERTMLRDSSSREQVEAILKVQIQREDRLRHANDVLVNDRNHAWLNSEVERLHHFYLTLRGGQS
>LT963391.1|SOS19384.1|3891307_3892180_+|Type-4-prepilin-like-proteins-leader-peptide-processing-enzyme
MPLLDFLASSPLAFVTTCCILGLIIGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPAFNLNRPRSSCPHCAHKIRPWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQTAAMLVLSWGLLTMSLIDADHQLLPDSLVLPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGAVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR
>LT963391.1|SOS19383.1|3890088_3891306_+|Type-4-fimbrial-assembly-protein-PilC
MASKAVKVSIYTWEGLDKKGGKLSGELSGHNPALIKAQLRKQGVNPTKVRKKSISIFGKGKKIKPLDIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRTLVVSLKQEVSAGNSFATALRQKPEHFDELFCNLVDAGEQAGALESLLDRVATYKEKTEKLKAKIKKAMTYPTAVLVVAVIVSGILLIKVVPQFQTVFSSFGADLPLFTLMVIALSEFVQQWWLAILGLLFGSFFLFKRTYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVHKVKQDVSTGMQLNFSMRSTGVFPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLVIAMYLPIFKLGSVV
>LT963391.1|SOS19382.1|3888391_3890086_+|Type-4-fimbrial-assembly-protein-PilB
MTDAVLSGLAKQLVLAELLTELAAQQAYQQARREKISLVSYLVQNKLVKSLTLAEMASDQFGIPFMDLSSLEKESQPKGLVSEKLVRQHHALPLWRRGNRLFIGVSDPTNHQAVTDIQFSTGLNTEAILVEDDKLSNAIEKFFETGNGLGEMDDVDLGLDVEQSDGKETSLADQNDADDAPVVRFVNKMLMDAIRLGSSDLHFEPYEKTFRVRLRTDGILHEVAKPPIHLANRIAARLKVMASLDISERRKPQDGRVKLRVSKTKAIDFRMNTLPTLWGEKIVMRILDPTSAQMGIDALGYEPEQKALYLEALKQPQGMILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINLEGVNQVNVNPRQGLDFSQALRAFLRQDPDVIMVGEIRDLETAEIAIKASQTGHMVLSTLHTNSAAETLTRLHHMGVAAFNIATAINLIIAQRLARKLCSHCKKELDIPRETLIKEGFPEAEIGTFKIYGPVGCEHCNGGYRGRVGIYEVVKKTPELERIIMEEGNSLEISRQMRKDGFNDLRTSGLSKAMQGITSLEEVNRVTKD
>LT963391.1|SOS19393.1|3896714_3897932_+|methyl-accepting-chemotaxis-protein
MMSNHSSSNPAQNRPRFIWFSLIPVIPAAAWILTQSGTSTTNLVACAALLAIGLGACALAARTQQNDVHRAVAQALDHHQAHNAQTSAMASHAQLNEVFLGAMPIWAKQVESSRQQTETAIVELSSRFMGISERLQETVQASQHAAGELDGQNADGALKVLSQSDSELSQVIDSLKATQASRDQTLSQVRSLTAYTGELRTMAADVAAIAAQTNLLALNAAIEAARAGEAGRGFAVVADAVRSLSSKSSETGQQMSAKVDIINNAITQLVQAASSGADQDSHSVAASEQSIQNVLERFQSITGRLAESADLLKQESFGIRDEMTEVLVNLQFQDRVSQILAHVRDNIDSLHAHLLQASQSPDEAVAIDARQWLARMESTYATDEQRRTHRGESAAQQNSQEITFF
>LT963391.1|SOS19394.1|3897941_3898310_+|chemotaxis-protein-CheY
MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLTGQKVHLIISDVNIPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLILP
>LT963391.1|SOS19395.1|3898333_3898624_+|sulfate-transporter
MPTPDDNQADATRVQIDGELTIYTVTELAARLLPQITGAARVEVDLSQVTEMDGAGLQLLAVIQREAGKTGTSLRMTGQSKAVTETFELCNPGVVL
>LT963391.1|SOS19396.1|3898670_3900773_+|chemotaxis-protein-CheA
MSINLDQAQQTFIVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSFTHIVEDVLDRLREGSVSVDAGLIAVLLKSGDHMLELIDVVASRGQPLQPPALEREAALRQALQVYQAPGNAQPADEARAPSVIDEQPAEVLWHISLRFGVDVFRNGMDPLSFLRYLNTLGQMVQVTTVTDSIPALEAWDPESCHLGFEIDFRSSAGHAAINEVFDFVREDCAIEITPVNETPDHVEPTGTELVSQTEHSPAVASGELLGDQRAVPRTPAAATAVERPSSASEQKNKDGRYVRVNADKLDELINLVGELVIASAGASLLARSCDNDPLQEASSTVSGLVEQILDGALHLRMIPIGDTFNRFRRVVRDVSQELGKDIDLIINGAETELDKTVVEKIGDPLMHLLRNSMDHGIESAEARRAAGKPAKGHLSLNAYHDSGSIVIEIADDGAGLNRERILDKAQQRGLVAVGASLTDQEIYNLIFEPGFSTAEAVTNLSGRGVGMDVVKRNITLLRGTVDLDSQPGQGTIVRIRLPLTLAIINGFLVGIDQSTYVIPLDMVQECIELDEQNRHLTRDSGYLDLRGEVLPLVYLRDHFNHEGPAARRQNVVVVRYAEHKAGLVVDDLLGEFQTVIKPLGKLFGALRGISGSTILGSGAVALILDIPALLNQIVQMEARSTQAPQALLPTSR
>LT963391.1|SOS19397.1|3900798_3902454_+|chemotaxis-protein
MKWFYDLKISTKLITSFLVVLALTAAMGVFAIIQLGQVNQAAQDIKENWMPSIRAASGMRFYAANFRLKENRHIAADSAQEKAQMELEAAEARKQFETRLATYDKLIVSDQDRQMFSAVSTSWSAYLKVSDNLFALSRQGQEAEARALLRGESKLHFDEVTNQLQKMVELNDAGATAAGDKGTSLYESARISIIAVLVAALLVGLGLALFIARIISRPLKEAATAAEQLAEGNLNAHIGHGSKDETGMVLNAMRNMVGKLSHIIGEVRNAADNLASASEEVSATAQSMSQATSEQAASVEETSASVEQMSASINQNTENAKVTDGMASKAAKEATDGGESVQQTVVAMKKIAQRISIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELSSSSVEMAEKAGKLLDEMVPSINKTSDLVQEISAASEEQAAGVAQINTAMTQLNQVTQQNASSSEELAATAEEMSSQAEQLQQAMSFFTLDASPRAVAQGSPVDGRSSPNRQPPRPPQQAPRKAFAQSMAGAPDESEFTRF
>LT963391.1|SOS19398.1|3902504_3903044_+|chemotaxis-protein-CheW
MGSLVTTRQTATAVEEEAQYLTFMLGGEMFAIGILGIKEIIEYGSLTVVPMMPAFVRGVINLRGAVVPVVDLSARFGRQNSDITRRSCVIIIEASSEDGQPQDIGLLVDNVSAVLEIPASQIEPPPNFGARIRADFISGMAKVDGKFVIVLEFDRVLSIDEMSSLAEASQSLPSDADAT
>LT963391.1|SOS19399.1|3903053_3903863_+|Chemotaxis-protein-methyltransferase
MPDTASLTDREFGQFQAWLYSAAGIKLTLAKKALVAGRLFKRLKHYELDNYGEYFKLIMNDQRNGELQVALDLLTTNETYFFREPKHFDFLRQQVLPKVAPGKVFRVWSAASSSGEEPYSLAMTLAEQLGTTPWEVIGSDISTRVLSKARSGHYPMERTETLPQPLLFKYCLKGVGRQEGTFLIDKSLRSRVSFVQVNLNETLPDLGEFDVIFLRNVMIYFDQETKSKVVARLLPRLKSGGYFIISHSESLNGINDTLKLVSPSIYRKP
>LT963391.1|SOS19400.1|3903859_3904393_+|putative-chemoreceptor-glutamine-deamidase-CheD
MIKPVGVAEIVLAPGEVVFETRPARLRTLLGSCVAITFWHPWRRIGGMCHFMLLGRIRKGQPLDGKYADEAMEMLISHALASGTLPEEYQVKLFGGGEMFPAQRHDQQMHNVADRNINAALKLADRHRLKLMAQDLGSTGHRNIIFDLWNGNVWVRHQPMEAIEKDAKQKNQRIAGR
>LT963391.1|SOS19402.1|3904355_3905432_+|Chemotaxis-response-regulator-protein-glutamate-methylesterase-1
MPNKKISVLLVDDSAVVRQVLVAILNDTPDIHVMGAASDPIFAMAKLAQEWPDVIVLDVEMPRMDGITFLKKIMSERPTPVVICSSLTQKGAETSLQALSAGAVEIITKPTTGLKNFLIDSAAELVAAVRAAANSNVKNLGKRTAPPVLAPASKLTADAILPAANGHAMAHTTERIVAIGTSTGGTQALEAVLTALPRVCPGMVIVQHMPEKFTASFAERLNSLSQIEVREARNNDRILPGLALIAPGGKHMMVTRSGAYYHVQVIDGPLVNRHRPSVDVLFRSVAKFAGKNATGIIMTGMGDDGARGLKEMLDAGSSTVAQDEASCVVFGMPKEAIKLNAAQRIMPLQEIHQAILHR
>LT963391.1|SOS19403.1|3905631_3907365_+|DNA-helicase
MPGQHPLFQKLYEFVYAEQAANLQKLNEVWERPLPEKLLQGWTQGFARLERSEKPGQIWAYLGENESRFRAGDLLRVHLGNAQGPLLCQGMKFEKEEDDRWLLSSGRAMLIWESYQEGVCYADPDGMDLTPKYIQALQDIEIDAQGHNTILPLLGDAPDIGFNDPDVEYGEQIARQEGCNDKQAEAVGLALGAEQIACIQGPPGTGKTRALALIAQLLVARGERVFVTSHTHMAINNALSKIAARNVPTLKVGGRREDLDEHVDLKTDPANWEGFPESGQGYVIGATPFATCSSLSRYSFDTVIFDEASQITVPLALMAMRKGKRFIFIGDQKQLPPVLLSRSILSKESMSVFARLTAQDTDHTVMLEETYRMNRWLTEWPSQMYYDGQLRAAGRNTDRRLRASPDGAVSEALDPQACAVFIATQDSKARNRNPADAQCVVQLCIEAHRLGLPLHEIGIVTPYRAQGRTIRQALAKQFGRPAADTIVADTVERMQGQERELVILSLASGDETFISAIGEFFFQPERLNVSITRAMTKLIIIGPQLKHGIVCASEAAQVWAEQYRQLISQCHKVEFAQ

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Crispr_ID: LT963391_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT963391_3

4803319-4803427

Orphan

Consensus_repeat	Method
CGCGCACCTATCGTTCTTCACGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT963391_3

>merge|LT963391|3|4803319-4803427|CRISPRCasFinder
CGCGCACCTATCGTTCTTCACGCTCCAGCGTGGGGGCGCCGTTCTGGAAGCTTTGCGTCCACTGTTGGGTACGCGGTGCAACACGCGCACCTATCGTTCCTCACGCTCC

>LT963391|3|3|4803319-4803427|CRISPRCasFinder
CGCGCACCTATCGTTCTTCACGCTCC	AGCGTGGGGGCGCCGTTCTGGAAGCTTTGCGTCCACTGTTGGGTACGCGGTGCAACA
CGCGCACCTATCGTTCCTCACGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
LT963391.1\|SOS20785.1\|4794869_4796327_-\|Ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
LT963391.1\|SOS20796.1\|4801783_4803229_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-B	unknown	unknown	gnl\|CDD\|235489
LT963391.1\|SOS20809.1\|4813490_4815596_-\|Polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
LT963391.1\|SOS20787.1\|4796323_4796926_-\|Maf-like-protein	unknown	unknown	gnl\|CDD\|234584
LT963391.1\|SOS20801.1\|4806513_4808088_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
LT963391.1\|SOS20789.1\|4796993_4797485_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
LT963391.1\|SOS20802.1\|4808245_4809262_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224017
LT963391.1\|SOS20806.1\|4812317_4812692_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371338
LT963391.1\|SOS20800.1\|4805466_4806408_-\|malate-transporter	unknown	unknown	gnl\|CDD\|223751
LT963391.1\|SOS20797.1\|4803577_4803946_+\|rplA-family-protein	unknown	unknown	gnl\|CDD\|223868
LT963391.1\|SOS20791.1\|4797477_4798545_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
LT963391.1\|SOS20793.1\|4798776_4799814_-\|Rod-shape-determining-protein-MreB	unknown	unknown	gnl\|CDD\|237562
LT963391.1\|SOS20799.1\|4805086_4805470_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
LT963391.1\|SOS20798.1\|4804023_4805055_+\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|273039
LT963391.1\|SOS20795.1\|4800321_4801773_+\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|234572
LT963391.1\|SOS20784.1\|4790872_4794688_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273971
LT963391.1\|SOS20804.1\|4809340_4812358_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377502
LT963391.1\|SOS20782.1\|4789978_4790824_-\|Nitrilase-like-protein	unknown	unknown	gnl\|CDD\|143596
LT963391.1\|SOS20808.1\|4812830_4813202_-\|phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|225379
LT963391.1\|SOS20794.1\|4800019_4800307_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C	unknown	unknown	gnl\|CDD\|178810

Protein	Function_ID	Function_description	E-value
LT963391.1\|SOS20785.1\|4794869_4796327_-\|Ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
LT963391.1\|SOS20796.1\|4801783_4803229_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-B	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
LT963391.1\|SOS20809.1\|4813490_4815596_-\|Polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
LT963391.1\|SOS20787.1\|4796323_4796926_-\|Maf-like-protein	gnl\|CDD\|234584	PRK00032, PRK00032, septum formation inhibitor Maf.	5.15298e-127
LT963391.1\|SOS20801.1\|4806513_4808088_-\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
LT963391.1\|SOS20789.1\|4796993_4797485_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	4.95152e-26
LT963391.1\|SOS20802.1\|4808245_4809262_+\|SAM-dependent-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	2.85956e-58
LT963391.1\|SOS20806.1\|4812317_4812692_+\|hypothetical-protein	gnl\|CDD\|371338	pfam11006, DUF2845, Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.	4.34192e-27
LT963391.1\|SOS20800.1\|4805466_4806408_-\|malate-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.81523e-44
LT963391.1\|SOS20797.1\|4803577_4803946_+\|rplA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	6.55064e-53
LT963391.1\|SOS20791.1\|4797477_4798545_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	2.04857e-99
LT963391.1\|SOS20793.1\|4798776_4799814_-\|Rod-shape-determining-protein-MreB	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
LT963391.1\|SOS20799.1\|4805086_4805470_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	4.12288e-47
LT963391.1\|SOS20798.1\|4804023_4805055_+\|conjugal-transfer-protein-TraR	gnl\|CDD\|273039	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein. This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General].	7.5661e-71
LT963391.1\|SOS20795.1\|4800321_4801773_+\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
LT963391.1\|SOS20784.1\|4790872_4794688_-\|hypothetical-protein	gnl\|CDD\|273971	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane. [Hypothetical proteins, Conserved].	0
LT963391.1\|SOS20804.1\|4809340_4812358_+\|hypothetical-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	2.52239e-40
LT963391.1\|SOS20782.1\|4789978_4790824_-\|Nitrilase-like-protein	gnl\|CDD\|143596	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10.	1.13405e-141
LT963391.1\|SOS20808.1\|4812830_4813202_-\|phospholipid-binding-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	1.22529e-13
LT963391.1\|SOS20794.1\|4800019_4800307_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.26761e-39

>LT963391.1|SOS20796.1|4801783_4803229_+|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-B
MQWEVVIGLEIHTQLSTQSKIFSGSATTFGSEPNTQASLVDLGMPGVLPVLNKEAVRMAVKFGLAVDAEIGQHNVFARKNYFYPDLPKGYQISQMELPIVGKGHLDITLEDGTVKRIGITRAHLEEDAGKSLHEDFQGMTGIDLNRAGTPLLEIVSEPDMRSAKEAVAYVKAIHAIVRYLGICDGNMAEGSLRCDCNVSIRPKGQVEFGTRCEIKNVNSFRFIEKAINSEIQRQIDLIEDGGKVIQQTRLYDPNTNETRAMRSKEEANDYRYFPDPDLLPVIIEDSFLEETRATLPELPPQKRERFQSQFGLSTYDASVLASSREQADYFEQVVSISGDAKLAANWVMVELGSLLNKQGLEIEQSPVSAEQLGGMLKRITDNTISGKIAKMVFEAMANGEGSADEVIDKRGLKQVTDSGAIESMLDEMLAANAEQVEQYRAADEAKRGKMFGFFVGQAMKASKGKANPQQVNELLKAKLEG
>LT963391.1|SOS20795.1|4800321_4801773_+|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A
MHQMTLAEIARGLAEKKFSSEELTRVLLSRIATLDPQLNSFISLTEDLAITQAQAADARRAAGENGPLLGAPLAHKDLFCTQGIRTSCGSRMLDNFKAPYDATVVSKLASAGTVTLGKTNMDEFAMGSANESSHYGAVKNPWNLQCVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQDSTSIDEPVPDYSASLNTSLKGLRIGVPKEYFSAGLDPRIAQLVHESVKELEKLGAVVKEVSLPNLQHAIPAYYVIAPAEASSNLSRFDGVRFGYRCEDPKDLTDLYKRSRAEGFGPEVQRRIMVGAYALSAGYYDAYYLQAQKIRRLIKNDFMSAFAEVDVILGPTTPNPAWKIGAKTNDPIAEYLEDFYTITANLAGLPGLSMPAGFVDGLPVGVQLLAPYFQEGRLLNVAHQYQQVTDWHTRAPEGF
>LT963391.1|SOS20794.1|4800019_4800307_+|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C
MALERSDVEKIAHLARLGLNDADIPRTTEALNSILGLVDQMQAVDTTGIEPLAHPLEATQRLREDAVTERNRRDTYQAIAPAVQDGLYLVPKVIE
>LT963391.1|SOS20793.1|4798776_4799814_-|Rod-shape-determining-protein-MreB
MFKKLRGMFSSDLSIDLGTANTLIYVRERGIVLNEPSVVAIRTHGNQKSVVAVGTEAKRMLGRTPGNIAAIRPMKDGVIADFSVCEKMLQYFINKVHENSFLQPSPRVLICVPCKSTQVERRAIRESALGAGAREVFLIEEPMAAAIGAGLPVEEARGSMVVDIGGGTTEIALISLNGVVYAESVRVGGDRFDEAIITYVRRNYGSLIGESTAERIKQEIGTAYPGGEVREVDVRGRNLAEGVPRAFTLNSNEVLEALQESLATIVQAVKSALEQSPPELASDIAERGLVLTGGGALLRDLDKLLAQETGLPVIVAEDPLTCVARGGGRALEMMDKHTMDLLSSE
>LT963391.1|SOS20791.1|4797477_4798545_-|rod-shape-determining-protein-MreC
MLAVLSVALMVVDARFTILKPVRSQMSMVLMQSYWIVDLPQRLYQGVASQFGSRTELIAENEKLKTEALLLQGRLQKLAALTEQNVRLRELLNSSALVNEKVEVAELIGMDPNPFTHRIIINKGERDGVVLGQPVLDARGLMGQVVELMPYTSRVLLLTDTTHSIPVQVNRNGLRAIASGTGNPERLELRHVADTADIKEGDLLVSSGLGQRFPAGYPVATVKEVIHDSGQPFAIVRAVPTAALNRSRYLLLVFSDGRSPEERAADAAQAQESIDKGIEPSVMATLPPPTPAFPMWPQATVPVFPGSTATHKPAAQSTTPAPAAAPVTPARPAARPAASQPPASRPSTAREPIDG
>LT963391.1|SOS20789.1|4796993_4797485_-|rod-shape-determining-protein-MreD
MVSHVSGRNGWVVWLTFAIGLLLSVSPLPQFMEIFRPLWLALLLTFWVLALPHKYGMTTAWILGLMEDVLYGTLLGQNALILSLITFLVMSLQQRMRMFPMWQQCLVLLVVFGLAQLAQLWLSALTGNRQPTLALVLPALVSALLWPWISYGLRGLRKRLKIN
>LT963391.1|SOS20787.1|4796323_4796926_-|Maf-like-protein
MPSLYLASGSPRRRELLTQIGVSFTVLNAQIDETPFDHETPAAYVERLALGKAQAGLSVLAAEQQACVMGADTAVVLDGRILGKPADEADALAMLTALSGREHEVMTAVALSDRHRSETRIVTSRVRFRPIQPHEAQAYWASGEPADKAGGYAIQGLAAIFVEGLQGSYSGVVGLPLCETAELLGHFGIPCWQCLEGDES
>LT963391.1|SOS20785.1|4794869_4796327_-|Ribonuclease-G
MSEEILINITPMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFIDIGLDRAAFIHASEISMREGPAVESIASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVGISLKIEDEAERERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPPTVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQRVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDVVLL
>LT963391.1|SOS20784.1|4790872_4794688_-|hypothetical-protein
MGRLPRLVATLTRWGLSLCALVLVLAALYVSLGRQLTPLVAEYRVDVETRASSALGMPLSIGSLEGSWSRFAPVFLAHDVMVGEGSSAVRLDRVRVVPDLWESLLARQVRIAHLEVDGLQFMLRQDKEGNWSVQGLPVRNDSPFDPGQVLEQMQMVSHLLLLDSQVTVQPFDAAPLTLTYVNLSLATGSYHQRLDARLTLPDGQPFALNVRSRIQASQWKDGEADVYASLPQSDWARWLPKSLTREWTLSKLQAGGELWMSWGKGTVQSATARLNAPHVKGVYAGRKPSTVDNLALNAWFARTDTGFDLNLDSLAMSLGDKRWESRLQLTQTAATPDSEELWHVQADRLDLTPLTPLIDSLAPLPEKAMAVVDGLKVTGGLRNVLLDYRPQATGDKRLSFAANLDKVGFNAYRGAPAAGNVTGAISGDLGQGELRLDTNDFMLHLDPIFAKPWRYQKANAHLTWKLDDQAFTLIAPYIKVLGDEGKIAADFLIRIHLSHEQEDYMDLRVGMVDGDGRYTSKYLPTALSPELDHWLRTAVVSGAVKQGFFQYQGSLNKSSPDTARVISLFFDVSNATLAFQPGWPSLTGVDGKVYVENSGVRVKASKGQLLDTKVSNVLVNIPHVPAGQDSHLLVDGSFSGNLIDGLKILQQAPIGTASTFAGWTGEGPLDGKLKLDIPLAKGVEPKVVVDFSTDNARLKLADPVLELTRLKGDFRFDSAKGLSGKGIKAQAFDRPVTAEIAAEGKPGDNVTRIVANGQITVKRLTDWLSVTQPLPVSGDLPYQLQLTLDSKDSPLVINSTLKGVAIDLPAPFGKTAEEERPSEFRMTLQGAERRLGAAYNDQANFAFAAPNGKFADGRGELYLGRGGAIVPDAKGLRIRGELSELDVAPWQELAGRYTGNDPGGSAKQLLNSVDLQIGKLTAMGTTLDNVRVQLQRNAAAWALSLDSALAKGTAVLPDAKSAPIGINMLYVRLPASDPNAAVVENAPDPLADIDPHNIPALDVKIAQLFQGDQLLGAWSLKTRPTATGMRMSDLSLGLKGILLEGDGAWEGTPGSSSSSFKGRVAGKNLADVLKAWNFAPTVTSESFEMNVDGRWPGSPAWVGLKRYSGSLDATLNRGQFVEVEGGAQALRVFGLLNFNSIGRRLRLDFSDLLGKGLSYDRVKGLLVASDGVYVTRNPITLTGPSSNLELNGTLDMVRDRVDAKLLVTLPVTNNLPIAALIVGAPAIGGALFLVDKLLGDRVARFASVQYKVEGPWKEPKITFDKPFEKPQ
>LT963391.1|SOS20782.1|4789978_4790824_-|Nitrilase-like-protein
MSFAVIQMVSQSDVQANLVSARRLLEQAAEGGARLAVLPENFVAMGRRDVASIGRAEAHGHGPILPWLKLAARDLKLWIVAGTLPLPPDERPDGKVTACSLLIDEHGEQVARYDKLHLFDVDVADNRGRYRESDDYAHGNNVVVADTPVGRVGLTVCYDLRFPELYTALREAGAELITAPSAFTAVTGAAHWDILIRARAIETQCYVLAAAQGGVHPGPRETYGHAAIVDPWGRVLAEQAQGEAVLLARRDSEEQASIRARMPVSSHRRFFSQDAMRPASE
>LT963391.1|SOS20797.1|4803577_4803946_+|rplA-family-protein
MRRLIFACSLLTLLAGCANHIIDPHGYDETGTAAYYGARHHGNRTASGEPFNQNALTAAHRQLPFGTRVKVTNLDNDRSVVVRINDRGPHTRGRLIDVSREAAEQLGMLRSGTAPVRVQALD
>LT963391.1|SOS20798.1|4804023_4805055_+|conjugal-transfer-protein-TraR
MFSGLLLLLIGAELSVRAAVHLAAIFKVRPLLIGLTVVAMGTSAPQMAVSLQAAFADNTDIAVGSVIGGNIFNVLVILGLCALIIPLRVARQVLHIDIPLMIGACLLAIGLSWNGEFSKFDGALLLAGLLVCLIVIIRQGGHTPRHGHAETTEKPRTFTRVLMLAAGLLLLTAGGHLLVDASVVIAIHLGLSERIVGLTIIAIGTSLPALMTSLIAAFRGERDIAVGNVIGSNLFNLLGVLGVTALFAPVPLTISPNAMVFDLPIMLGVSLLCVPLFYSGYRIDRMEGLFLLSLYLTYGLHILAISTGMALAERLETKMLTLVLPVLGVVVAWGTIRAWRRQH
>LT963391.1|SOS20799.1|4805086_4805470_+|4-carboxymuconolactone-decarboxylase
MTDKTISEGEQIRRQVMGDVYVDRALGNATEFSQPLQDFVNEHAWGSVWSREGLPLKTRSLITLATLTALKCPQELKGHVRGALNNGCTVEEIREALLHCAVYAGVPAAIDAFRAAQEVIDSYVKPD
>LT963391.1|SOS20800.1|4805466_4806408_-|malate-transporter
MLAIFLQTLNITAPVFAMLFLGVLLKRIGAINDGFIVAASGLVFNVTMPALLFLGIIHADLRAALQPGLLIFFSVATLLSFAFAWGWAIWRCPQEERGVYVQGAFRGNNGVIGLALAASMYGPYGISLGAILAALVIVFYNTLSTIVLAVYSPVIKSDPWSVFKSVLANPLIISVIIASPFAYFSIGLPRWLETSGSYLAQMTLPLALICIGGTLSLASLRKSGSLAISASVMKMITLPLLCTLAAWLVGFRGAELGILFLYFASPTAAASYIMARTANGNYELAAAIIVITTLAAAVTTNVGIFILQWGGWI
>LT963391.1|SOS20801.1|4806513_4808088_-|alkaline-phosphatase
MSQFDLKRRRVIQAVGAGLLLPGLAPAVIASVQDRPKMVDGVQSGDVLGDKAMVWSRSDRPSRMVVEWDTRSMFTQPRRVVSALADPRTDFTARVELSGLPVDQAIFYRVSFEDAQSGVASEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDVGGMRIYEAMRLRLPDFFIHSGDTIYADGPVPEQITTEGGRIWRNLTTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEVPQIWQWDDHEVTNNWSPSKQLDERYKVKDIQLLSSRARQAYLEYAPLRLQQADNGGRIYRKIPYGPMLDVFVLDMRSYRDGNDANLAEKPGPTTAFLGREQLDWLKRELNASRAQWKVIAADMPIGLGVPDGEVSPGVARWEAIANGNDGPALGRELEVAELLAYLRAQKIRDCVWLTADVHYCAAHHYQPDRAVFQDFDPFWEFVAGPLNAGSFGPNVLDKTFGPELVFQKAPPAQNTSPFAGYQFFGEVNIDGQTGEMSVALRDLDGVSVFERKLQPTVEISRIV
>LT963391.1|SOS20802.1|4808245_4809262_+|SAM-dependent-methyltransferase
MSSLNQALSVALDNRQSLLGELHQQGTDCYRLFHGSQEGASGLTIDRYGPQLLVQSFHTRLDRDALLALHEQVNARLGLETLLVYNDRSQGNSRVDRQDTVYKADEAALADHIGHEWGLNYRVRGRHAGQDPLLFLDLRNTRGWVKQHSAGKSVLNLFAYTCGVGLSAAAGGASEVCNLDFAEGNLAVGRENGALNPQLPPMQFIQSDYFPAIRQLAGLPISARRSQQLPSYMKLQQRQYDLVLLDPPAWAKSAFGTVDLLRDYQSLLKPALLTTADGGVLICCNNLAKVSMQDWREQVLRCATKAGRPVRDCQEMLPAKDFPSLDNQPPLKTLILQL
>LT963391.1|SOS20804.1|4809340_4812358_+|hypothetical-protein
MPYSKGFQKRETPLPMSRGLKRTLGSLLTVIVLYSLLGFFILPGVALRIANQQLANYATVPAKLERLEFNPYTLELTLWGLNIGTPGKEQVAFEKLYANLQIDSLWTRALHLQRIELIKPKTELLFDKQGKLNLAQLFKLPASEPAKDEPPGKPFPLRIDEIKLADGYVHFQDMRPSQPIEFLYDTLNFELKNLSTLPEDNADMTLVAAGPDGGQIDWVGRISLIPITSEGTLKVTDSKMKLWWPYVRDALPLALEDGVLNFSTAYTLNLAKETELKLTNVSASVAPFALNTPDGRPLVRLQRLDVSETSVDLAKQLVTVGKIRSQKLETWAAREADGQLDWQKLFASQPGKPAAPQTPAVDDKAAEPAPTTDASAKASAKPATQSTPWQVLLRDVQLRNYMVHLADRVPQEPVALDVGPLNLDIQNFDSLNKSPFTLKLDTGLGKQGNLTAAGDVNLNPVSAQLNVTTRDIDLRLAQAYISPFIRLEMRSGMLGSDLAVNLKSTEPLAFSVTGKAQVNQLHTLDTLKQRDFLKWQQLQLEGLDYKHGTGLSIAKVNMDQPYARFMINEDRTTNVDDLLIPQPDDKTASQPKTARTQPKAKADNPLAIYVGEVNIMDGSANFADMTLTPNFATAVQQLNGRIGTIDNRKATPAPVGIQGKVDRYAPVTIKGSLNPFDPMASLDITTSFKRVELTNLTPYSGKFAGFRIRKGRLNLDLHYLITKGQLKAQNKVLVEQLQLGERVDSPDALDLPIRLAVALLKDTQGRISLELPIEGDLNNPQFSVMPIVWQTLRNLVLRAAQAPFKMLGGLVAGGSSEDLGSVSFAPGSSDLSAEAQSALDKLSVALKERPDLKLEIEGTSAASSDGPLIAQQRLEREYQYTYYKILQRRGDKVPARAGLIQVPEDEKAPMLEGIYRTRLKQQPPAEWANLGKEQRANQMRAAVLKFWSSNEVLLRELGQGRASSIKDYLVDKGKLEDARVYFVDARLGQAQPDGKVISPLHLDSE
>LT963391.1|SOS20806.1|4812317_4812692_+|hypothetical-protein
MVKSSAPSTSTVNEALARTRIKLLINLTLAAMAGSVAASSYATSTMRCGNQLVSTGDRAFEVQQKCGESVSQEVLGTQETFNSNYRRSEAVRIEEWIYGPDNGMYQYLRFEGGRLVRIESKRRT
>LT963391.1|SOS20808.1|4812830_4813202_-|phospholipid-binding-protein
MKKFAIAAATATATATATALTLTMANAAFAQTSAQAPMVLAANTTTQEVKEDTSDTWITTKVKADLLTEKGIPGSDIKVETNKGVVSLSSMVKVTEAQKNTAVAITKKIKGVKDVSAAGLKAE
>LT963391.1|SOS20809.1|4813490_4815596_-|Polyribonucleotide-nucleotidyltransferase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

572372 : 591869

Burkholderia_phage(28.57%)

transposase,integrase

attL 580740:580799|attR 598199:599412

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS14290.1\|572372_573932_-\|transposase	transposase IS66	A0A218MNE7	uncultured_virus	2.0e-114	47.5
SOS14291.1\|573993_574329_-\|transposase	transposase IS66	NA	NA	NA	NA
SOS14293.1\|574325_574658_-\|transposase	transposase	NA	NA	NA	NA
SOS14296.1\|574767_575244_-	polyketide cyclase	NA	NA	NA	NA
SOS14298.1\|575277_578712_-	peptide transporter	A0A2K9KZV5	Tupanvirus	4.2e-56	27.9
SOS14299.1\|578708_579656_-	hypothetical protein	NA	NA	NA	NA
SOS14301.1\|579698_580475_-	hypothetical protein	A0A1L7N1A4	Ralstonia_phage	8.1e-40	40.6
580740:580799	attL	NA	NA	NA	NA
SOS14303.1\|580830_581808_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14305.1\|582501_583161_-	GntR family transcriptional regulator	NA	NA	NA	NA
SOS14307.1\|583371_584349_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14308.1\|584436_584643_-	hypothetical protein	NA	NA	NA	NA
SOS14310.1\|584663_584909_-	hypothetical protein	NA	NA	NA	NA
SOS14312.1\|585333_585771_-\|transposase	transposase	NA	NA	NA	NA
SOS14314.1\|585818_586187_-	ISPS1a	A0A0N9SHJ4	Paenibacillus_phage	4.2e-23	42.7
SOS14315.1\|586277_587351_-	endonuclease DDE	NA	NA	NA	NA
SOS14317.1\|587459_588533_-	endonuclease DDE	NA	NA	NA	NA
SOS14318.1\|588650_589982_+\|integrase	putative prophage P4 integrase	A0A1B0VMI6	Pseudomonas_phage	3.2e-60	37.1
SOS14320.1\|590888_591869_+\|integrase	integrase	NA	NA	NA	NA
598199:599412	attR	NA	NA	NA	NA

DBSCAN-SWA_2

624615 : 656704

Burkholderia_phage(36.36%)

transposase,integrase

attL 620913:620972|attR 663234:664454

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
620913:620972	attL	NA	NA	NA	NA
SOS14377.1\|624615_624939_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS14379.1\|624986_625145_-	hypothetical protein	NA	NA	NA	NA
SOS14380.1\|625144_625471_-	hypothetical protein	NA	NA	NA	NA
SOS14381.1\|625927_626338_+	hypothetical protein	NA	NA	NA	NA
SOS14382.1\|627259_628237_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14384.1\|629048_630026_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14385.1\|630071_630467_+\|transposase	ISPsy16, transposase	NA	NA	NA	NA
SOS14387.1\|630928_631945_-	tyrosine phosphatase	NA	NA	NA	NA
SOS14389.1\|632370_633405_+\|transposase	putative family 20 transposase	NA	NA	NA	NA
SOS14390.1\|634152_634407_-	hypothetical protein	NA	NA	NA	NA
SOS14392.1\|634446_635103_-	partition protein parA	L7TKZ9	Rhizobium_phage	6.6e-27	34.1
SOS14394.1\|635624_636002_+	Resolvase	NA	NA	NA	NA
SOS14395.1\|636520_636826_+	hypothetical protein	NA	NA	NA	NA
SOS14397.1\|636791_642068_+	hypothetical protein	Q7Y5U5	Haemophilus_phage	5.9e-09	26.2
SOS14399.1\|642705_643338_+	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS14400.1\|643292_643484_+	hypothetical protein	NA	NA	NA	NA
SOS14402.1\|643863_644160_-	hypothetical protein	NA	NA	NA	NA
SOS14404.1\|644194_644380_-	hypothetical protein	NA	NA	NA	NA
SOS14405.1\|644530_645616_+	hypothetical protein	NA	NA	NA	NA
SOS14407.1\|645769_646672_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS14409.1\|646668_646992_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS14411.1\|647188_648166_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14412.1\|648444_649314_-	peptidase	NA	NA	NA	NA
SOS14414.1\|650142_651120_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14416.1\|651160_651910_-	type III effector HopAV1	NA	NA	NA	NA
SOS14418.1\|652146_653130_-	Transposase InsH for insertion sequence element IS5-18	Q38213	Escherichia_phage	9.4e-94	55.3
SOS14419.1\|653485_654466_-\|integrase	integrase	NA	NA	NA	NA
SOS14421.1\|655372_656704_-\|integrase	putative prophage P4 integrase	A0A1B0VMI6	Pseudomonas_phage	3.2e-60	37.1
663234:664454	attR	NA	NA	NA	NA

DBSCAN-SWA_3

734605 : 752623

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS14613.1\|734605_734872_+\|transposase	transposase	NA	NA	NA	NA
SOS14614.1\|735332_735701_+	ISPS1a	A0A0N9SHJ4	Paenibacillus_phage	4.2e-23	42.7
SOS14616.1\|735748_736186_+\|transposase	transposase	NA	NA	NA	NA
SOS14618.1\|736262_737336_+	endonuclease DDE	NA	NA	NA	NA
SOS14619.1\|737444_738518_+	endonuclease DDE	NA	NA	NA	NA
SOS14621.1\|738821_739145_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS14622.1\|739141_740044_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS14625.1\|740141_740576_+	YD repeat-containing protein	NA	NA	NA	NA
SOS14627.1\|740674_741100_+	sugar-binding protein	NA	NA	NA	NA
SOS14628.1\|741238_741940_+	YD repeat-containing protein	NA	NA	NA	NA
SOS14630.1\|742440_742542_+	hypothetical protein	NA	NA	NA	NA
SOS14632.1\|742548_743424_+	Transposase InsH for insertion sequence element IS5H	A0A077K814	Ralstonia_phage	2.1e-84	56.6
SOS14633.1\|743552_744455_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS14635.1\|744451_744775_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS14637.1\|745266_745926_+	hypothetical protein	NA	NA	NA	NA
SOS14638.1\|746255_747329_-	endonuclease DDE	NA	NA	NA	NA
SOS14640.1\|747405_747843_-\|transposase	transposase	NA	NA	NA	NA
SOS14641.1\|747890_748259_-	ISPS1a	A0A0N9SHJ4	Paenibacillus_phage	4.2e-23	42.7
SOS14643.1\|748216_749101_-	membrane protein	NA	NA	NA	NA
SOS14645.1\|749146_750124_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14647.1\|750360_751338_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS14658.1\|751471_752209_-	membrane protein	NA	NA	NA	NA
SOS14660.1\|752299_752623_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7

DBSCAN-SWA_4

1654272 : 1667889

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS15953.1\|1654272_1655250_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS15955.1\|1655503_1655872_+	putative lipoprotein	NA	NA	NA	NA
SOS15957.1\|1655964_1657749_+	sugar-binding protein	B6SD27	Bacteriophage	1.7e-61	30.7
SOS15958.1\|1657724_1660289_+	sugar-binding protein	B6SD27	Bacteriophage	2.1e-92	32.2
SOS15960.1\|1660290_1661193_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS15961.1\|1661189_1661513_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS15963.1\|1662323_1662647_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS15965.1\|1662643_1663546_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	4.4e-106	65.9
SOS15966.1\|1663863_1664103_+	putative membrane protein	NA	NA	NA	NA
SOS15968.1\|1664105_1665800_+	Potassium-transporting ATPase A chain	NA	NA	NA	NA
SOS15970.1\|1665810_1667889_+	Potassium-transporting ATPase B chain	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.2e-29	25.3

DBSCAN-SWA_5

1897184 : 1905678

Enterobacteria_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS16335.1\|1897184_1898087_+\|transposase	ISPsy12, transposase OrfB	Q716C2	Shigella_phage	3.1e-83	54.0
SOS16337.1\|1898221_1899199_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS16339.1\|1899499_1899838_+\|transposase	transposase	S5VXZ8	Leptospira_phage	6.2e-13	41.1
SOS16340.1\|1900541_1902491_+	histidine kinase	G3MA91	Bacillus_virus	8.0e-12	30.1
SOS16342.1\|1902986_1903172_+	hypothetical protein	B5TK59	Pseudomonas_phage	4.4e-13	87.2
SOS16343.1\|1903378_1903756_-	hypothetical protein	A0A077K814	Ralstonia_phage	2.0e-23	55.1
SOS16345.1\|1903775_1904099_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS16347.1\|1904095_1904998_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS16349.1\|1904964_1905678_-	Transposase InsH for insertion sequence element IS5Y	Q38213	Escherichia_phage	9.9e-69	57.9

DBSCAN-SWA_6

2439141 : 2447036

Enterobacteria_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS17229.1\|2439141_2440044_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS17231.1\|2440040_2440364_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	1.5e-32	65.7
SOS17233.1\|2440612_2441011_+	chitin-binding protein	NA	NA	NA	NA
SOS17235.1\|2440955_2441393_-\|transposase	transposase	NA	NA	NA	NA
SOS17236.1\|2441440_2441809_-	ISPS1a	A0A0N9SHJ4	Paenibacillus_phage	4.2e-23	42.7
SOS17238.1\|2442708_2443032_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS17240.1\|2443028_2443931_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	4.4e-106	65.9
SOS17242.1\|2444262_2444367_+	putative membrane protein	NA	NA	NA	NA
SOS17244.1\|2444789_2445860_-	DNA topoisomerase	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	8.8e-45	33.7
SOS17246.1\|2445947_2447036_-	Molybdenum import ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.3e-19	32.3

DBSCAN-SWA_7

2693025 : 2769358

Enterobacteria_phage(19.05%)

transposase,protease,integrase

attL 2692976:2693035|attR 2697401:2698714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2692976:2693035	attL	NA	NA	NA	NA
SOS17670.1\|2693025_2693349_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS17671.1\|2693345_2694248_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS17672.1\|2694424_2695093_+\|integrase	integrase	NA	NA	NA	NA
SOS17673.1\|2695228_2696191_-	Transposase InsH for insertion sequence element IS5H	A0A077K814	Ralstonia_phage	2.1e-90	56.2
SOS17674.1\|2696187_2697090_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS17675.1\|2697086_2697410_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS17676.1\|2697422_2697527_-	hypothetical protein	NA	NA	NA	NA
SOS17677.1\|2697612_2698740_+	hypothetical protein	NA	NA	NA	NA
2697401:2698714	attR	NA	NA	NA	NA
SOS17678.1\|2698780_2699758_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS17679.1\|2699903_2700341_-\|transposase	transposase	NA	NA	NA	NA
SOS17680.1\|2700388_2700757_-	ISPS1a	A0A0N9SHJ4	Paenibacillus_phage	4.2e-23	42.7
SOS17681.1\|2701342_2701663_+\|transposase	transposase IS66	S5VTP8	Leptospira_phage	2.6e-16	44.7
SOS17682.1\|2701968_2702946_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS17683.1\|2703258_2703396_+	hypothetical protein	NA	NA	NA	NA
SOS17684.1\|2703963_2704629_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
SOS17685.1\|2705032_2706598_+	putative ABC transporter ATP-binding protein YbiT	A0A2K9L0W2	Tupanvirus	7.5e-61	28.5
SOS17686.1\|2706661_2707795_-	6-phosphogluconolactonase	NA	NA	NA	NA
SOS17687.1\|2707920_2708712_+	UPF0226 membrane protein	NA	NA	NA	NA
SOS17689.1\|2708736_2709060_+	putative membrane protein	NA	NA	NA	NA
SOS17690.1\|2709194_2709836_-	Transposase InsH for insertion sequence element IS5H	A0A077K814	Ralstonia_phage	3.2e-58	57.5
SOS17691.1\|2709966_2710944_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS17692.1\|2711397_2714076_+	Outer membrane autotransporter barrel	NA	NA	NA	NA
SOS17693.1\|2714106_2716332_-	1,4-alpha-glucan branching enzyme GlgB	NA	NA	NA	NA
SOS17694.1\|2716328_2719655_-	alpha-amylase	NA	NA	NA	NA
SOS17695.1\|2719674_2721693_-	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA
SOS17696.1\|2722193_2722940_-	putative oxidoreductase YgfF	F2NZ40	Diadromus_pulchellus_ascovirus	9.6e-14	30.6
SOS17697.1\|2723042_2725154_-	putative signaling protein	G3MA91	Bacillus_virus	4.0e-25	41.1
SOS17698.1\|2725322_2726792_-	RND transporter	NA	NA	NA	NA
SOS17699.1\|2726788_2729896_-	Multidrug resistance protein MdtC	S5VTK5	Leptospira_phage	5.9e-65	23.8
SOS17700.1\|2729892_2733003_-	Multidrug resistance protein MdtB	NA	NA	NA	NA
SOS17701.1\|2732999_2734301_-	Multidrug resistance protein MdtA	NA	NA	NA	NA
SOS17702.1\|2734605_2735583_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS17703.1\|2735651_2736167_-	putative thiol peroxidase	NA	NA	NA	NA
SOS17704.1\|2736257_2737175_-	transcriptional regulator	NA	NA	NA	NA
SOS17705.1\|2737280_2740961_-	hypothetical protein	NA	NA	NA	NA
SOS17707.1\|2740966_2742691_-	membrane protein	NA	NA	NA	NA
SOS17708.1\|2742750_2743422_-	GNAT family acetyltransferase	NA	NA	NA	NA
SOS17709.1\|2743613_2744426_+	Exodeoxyribonuclease III	A0A0N9QXX6	Chrysochromulina_ericina_virus	1.7e-11	24.1
SOS17710.1\|2744546_2745884_+	membrane protein	NA	NA	NA	NA
SOS17711.1\|2745910_2747140_-	Acyl-CoA dehydrogenase family member 10	NA	NA	NA	NA
SOS17712.1\|2747323_2748253_+	LysR family transcriptional regulator	NA	NA	NA	NA
SOS17713.1\|2748418_2748811_+	MerR family transcriptional regulator	NA	NA	NA	NA
SOS17714.1\|2748829_2749480_+	Hydroxymethylglutaryl-CoA lyase, mitochondrial	A0A1V0SKU2	Klosneuvirus	1.3e-27	38.3
SOS17715.1\|2749476_2749728_+	hypothetical protein	NA	NA	NA	NA
SOS17716.1\|2750151_2750415_-	putative membrane protein	NA	NA	NA	NA
SOS17717.1\|2750451_2751615_+	Isovaleryl-CoA dehydrogenase, mitochondrial	NA	NA	NA	NA
SOS17718.1\|2751628_2752087_+	putative methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	NA	NA	NA	NA
SOS17719.1\|2752093_2753236_+	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	A0A1B2ITV7	Pike_perch_iridovirus	1.7e-17	71.4
SOS17720.1\|2753244_2754111_+	gamma-carboxygeranoyl-CoA hydratase	NA	NA	NA	NA
SOS17721.1\|2754107_2756057_+	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	NA	NA	NA	NA
SOS17722.1\|2756296_2756890_-	Fe/S biogenesis protein NfuA	NA	NA	NA	NA
SOS17723.1\|2756960_2757983_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	8.8e-18	31.9
SOS17724.1\|2758163_2760470_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
SOS17725.1\|2760628_2764348_+	Methionine synthase	A0A140XBC7	Dickeya_phage	2.3e-15	65.1
SOS17727.1\|2764360_2765461_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
SOS17728.1\|2765561_2765675_-	hypothetical protein	NA	NA	NA	NA
SOS17729.1\|2766016_2767675_+	sulfite reductase	NA	NA	NA	NA
SOS17730.1\|2767658_2768153_+	oxidoreductase	NA	NA	NA	NA
SOS17731.1\|2768662_2769358_-\|protease	putative protease SohB	NA	NA	NA	NA

DBSCAN-SWA_8

3088999 : 3092921

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS18179.1\|3088999_3090301_-	Citrate-proton symporter	Q6JIH2	Burkholderia_virus	2.8e-61	35.8
SOS18181.1\|3090409_3090928_+	tusD-like sulfurtransferase	A0A2H4JA39	uncultured_Caudovirales_phage	6.3e-57	80.1
SOS18183.1\|3090929_3091292_+	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.1e-35	62.8
SOS18185.1\|3091291_3091591_+	hypothetical protein	A0A2H4JG28	uncultured_Caudovirales_phage	2.9e-30	62.6
SOS18187.1\|3091587_3091923_+	DsrC family protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.4e-43	77.5
SOS18189.1\|3091919_3092921_+	hypothetical protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.0e-163	83.2

DBSCAN-SWA_9

4300193 : 4336726

Pseudomonas_phage(55.56%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS19896.1\|4300193_4301405_-\|tRNA	Tyrosine-tRNA ligase	NA	NA	NA	NA
SOS19898.1\|4301606_4303025_+	peptidase M23	A8ATH6	Listeria_phage	4.2e-18	44.7
SOS19900.1\|4303028_4304123_+	Anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
SOS19902.1\|4304226_4304508_+	hypothetical protein	NA	NA	NA	NA
SOS19904.1\|4304509_4305718_+	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS19906.1\|4305950_4306301_-	Iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
SOS19908.1\|4306400_4307435_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
SOS19910.1\|4307568_4307997_+	membrane protein	NA	NA	NA	NA
SOS19912.1\|4308105_4309011_+	hypothetical protein	NA	NA	NA	NA
SOS19914.1\|4309077_4309854_+	short-chain dehydrogenase	NA	NA	NA	NA
SOS19916.1\|4309957_4310296_+	HIT family hydrolase	NA	NA	NA	NA
SOS19918.1\|4310418_4311066_+	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
SOS19920.1\|4311142_4311937_-	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA
SOS19922.1\|4312179_4312602_-	peroxiredoxin	NA	NA	NA	NA
SOS19923.1\|4312811_4313456_+	Cyclic AMP receptor-like protein	NA	NA	NA	NA
SOS19925.1\|4313467_4314163_-	hypothetical protein	NA	NA	NA	NA
SOS19927.1\|4314192_4315029_-	Indole-3-glycerol phosphate synthase	A0A0P0IR83	Acinetobacter_phage	8.9e-69	56.5
SOS19929.1\|4315025_4316087_-	Anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.0e-111	57.7
SOS19931.1\|4316096_4316696_-	Anthranilate synthase component 2	A0A0P0IKJ1	Acinetobacter_phage	1.1e-73	65.3
SOS19933.1\|4317108_4317618_-	hypothetical protein	B5TK84	Pseudomonas_phage	9.7e-26	46.6
SOS19935.1\|4317614_4318160_-	prophage PSPPH01, chitinase family protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.0e-69	72.8
SOS19937.1\|4318380_4319358_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS19939.1\|4319503_4320022_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
SOS19941.1\|4320021_4321881_-\|tail	tail fiber protein	A0A077K818	Ralstonia_phage	1.3e-38	53.7
SOS19943.1\|4321891_4322491_-\|tail	phage tail protein	B5TK76	Pseudomonas_phage	4.1e-84	71.4
SOS19945.1\|4322478_4323519_-\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	3.2e-132	70.1
SOS19947.1\|4323508_4323907_-	hypothetical protein	B5TK74	Pseudomonas_phage	1.5e-42	63.6
SOS19949.1\|4323903_4324416_-	phage assembly protein	B5TK73	Pseudomonas_phage	2.4e-64	73.2
SOS19952.1\|4324412_4325345_-	hypothetical protein	B5TK72	Pseudomonas_phage	9.3e-91	60.4
SOS19954.1\|4325417_4325540_-	hypothetical protein	NA	NA	NA	NA
SOS19956.1\|4325543_4326929_-	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	4.1e-111	46.2
SOS19958.1\|4326925_4329070_-\|tail	tail tape measure protein	U5P420	Shigella_phage	1.6e-77	39.3
SOS19961.1\|4329200_4329497_-	ArsR family transcriptional regulator	B5TK69	Pseudomonas_phage	3.9e-35	78.5
SOS19963.1\|4329493_4329841_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
SOS19965.1\|4329901_4331398_-\|tail	tail sheath protein	B5TK67	Pseudomonas_phage	2.9e-235	80.7
SOS19967.1\|4331416_4331605_-	hypothetical protein	B5TK66	Pseudomonas_phage	3.1e-14	73.5
SOS19969.1\|4331601_4332192_-	hypothetical protein	B5TK65	Pseudomonas_phage	1.2e-51	51.5
SOS19971.1\|4332238_4332577_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	4.5e-19	57.9
SOS19973.1\|4332557_4332947_-	chemotaxis protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
SOS19975.1\|4333069_4333585_-	glycoside hydrolase	NA	NA	NA	NA
SOS19977.1\|4333581_4334241_-	glycoside hydrolase	NA	NA	NA	NA
SOS19979.1\|4334256_4334445_-	hypothetical protein	B5TK59	Pseudomonas_phage	3.7e-15	84.0
SOS19981.1\|4334716_4335160_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.5e-24	45.8
SOS19983.1\|4335313_4335961_+	prophage PSPPH01, Cro/CI family transcriptional regulator	A0A0M4QWY1	Salmonella_phage	2.5e-50	47.2
SOS19985.1\|4336113_4336362_+	hypothetical protein	NA	NA	NA	NA
SOS19986.1\|4336459_4336726_+	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-16	51.2

DBSCAN-SWA_10

4441377 : 4449157

Burkholderia_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS20173.1\|4441377_4442355_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS20175.1\|4442556_4442880_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS20177.1\|4442876_4443779_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS20179.1\|4443876_4443993_-	putative membrane protein	NA	NA	NA	NA
SOS20181.1\|4444241_4444763_-	hypothetical protein	NA	NA	NA	NA
SOS20183.1\|4445170_4446148_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS20185.1\|4446384_4447362_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS20187.1\|4447598_4448576_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS20189.1\|4448788_4449157_+	ISPS1a	A0A0N9SHJ4	Paenibacillus_phage	4.2e-23	42.7

DBSCAN-SWA_11

4730678 : 4789976

Enterobacteria_phage(20.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS20671.1\|4730678_4731134_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
SOS20673.1\|4731382_4731871_-	Protein-export protein SecB	NA	NA	NA	NA
SOS20675.1\|4731911_4732163_-	glutaredoxin	V9QKN6	Rhizobium_phage	1.8e-12	39.7
SOS20677.1\|4732165_4732579_-	sulfurtransferase	NA	NA	NA	NA
SOS20679.1\|4732735_4734268_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
SOS20681.1\|4734421_4735744_+	peptidase M23	NA	NA	NA	NA
SOS20683.1\|4735777_4737115_+\|protease	Carboxy-terminal-processing protease	A0A0R6PIZ1	Moraxella_phage	1.0e-26	29.8
SOS20685.1\|4737118_4737901_+	yibQ-like protein	NA	NA	NA	NA
SOS20687.1\|4739035_4739161_-	hypothetical protein	NA	NA	NA	NA
SOS20689.1\|4739273_4740176_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS20691.1\|4740172_4740496_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS20692.1\|4740458_4741328_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	1.3e-75	57.4
SOS20695.1\|4741524_4741848_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS20697.1\|4741844_4742747_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS20699.1\|4742900_4743986_-	hypothetical protein	NA	NA	NA	NA
SOS20700.1\|4744136_4744322_+	hypothetical protein	NA	NA	NA	NA
SOS20702.1\|4744356_4744653_+	hypothetical protein	NA	NA	NA	NA
SOS20703.1\|4745032_4745224_-	hypothetical protein	NA	NA	NA	NA
SOS20704.1\|4745178_4745811_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS20706.1\|4746448_4754149_-	hypothetical protein	Q7Y5U5	Haemophilus_phage	8.7e-09	26.2
SOS20708.1\|4754667_4755045_-	Resolvase	NA	NA	NA	NA
SOS20710.1\|4755467_4756445_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS20711.1\|4757821_4759720_-	Bifunctional enzyme CysN/CysC	A0A1V0SGC3	Hokovirus	4.4e-31	29.2
SOS20712.1\|4759730_4760648_-	Sulfate adenylyltransferase subunit 2	NA	NA	NA	NA
SOS20713.1\|4760801_4761560_-	putative GTP cyclohydrolase 1 type 2	NA	NA	NA	NA
SOS20714.1\|4761671_4762832_+	2-alkenal reductase	W5SAB9	Pithovirus	2.2e-09	29.6
SOS20716.1\|4762999_4764073_-	endonuclease DDE	NA	NA	NA	NA
SOS20718.1\|4764539_4765280_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	1.8e-73	61.0
SOS20720.1\|4765334_4765616_+	hypothetical protein	NA	NA	NA	NA
SOS20722.1\|4765617_4766826_+	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS20724.1\|4766976_4767282_+\|transposase	transposase	NA	NA	NA	NA
SOS20726.1\|4767740_4768793_-	Histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	4.6e-22	26.6
SOS20728.1\|4768792_4770139_-	Histidinol dehydrogenase	NA	NA	NA	NA
SOS20730.1\|4770263_4770899_-	ATP phosphoribosyltransferase	NA	NA	NA	NA
SOS20732.1\|4771053_4772319_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
SOS20735.1\|4772341_4772581_-	BolA family transcriptional regulator	NA	NA	NA	NA
SOS20737.1\|4772695_4773001_-	anti-sigma factor antagonist	NA	NA	NA	NA
SOS20739.1\|4772997_4773648_-	Toluene tolerance protein ttg2D	NA	NA	NA	NA
SOS20741.1\|4773667_4774135_-	organic solvent ABC transporter substrate-binding protein	NA	NA	NA	NA
SOS20743.1\|4774134_4774932_-	putative ABC transporter permease protein	NA	NA	NA	NA
SOS20745.1\|4774931_4775741_-	putative ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.5e-24	32.1
SOS20747.1\|4776045_4777020_+	Arabinose 5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	3.4e-35	32.7
SOS20749.1\|4777019_4777559_+	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC	A0A140XBD6	Dickeya_phage	2.6e-21	41.4
SOS20751.1\|4777567_4778140_+	hypothetical protein	NA	NA	NA	NA
SOS20754.1\|4778126_4778675_+	organic solvent tolerance protein OstA	NA	NA	NA	NA
SOS20756.1\|4778675_4779401_+	Lipopolysaccharide export system ATP-binding protein LptB	A0A2H4PQG7	Staphylococcus_phage	3.8e-23	27.0
SOS20758.1\|4779607_4781077_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA
SOS20759.1\|4781152_4781461_+	ribosome hibernation promoting factor HPF	NA	NA	NA	NA
SOS20761.1\|4781472_4781937_+	Nitrogen regulatory protein	NA	NA	NA	NA
SOS20763.1\|4781939_4782797_+	UPF0042 nucleotide-binding protein	A0A0R8VB27	Thermobifida_phage	1.5e-07	30.2
SOS20765.1\|4782813_4783086_+	phosphocarrier protein HPr	NA	NA	NA	NA
SOS20767.1\|4783270_4783618_-	Superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	3.8e-42	71.4
SOS20769.1\|4783660_4783882_-	hypothetical protein	Q56AR7	Bacillus_thuringiensis_phage	7.9e-17	60.8
SOS20771.1\|4783883_4784345_-	hypothetical protein	NA	NA	NA	NA
SOS20773.1\|4784379_4785756_-	Fumarate hydratase class II 1	NA	NA	NA	NA
SOS20775.1\|4785748_4786144_-	fagA protein	NA	NA	NA	NA
SOS20776.1\|4786512_4787859_-\|protease	Metalloprotease PmbA	NA	NA	NA	NA
SOS20778.1\|4787966_4788488_+	UPF0307 protein	NA	NA	NA	NA
SOS20780.1\|4788536_4789976_-\|protease	tldD-like metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_12

4859414 : 4865381

Burkholderia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS20873.1\|4859414_4860392_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS20875.1\|4860547_4861531_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.2e-93	55.3
SOS20876.1\|4861768_4862746_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS20877.1\|4863041_4864025_-	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.2e-93	55.3
SOS20878.1\|4864158_4865061_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS20879.1\|4865057_4865381_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7

DBSCAN-SWA_13

5336685 : 5389579

Enterobacteria_phage(41.18%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS22939.1\|5336685_5337405_+\|holin	Phosphatidylcholine synthase	NA	NA	NA	NA
SOS22941.1\|5337471_5338737_-	putative sugar efflux transporter	NA	NA	NA	NA
SOS22943.1\|5338950_5339385_-	thiol-disulfide oxidoreductase	NA	NA	NA	NA
SOS22945.1\|5339493_5339835_-	alkylphosphonate utilization operon protein PhnA	NA	NA	NA	NA
SOS22947.1\|5340105_5342127_+	acyltransferase	B5WZU0	Pseudomonas_phage	1.5e-101	51.5
SOS22949.1\|5342192_5342852_+	phosphohydrolase	S4W232	Pandoravirus	1.1e-08	26.3
SOS22950.1\|5342971_5343424_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
SOS22952.1\|5343368_5344622_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-65	47.9
SOS22955.1\|5344693_5345332_-	Carbonic anhydrase 2	NA	NA	NA	NA
SOS22957.1\|5345502_5345910_+	HPr	NA	NA	NA	NA
SOS22959.1\|5345919_5346372_-	alanine acetyltransferase	NA	NA	NA	NA
SOS22961.1\|5346364_5347168_-	hypothetical protein	NA	NA	NA	NA
SOS22962.1\|5347312_5348590_+	hypothetical protein	NA	NA	NA	NA
SOS22964.1\|5348579_5349287_+	chromosome partitioning protein	NA	NA	NA	NA
SOS22966.1\|5349283_5352103_+	chromosome segregation ATPase	NA	NA	NA	NA
SOS22968.1\|5352276_5353524_+	pectate lyase	NA	NA	NA	NA
SOS22970.1\|5357268_5357517_+	hypothetical protein	A0A140XBD1	Dickeya_phage	5.2e-25	86.2
SOS22972.1\|5359448_5360942_-	putative 3-oxopropanoate dehydrogenase	NA	NA	NA	NA
SOS22974.1\|5361046_5362393_-	Omega-amino acid-pyruvate aminotransferase	NA	NA	NA	NA
SOS22976.1\|5362505_5363426_+	HTH-type transcriptional activator BauR	NA	NA	NA	NA
SOS22978.1\|5363612_5365010_+	Xanthine permease XanP	H9YQ34	environmental_Halophage	2.5e-15	38.6
SOS22980.1\|5365105_5365768_+	TetR family transcriptional regulator	NA	NA	NA	NA
SOS22982.1\|5365800_5366394_+	thymidylate synthase	NA	NA	NA	NA
SOS22984.1\|5366916_5368470_+	ABC transporter	A0A2H4PQG7	Staphylococcus_phage	5.1e-17	28.2
SOS22987.1\|5368481_5369582_+	sugar ABC transporter permease	NA	NA	NA	NA
SOS22989.1\|5369581_5370508_+	ABC transporter permease	NA	NA	NA	NA
SOS22991.1\|5370718_5370859_+	hypothetical protein	NA	NA	NA	NA
SOS22993.1\|5370910_5371984_+	endonuclease DDE	NA	NA	NA	NA
SOS22995.1\|5372057_5372165_+	putative membrane protein	NA	NA	NA	NA
SOS22996.1\|5372326_5373400_-	endonuclease DDE	NA	NA	NA	NA
SOS22998.1\|5373651_5374095_+	hypothetical protein	NA	NA	NA	NA
SOS23000.1\|5374051_5374345_+	NAD-dependent DNA ligase	A0A0U4J8W4	Pseudomonas_phage	1.4e-29	68.8
SOS23002.1\|5374475_5375231_-	Transposase InsH for insertion sequence element IS5H	A0A077K814	Ralstonia_phage	4.6e-72	58.3
SOS23004.1\|5375298_5376201_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS23006.1\|5376197_5376521_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS23008.1\|5376568_5376775_-	hypothetical protein	Q38213	Escherichia_phage	4.3e-17	54.4
SOS23010.1\|5377009_5377339_-	endonuclease DDE	NA	NA	NA	NA
SOS23012.1\|5377358_5377682_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS23015.1\|5377678_5378581_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS23017.1\|5378722_5379256_+	type III effector	NA	NA	NA	NA
SOS23019.1\|5379339_5379777_-\|transposase	transposase	NA	NA	NA	NA
SOS23021.1\|5379824_5380193_-	ISPS1a	A0A0N9SHJ4	Paenibacillus_phage	4.2e-23	42.7
SOS23023.1\|5380283_5381357_-	endonuclease DDE	NA	NA	NA	NA
SOS23025.1\|5381465_5382539_-	endonuclease DDE	NA	NA	NA	NA
SOS23027.1\|5383315_5384656_+	putative 21 kDa protein in iaaL 5'region	NA	NA	NA	NA
SOS23029.1\|5384840_5385920_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS23031.1\|5386344_5386815_-	resolvase	NA	NA	NA	NA
SOS23033.1\|5387074_5387464_-	resolvase	A0A0A7NPV4	Enterobacteria_phage	2.2e-30	56.9
SOS23035.1\|5387706_5388030_+\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS23037.1\|5388026_5388929_+	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS23039.1\|5389090_5389579_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_14

5484657 : 5520467

Enterobacteria_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS23230.1\|5484657_5485692_+\|transposase	putative family 20 transposase	NA	NA	NA	NA
SOS23232.1\|5486178_5493279_-	hypothetical protein	Q7Y5U5	Haemophilus_phage	8.0e-09	26.2
SOS23234.1\|5493796_5494057_-	hypothetical protein	NA	NA	NA	NA
SOS23236.1\|5494102_5495005_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS23238.1\|5495001_5495325_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS23240.1\|5495337_5495763_-	Resolvase	NA	NA	NA	NA
SOS23242.1\|5496146_5496851_+	plasmid partitioning protein ParA	A0A0A8IL09	Aurantimonas_phage	2.8e-39	43.1
SOS23244.1\|5496847_5497171_+	stability/partitioning determinant	NA	NA	NA	NA
SOS23246.1\|5497337_5498315_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS23248.1\|5498497_5498629_+	hypothetical protein	NA	NA	NA	NA
SOS23250.1\|5498801_5500010_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS23252.1\|5500011_5500902_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	1.0e-75	57.4
SOS23254.1\|5501010_5501994_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	1.2e-93	55.3
SOS23256.1\|5502843_5503605_+	Adenylate dimethylallyltransferase	NA	NA	NA	NA
SOS23258.1\|5503620_5505273_+	radical SAM domain protein	NA	NA	NA	NA
SOS23260.1\|5505341_5506319_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS23262.1\|5506593_5507496_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS23264.1\|5507492_5507816_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS23266.1\|5508467_5508665_+	hypothetical protein	NA	NA	NA	NA
SOS23268.1\|5508744_5510361_+	Polygalacturonase	NA	NA	NA	NA
SOS23270.1\|5510606_5511509_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	8.9e-107	66.2
SOS23272.1\|5511505_5511829_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	5.7e-32	65.7
SOS23274.1\|5511841_5512702_-	Transposase InsH for insertion sequence element IS5-18	Q38213	Escherichia_phage	9.8e-79	54.7
SOS23276.1\|5513207_5513909_-	YD repeat-containing protein	NA	NA	NA	NA
SOS23278.1\|5514047_5515421_-	sugar-binding protein	NA	NA	NA	NA
SOS23280.1\|5515690_5515957_-\|transposase	transposase	NA	NA	NA	NA
SOS23282.1\|5515953_5516382_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SOS23284.1\|5517104_5517614_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.3e-17	39.5
SOS23286.1\|5517745_5518819_+	endonuclease DDE	NA	NA	NA	NA
SOS23288.1\|5518927_5520001_+	endonuclease DDE	NA	NA	NA	NA
SOS23290.1\|5520029_5520467_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_15

5970289 : 5978835

Burkholderia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS24069.1\|5970289_5971267_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS24071.1\|5971725_5972703_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS24073.1\|5972771_5973320_-	hypothetical protein	NA	NA	NA	NA
SOS24075.1\|5973954_5976210_-	type III restriction protein res subunit	M1HKT1	Acanthocystis_turfacea_Chlorella_virus	4.3e-33	30.8
SOS24077.1\|5976467_5977445_-	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS24079.1\|5977727_5978084_-	hypothetical protein	A0A2H4J8C3	uncultured_Caudovirales_phage	2.2e-16	44.4
SOS24081.1\|5978070_5978835_-	Ser/Thr protein phosphatase family protein	A0A067XQN2	Caulobacter_phage	3.8e-34	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. LT963393

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

73035 : 81632

Enterobacteria_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SOS31245.1\|73035_73938_-	Transposase for insertion sequence element IS629	Q6H9S3	Enterobacteria_phage	5.8e-106	65.9
SOS31246.1\|73934_74258_-\|transposase	transposase	Q6H9S4	Enterobacteria_phage	8.8e-33	66.7
SOS31247.1\|74503_75481_+	Transposase InsH for insertion sequence element IS5Y	E5E3P6	Burkholderia_phage	4.5e-96	57.3
SOS31248.1\|76127_76637_+	N-acetyltransferase GCN5	NA	NA	NA	NA
SOS31249.1\|76666_76897_-	hypothetical protein	NA	NA	NA	NA
SOS31250.1\|76893_77523_-	ATPase	K7R2R7	Vibrio_phage	8.3e-43	44.2
SOS31251.1\|77911_78487_+\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	6.0e-40	48.1
SOS31252.1\|78467_79223_+	Transposase InsH for insertion sequence element IS5H	A0A077K814	Ralstonia_phage	4.6e-72	58.3
SOS31253.1\|79682_81632_-	histidine kinase	G3MA91	Bacillus_virus	8.0e-12	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LT963392

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. LT963394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. LT963391

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. LT963393

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection