CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT962942	Streptomyces chartreusis NRRL 3882 isolate NRRL3882 genome assembly, chromosome: I	13 crisprs	NA	2	6	0	0

Cas Category Instructions

Results visualization

1. LT962942

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CRISPR-Cas detection and classification

Crispr_ID: LT962942_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_4

85450-85599

Orphan

Consensus_repeat	Method
GAGCCCGCGCGAGCGGGAGTG	PILER-CR

2 spacers

The CRISPR arrays of LT962942_4

>merge|LT962942|4|85450-85599|PILER-CR
GAGCCCGCGCGAGCGGGGGTGATACGGCCTCGGCCTCCTTCACCATGTGGTGGAACACTTGGTGTCTGCGCGAGCGGGAGTGGCTCAGGGTGCTCGGTGATGCGCTAGCTGTGCTCGGCCCCGCGTACTTGGCCCGCGCGAGCGGGAGTG

>LT962942|4|1|85450-85599|PILER-CR
GAGCCCGCGCGAGCGGGGGTG	ATACGGCCTCGGCCTCCTTCACCATGTGGTGGAACACTTG
GTGTCTGCGCGAGCGGGAGTG	GCTCAGGGTGCTCGGTGATGCGCTAGCTGTGCTCGGCCCCGCGTACT
TGGCCCGCGCGAGCGGGAGTG

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Crispr_ID: LT962942_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_2

83345-83495

Orphan

Consensus_repeat	Method
CCCGCGCGAGCGGGAGTGACTCGGCGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT962942_2

>merge|LT962942|2|83345-83495|CRISPRCasFinder
CCCGCGCGAGCGGGAGTGACTCGGCGGCGCGAGAGTGGTTCACGTCGGCCTGGATGTAAAGCCCGCGCGAGCGGGAGCGACTCGGCGGCCGACAGGCCGTCCGACCAGTCCTTCTTGAAGGACCCGCGTGAGCGGGAGTGACCCGACGTCG

>LT962942|2|2|83345-83495|CRISPRCasFinder
CCCGCGCGAGCGGGAGTGACTCGGCGGC	GCGAGAGTGGTTCACGTCGGCCTGGATGTAAAG
CCCGCGCGAGCGGGAGCGACTCGGCGGC	CGACAGGCCGTCCGACCAGTCCTTCTTGAAGGA
CCCGCGTGAGCGGGAGTGACCCGACGTCG

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Crispr_ID: LT962942_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_3

83722-83872

Orphan

Consensus_repeat	Method
CCCGCGCGAGCGGGAGTGACTCGGCGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT962942_3

>merge|LT962942|3|83722-83872|CRISPRCasFinder
CCCGCGCGAGCGGGAGTGACTCGTAGGTCAGGGCGGCGAGTTGGGCGAGGCGGGGGGTAGGACCCGCAGGAGCGGAAGTGACTCGGCACATGGTCTCCTCCAAAGCCAGAGGCGTGTGCAGAGTCCGCGCCAGCGGGAGTGACCCGGCCTG

>LT962942|3|3|83722-83872|CRISPRCasFinder
CCCGCGCGAGCGGGAGTGACTCGTAGGT	CAGGGCGGCGAGTTGGGCGAGGCGGGGGGTAGGA
CCCGCAGGAGCGGAAGTGACTCGGCACA	TGGTCTCCTCCAAAGCCAGAGGCGTGTGCAGAG
TCCGCGCCAGCGGGAGTGACCCGGCCTG

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Crispr_ID: LT962942_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_1

83057-83223

Orphan

Consensus_repeat	Method
CCCGCGCGAGCGGGAGTGACTCGGCGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT962942_1

>merge|LT962942|1|83057-83223|CRISPRCasFinder
CCCGCGCGAGCGAGAGTGACCCAGATTTTGTGGAGCCCGTCGGCGAGCCGTGCACGCATCCGCTCGGCGTGGTGGAGTCCGCGCGAGCGGGAGTGACTCGACGGTGATCGTCTTCGACGACTGCACCACCGAGCAACGCCCGCGCGAGCGGGAGTGACCCGTGGTCA

>LT962942|1|1|83057-83223|CRISPRCasFinder
CCCGCGCGAGCGAGAGTGACCCAGATTT	TGTGGAGCCCGTCGGCGAGCCGTGCACGCATCCGCTCGGCGTGGTGGAG
TCCGCGCGAGCGGGAGTGACTCGACGGT	GATCGTCTTCGACGACTGCACCACCGAGCAACG
CCCGCGCGAGCGGGAGTGACCCGTGGTCA

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Crispr_ID: LT962942_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_5

3669891-3669968

Orphan

Consensus_repeat	Method
CGGGGCGTGGGTCAGGGGGTGGCGTCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_5

>merge|LT962942|5|3669891-3669968|CRISPRCasFinder
CGGGGCGTGGGTCAGGGGGTGGCGTCGGGCGTGGCGCCGGGGTGTGGGTCAGGGGGTGGCGTCGGGTGTGACGTCGGG

>LT962942|5|4|3669891-3669968|CRISPRCasFinder
CGGGGCGTGGGTCAGGGGGTGGCGTCGGG	CGTGGCGCCGGGGTGTGGGT
CAGGGGGTGGCGTCGGGTGTGACGTCGGG

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Crispr_ID: LT962942_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_6

3889352-3889449

Orphan

Consensus_repeat	Method
GTCGTGGACGGCATCTTCGGCCCGCACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_6

>merge|LT962942|6|3889352-3889449|CRISPRCasFinder
GTCGTGGACGGCATCTTCGGCCCGCACACGGAACGCGCGGTCAGGGACCTCCAGAAGCGGGCGCGCCTGGTCGTGGACGGCATCATCGGCCCGCACAC

>LT962942|6|5|3889352-3889449|CRISPRCasFinder
GTCGTGGACGGCATCTTCGGCCCGCACAC	GGAACGCGCGGTCAGGGACCTCCAGAAGCGGGCGCGCCTG
GTCGTGGACGGCATCATCGGCCCGCACAC

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Crispr_ID: LT962942_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_7

4706256-4706363

Orphan

Consensus_repeat	Method
TTCCCGGGCGGCGGCCAGAACCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_7

>merge|LT962942|7|4706256-4706363|CRISPRCasFinder
TTCCCGGGCGGCGGCCAGAACCAGCAGAACGGCAACGGCAACGCCCGGGGCGGGCAGGGCAACGGCTTCCCCGGCGGCGGTTTCCCGGGCGGTGGCCAGAACCAGCAG

>LT962942|7|6|4706256-4706363|CRISPRCasFinder
TTCCCGGGCGGCGGCCAGAACCAGCAG	AACGGCAACGGCAACGCCCGGGGCGGGCAGGGCAACGGCTTCCCCGGCGGCGGT
TTCCCGGGCGGTGGCCAGAACCAGCAG

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Crispr_ID: LT962942_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_8

4753138-4753235

Orphan

Consensus_repeat	Method
CGCCAAGCCCGTCGGCCTCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_8

>merge|LT962942|8|4753138-4753235|CRISPRCasFinder
CGCCAAGCCCGTCGGCCTCCGCCACTTCGGCCGCCGCCGCCTCGGCCGTCGGCACCTCAGCCGCCGCCACCGCGACGCCAAGCCCGTCGGCCTCCGCC

>LT962942|8|7|4753138-4753235|CRISPRCasFinder
CGCCAAGCCCGTCGGCCTCCGCC	ACTTCGGCCGCCGCCGCCTCGGCCGTCGGCACCTCAGCCGCCGCCACCGCGA
CGCCAAGCCCGTCGGCCTCCGCC

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Crispr_ID: LT962942_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_9

4994055-4994140

Orphan

Consensus_repeat	Method
TGGTTCAAGAGCAGCTACAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_9

>merge|LT962942|9|4994055-4994140|CRISPRCasFinder
TGGTTCAAGAGCAGCTACAGCAGTGGCAGCGAGGGTGACTCCTGCGTCGAGGTGGCGCTGAGCTGGTTCAAGAGCAGCTACAGCAG

>LT962942|9|8|4994055-4994140|CRISPRCasFinder
TGGTTCAAGAGCAGCTACAGCAG	TGGCAGCGAGGGTGACTCCTGCGTCGAGGTGGCGCTGAGC
TGGTTCAAGAGCAGCTACAGCAG

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Crispr_ID: LT962942_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_10

5100547-5100684

Orphan

Consensus_repeat	Method
CCGTGGCGTGCAGGTCCT	CRT

3 spacers

The CRISPR arrays of LT962942_10

>merge|LT962942|10|5100547-5100684|CRT
ACGTGGCGTGCAGGTCCTTGGTCTCCAGCGGCTCGTCGGTGGCGTGCAGGTCCTGCGTCGTCACGGTCCCCTCCTCCGTGGCGTGCAGGTCCTCCGTCGAGGCCTGGCCGTCCGTGCCGCCCGTGGCGTGCAGGTCCT

>LT962942|10|1|5100547-5100684|CRT
ACGTGGCGTGCAGGTCCT	TGGTCTCCAGCGGCTCGT
CGGTGGCGTGCAGGTCCT	GCGTCGTCACGGTCCCCTCCT
CCGTGGCGTGCAGGTCCT	CCGTCGAGGCCTGGCCGTCCGTGCCGC
CCGTGGCGTGCAGGTCCT

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Crispr_ID: LT962942_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_11

5289661-5289746

Orphan

Consensus_repeat	Method
GGCCAGCCCGGATACGGGCAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_11

>merge|LT962942|11|5289661-5289746|CRISPRCasFinder
CAGCAGCCCGGATACGGCCAGCCCGGATACGGGCAGCCGCCGCAGGCGCCGTACGGGCAGCCGGGCCAGCCGGGATACGGGCAGCC

>LT962942|11|9|5289661-5289746|CRISPRCasFinder
CAGCAGCCCGGATACGGCCAGCC	CGGATACGGGCAGCCGCCGCAGGCGCCGTACGGGCAGCCG
GGCCAGCCGGGATACGGGCAGCC

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Crispr_ID: LT962942_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_12

5867746-5867847

Orphan

Consensus_repeat	Method
CGGCCCCGGTGGTGGTCAGGGCGGCGGCTACGGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_12

>merge|LT962942|12|5867746-5867847|CRISPRCasFinder
CGGCCCCGGTGGTGGTCAGGGCGGCGGCTACGGCTATCCGCAGCCCGGCGCCACCCAGGCCCCGCCCGGCCCCGGTGGTGGTCAGGGCGGTGGCTACGGCTA

>LT962942|12|10|5867746-5867847|CRISPRCasFinder
CGGCCCCGGTGGTGGTCAGGGCGGCGGCTACGGCTA	TCCGCAGCCCGGCGCCACCCAGGCCCCGCC
CGGCCCCGGTGGTGGTCAGGGCGGTGGCTACGGCTA

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Crispr_ID: LT962942_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT962942_13

6407321-6407422

Orphan

Consensus_repeat	Method
CCGGAGCCGCTGGTCAAGGTGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT962942_13

>merge|LT962942|13|6407321-6407422|CRISPRCasFinder
CCGGAGCCGCTGGTCAAGGTGCGCATCGACCCCCCGAAGCTGCCGAAGGTACGGCTCCTGCCGCGCCGCAAGCCGCGTCCGCAGCCGCTGGTCAAGGTGCGC

>LT962942|13|11|6407321-6407422|CRISPRCasFinder
CCGGAGCCGCTGGTCAAGGTGCGC	ATCGACCCCCCGAAGCTGCCGAAGGTACGGCTCCTGCCGCGCCGCAAGCCGCGT
CCGCAGCCGCTGGTCAAGGTGCGC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT962942_5	5.1\|3669920\|20\|LT962942\|CRISPRCasFinder	3669920-3669939	20	LT962942.1	6601893-6601912	2	0.9
LT962942_10	10.2\|5100601\|21\|LT962942\|CRT	5100601-5100621	21	LT962942.1	1190642-1190662	2	0.905

1. spacer 5.1|3669920|20|LT962942|CRISPRCasFinder matches to position: 6601893-6601912, mismatch: 2, identity: 0.9

cgtggcgccggggtgtgggt	CRISPR spacer
cgcggcgcctgggtgtgggt	Protospacer
**.****** **********

2. spacer 10.2|5100601|21|LT962942|CRT matches to position: 1190642-1190662, mismatch: 2, identity: 0.905

gcgtcgtcacggtcccctcct	CRISPR spacer
gcgccgtcacggtcgcctcct	Protospacer
***.********** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT962942_10	10.3\|5100640\|27\|LT962942\|CRT	5100640-5100666	27	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	265517-265543	5	0.815
LT962942_10	10.3\|5100640\|27\|LT962942\|CRT	5100640-5100666	27	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1833127-1833153	5	0.815
LT962942_10	10.3\|5100640\|27\|LT962942\|CRT	5100640-5100666	27	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	131291-131317	5	0.815
LT962942_1	1.2\|83162\|33\|LT962942\|CRISPRCasFinder	83162-83194	33	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	426834-426866	6	0.818
LT962942_12	12.1\|5867782\|30\|LT962942\|CRISPRCasFinder	5867782-5867811	30	NZ_CP035002	Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence	643128-643157	6	0.8
LT962942_12	12.1\|5867782\|30\|LT962942\|CRISPRCasFinder	5867782-5867811	30	NC_011371	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204, complete sequence	123820-123849	6	0.8
LT962942_12	12.1\|5867782\|30\|LT962942\|CRISPRCasFinder	5867782-5867811	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2497951-2497980	7	0.767
LT962942_12	12.1\|5867782\|30\|LT962942\|CRISPRCasFinder	5867782-5867811	30	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	331888-331917	7	0.767
LT962942_12	12.1\|5867782\|30\|LT962942\|CRISPRCasFinder	5867782-5867811	30	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	167110-167139	7	0.767
LT962942_12	12.1\|5867782\|30\|LT962942\|CRISPRCasFinder	5867782-5867811	30	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1289200-1289229	7	0.767
LT962942_4	4.1\|85471\|40\|LT962942\|PILER-CR	85471-85510	40	NZ_CP030863	Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence	81-120	8	0.8
LT962942_2	2.2\|83434\|33\|LT962942\|CRISPRCasFinder	83434-83466	33	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1827219-1827251	9	0.727
LT962942_3	3.1\|83750\|34\|LT962942\|CRISPRCasFinder	83750-83783	34	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	86097-86130	9	0.735
LT962942_3	3.1\|83750\|34\|LT962942\|CRISPRCasFinder	83750-83783	34	NZ_CP013003	Caulobacter henricii strain CB4 plasmid pCB4, complete sequence	59160-59193	9	0.735
LT962942_12	12.1\|5867782\|30\|LT962942\|CRISPRCasFinder	5867782-5867811	30	NZ_AP013104	Bradyrhizobium elkanii USDA 61 plasmid pBel61, complete sequence	93186-93215	9	0.7
LT962942_3	3.1\|83750\|34\|LT962942\|CRISPRCasFinder	83750-83783	34	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	581371-581404	10	0.706
LT962942_4	4.1\|85471\|40\|LT962942\|PILER-CR	85471-85510	40	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	7121-7160	10	0.75
LT962942_3	3.1\|83750\|34\|LT962942\|CRISPRCasFinder	83750-83783	34	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	99308-99341	11	0.676

1. spacer 10.3|5100640|27|LT962942|CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 5, identity: 0.815

ccgtcgaggcctggccgtccgtgccgc	CRISPR spacer
ccgccgcggcctggccgtccgtgcaca	Protospacer
***.** *****************

2. spacer 10.3|5100640|27|LT962942|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 5, identity: 0.815

ccgtcgaggcctggccgtccgtgccgc	CRISPR spacer
ccgccgcggcctggccgtccgtgcaca	Protospacer
***.** *****************

3. spacer 10.3|5100640|27|LT962942|CRT matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 5, identity: 0.815

ccgtcgaggcctggccgtccgtgccgc	CRISPR spacer
ccgtcgaggcggggccgtccgtgtccg	Protospacer
**********  ***********.*

4. spacer 1.2|83162|33|LT962942|CRISPRCasFinder matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 6, identity: 0.818

gatcgtcttcgacgactgcaccaccgagcaacg	CRISPR spacer
gatcgtcttcgacgacttcaccaccgagggcaa	Protospacer
***************** ********** .  .

5. spacer 12.1|5867782|30|LT962942|CRISPRCasFinder matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 6, identity: 0.8

tccgcagcccggcgccacccaggccccgcc	CRISPR spacer
tccgcagcttggcgccacccaggctttggc	Protospacer
********..**************...* *

6. spacer 12.1|5867782|30|LT962942|CRISPRCasFinder matches to NC_011371 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204, complete sequence) position: , mismatch: 6, identity: 0.8

tccgcagcccggcgccacccaggccccgcc	CRISPR spacer
tccgcagcttggcgccacccaggctttggc	Protospacer
********..**************...* *

7. spacer 12.1|5867782|30|LT962942|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tccgcagcccggcgccacccaggccccgcc	CRISPR spacer
ccagcagcaccgcgccacccaggccccaga	Protospacer
.* ***** * ****************.

8. spacer 12.1|5867782|30|LT962942|CRISPRCasFinder matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

tccgcagcccggcgccacccaggccccgcc	CRISPR spacer
gccgcagcccggcggcacgcaggccgttgc	Protospacer
 ************* *** ****** .  *

9. spacer 12.1|5867782|30|LT962942|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.767

tccgcagcccggcgccacccaggccccgcc	CRISPR spacer
tccgcagctcggcgccacgcaggcgctcgt	Protospacer
********.********* ***** *.  .

10. spacer 12.1|5867782|30|LT962942|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.767

tccgcagcccggcgccacccaggccccgcc	CRISPR spacer
cccgcagctcggcgcgacccaggcgcttgc	Protospacer
.*******.****** ******** *.  *

11. spacer 4.1|85471|40|LT962942|PILER-CR matches to NZ_CP030863 (Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.8

atacggcctcggcctccttcaccatgtggtggaacacttg	CRISPR spacer
cgaacgcctcggcctccttcaccacgtggtggaagaccag	Protospacer
  *  *******************.********* **. *

12. spacer 2.2|83434|33|LT962942|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.727

cgacaggccgtccgaccagtccttcttgaagga	CRISPR spacer
ttagcggacgttcgaccagtccttcttgaccgt	Protospacer
. *  ** ***.*****************  *

13. spacer 3.1|83750|34|LT962942|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 9, identity: 0.735

cagggcggcgagttgggcgaggcggggggtagga	CRISPR spacer
caggtcggcgagttgggcgaggccggcaacgagg	Protospacer
**** ****************** ** .....*.

14. spacer 3.1|83750|34|LT962942|CRISPRCasFinder matches to NZ_CP013003 (Caulobacter henricii strain CB4 plasmid pCB4, complete sequence) position: , mismatch: 9, identity: 0.735

cagggcggcgagttgggcgaggcggggggtagga---	CRISPR spacer
gcggggggtgagttgggcgaggc---gggcaagatct	Protospacer
  *** **.**************   ***.*.**

15. spacer 12.1|5867782|30|LT962942|CRISPRCasFinder matches to NZ_AP013104 (Bradyrhizobium elkanii USDA 61 plasmid pBel61, complete sequence) position: , mismatch: 9, identity: 0.7

tccgcagcccggcgccacccaggccccgcc	CRISPR spacer
cggccagcccggcgccagccaggccgagat	Protospacer
.   ************* *******  * .

16. spacer 3.1|83750|34|LT962942|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

cagggcggcgagttgggcgaggcggggggtagga	CRISPR spacer
gagcacggcgagctgggcgaggcgggaggccatg	Protospacer
 ** .*******.*************.**. . .

17. spacer 4.1|85471|40|LT962942|PILER-CR matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.75

-atacggcctcggcctccttcaccatgtggtggaacacttg	CRISPR spacer
catg-agcctcggcgtccttcaccatgtgctggatctcgcc	Protospacer
 **. .******** ************** **** * * .

18. spacer 3.1|83750|34|LT962942|CRISPRCasFinder matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.676

cagggcggcgagttgggcgaggcggggggtagga	CRISPR spacer
gtgcgcggcgagctgggcgaggcggcggccgtcc	Protospacer
  * ********.************ ** ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage