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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LT963408 Pseudomonas syringae group genomosp. 3 isolate CFBP6411 genome assembly, chromosome: I 5 crisprs csa3,DEDDh,PD-DExK,RT,DinG,cas3 1 0 21 0

Results visualization

1. LT963408
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT963408_1 3967923-3968034 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT963408_2 4537945-4538180 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT963408_3 4885339-4885488 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT963408_4 5475823-5475922 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LT963408_5 5829083-5829236 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
LT963408_4 4.1|5475846|54|LT963408|CRISPRCasFinder 5475846-5475899 54 LT963408.1 5475668-5475721 0 1.0

1. spacer 4.1|5475846|54|LT963408|CRISPRCasFinder matches to position: 5475668-5475721, mismatch: 0, identity: 1.0

gatcgacaacgctcatgtgggagtgagcttgctcacgaagaggcccgtatgacc	CRISPR spacer
gatcgacaacgctcatgtgggagtgagcttgctcacgaagaggcccgtatgacc	Protospacer
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 553168 : 618823 63 Pseudomonas_phage(44.12%) tRNA,plate,bacteriocin,tail,integrase attL 546260:546274|attR 568389:568403
DBSCAN-SWA_2 1047060 : 1055252 10 Burkholderia_virus(28.57%) NA NA
DBSCAN-SWA_3 1507610 : 1568575 60 Bacillus_phage(18.18%) tRNA,transposase,tail,integrase attL 1512513:1512529|attR 1562986:1563002
DBSCAN-SWA_4 1712024 : 1767858 58 uncultured_virus(17.65%) tRNA,transposase,integrase attL 1747510:1747529|attR 1775429:1775448
DBSCAN-SWA_5 1775458 : 1827449 57 Bacillus_phage(20.0%) transposase NA
DBSCAN-SWA_6 1944256 : 1996155 52 Leptospira_phage(25.0%) tRNA,transposase,integrase attL 1939934:1939950|attR 1968329:1968345
DBSCAN-SWA_7 2003749 : 2043050 37 Pseudomonas_phage(28.57%) transposase,protease NA
DBSCAN-SWA_8 2465517 : 2504388 34 uncultured_Caudovirales_phage(46.67%) tRNA,transposase,protease NA
DBSCAN-SWA_9 2585558 : 2661296 46 Leptospira_phage(33.33%) transposase,protease NA
DBSCAN-SWA_10 3477885 : 3516724 39 Leptospira_phage(44.44%) transposase NA
DBSCAN-SWA_11 3645744 : 3655028 14 Pseudomonas_phage(50.0%) holin,terminase NA
DBSCAN-SWA_12 3709974 : 3782078 87 Pseudomonas_phage(53.06%) holin,transposase,head,tail,terminase,integrase attL 3703826:3703842|attR 3782000:3782016
DBSCAN-SWA_13 4097618 : 4114577 16 Pseudomonas_phage(85.71%) tail NA
DBSCAN-SWA_14 4313787 : 4365759 47 Leptospira_phage(25.0%) transposase NA
DBSCAN-SWA_15 4628803 : 4681148 51 Bacillus_phage(21.43%) transposase NA
DBSCAN-SWA_16 5150106 : 5201958 59 Pseudomonas_phage(60.0%) transposase,tail,protease NA
DBSCAN-SWA_17 5253630 : 5276111 23 Leptospira_phage(50.0%) protease,transposase,holin NA
DBSCAN-SWA_18 5305691 : 5349188 41 Erysipelothrix_phage(22.22%) tRNA,transposase,integrase attL 5312714:5312729|attR 5348677:5348692
DBSCAN-SWA_19 5872088 : 5905299 37 Leptospira_phage(100.0%) tRNA,bacteriocin,transposase NA
DBSCAN-SWA_20 6000375 : 6074204 88 Pseudomonas_phage(61.76%) lysis,tRNA,capsid,portal,head,transposase,tail,terminase,integrase,protease attL 6062958:6063017|attR 6073444:6074619
DBSCAN-SWA_21 6161372 : 6182396 18 Leptospira_phage(71.43%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage