CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT985188	Micropruina glycogenica isolate 1 genome assembly, chromosome: 1	15 crisprs	PrimPol,csa3,DEDDh,DinG,WYL,cas3	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LT985188_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_2

278386-278544

Orphan

Consensus_repeat	Method
GTGCGACCGCTGACCGGACGGCTGGGCTCAGTGCGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_2

>merge|LT985188|2|278386-278544|CRISPRCasFinder
GTGCTACCGCTGACCGGACGGCTGGGCTCAGTGCGTCCGCCCGTGCGACCGCTGACCGGACGGCTGGGCTCAGTGCGTCCGCCCGTGCGACCGCTCACGGGACGGCTCAGTGCGTCCACCGGTGCGACCGCTGACCGGACGGCTGGGCTCAGCGCGTCC

>LT985188|2|2|278386-278544|CRISPRCasFinder
GTGCTACCGCTGACCGGACGGCTGGGCTCAGTGCGTCC	GCCCGTGCGACCGCTGACCGGACGGCTGGGCTCAGTGCGTCCGCCCGTGCGACCGCTCACGGGACGGCTCAGTGCGTCCACCG
GTGCGACCGCTGACCGGACGGCTGGGCTCAGCGCGTCC

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD85305.1\|270788_271565_+\|transposase	unknown	unknown	gnl\|CDD\|366760
LT985188.1\|SPD85311.1\|276542_277139_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|224228
LT985188.1\|SPD85310.1\|275767_276553_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|213235
LT985188.1\|SPD85309.1\|274994_275771_-\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378937
LT985188.1\|SPD85313.1\|277371_278133_-\|Carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
LT985188.1\|SPD85319.1\|280756_280948_+\|Membrane-protein-(fragment)	unknown	unknown	unknown
LT985188.1\|SPD85308.1\|273913_274975_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|376909
LT985188.1\|SPD85318.1\|280592_280769_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85315.1\|278556_279252_-\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|153123
LT985188.1\|SPD85324.1\|284707_285511_+\|putative-ABC-transporter-ATP-binding-protein-MTBMA_c05830	unknown	unknown	gnl\|CDD\|213192
LT985188.1\|SPD85320.1\|281187_282219_+\|Pyrimidine-specific-ribonucleoside-hydrolase-RihA	unknown	unknown	gnl\|CDD\|239119
LT985188.1\|SPD85306.1\|271923_273267_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|367155
LT985188.1\|SPD85304.1\|269163_270792_+\|transposase	unknown	unknown	gnl\|CDD\|366234
LT985188.1\|SPD85321.1\|282269_283073_+\|conserved-membrane-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85312.1\|277161_277371_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85322.1\|283080_283860_+\|Energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
LT985188.1\|SPD85316.1\|279357_280056_+\|Zinc-transporter,-ZIP-family	unknown	unknown	gnl\|CDD\|223505
LT985188.1\|SPD85307.1\|273504_273864_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85317.1\|280072_280498_-\|Dienelactone-hydrolase-(fragment)	unknown	unknown	gnl\|CDD\|315383
LT985188.1\|SPD85323.1\|283856_284711_+\|Cobalt-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD85305.1\|270788_271565_+\|transposase	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.70413e-56
LT985188.1\|SPD85311.1\|276542_277139_-\|protein-of-unknown-function	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.63261e-13
LT985188.1\|SPD85310.1\|275767_276553_-\|conserved-protein-of-unknown-function	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	4.25327e-89
LT985188.1\|SPD85309.1\|274994_275771_-\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.24949e-14
LT985188.1\|SPD85313.1\|277371_278133_-\|Carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	1.52561e-15
LT985188.1\|SPD85308.1\|273913_274975_-\|conserved-protein-of-unknown-function	gnl\|CDD\|376909	pfam02732, ERCC4, ERCC4 domain. This domain is a family of nucleases. The family includes EME1 which is an essential component of a Holliday junction resolvase. EME1 interacts with MUS81 to form a DNA structure-specific endonuclease.	1.11508e-11
LT985188.1\|SPD85315.1\|278556_279252_-\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	6.17209e-31
LT985188.1\|SPD85324.1\|284707_285511_+\|putative-ABC-transporter-ATP-binding-protein-MTBMA_c05830	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	2.04436e-92
LT985188.1\|SPD85320.1\|281187_282219_+\|Pyrimidine-specific-ribonucleoside-hydrolase-RihA	gnl\|CDD\|239119	cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	2.25192e-138
LT985188.1\|SPD85306.1\|271923_273267_+\|conserved-protein-of-unknown-function	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	1.86362e-29
LT985188.1\|SPD85304.1\|269163_270792_+\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	6.97719e-15
LT985188.1\|SPD85322.1\|283080_283860_+\|Energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	3.83127e-29
LT985188.1\|SPD85316.1\|279357_280056_+\|Zinc-transporter,-ZIP-family	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	2.60948e-10
LT985188.1\|SPD85317.1\|280072_280498_-\|Dienelactone-hydrolase-(fragment)	gnl\|CDD\|315383	pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family contains a diverse range of alpha/beta hydrolase enzymes.	2.7348e-06
LT985188.1\|SPD85323.1\|283856_284711_+\|Cobalt-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.73104e-86

>LT985188.1|SPD85313.1|277371_278133_-|Carboxymuconolactone-decarboxylase-family-protein
MSDRLDHSERVYADLFGPRDTSAVDNDPEFGRILRTYIFGDLFALGELDYRTRELITVTTLATLQSLPQLRGHLNAALTIGVEAVELREVIYQLAPFMGFPRTLNAIAVLNEVLSSRGVDLPLPDQGTTTDDDRHERGSDIQQSLYGNRMADSLASLPEPFSQAVPRLLTEWAFGDFATRGGLDTPTRELLILCALAALNLEPQVRSHVAGALAAGNSPETVLAALVHLSGYAGFPLAVNAIRIVAERLSAEQ
>LT985188.1|SPD85312.1|277161_277371_-|protein-of-unknown-function
MVETSPLVELVGTSPLVELVETSPPVELVETSPPVELDETLAHERSRPARPASLVTSVDTMPAPSYIND
>LT985188.1|SPD85311.1|276542_277139_-|protein-of-unknown-function
MSPRTTDKHERRAQLVAAAAEAFARQGVAATSVADIVRDAGVAQGTFYLYFTSKDDVILAVVEGVAETMLTSLQGRLDTAEMPAKDRLRAFGRLLADLARDGELSDVTDFIHRAENRTLHDRFAEHLLPRLLPLMEQLVADGVTDGSFRVADPRAAAWFVLGGLQSVELAGTSHAALPEAIDAAIDLALAALGASDDH
>LT985188.1|SPD85310.1|275767_276553_-|conserved-protein-of-unknown-function
MTTEAVLRTESLTKHYGRVRAVDGLDLEVRRGEIYGLLGRNGAGKTTTIRMLLGLIRPTSGTVQVFGHPIGYDQRWLRRVGFLVESATAYPNLTVAENLDIHRRLTGAARSSVAEAIGRLRLDDYADRRAGRLSLGNKQRLSLARALLHAPELLILDEPANGLDPAGIVEVRELLRELAASGVTVFMSSHLLAEVAHLADRIGIVDAGRLVEEASRHELATRARAYVRDAFTEAERAEALITADLERYFLARTAPSERPVR
>LT985188.1|SPD85309.1|274994_275771_-|conserved-membrane-protein-of-unknown-function
MIGTVVVTEFIKLRRSVVPWITLAVMLAGPWVLALFMWIIREPERAASLGLLGTKANLAGLEATWPAFGNYVSVLVGAAGMLVLAFVVAHLFGREYADGTAKNMLALPVPRAAFGVAKLVVAACWWLVLVAAALAEALAIGWLMALPGLSTDLGWQMVRATLLGAAASYLLVPVVAWVAVASRNILAPVGFALGMLLLGDVVGHTGWAGWFPWSIVPLLTGMTGDAAPLASTSGLVLAATFAAGLIGTGVQLRLADNP
>LT985188.1|SPD85308.1|273913_274975_-|conserved-protein-of-unknown-function
MVDDFLVARNPEPGSTLPFLIRLPLGPSGIVLKAREAWPRTAKVYCHRAEWPDDAEIVERTAVRSCVRRGAAIDLVLERGRENRSQFVLTHVKGREAIFWQTARTAKQARPQGRPPTARAGGRESLDIVVDSHERYAWKFSTLPVTLSKAALAAGDYGVLADGVLVASVERKSLADLVSTLTGGKMRYLLAALAALPHAAVVVEDRYSKVFSLTQVRPLVVAEGLAECQARFPSVPIFFAETRALAEQWTFRFLAASLDEFENESAAAARIEALPSVELPNIELPRLDAPGRGRRRAQPRSGNSEGSTGGPSPAVIRAWAMAEGLPVADRGRLRPETVAAYQAAHEAGSEQGA
>LT985188.1|SPD85307.1|273504_273864_-|protein-of-unknown-function
MHAAHQQFGAKPLGTVRHLGRRRDLPFLRAAHQQAGAKPLGTMRHLGGRRNLPILHAAHRQAGAKPLGTMRHLGGRRDLPILHAAPRQAGAKPLGTLRHPGGRRHLHWAGRRQACVIYQ
>LT985188.1|SPD85306.1|271923_273267_+|conserved-protein-of-unknown-function
MELTFEQLDDAALVAVIDAAVSALTDDRVRLQNGQQRLQLLVDAVRLDARLSAWRSALAAEVEQSGVAVAEHGTSTVTWLADAVCMTRRAAGRLVIEGQRLTRFPTVAAAAAEGCVLPEQAQAITQVLDGLPTDFDTGQLRQAEELMVGFADTHNAHDLRSLSRYLVEVLDPDTVEAREAARLERDLRAARHNRHLTFAHDHHGSVRIRGSLPVADAEPFIKLIASYQAQASRALDRLDPLAPNLTPAQRRADALMALVDRHLANALAPSHGGDRPRVVVTLSYDVMVKTATDAGLLRGELIGTGEPISPSTLRQLLCDADVMPAVLGSASQVLDVGRSQRLVTAPIRAALEIRDQGCVFPGCDKQPTGCHAHHIVPWWAGGITALHNLVLVCPHHHGIVEPSHNPTADRWQVRLPANGPAHVIPPRRVDPQQTPRIHNRFTAPMRT
>LT985188.1|SPD85305.1|270788_271565_+|transposase
MTAIIPPLPADLNDGLKRLKMAAMRQLAPELLITAKTQRWNPEEFLRTLIEAEIASRDASNIRTRMRQASFPVTKTLDEFDIAASSIPPATFDYLASLEWIRAAENVCLIGPAGTGKSHTLIGLGIAAVEHGHRVRYFTAAELVETLYRGLADNSVGKLIDSLLRNDLVLVDELGFAPLDDTGAQLLFRFVAASYERRSLGIASHWPFESWGRFLPEHTTAVSMLDRLLHHCHTVVTNGDSYRMRQARTTGGTRPKTS
>LT985188.1|SPD85304.1|269163_270792_+|transposase
MTDSEALRGEGGGANQSPSTTQGFPLKNAKERMDVIAAYRDVGTYRGAAAVCGTTHKTVRRIIEAHQAATEGVVPVAVVRPRNYDQVIELVADRVKSTSGRVSAKRLLPAARAAGYAGSDRNFRRLVATVKKQWRHDQARAGGRRPAVWSPGEVLAIDWGEEVLAGRKLLVFCAVLGWSRFRFVRFATDQQLATTLGMLAECFEVLSGVPKTVLADRMGCLKGGVVANVVVPSPDYVRFATHYRFRPDFCHAADPESKGIVERLVGYAKQDLLVPLELDDDPWVDGIAGLNVRAHAWCEEVNAALHSEIQAVPAERLAAEAEVLGELPSLRLEIGPKPVSRKVDKLSCIRFGSARYSVPNQLIGTTVTVMVDERDRMLRVIEPVTGQIHAEHALVAPGETSIVDAHYGRPRPETPRRAARAKTPAEREFLALGPVAQRFLTGAAAAGVTKLGSEINEILMLAAAHGTDALLAALERAVRFSRWRAADVRSILATNGYAPHPTPAGAAFTSAVVLTLPSVPTRSLADYALQPAIEGNEGGEVS
>LT985188.1|SPD85315.1|278556_279252_-|conserved-membrane-protein-of-unknown-function
MEAASDWRHRLALRLDPASVRAQVENVNDGILAISGFSQGLQSVGELQNLWSPIMLMASVAGALSIAAVALSSALADRDAEQLAAEEEQRRSELAPDEQIAELAEYYESKGVTPQTARLVAEELTAVDGLSAQLEIEGFDERTTLGGAIVTSFWAGMAFLLGASVPILISVVAPGGWNDEATAVAVAIALALTSVVLARLGHTRIWQTLLRSVFIGLAALGSSYLVGAALL
>LT985188.1|SPD85316.1|279357_280056_+|Zinc-transporter,-ZIP-family
MWSALGWGALAAVSVVLGALLGLARRWHDGVIGFVLAFGAGALLSSVAYELVEDGIHNGGPVPVGFGLAAGALAFYFADRALERRTSGSSGGLPLALGALLDGIPEQLVLGLGLGAGGGISLALLGSVFVSNLPEGLGSAAAMREAGRTKGQIVTLWAIVAGCCTASTVAGFALAEVLPAAAATGINGFAAGALLVMLTDSMIPDAEKKAPGKAGLATVLGFAAAMSLSLLQ
>LT985188.1|SPD85317.1|280072_280498_-|Dienelactone-hydrolase-(fragment)
MLGHSMGGGAALLAAAADQSIDTVAVLAAAETNPSATTAARSVTVPALFVVGSSDTVVKPNTTRAMYDAKRSPATWVSITGGYHCGFLDSSSFFGLGCDKGSISRSTQVGLSNDMLGDWLDATLKSGATFVRPAGTTGESK
>LT985188.1|SPD85318.1|280592_280769_-|protein-of-unknown-function
MPPTSVHPGPIGPNPRQPTRRRALGHTRIWQTLLRSVFIGLATPWCTSMSTVRRSGDG
>LT985188.1|SPD85319.1|280756_280948_+|Membrane-protein-(fragment)
MWAALGWGRLAAISLGINGFAAGALLVMLTDSMIPDAEKKAPGRAGLETVLGFAAAMSLSLLQ
>LT985188.1|SPD85320.1|281187_282219_+|Pyrimidine-specific-ribonucleoside-hydrolase-RihA
MPTTPLIVDVDTGIDDSLALLYLLASPEAELVGITCTAGNVNARQVAINNLAWLELCNGPDVEVALGAEVPIIAPLMTTEETHGPQGIGYAELPAPTRTLSTRHATQVWIDNARKRPGEITGLITGPLTNLALAVKLEPELPLLLKRIVVMGGAFNHPGNTTPTTEWNVAVDPDAAKIVFDAFSVVPDDRRPVICALDVTERIEMHPHHIAELARAAGSTPDEIISPDDEPGRRSQASNKVIRHLSDAVRFYMEFHRLYEQGFLAHMHDPFAAAVALDPSLATVREATVDVELAGTLTRGQTVADWRGMWGQRPNAAIVVDTDPAEFFRRTIDRVGALARALG
>LT985188.1|SPD85321.1|282269_283073_+|conserved-membrane-protein-of-unknown-function
MTSSATATPNKSRNLALVVGGTVIVLATYLYLVISQPTELQTSSTAPAGLIAMAGYLVGAVLIAAGSIHRLSTTTIAMIPVAIALNIVVGQLVAVIGLPVYLDSMGTVLVAALAGPAAGVVTGILTNVIWGLTLSPIVLPFAVVQVVIGMMAGYAARGGLFRKPWLPPIAGALTGVVAAMISAPISAFIFGGATGGGTGALVGMFQAMGQSLLGATTMQGLLSDPLDKLISFTVVYLVLSALPARFKQRFPFVRQYQVFGKAPAAKA
>LT985188.1|SPD85322.1|283080_283860_+|Energy-coupling-factor-transporter-transmembrane-protein-EcfT
MSSTLYVERPSAVHRLNPVTKLVALLCVIVVVFAIPQWWASGAVLLLVIVPAAVISGCGGALARIGGQILLPLLVVLVLVQGLTFPGGQTVLWRWGPLALTTEGLMFAATIGARIVVLVLSSVLLVLTTHPGDLMSALTEAGMSPRFAYIISSTLQLIPSFRARADSILLAQQARGLAVPRNPVRRLGVLMPLLAPLVLGMFTDVEERSTAMEARGFGSTAKRTTLTPVRDSRAQKVARWVMPAVALLAVVLQVGWGLL
>LT985188.1|SPD85323.1|283856_284711_+|Cobalt-ABC-transporter-ATP-binding-protein
MIRLDDVGYTYPDAPAPALQHVSLEVPPGSITGVVGASGAGKTTLAKVIAGFIPQVEGGELTGSATVDGRNLAELSLVEAVSKVGLVIQNPFNQISGARYTVRGEIAFGLENLGTPRAEMAAGVDEVAALLRITDLLDRSPYALSGGQMQLVAIASMLVLRTPVLVMDEPTSQLDPAGTRLVFSVLDTLEEAGVTVVIFEHKLELLQAHADRLLVLADRTIALAGTPTEVLADERLSGWGIGATRYTRAARLARERGLIGAEVPLPVSFDQAAAVFGTGAGGAR
>LT985188.1|SPD85324.1|284707_285511_+|putative-ABC-transporter-ATP-binding-protein-MTBMA_c05830
MSAVRFENVRFSYPSGVEALRGVSFEVPTGQRLAIVGQNGAGKTTLVRHLNGIFQPTSGSVYVADAATTGRAIAELAASVGYVFQNPDEQIFASTVIADVEFGPRNLGCSADEARSRAMASLATVGLAAEADTHPLHLSLSERKRVALAGVLAMQTPIVVLDEPTTGQDAGGVAMVAGVVEALASAGRTVIAITHDMDFAAEHFDRVVVMAKGEVLADGPPVVVFGDAEALARAAVEPPQLFRLAAHLGWPDRPLTVEGFVDAFERR

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Crispr_ID: LT985188_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_3

476500-476579

Orphan

Consensus_repeat	Method
ACGCCGGAATCTCCCAGCCGGTCCAC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of LT985188_3

>merge|LT985188|3|476500-476579|CRISPRCasFinder
ACGCCGGAATCTCCCAGCCGGTCCACTGACGGTCATCGTTCGTCATTCCGGCGAACGCCGGAATCTCCCAGCTGGTCCAC

>LT985188|3|3|476500-476579|CRISPRCasFinder
ACGCCGGAATCTCCCAGCCGGTCCAC	TGACGGTCATCGTTCGTCATTCCGGCGA
ACGCCGGAATCTCCCAGCTGGTCCAC

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD85506.1\|469792_470290_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|271189
LT985188.1\|SPD85516.1\|479099_480164_+\|Carbohydrate-ABC-transporter-membrane-protein-1,-CUT1-family	unknown	unknown	gnl\|CDD\|224096
LT985188.1\|SPD85517.1\|480160_481075_+\|Trehalose-transport-system-permease-protein-SugB	unknown	unknown	gnl\|CDD\|223472
LT985188.1\|SPD85520.1\|482572_483052_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85522.1\|483029_484502_+\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|372031
LT985188.1\|SPD85519.1\|482263_482455_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85509.1\|472158_472947_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|379312
LT985188.1\|SPD85508.1\|470950_472162_-\|Glycosyltransferase-family-28-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|340817
LT985188.1\|SPD85513.1\|476582_477104_-\|putative-Peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
LT985188.1\|SPD85504.1\|468541_469339_-\|Arsenite-methyltransferase	unknown	unknown	gnl\|CDD\|237007
LT985188.1\|SPD85521.1\|482863_483013_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85511.1\|473801_474224_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|197670
LT985188.1\|SPD85512.1\|474220_476263_+\|Multidrug-transporter	unknown	unknown	gnl\|CDD\|340868
LT985188.1\|SPD85515.1\|477701_479015_+\|Multiple-sugar-transport-system-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270453
LT985188.1\|SPD85514.1\|477185_477488_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378834
LT985188.1\|SPD85503.1\|468302_468539_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|379063
LT985188.1\|SPD85507.1\|469824_470463_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|271189
LT985188.1\|SPD85505.1\|469347_469647_-\|conserved-protein-of-unknown-function	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LT985188.1\|SPD85510.1\|472939_473713_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378981
LT985188.1\|SPD85518.1\|481243_481666_+\|exported-protein-of-unknown-function	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD85506.1\|469792_470290_-\|protein-of-unknown-function	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.6573e-08
LT985188.1\|SPD85516.1\|479099_480164_+\|Carbohydrate-ABC-transporter-membrane-protein-1,-CUT1-family	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.01295e-68
LT985188.1\|SPD85517.1\|480160_481075_+\|Trehalose-transport-system-permease-protein-SugB	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.82907e-82
LT985188.1\|SPD85522.1\|483029_484502_+\|protein-of-unknown-function	gnl\|CDD\|372031	pfam12307, DUF3631, Protein of unknown function (DUF3631). This protein is found in bacteria. Proteins in this family are typically between 180 to 701 amino acids in length.	4.70751e-12
LT985188.1\|SPD85509.1\|472158_472947_-\|conserved-protein-of-unknown-function	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.39429e-22
LT985188.1\|SPD85508.1\|470950_472162_-\|Glycosyltransferase-family-28-N-terminal-domain-protein	gnl\|CDD\|340817	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins. This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.	2.64645e-45
LT985188.1\|SPD85513.1\|476582_477104_-\|putative-Peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	3.03435e-57
LT985188.1\|SPD85504.1\|468541_469339_-\|Arsenite-methyltransferase	gnl\|CDD\|237007	PRK11873, arsM, arsenite methyltransferase.	1.71297e-100
LT985188.1\|SPD85511.1\|473801_474224_+\|conserved-protein-of-unknown-function	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.27411e-13
LT985188.1\|SPD85512.1\|474220_476263_+\|Multidrug-transporter	gnl\|CDD\|340868	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters. This family includes Fusarium sporotrichioides trichothecene efflux pump (TRI12), which may play a role in F. sporotrichioides self-protection against trichothecenes. TRI12 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.67304e-73
LT985188.1\|SPD85515.1\|477701_479015_+\|Multiple-sugar-transport-system-substrate-binding-protein	gnl\|CDD\|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.18461e-133
LT985188.1\|SPD85514.1\|477185_477488_+\|conserved-protein-of-unknown-function	gnl\|CDD\|378834	pfam12277, DUF3618, Protein of unknown function (DUF3618). This domain family is found in bacteria, and is approximately 50 amino acids in length.	8.37596e-07
LT985188.1\|SPD85503.1\|468302_468539_+\|Thioredoxin	gnl\|CDD\|379063	pfam13192, Thioredoxin_3, Thioredoxin domain.	7.65889e-29
LT985188.1\|SPD85507.1\|469824_470463_-\|protein-of-unknown-function	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.12098e-12
LT985188.1\|SPD85505.1\|469347_469647_-\|conserved-protein-of-unknown-function	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.18535e-14
LT985188.1\|SPD85510.1\|472939_473713_-\|conserved-protein-of-unknown-function	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	4.57602e-12

>LT985188.1|SPD85512.1|474220_476263_+|Multidrug-transporter
MTDAPTQFRLTPQSRRIFIGLLLGMLVASISQTIVGPAMPRIVAELGGMDHYSWVATAAMLVSAISVPVVGKLSDLYGRRPFYLGGLAIFIAGSILAGSAQNFWWLVGARAIQGLGMGIIMPLSQTIVGDIIPPRQRGKYQGWMGVVFGVTSVAGPLAGGVITDSLGWRWLFFVAVPVGLVALFVIARFLDLPHEPRKAVIDTWGIVTMSLGVTAVLLAVSWGGTSYPWSSPVIIGLFVAGTLLLTAFVFVELRVPEPVVPLRLFRTSIFTFANLGAFGMSMVMFGSIIYVPIYAQGVLAVNASTSGLITLPLMLGLVLVGLLAGITITRTGRYKELMLVGAVLLGVGVLLLARLSATSSAWEVVGGVGLIGVGLGALSQQYTLVVQNAVARKDLGVATAALQFFRNVGATVGTAIFGTVLSSGLDDAIFRHLPPQLAATMPHGTINAGSVLDSSVITSLPVEVISAVRAGLADQIALIFWVSVPITVFVFICTLLIKPMELRDTLNSPEDAGRELLDTMAQSSGDVAPVLSGTGSGARTRERLLGIQLAIVAESAARGDRPLLTRAVTELGSGDLSRGLTLLHCTAEMLTSDDPDVAASTERYACALADRVRSGGDTMSEDLRRQIAVAAATAPRGVVLDSIERSVADRHEGVDIGKLKHAANDLMAALLVDLASDRRG
>LT985188.1|SPD85511.1|473801_474224_+|conserved-protein-of-unknown-function
MQLSEELTRLFTLLTRITSDHQRSAELARPDFQVLGRLVRAEALRPSDLAQLEGLDQSTLSRRVAALAERGLIERQSDPDDRRAQFLRVTEAGHAAYNAEQARRVQLVTDAVAHWSSPERAELVRLLHELNESLQQRILP
>LT985188.1|SPD85510.1|472939_473713_-|conserved-protein-of-unknown-function
MVDFSRGDDLSAARFDGTNLRGARFVGADLSGVVMRGVQVENLDIDAPWLPDGDHLLINGVDVIGFVEGELNRRFPGREQRCADTPEGLRAAWLVLQDAWSAAVQRAADLSPAAVEASVDGEWTFAQTLRHLVLATDTWLGRAVLELEQPFHPIGQAMPNADEDGLDLSLFMTERPTYDEVLRVRAERVAMVTDFLADVTAADLAVERRNPWAPQYPETTLSCLQVILEEEWEHLRYALRDLDAIANATNDEGAADE
>LT985188.1|SPD85509.1|472158_472947_-|conserved-protein-of-unknown-function
MSEDLPEHVAENRRYWDGMAADWVDRGEKAWAQQPQWGEWQIPNAELPLLPDDMTGLRAIELGCGTGYLSAWMRRLGASVYAIDNSEGQLSTARRLAEVHGLPDIEWVHGDAEHVPQPDQCFDFAISEYGAAIWCEPNAWLSEAHRLLRHGGELVFLGNHPLAMVCSPMDGSLPVTDRLERSYFDLGRLDWRDAVDEPGGIEFNLPISAWLRLFDRIGFDVIDYREIQAPVAATGQRGAVTAEWAKRFPSEQVWRLMKRRLP
>LT985188.1|SPD85508.1|470950_472162_-|Glycosyltransferase-family-28-N-terminal-domain-protein
MKALVITTGSRGDVQPFIALAAGLNAHGHEAVVAAPRRFEALSGSAAVAFVGLDDSIFALQEELSGSGVGAALTGVRRARPYLRRWLSDLTGLVDVQPNVIVCTRKTLGGTALAERLGVPVVPAQLIPLEPATAQYPIPLAPAWWPSAANKLSWRASGALEAPWRSMVAQWRIDQLGLSARGASYGSLVDQVGVLSAWSPHLLPAPADWPAHAAPLGFWTLPGPVEPLPDALGRFLDAGEPPVLVGFGSMLDADPARLSDEVIAGLRMAGRRGVVVSGWAGLGAAVNGDDIFVVDQADYRALLPRVAVAVHHGGVGTAAAALTAGIPQVVRPYFGDQPFWASRLHAMGVAPAPLGRLRSAALAERLTQAVALAPTAQQVADRLAGEDGVAAGVDRLERLIEDH
>LT985188.1|SPD85507.1|469824_470463_-|protein-of-unknown-function
MAGAVESELVDSNPVALPSRTKVRTKRAKNIEPLTVAQVADLARAMPARLSMAVLLGCWCAPRYGELSELRRQDVDLKEGVLKVSRGMVKVKGGYFVGTKTDAGVRRVHVPPALLPELKTHLDTYVDAGPEALLLPAPNGGHRIRPPSRGSSRRLLWLRVAPTRHHPRCATPAPHWPPPSEPPPPTSWRALATPLRAWPCTTSTTWTGRTRG
>LT985188.1|SPD85506.1|469792_470290_-|protein-of-unknown-function
MVRSSVRGAVGTATPGRRSQGGRAQGVSRYGEGQGRLLRWHQDRCRRPSGPRSASPAAGAEDSSRHLCGRGTGGAAAPGTQRRPPHSSSFARLVEKAALAAGRPDATPPTLRHTGASLATSVGATTADVMARLGHATPGMAMHYQHNLDGADARVADGLSRILEG
>LT985188.1|SPD85505.1|469347_469647_-|conserved-protein-of-unknown-function
MLAGALKALADPARLRLLSLIRATAVGRATTGVLADRLGLSQPTVTHHLGALFDAGFLERERDGRKTWYWVNIAGLQAIQQLLDPAPTKQLLTIETKRK
>LT985188.1|SPD85504.1|468541_469339_-|Arsenite-methyltransferase
MSDSDVVERVRERYAAAARAAMGTGRRTLDVLDDLDGGGSGCCGGAGCCSGTAETEVFGSALYDAEQATQVPELGVTASLGCGNPTAVADLNPGERVLDLGSGGGLDVLLSARRVGPDGFAYGVDMTDEMLALARENAAKAGATNVEFLKGRIEQVPLPEGAVDVVISNCVINLSVDKPKVLAEMFRVLSPGGRVGVSDVVAEDHLSVADRTERGSHVGCVAGALSRQEYIEGLTAAGFTGIEVRFTHEVAPQMHGAVIRAVKPA
>LT985188.1|SPD85503.1|468302_468539_+|Thioredoxin
MHVKILGSGCANCVNLEKATRRAVDELGLDATFEKVTDYADIAAYGIMRTPGLVVDEQVLLSGRVPTAGQVKDLLSAR
>LT985188.1|SPD85513.1|476582_477104_-|putative-Peroxiredoxin
MSRHDPKLSGMSKLAVGDVAPAFTLPDPDGHAVSLADYAGRRVIVYFFPAAMTPGCTIQAVDFSGALAEIAAAGFDVVGISPDGVEKLAKFRAQEDLGFPLLADPDKSVLSAYGAFGRKLLYGKEIEGVIRSTFVVSVDDAGVGHVDVAQYNVKATGHVAKLRRELKIPDLAG
>LT985188.1|SPD85514.1|477185_477488_+|conserved-protein-of-unknown-function
MADTTRSKQDIEAEIAAARARLADNVADLVNQMHPKAIVQRGIDDARGFAATEFENAKAQVIDDRGQLRTDRVLLIGGAVAGVVTFVLLVRGILKGVRRG
>LT985188.1|SPD85515.1|477701_479015_+|Multiple-sugar-transport-system-substrate-binding-protein
MTQPRTTRRVIAAALSVGALLATAACSSGTAASPAASGSASAATGANWDETGPITYAQGKDTSGNLKAQIDQWNKENPNEQVTFRELSDNADEQRSEMIKRAQAKSGEFTVMSVDVVWTSEFAANGWLTELPADKFNTTGFLKAAVDSATYFNKLYAMPSSSDGALLYYRKDLLDKAGVQAPTTWDEMQQACDKVLPGQSGMSCYGGQFQKYEGLTCNFAEAVNSAGGAILGEDGKPTVNSAEAVAGLTWMQNGFKSGMIPKEAITWKEEESRQAFQTGKILFLRNWPYVYNLASAKDSKVAGKFDVAPIPGKTGPGVSTLGGHSYGISAFAKNKGTAMKWINWMLRPENQKDQLLKASSAPVLESLYSDPELVAKFGYLPTLLKSIQNAKPRPKAVAYGDVTLAIQDAAYAPLNDVRKSPQTALDDLQAKLTTLIK
>LT985188.1|SPD85516.1|479099_480164_+|Carbohydrate-ABC-transporter-membrane-protein-1,-CUT1-family
MADSSATTNKKKNPLSDGQGTLAALLISPTMAVILFVVGIPILMSLRESVFRKNSGIDPATGMVAQGESFVGLQNFTDIFANPTLVTGNWGTIDRLLNSFLNTTWFTIICVLFETALGVAMALIMAKAFRGKGLVRAAILVPWAIPTVVSAKMWGLIFDADGVMNKVIGHQILWLADGPQSQWAIIIADVWKTAPFIGLLTLAGLQTIPAEVYEAAKVDGASAWQQFTRITLPMVKPALVVAVLFRTLDTMRMFDLPAAMIGFGKYYVETVSVLAYVENNNLRYGSAAAYSIILFIYIVFVAFLFVRLLGADVVGDEEVKAIAAQRKRQKAAAKAAGTKAALAKSTVTSGSASS
>LT985188.1|SPD85517.1|480160_481075_+|Trehalose-transport-system-permease-protein-SugB
MSTAQAHVTAAEIAELNKPKRDGKYWAGSIAGIVGMAFIIIYCILPFYWMIVSSLRLPSDGRSTDFVPNPASIENYVAVFAPQNMFGQAVLNSLIVSTTTTVLTLLFGILAAYALARLRFAAKGIVLSIIIACSMFPGITLVIPLFKLFSGNYPGFEWLNWMNTYQALVIPTLSFGLPLCVWNLTAFFRQLPVELEQAAMVDGCTPGQAFAKVILPLAAPGVFTTAIITFIAVWNDYMIALQFGTTPEMYTSVVALSKFTGQYGYDTPWGTIMAAGVLITVPLLVAVLIFQRRIVAGLTAGGVK
>LT985188.1|SPD85518.1|481243_481666_+|exported-protein-of-unknown-function
MASRFGLSVAAVVLTGLVSAASMQPATASSAPATPPTPEKGECTITVKAVVNGDVGGNYTKIRCDRAKNVQLTVEVTTYGASNDTKRRVHKWATLTGQREDQLPIALIATRKLEAESVVCYDTPGFRKCRSRISSVSNPG
>LT985188.1|SPD85519.1|482263_482455_-|protein-of-unknown-function
MFSVPTASPRYSAAAGGLSGVRSSLGIAVLKVMVVPLRDWLRAHVETPRRAKVRGSASAMPCP
>LT985188.1|SPD85520.1|482572_483052_+|protein-of-unknown-function
MSICGPYDHARWLDCAAGLPRAERIVAKYMHDRADQSGLVTGLSTNALRNDAAGLRLTRDDAARAFQALRRQHRLYDIASEAAHHDGVPRTYQLRTNSSPVVTRQVEPMPMHRPGANVPKYRANKLGILELVEDGSADGTEDEYDDHSRNASRDDDAAA
>LT985188.1|SPD85521.1|482863_483013_-|protein-of-unknown-function
MVVVFILCAVGGPILDKLKNPEFVGPVLGHVRARSVHRHRLDLARHHWG
>LT985188.1|SPD85522.1|483029_484502_+|protein-of-unknown-function
MTMTQRPKRVGYRAMHYRVATERGPAWTETCADCGEGADEWSYDHLDPAELEAEDAANLGAPYSLDVEHYAPRCGSCHARFDKQMARERQGIVDDAAVMTMIEDGAEVGPVMPIEFGWYLRKFYRETRGMPDDPLSDLRELLGMYISTQDKADLDVLALWIAHTHLAARGVGTVTPRLSITAPSYGAGKSTALDFVRRLSHRGELITSTVSDALLPRLLQTEGMVTVCIDEADRVLKAENAGTMSVLNAGWQRGATTWVNQPASDGGWKPAKIETFAPVAIAANGTRLAADVRQRMIAVRLIRSDDMPEARWDGALQGVDDRLRARLGAMAERASHDVRVRNVRIPDGLEGRDRDRWSLLLATARAVGGPWVTKAEAMALADRDARAAEAAALGVAPNHQLAFDLFAVWREGETTVSTTELVERLIVHSPELWGVPSGKVLTAHSLSYRLREFYGVTPEQRNRVRGYSLSDIRKVWRAVSIPYDTEAPTE

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Crispr_ID: LT985188_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_4

713742-713855

Orphan

Consensus_repeat	Method
TTCGTCATCCCGGCGAACGCCGGGATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_4

>merge|LT985188|4|713742-713855|CRISPRCasFinder
TTCGTCATCCCGGCGAACGCCGGGATCTCGCAACTGCACGGAGAGGGTCCTGCCCGGTGGGATCTCAACACGCTTGATCTGCAGTTTCGTCATCCCGGCGAAGCCGGGATCTCA

>LT985188|4|4|713742-713855|CRISPRCasFinder
TTCGTCATCCCGGCGAACGCCGGGATCTC	GCAACTGCACGGAGAGGGTCCTGCCCGGTGGGATCTCAACACGCTTGATCTGCAGT
TTCGTCATCCCGGCGAAGCCGGGATCTCA

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD85748.1\|708874_709858_-\|Aminoglycoside-phosphotransferase	unknown	unknown	gnl\|CDD\|270702
LT985188.1\|SPD85745.1\|707133_707586_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|226947
LT985188.1\|SPD85747.1\|708027_708864_-\|Glyoxylase,-beta-lactamase-superfamily-II	unknown	unknown	gnl\|CDD\|293840
LT985188.1\|SPD85761.1\|722646_723138_-\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85756.1\|717353_718820_-\|conserved-exported-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|379528
LT985188.1\|SPD85760.1\|722415_722628_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85743.1\|705475_706330_+\|conserved-membrane-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD85757.1\|718849_719452_-\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|379819
LT985188.1\|SPD85755.1\|716573_717233_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|380093
LT985188.1\|SPD85762.1\|723317_724118_+\|Protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
LT985188.1\|SPD85744.1\|706313_707129_-\|putative-PaaX-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225864
LT985188.1\|SPD85751.1\|711453_712629_+\|co-factor-of-molecular-chaperone	unknown	unknown	gnl\|CDD\|237654
LT985188.1\|SPD85758.1\|719542_720601_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|132866
LT985188.1\|SPD85749.1\|709910_710291_-\|Transmembrane-protein	unknown	unknown	gnl\|CDD\|377753
LT985188.1\|SPD85754.1\|715252_716500_+\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|340883
LT985188.1\|SPD85746.1\|707649_707910_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|224126
LT985188.1\|SPD85752.1\|712780_713512_+\|Ribosomal-RNA-small-subunit-methyltransferase-E	unknown	unknown	gnl\|CDD\|367950
LT985188.1\|SPD85750.1\|710435_711452_+\|Heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
LT985188.1\|SPD85753.1\|713947_715165_+\|Queuine-tRNA-ribosyltransferase	unknown	unknown	gnl\|CDD\|234642
LT985188.1\|SPD85759.1\|720665_722255_+\|transposase	unknown	unknown	gnl\|CDD\|372705

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD85748.1\|708874_709858_-\|Aminoglycoside-phosphotransferase	gnl\|CDD\|270702	cd05153, HomoserineK_II, Type II Homoserine Kinase. This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	5.72842e-40
LT985188.1\|SPD85745.1\|707133_707586_-\|protein-of-unknown-function	gnl\|CDD\|226947	COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair].	2.77419e-16
LT985188.1\|SPD85747.1\|708027_708864_-\|Glyoxylase,-beta-lactamase-superfamily-II	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.50357e-48
LT985188.1\|SPD85756.1\|717353_718820_-\|conserved-exported-protein-of-unknown-function	gnl\|CDD\|379528	pfam14262, Cthe_2159, Carbohydrate-binding domain-containing protein Cthe_2159. Cthe_2159 from Clostridium thermocellum is the first representative of a novel family of cellulose and/or acid-sugar binding beta-helix proteins that share structural similarities with polysaccharide lyases.	2.5225e-72
LT985188.1\|SPD85757.1\|718849_719452_-\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|379819	pfam16316, DUF4956, Domain of unknown function (DUF4956). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	1.20755e-64
LT985188.1\|SPD85755.1\|716573_717233_-\|conserved-protein-of-unknown-function	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	4.35574e-14
LT985188.1\|SPD85762.1\|723317_724118_+\|Protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	5.08086e-64
LT985188.1\|SPD85744.1\|706313_707129_-\|putative-PaaX-family-transcriptional-regulator	gnl\|CDD\|225864	COG3327, PaaX, Phenylacetic acid-responsive transcriptional repressor [Transcription].	6.38775e-15
LT985188.1\|SPD85751.1\|711453_712629_+\|co-factor-of-molecular-chaperone	gnl\|CDD\|237654	PRK14278, PRK14278, chaperone protein DnaJ; Provisional.	1.93089e-167
LT985188.1\|SPD85758.1\|719542_720601_+\|conserved-protein-of-unknown-function	gnl\|CDD\|132866	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.	3.51428e-68
LT985188.1\|SPD85749.1\|709910_710291_-\|Transmembrane-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	5.18605e-27
LT985188.1\|SPD85754.1\|715252_716500_+\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.9925e-17
LT985188.1\|SPD85746.1\|707649_707910_-\|protein-of-unknown-function	gnl\|CDD\|224126	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only].	7.36313e-09
LT985188.1\|SPD85752.1\|712780_713512_+\|Ribosomal-RNA-small-subunit-methyltransferase-E	gnl\|CDD\|367950	pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.	5.15705e-63
LT985188.1\|SPD85750.1\|710435_711452_+\|Heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	2.64371e-140
LT985188.1\|SPD85753.1\|713947_715165_+\|Queuine-tRNA-ribosyltransferase	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.74624e-178
LT985188.1\|SPD85759.1\|720665_722255_+\|transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.48438e-22

>LT985188.1|SPD85752.1|712780_713512_+|Ribosomal-RNA-small-subunit-methyltransferase-E
MTDAMFLADLDDPRVGDQVAVTGDEGRHAAIVRRIRKGEVVLVSDGIGTAIRGPVLTSDVNGLVVEVAEVLTAEPRTVRYTVVQALAKGDRSELALEMLTELGVDEVVPWQSTRSVVKWPPDKVERALARWRSIVREATKQSRRFRVPRVSPPLTTAELALRVPEPALTLVLHEGATEWISQVTPPVEGEVMLIVGPEGGLTPEELELFAEAGGRQVLVADGVLRTSTAGTVALAQLQALERA
>LT985188.1|SPD85751.1|711453_712629_+|co-factor-of-molecular-chaperone
MTKDYYDVLGIARDASADEIKKAYRRLAMQYHPDVADTPDAAEKFKEIGEAYEVLHDSNKRAMYDRGVDPRGNGFSGAQGFGFPGGSAAGFDFTNLVDAMFGQAGGRGPRSRVRRGQDALVRLSLTLADAAFGVTKPLRVDTAVVCGTCHGSGAKDGSEPVTCTTCHGQGDVTQVQRTFLGDVRTTTPCPACRGYGTVIPHPCGECSGEGRVRSSRTINVKIPAGVNAGNRIHLEGQGEVGPGGGPAGDLYVELSVEPHETFKRNGDDLEVVVRVPMTAAALGTEVLLPTLEAERDDFDPEQATVRVSVPSGTQSGTRIAVAGRGVPRLRGSGRGELGVTLLVQTPSRLDDHQRDLLRQLAEARGENKAEVSMERHHKSGVFSWLKDAFTQ
>LT985188.1|SPD85750.1|710435_711452_+|Heat-inducible-transcription-repressor-HrcA
MLDDRKLDILRAIVTDYVSSQEPVGSRALVDRHNLGVSPATVRNDMAVLEEEGYITQPHTSAGRIPTDKGYRLFVDRLGTVKPLSLAERRAITTFMAGAIDIDDVVRRTVRLLAQITQQVAIVQYPVLTSATVRLIELLTLAPGRGLAIVVNSSGRVDQRQLDLGAASDEQVSELRGRLNAALVGHPTARVPDLLVALTDEVGPELGPLAAVVGAALIDIVSADPATRVVVGGVPNLTRFGDQFETTVKPVLEALEEQVVLLRLLGEAGGSADVTVRIGSENPYQPLQSTSVVASAYSHGDDVWASMGIVGPTRMDYPSTMASVRAVARYVGRILAEG
>LT985188.1|SPD85749.1|709910_710291_-|Transmembrane-protein
MRLVALVFAVLAALMHLYIFWMESLRWERPETRKVFGTSPEQAATTRRLAYNQGFYNLFLALTAGAGVVLFWWPVVSNTLLIVGLGSMVLAALVLITNDRRMARAALVQGMFPALALAFLGASALS
>LT985188.1|SPD85748.1|708874_709858_-|Aminoglycoside-phosphotransferase
MLSRTAQIGRMRRVALAALPHYDLPSGTLTFVGHGENTTFRHDSPAGRFLLRVHRPQRHGRDADPALAVESELAWLTALNADTDLAVPEPLSTREGAATVLATAGDETRVVSMLHWQHGRIHEDSPRPVHLRRLGAAMAALHDHAEHWTPPQPFARIDWSHESFFGDVMVYGGLPASAVWELFPTDLRGRFERLSDQLATILAAEPDVGLIHADLHLGNAVFEGERVKLIDFDDCGTGHRLYDLAVAVWEQRDEDDYDDFRDALLTGYGSVRDIDVTHLDDFIALRQFAFQIWYTGMAQVNPAFAARVEKVNDWSHAMLDLVAAGYA
>LT985188.1|SPD85747.1|708027_708864_-|Glyoxylase,-beta-lactamase-superfamily-II
MDFSLTPFAELRSGIWRAIAQPAAVNVVLIAGSSGSVVVDTGSSPAQGRAIRASAEEILPVPLVGAVVTHAHFDHFYGLAAFDDLPTYGHESLEAALQADQVAAEAADLGFDPEELRAPNRPLALARMIDLGDRHVEIVHFGPGHTAGDVVVIVPDADVIVTGDLYEQSAPPAMGADCHLKAWPVALDGILGLVNERTLLVPGHGEPFDRVFAFTQRAEISAVYGQVEYLIAQGVKLDDALKTGEWQYDDDTIAAVLPIAYAQLAAEGKVPRPKLRLL
>LT985188.1|SPD85746.1|707649_707910_-|protein-of-unknown-function
METTRLRPLTLDASAAAADRLYESFSDYADRLGLTLYPHQDEAIIELLGGSHVILTTPTGSGKSLVATAAIHADLSTDACRSTPPR
>LT985188.1|SPD85745.1|707133_707586_-|protein-of-unknown-function
MLTGAAALNASAPIIACTAQVLANIALREGTAADVGLVVMDEFHYYGELDRGWAWQVPLVELTSVQFLLMWATLGGLLHPYVRRPPLAERRDAGEGGGEDLQGRRSSPQSSKRLIRFSVDASREAGGVRARPPADWSRVGSARTPARRIA
>LT985188.1|SPD85744.1|706313_707129_-|putative-PaaX-family-transcriptional-regulator
MAQRDISAVPYCFGAAEAVGLPGPVLSSLLLALGHTPTGAKALLHRLSGWGLVSSTRHGRVAVHRLAGQLAEGYQQVVSPQPQRVWGGTFHTLVYDIPESRRRERDQLRAAAVGHGYRQLRPGVLVSPYDRSAGFLPAFPGVVAGQLRLSTEAAAVVAERCWDLAASAVRMDALASDLETAAGVAAEPREAFVRLHALMSPAVSLLLANAQLPQELLGGAGLARTERLARAMGTVSDRLGPQAAAYVDEVVEASGHAALVEREPRSVSPRS
>LT985188.1|SPD85743.1|705475_706330_+|conserved-membrane-protein-of-unknown-function
MARFVMDVSPFVCQGGRMTPQQRHALVRNNLVAYLLGGGLMVLIHEVVHWLVGAALGYRSTMFSYGVTQQPDPGGWHAAITALSADIASLVLGLAMALWRPLEARGGFAHLLWLWLGFTSLQEGITYWVLTPFGAGDTAMAAAALGWPIWAMFVAMAAGIAGMFVSARLFAQPVATVAGDEIAARRAMAWWPWLLAIPFLLVHAFVMFSLQAMSLSVGEVVVVAMAGVSNGVFAPMSFIFARQAHQPAGWQPPRLSPWPVAGIVAFVVLVALQVLMRGGITIGG
>LT985188.1|SPD85753.1|713947_715165_+|Queuine-tRNA-ribosyltransferase
MSDFGFEVTATLPDGRGRAGTIHTPHGTINTPAFVAVGTKATVKAVLPEAVRDLGAQAVLANAYHLYLQPGSDIVDAAGGLGAFMNWPGPTFTDSGGFQVMSLGAGFKKVLAMDTVGLADDDVIAEGKTRLAHVDDDGVTFTSHLNGDRHRFTPEVSMRIQHELGADIMFAFDELTTLMNTRGYQEQSVARTQAWAVRCLAAHAELTRSRADKPYQALFGVVQGAQYEDLRRRAARDLAALEVDGASFDGFGIGGALEKENLGTIVGWVADELPRDKPRHLLGISEPDDFFAAVAAGADTFDCVMPSRVARNAALYTRDGRFNVNTAAHRRAFEPIEPGCDCYTCAHYTRAYLHHLFKAKEMLASTLATIHNERFTVRLVDDIRASIEAGDFDAFRTEFLGRFYR
>LT985188.1|SPD85754.1|715252_716500_+|conserved-membrane-protein-of-unknown-function
MAVSKLAPRAAYYLFEGGTALLHALALTLMLVFQVQVVGLTPFQLVIMGTAMEVALLLFEIPTGAVADLYSRRRSVLIGTTIIAVSLLLQGGWPYFWPTLAGQMIWGLGYTFISGAAQAWITDEIGEDHVQPVFTRATQVVLTCSVAGTVVAGLIGQIDLRLPMLVAGAGFVLLALALVAVMPEHGFRPVPKAERETWAHLGTTVRAGLNLARRRGVVRSMLWVSLLVGLSSEAVDRLWTAHVLEQFTLPSLFGLTGAAAWFSVFALVGTLVSLLASLVANRLAGRRLNAQRPAVLLAGLVVLQVAGIVGFAVLGSLWPALVAIWVRDAARVVSEPVQAAWLNREVESGVRATTLSIVSQANALGEAAGGPPMGAVAGRFGIAAGLLGCGVILAPAAGLFLGLRSHTRAEGKAVS
>LT985188.1|SPD85755.1|716573_717233_-|conserved-protein-of-unknown-function
MTSTTRPFWLSVFLDLPGTTFDPAVAFWAAVTGYSLSRLRGAHHEFGTLVPSVGDDYLRVQRVGDEAARLHLDVHVPDPDAAANRAVELGAAPLADPGLGYRVLRSPAGLTFCLVTHLSHTRPPATTWPDGNRSLIDQVALDLPQDMHDAEAAFWAALLHEPVRSFGDSEFSAIDRRPELPLRVLLQRLDEPTGPARAHLDLATDDVAAEVARHLALGA
>LT985188.1|SPD85756.1|717353_718820_-|conserved-exported-protein-of-unknown-function
MNALTNMKTWIAGGLAAAVLAVGGCTAATVAGTTTTTSTSTGTSTSATLALTADHDSDSDHTWDTSKEVTIDLSNPTATDGVTVKDGVITITAAGAYRLSGTLADGQVVVDTEDSGSVYLILDNASITNSDGSAIVIDKADLALIVLADGTTNTVTDGSSYAATGDDDPNAAIWSDPNLTILGEGSLTVNGNYNDGINSSDGLVIVSGTITVTAKDDGLRGKDYLVINDGTVTVTSGGDSLKSDNEEDSGLGYVSVAAGTVTLDSGDDGVDAWTAITISGGTTTVTKSVEGLEARVINVSGGTTTVTASDDGVNATDSASTGGDMQAQTGTLLTVSGGKLTVNADGDGLDSNGSITMSGGTVVVNGPTENGNGAFDYNGTFTITGGSLAAGGSAGMAQAPGTDSSQKSLMISVEAAAGSTIEVKDSSGATVATYTTTKQIASLVVSNENIKEGETYTVYVNGTASGTTDTSQVTTNSGPGGGGGGRRP
>LT985188.1|SPD85757.1|718849_719452_-|conserved-membrane-protein-of-unknown-function
MNLVSLGIDLVAIVLLAFGIYFQRYRRREVMVAMIGLNVAVVAVSAALSSASVGLGLGLGLFGVLSIIRLRSSELSHSEVAYYFVSLAMGLLAGLAFDPTWLGQLLIGLLVVVMFLADHPALFRGYRHQVLTLDRAITDEKELQTELATLLGAEIKQFTVQRVDQVRDTTLVDVRYRVRNAAPLARDTATEPTAHDALAN
>LT985188.1|SPD85758.1|719542_720601_+|conserved-protein-of-unknown-function
MRVSGLHQAVKYDGRMARRVALVLGSGGARGYAQIGAIQVLHERGYTISGVAGTSMGAVIGGLQAAGKLDDYTDWVTSLGPRDVLRLVDPSPFGAGALKIERVLARMTEMLGGARIEDLPIPYTAIATDLGARREVWFTSGPVDVAIRASVAIPGVIAPIMVNGRLLADGGLLNPVPVDAVTGVHADLTVAVSLSGWSPRDFSATPARASSEQRPPAEWVDTFKQTAAGIFSNEWVASVLARFGRGAEPAVDAAEALDAAPLVQPQVEPAPPGLGFTAVAGLALDTMGGLITRFRLAAQPPDVLVTVPTDAAGLLDFHRADELIELGRRLTTEALDAREPEPDEPPALTSES
>LT985188.1|SPD85759.1|720665_722255_+|transposase
MVQGEWSPQRDVLDVESLAGHLLAEGSVFRFLAEHRQRLFPDALFADLFPSGRGRPSIPGEVIASVIVLQSLHGLSDREAVEALTFDLRWKAACGFPIDAKGFDASSLTVWRRRLASSGRPQRIFEVVRDVIAATGAVKGRQRRALDSTILDDAVARQDTVTQLIAQVRRVGREVPGAHQVIGERCTRLAALTGQGYDSTAKPRIAWDDAQARDELVTALVNDALALLDGLDVETITAAGGKPAEAIALLALVAGQDVEPAEDSDGTDGQWRIARRVAPDRVISTVDPEARHAHKTVERRQDGFKAHVVVEPDTGLATMVELTKAAGPDNSDATVGARLVVADPTIDTGAVEVLGDSAYATGDMLHTLEGKGWAALVKPWPTRPAVAGGFGNDDFTHDPAAGTLTCPAGITKTITKTRKAVFGIACRACPFRQRCTTAAKGRTIQLHPHDLLQRQHRQRALDADFQATYRQHRPMVERTIAWLTRGSRKVPYRGVDRNNNWLHNRIAAINLRRLLALGLTHGPTGWTIA
>LT985188.1|SPD85760.1|722415_722628_-|protein-of-unknown-function
MSETPGSRGSRYDQRPSIDSSSRRTPGSHGQEATQLLAEGAQPVEIPACAGLTVRAGDGMPRSLLNKAPF
>LT985188.1|SPD85761.1|722646_723138_-|conserved-protein-of-unknown-function
MALSDRLIAIFARRNPAIWEILGGGPQGPGGWSKVALNPQPLPPREAFAALNPQPLPPAFRYGAAVAAELVRIATTAHVLRVAFEPGDDICPPPRDWPPIPFPWPPEPDPHPWRDDDFTIDYALGLAIALEASSGAWAKLDSAAGLERVHEVAVKTAGAEQVG
>LT985188.1|SPD85762.1|723317_724118_+|Protein-phosphatase
MPHVVVGARTDVGHHRSLNEDALLVGERVWVVADGMGGHAAGDVASSLAVQSLRALEGAEPLTPADVPAAVERTNDALVEYGGEHPEARGMGTTVTGVAEVSIGGVAHWLVFNVGDSRTYRYVGGELHRVTIDHSEVEELLAQGLIDADEARVHPARHIITRSVGMQPTPSVDVWVLPQTAGERFLLCSDGLNGELTDEQIAAVLAEHADPRAAASALVDAVLSTEARDNVTVIVIDVVGAEPDAGDESTVPQPQLTHAPAAGGDR

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Crispr_ID: LT985188_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_5

1209616-1209689

Orphan

Consensus_repeat	Method
CGCCACTTTCTGGTTGAAATGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_5

>merge|LT985188|5|1209616-1209689|CRISPRCasFinder
CGCCACTTTCTGGTTGAAATGGAGGCGCTCATGAAGCGCCCTCGCCGAAGTCGCCACTTTCTGGTTGAAATAGA

>LT985188|5|5|1209616-1209689|CRISPRCasFinder
CGCCACTTTCTGGTTGAAATGGA	GGCGCTCATGAAGCGCCCTCGCCGAAGT
CGCCACTTTCTGGTTGAAATAGA

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD86267.1\|1215283_1217524_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|274674
LT985188.1\|SPD86257.1\|1205416_1206802_+\|Serine/threonine-protein-phosphatase-PrpC-(modular-protein)	unknown	unknown	gnl\|CDD\|223704
LT985188.1\|SPD86264.1\|1211954_1212179_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378634
LT985188.1\|SPD86262.1\|1210422_1211202_-\|Disulfide-bond-formation-protein-DsbA	unknown	unknown	gnl\|CDD\|372611
LT985188.1\|SPD86253.1\|1199138_1200746_+\|ATPase-family-associated-with-various-cellular-activities-(AAA)	unknown	unknown	gnl\|CDD\|163057
LT985188.1\|SPD86261.1\|1209809_1210433_-\|Vitamin-K-epoxide-reductase	unknown	unknown	gnl\|CDD\|240605
LT985188.1\|SPD86251.1\|1197318_1198545_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377557
LT985188.1\|SPD86270.1\|1219153_1219765_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|293792
LT985188.1\|SPD86252.1\|1198587_1199142_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86265.1\|1212485_1214081_+\|Superfamily-II-DNA-and-RNA-helicase	unknown	unknown	gnl\|CDD\|223587
LT985188.1\|SPD86259.1\|1208085_1209033_+\|Zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|238017
LT985188.1\|SPD86268.1\|1217560_1217872_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86255.1\|1201995_1203126_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86258.1\|1206803_1208084_+\|von-Willebrand-factor-type-A-domain-containing-protein	unknown	unknown	gnl\|CDD\|375997
LT985188.1\|SPD86254.1\|1200742_1201999_+\|membrane-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86256.1\|1203122_1205420_+\|Serine/threonine-protein-kinase-PknG	unknown	unknown	gnl\|CDD\|270916
LT985188.1\|SPD86263.1\|1211333_1211786_-\|membrane-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86250.1\|1196948_1197152_+\|cold-shock-protein,-molecular-chaperone,-RNA-helicase-co-factor	unknown	unknown	gnl\|CDD\|224197
LT985188.1\|SPD86269.1\|1218071_1219154_+\|S-(hydroxymethyl)mycothiol-dehydrogenase	unknown	unknown	gnl\|CDD\|132492
LT985188.1\|SPD86266.1\|1214483_1215287_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|380318

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD86269.1\|1218071_1219154_+\|S-(hydroxymethyl)mycothiol-dehydrogenase	gnl\|CDD\|132492	TIGR03451, S-hydroxymethylmycothiol_dehydrogenase, S-(hydroxymethyl)mycothiol dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. [Cellular processes, Detoxification].	0
LT985188.1\|SPD86257.1\|1205416_1206802_+\|Serine/threonine-protein-phosphatase-PrpC-(modular-protein)	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	4.56095e-40
LT985188.1\|SPD86262.1\|1210422_1211202_-\|Disulfide-bond-formation-protein-DsbA	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	2.0103e-20
LT985188.1\|SPD86253.1\|1199138_1200746_+\|ATPase-family-associated-with-various-cellular-activities-(AAA)	gnl\|CDD\|163057	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination].	7.44882e-90
LT985188.1\|SPD86264.1\|1211954_1212179_+\|conserved-protein-of-unknown-function	gnl\|CDD\|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	6.76974e-27
LT985188.1\|SPD86251.1\|1197318_1198545_+\|conserved-protein-of-unknown-function	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	2.46068e-99
LT985188.1\|SPD86270.1\|1219153_1219765_+\|conserved-protein-of-unknown-function	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	2.92633e-48
LT985188.1\|SPD86266.1\|1214483_1215287_-\|conserved-protein-of-unknown-function	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	6.73352e-39
LT985188.1\|SPD86265.1\|1212485_1214081_+\|Superfamily-II-DNA-and-RNA-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	6.01639e-148
LT985188.1\|SPD86259.1\|1208085_1209033_+\|Zinc-ribbon-domain-containing-protein	gnl\|CDD\|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	2.65433e-10
LT985188.1\|SPD86267.1\|1215283_1217524_-\|conserved-protein-of-unknown-function	gnl\|CDD\|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	2.36652e-67
LT985188.1\|SPD86258.1\|1206803_1208084_+\|von-Willebrand-factor-type-A-domain-containing-protein	gnl\|CDD\|375997	pfam18571, VWA_3_C, von Willebrand factor type A C-terminal domain. This is the C-terminal domain of von Willebrand factor type A pfam13768.	1.95842e-14
LT985188.1\|SPD86256.1\|1203122_1205420_+\|Serine/threonine-protein-kinase-PknG	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.7379e-55
LT985188.1\|SPD86250.1\|1196948_1197152_+\|cold-shock-protein,-molecular-chaperone,-RNA-helicase-co-factor	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.50556e-30
LT985188.1\|SPD86261.1\|1209809_1210433_-\|Vitamin-K-epoxide-reductase	gnl\|CDD\|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	2.86337e-52

>LT985188.1|SPD86259.1|1208085_1209033_+|Zinc-ribbon-domain-containing-protein
MAICPAGHTSSSNDYCDTCGLPIEQGQAPAAAPQPSAPEGAQCPNCHTVNAPDALFCEACGYDFTTGTLPRTAVEPSSVEPSPAELVESPEVEDSQVEPTAPVELAETTAPDEPDEASAPAVEPVETPAAPADPDEALDAPDDTPAPDQPWEAPAAPDPSPGPLPPHAGRLLHPQPTSVDWVAEVWIDPDWYATQGSSDALPSAGLPEVVPLRSASALIGRVSVSRNIHPDIDCDPDTGVSRRHAQISTDGTRWWIEDLESANGTFIGSPAGPLPTDPIGRGRVEFAPDQRIYVGGWTRIVIRAATDDEREAFTV
>LT985188.1|SPD86258.1|1206803_1208084_+|von-Willebrand-factor-type-A-domain-containing-protein
MALFTSAVYQNEFLPDGGTDVNAIVTIACSGAGAAGQTGSGDAGEIIIVDTSGSMGTANMQAAKQAAMVALDHILDGTYFAVVAGNHKAYLAYPMVQSGAGMVRMDARTRAEARRAISFFRSDGGTAMGNWLNLARALFDSIGNLAQKHAILLTDGENHNETPQQLDAAIRNSIGQFQVDCRGVGVDWKVPEIRSIAQALLGTVDIIPNPSQLGQAFAELMQKSMGRGVARADLRVWIPQGAQVLFVRQVSPTVEDLSTRGVPVNPLTMAYPTGSWGDEERDYHLQVRLPAKSVGQEQLAARVQLAVGTEVLTQGLVKAKWSSDTNLTAQINPEVAHYTGQTELAVAIQEGLAAKASGDERTATTKLGRAAQLAVRTGNAEATAKLRKVVDIDNAETGTVRLKRGVDKADEMALDTASTKTTRIRG
>LT985188.1|SPD86257.1|1205416_1206802_+|Serine/threonine-protein-phosphatase-PrpC-(modular-protein)
MTNDHPDTSSRRTPGPPNPTPAPAPSLDPSSRRTPGSPDRNPTAQPDPSSRRAPGSPDPNPAWPLWATDQRAGELAQQQPQPDAQEFSTLALAAPCPRCLKPVRPDERYCENCGWDVHPEVGALPGPSDSSEATVKLNRPQQSRPACVECGGQVDSDGYCQTCGTKAPSPRDRFEASPADWVGGVCDRGVVHARNEDAMALWAAPGDERNAVLVVCDGVTSSQDSDVASLAAAERARDVLAASQPAGLAVTASHDAALDAALVDAAAQANAAVLATTAADSVNAASCTFAAAVVHGDRVHWASLGDSRIYVLGAESVQLSTDDSVAEELIRAGSSRHDAETGPQAHAITRWLGRDADDIVPRTGTHQVTGDSWLVVCSDGLWNYASEPSALAAQVATAAEPGGSPTQIAARLVKWANAQGGKDNVTVALARLTATLNEAAGADEAPATAVQPAPPIVEEKI
>LT985188.1|SPD86256.1|1203122_1205420_+|Serine/threonine-protein-kinase-PknG
MKCRQPGCTGTIVDGYCDVCGMPGNATTMPVGRGVPGRKPSATASGPCRQPGCTGQIIDGYCDTCGMPPDSALAPSSSSVTKASVQLGSTALGSARATSFGVRPARRPQSPSRQRMGRIGQGLTVVPPAPAVDPAKAVMVKAELPEDKRICPNCGAHVGRSRDDAAGRSDGFCPKCGAPYSFSPKLAAGDLVAGQYEVVGPLAHGGMGWVYLARDKNVSDRWVVLKGLLNTGDADTLRATLSEQQFLAQVEHPLIVEIYNFVSHENNGYIVMEYVGGRSLKQLLKQRMEANGGNYDPLPVDQALAFLIEILPAFSYLHDLGLLYCDFKPDNVIQVGDSLKLIDLGGVRRSTDDESAIYGTVGYQAPEVATAGASIASDIFTIGRTLMVLCAEVPGYQSEFEFTTPPADQLPAFAQHDSLYRLLLKCCAPDPHDRFDSAEDLRVQMLGVLREVVATRTGITASTSVSSPLFEAPTVSSDRFEWQQLPQLRPDPFDPQAAWVASLEADPVERLGDLLRPPEVTTGVLLARCLAALETGNQRVLEQSVNTLLTNDPWEWRAVWMAGLGALLRGDPTNALSSFNAVYGQLPGELAPKLALAVACELAGQTDVAERLYRSCAATDANYVTPAGFGLARLRAARGDLAGSLAALELVPQTSRGYQESQKLKAEHLIRLGDDAAHLDEALKVLQHARLDERSQLGFESSIYERALQLAGSGAVRLGTTSYTAGNLRDRLETGYRRLAQLSADPAERAQLVDRANAVRVWSLL
>LT985188.1|SPD86255.1|1201995_1203126_+|conserved-protein-of-unknown-function
MSPVTAPTAPGRLNEPVQPQAMVGYLGELDAWVAARRSELAALDAEILARKLSALTADLQLSLALWQAVKSRYELLLVTWDSGRVGPAECARLSSLIWGRLDTGPAPSAQLAGMAVSLPEACRLSDALVAQLRQKLNLDPNAEQLARRLRDLRAQVERIRDQAATEPPAARPAAMAQVAGLAARVTELEGKRERGGDIGGLLGPLEIDAARFERDLIVGGARRRENRDALARARELTDDLTAREQALRQLVANTVAAVSPAPKYAVPDVAALGPLPNTRQAIDAYLGKLSQVSRAMQVVQDAYSGALAERDAQVGLVSALRAKAAALGFGADDDFTALVDRADALLQRRPAPMAVVRQLVPAAQAMLDWLAEGGAR
>LT985188.1|SPD86254.1|1200742_1201999_+|membrane-protein-of-unknown-function
MSATPVTTGRASAPVVGAPAPVPARRRSAPSSVRRLRGLQLGAVALILAFGAFAITALALSLTAASHASQSLTQYYRLADAQVQALQVQQSANTWALTPTSAVRQQLDQRLGTLATTLADAAAVSDDRDRVVPLTGALVSYAMTLQDALNAKGTDSAAIAAKADNQLTDDLITPLQAATAHAGDRVATDLTGNWKFWVLGGAVLAGAGLAAIGVALARASHRYLNIGLAAGLLCALVSAGVVWTVAGQAGTAASDFAGTSRAVLDNLTTARQSIHQARADELLSVGLQSAGGTYADRWSTGYNAAKNALADVPKSGTASNALLAYGTGHSTVANAIGKSQWAQAASAAVGSSAKAATSFDDLDTKLTALATSTRQPVTSSVTTLGTGVAGAIAGVIVFTLAGAGLTFWGVSRRIEEYR
>LT985188.1|SPD86253.1|1199138_1200746_+|ATPase-family-associated-with-various-cellular-activities-(AAA)
MTNPDLATSLDDLAAAARAAGVNDAAARIEGEQLAAAVSESAVGSFVDWCVATGRAISASEFMEAALRGRKFRASATPLVAQLHNVRSAHAVPYAKALAEVATAAALLGTPTPQSTGAAQGAASVQLSAAQGLTAGGPGLTGPRGDDTEFVRQAPQILSSVLGRMHDNQARMLDLRQLDPFGPGAIAGLGNTPAAGEPVESRLTAGEPQPPVQAAPPAEPAEPAEVPEPEEPQKSLDELLAELDGLVGLGRVKAEIHRQTAVLKVDAMRAKAGLKSPTITRHLVFVGNPGTGKTTVARLVAGIYRAVGLLSKGQLVEVDRSELVAGYLGQTAIKTAEVVAKAEGGVLFIDEAYSLNGDQYGEEAINTLVKEMEDKRNDLVVIVAGYPLPMSVFIAQNPGLASRFRTTIGFDDYTDAELEQIFTGMVAGADYDLGEGCLQTFRALLAQQTRDETFGNGRFARNVLEAAIGKHAWRLRDVTDPSLDQLRTLLPDDLQADAVPVVDWTGAPGAGLEPPSDPVGNAPAVAPPVQPGSTA
>LT985188.1|SPD86252.1|1198587_1199142_+|conserved-protein-of-unknown-function
MGFWDWLTGRAATPQPAPVPDVDPAPTQADITASLAGVDQLIGSGTLPSVVRSRAARVTALVRKTLPRLESLGLGSYDAYSVVATATDYLPEAIGAYLRLPRDWADSRPVENGKTPLLLLIDQLDLLGATMEKIYDAANATDAAALITHGRFLQERFGHPAAPVEMTLPPPTDQHPKPLDLERP
>LT985188.1|SPD86251.1|1197318_1198545_+|conserved-protein-of-unknown-function
MSSTTPSGGAAAAMPLQPPATLTLTVPEAPSAVVATQAPAMAPQVDARQVPVLDAKVDEFLGALDGAEAKSPTFTAQADAVRSMGDTDIRKAAETSNRLLNAPVRALKEGGLSEGSKVGQTLLQLRRTVEDLDPGQARGAKKFLGMIPFGDQMTDYFRRYQSSQQQLNGILHALRSGQDELTKDNVALNMEKQNLWTVMGRLNQYVYIAERLDARLSAQIAELQMTDPDKAKALSQDVLFYVRQKHQDLLTQLAVSIQSYLAIDIIIKNNIELIKGVDRASTTTISALRTAVIVAQALGNQKLVLDQITALNTTTSQMIQRTSEMLKENSARIQEQAASSTIGLEQLQAAFANIYQTMDSIDEFKARALDTMAQTIGVLEGEVVKSKDYLERVAQQDTRSQSMPQITI
>LT985188.1|SPD86250.1|1196948_1197152_+|cold-shock-protein,-molecular-chaperone,-RNA-helicase-co-factor
MAQGTVKWFSAEKGYGFIEVDGGTQDVFVHHTAIDAQGFRTLTEGQKVEFEITSGPKGPQADQVRGL
>LT985188.1|SPD86261.1|1209809_1210433_-|Vitamin-K-epoxide-reductase
MPSSGTLAAVRRLRQSNGWIFTTMLISALISLTASFVLSVDAVVLAADPQAALSCNINAVLSCGTVATSWQASLFGFPNAFLGLVAEPVVITIAVASLGGVRFPRWFMLAAQVVYTLGVVFAYWLFFQAYFVIGALCPWCLLVTLSTTLVFASLTHVNVRDGILLLPERVSRTARALIAHDLDAVLVGVWLTVVTAMVVVKYVPLML
>LT985188.1|SPD86262.1|1210422_1211202_-|Disulfide-bond-formation-protein-DsbA
MSTTKQTKPNANQRTALREQRERQAAAQRRLSRIVRTTWIAGITAIAVLIGVMVWAVAGNRSATPAPSSGAVVAPANATDTGALRFGTGPVTVSVYADFMCPFCGRFERANGDYLQQAVAAGSITLDVYPLSFLDQQSGGSRYSTRAANALVTVANADPVTALKFNKLLYSNQPAEGGSGLTNAQLADFATQAGASADVAASISREIYTPWVEQATQQAFASGVKQTPTVQINGTEFTGDLYTAGALQAAVEKAASGAK
>LT985188.1|SPD86263.1|1211333_1211786_-|membrane-protein-of-unknown-function
MMRSAPWASRVLAALITLVAVLPLLARLPRVAVVACFDAGHPLYTLTETHASIAANCVTAPAPVVTWTLMVAATLLVHALLLPAALLAAGLLLRGARHLVDSGRRLLAVVLGRLRAIVVVSWPAAPVLVPVTVTRPAYGRTNPRRGPPLS
>LT985188.1|SPD86264.1|1211954_1212179_+|conserved-protein-of-unknown-function
MEIKVGIVQGGREIVLESEETAAAVESAFAKAVADDGLLSLTDERGRKVLVPASRIAYLEIGQEHVRRVGFGAV
>LT985188.1|SPD86265.1|1212485_1214081_+|Superfamily-II-DNA-and-RNA-helicase
MATSFAAGVGVPISGLAAGARKAIALSDIATEDLQVAESQTPEVQTTFADLGVIPETVEALASVGILHPFPIQSLAIPIAVNGTDMIGQARTGTGKTLAFGVSLLQRIVARSDEGYADHHPKGKPQALVMCPTRELALQVADDLEVASTVRKVRVLTVYGGVGYDLQTNTLTTGVDVVVGTPGRLLDLVTRRSLDLSAVKVLVLDEADEMLDMGFLPDVERLISKTPPTRQTLLFSATMPSAVVGLARMYLNQPVNVRAETQDASVTVPEVDQFVYQAHDLDKPEIIGRLLQAEGCTKTIVFTRTKRSAQRLTDELTDRGFSVGSLHGDLNQVLREKSLKRFHEGKVDVLVATDVAARGIDVTGVSHVVNYECTDDDKTYVHRIGRTGRAGAKGVAVTLVDWADMTRWKVINKTLDLGFPEPPETYSTSHHLFTDLGIEPGTKGRIAPPKPAEPREPRPQRERGPKADRVETTDGRVRRQRRRRSGDKPVQPETTEAVTSEPTVDGASDKPRRRRRRRSSGTKPTQSSAAE
>LT985188.1|SPD86266.1|1214483_1215287_-|conserved-protein-of-unknown-function
MTMRDFTFADDVPAAWTYHRSTARWLFNASAGGESPPVKPGRENGDLPFTALPAGELPTLPLAEALRARVSCRTFRPDALPLADLATVLRCGYGVEHRSGTVMQDRPPPSGGGLYPLEISLLVRAVEGLEPGLYHYVPAVDGLEHVQQIALPRAFTTYLFMGQPWVADAAVVAVISFVGARSLTKYGDRGYRYALLEAGHTMQNLNLAVAALGLGAVNLGGFYDDELAVLCGIDIEHEVPLYASAIGHPDAQRSDRMAMRALDRGTV
>LT985188.1|SPD86267.1|1215283_1217524_-|conserved-protein-of-unknown-function
MAAAGLEMFADGDAVILASPAGMLRLDGGVALAVRQRILPAVENVVDRDDLVRGLDDLPVGEVNRLVDRLVEAGMLVESDGSADWLGLLSTDAETRRALAARLEAVRLLVLGDLQGTGGLVALLRTAGIGAVDVVEPGGMARDELPDLIAGRDLVVCAVDAGWTALRTWVNRACLKAHVPAVYVALEGAFAYVGPLVLPGEGPCYLCWRMRALACADDFELAMAREEALDARRAPLRRPLLPGLAATVDGLVAREVLALTTSALQPELAGHVVVLDQVKGTRQAHPVVPRPDCPACRKKAPPPASGPTLAAEPQTTDFDAIEARVVSEVCGLIRYLDPVPKPVQEPGQPVIVRAQLANVLYGQGEDAFVTCSGKGLDLTTARNTAIGEALERYASLAWTPPRRITTTRAALPGPSLDPHELVLFAAEDAERLHFARYHDDLALDWVPARSLVSDREVWVPHQAATLHGSQWPRHDLLFAPTSSGFAAGPNVAFAAEQALLEVIERDAFLIAWAHRLATEPMDARTVPDPDCAAMAELYARRGVLIDVHLLPTDSTAFVAMAVGWSDADPAVVVGLGADQNPVRAARSAVLEVGQVRPALRSRLLDPAVLARRAELVGDTAQVHELDDHDLLYSHAATARRGLAHLRTGPSATWRSPAPRGHGLPDLVDSLARVAGDVLIVDVTPDDVADLGVRVVRGIVPGFQPIHFGADQARLGHQRLFTAPHRWGWRDRVATRTDLNPDPHPLA
>LT985188.1|SPD86268.1|1217560_1217872_-|protein-of-unknown-function
MPSQEEFDELKGRLEKLENHVAGAATPQFTDEELAAFKKVSSAMADTGDFCGINDCFRPRLCSTVCSVCRTCWTVCIFECTCGPCNLGGFNAGGVQRFNGLGG
>LT985188.1|SPD86269.1|1218071_1219154_+|S-(hydroxymethyl)mycothiol-dehydrogenase
MQQVKGVIARSKGAPVELVTINVPDPGPGEAVVKIQACGVCHTDLHYREGGIGDDYPYLLGHEAAGIVESVGPEVHDLAPGDYVILNWRAVCGACRACRRGRPWYCFATHNAKQKMTLEDGTELSPTLGIGAFIDKTLVAAGQCTKVDPAARPAAAGLLGCGVMAGLGAALNTGNVQRGDSVAVIGCGGVGAAAIAGARLAGAATIIAVDIDDRKLERARELGATHTVNSKDADAVEAIQALTGGHGADVVIDAVGRPETWKQAFYGRDLAGTVVLVGVPTPSMQLELPLLDVFGRGGSLKSSWYGDCLPSRDFPMLIDLYLQGRLPLDAFVTEEIGVHDVEAAFDKMHGGDVLRSVVVY
>LT985188.1|SPD86270.1|1219153_1219765_+|conserved-protein-of-unknown-function
MAARIDHAITSGTFSLDGETFDVDNNVWVIGNNYDCVVIDAPHDLAAIVRLIDGRRVKAIICTHAHDDHVRVAPALGRVTEAPVLLHPADLPLWNLTHDAPPDGELFDGETIAIAGETLRVLHTPGHAPGAVCVYAPGLGAVFTGDTLFNGGPGATGRSFSDHDTLVSSIRAKLFKLPDDTVVKTGHGDDTTIGAEKERLGTE

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Crispr_ID: LT985188_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_6

1373665-1373797

Orphan

Consensus_repeat	Method
TGACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACAGCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_6

>merge|LT985188|6|1373665-1373797|CRISPRCasFinder
TGACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACAGCCCGTGGCATGGATTTTCAGTTGTTCTGGGCCGCCCGGGAGGGGTAAACCCCTTGACCCCCAGTCAAGTGCGCTACCAAGCTGCGCCACAGCCCG

>LT985188|6|6|1373665-1373797|CRISPRCasFinder
TGACCCCCAGTCAGGTGCGCTACCAAGCTGCGCCACAGCCCG	TGGCATGGATTTTCAGTTGTTCTGGGCCGCCCGGGAGGGGTAAACCCCT
TGACCCCCAGTCAAGTGCGCTACCAAGCTGCGCCACAGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD86429.1\|1371737_1373288_+\|Multicopper-oxidase-MmcO	unknown	unknown	gnl\|CDD\|225043
LT985188.1\|SPD86423.1\|1366159_1366441_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86434.1\|1377252_1378332_-\|Arogenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
LT985188.1\|SPD86422.1\|1366122_1366287_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86436.1\|1378905_1381848_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|277335
LT985188.1\|SPD86440.1\|1392235_1393969_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86427.1\|1368202_1369195_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86435.1\|1378328_1378523_-\|Prokaryotic-ubiquitin-like-protein-Pup	unknown	unknown	gnl\|CDD\|368536
LT985188.1\|SPD86428.1\|1369224_1371741_+\|putative-copper-transporting-ATPase	unknown	unknown	gnl\|CDD\|319783
LT985188.1\|SPD86432.1\|1375209_1376547_-\|GTPase-Der	unknown	unknown	gnl\|CDD\|179525
LT985188.1\|SPD86420.1\|1363819_1363954_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86424.1\|1366573_1366816_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|309878
LT985188.1\|SPD86433.1\|1376539_1377244_-\|Cytidylate-kinase	unknown	unknown	gnl\|CDD\|234579
LT985188.1\|SPD86439.1\|1388151_1392234_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86431.1\|1373922_1375098_+\|membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|236669
LT985188.1\|SPD86425.1\|1366937_1367429_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86421.1\|1364812_1365682_+\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|223348
LT985188.1\|SPD86438.1\|1385341_1388155_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86426.1\|1367546_1368164_+\|conserved-exported-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|367619
LT985188.1\|SPD86437.1\|1381844_1385345_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD86429.1\|1371737_1373288_+\|Multicopper-oxidase-MmcO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.94371e-103
LT985188.1\|SPD86432.1\|1375209_1376547_-\|GTPase-Der	gnl\|CDD\|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
LT985188.1\|SPD86434.1\|1377252_1378332_-\|Arogenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	1.72786e-104
LT985188.1\|SPD86431.1\|1373922_1375098_+\|membrane-protein-of-unknown-function	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	4.81913e-06
LT985188.1\|SPD86424.1\|1366573_1366816_+\|conserved-protein-of-unknown-function	gnl\|CDD\|309878	pfam04945, YHS, YHS domain. This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterized membrane proteins. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.	0.000225479
LT985188.1\|SPD86433.1\|1376539_1377244_-\|Cytidylate-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	7.41683e-72
LT985188.1\|SPD86436.1\|1378905_1381848_+\|conserved-protein-of-unknown-function	gnl\|CDD\|277335	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	0.000113726
LT985188.1\|SPD86421.1\|1364812_1365682_+\|protein-of-unknown-function	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.78193e-32
LT985188.1\|SPD86426.1\|1367546_1368164_+\|conserved-exported-protein-of-unknown-function	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	5.98226e-51
LT985188.1\|SPD86435.1\|1378328_1378523_-\|Prokaryotic-ubiquitin-like-protein-Pup	gnl\|CDD\|368536	pfam05639, Pup, Pup-like protein. This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD). Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C-terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier.	1.3464e-13
LT985188.1\|SPD86428.1\|1369224_1371741_+\|putative-copper-transporting-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>LT985188.1|SPD86429.1|1371737_1373288_+|Multicopper-oxidase-MmcO
MSPASRLPIRHDAGLGMERLWSRRAFLGLGLGVGAAATLALAGCTSSAAWVNPDSAAVRDRERQRGGTGKTTAVTLTAASASLDLAGTTAQTFAYGAVPAPIIRLSAGDTLKATIRNQLPVETSVHWHGLALRNDMDGVPPLTQQPIAAGSSFDYEFIAPDPGTYWFHPHVGAQLDSGLYGALIVEDPNEPLAYDDEWVIVLDDWLDGVTATPDEVLAELSRGMGDMGGMDDMFMRMGNTLMGATSDLLGGDAGDVYYPHYLINGKPAADPAQFTGTPGSRVRIRLINAGGDTAFRFAVGGHRLTVTHTDGFPVEPVEVDSVLLGMGERYDLLVTLGDGAFPLVALAEGKRERAVAVVRTGVGNTPPQDAVLSELDTARVATAAILTAATDVALDTKTPDREVTLTLTGSMADYDWGINNKRFDPTQPLRDAHAVRAGERVRLRMVNETEMWHPFHLHGHTYQHSDGGPRKDTSIILPKQTLTVDFDADNPGQWAAHCHNIYHAETGMMTVIGYQT
>LT985188.1|SPD86428.1|1369224_1371741_+|putative-copper-transporting-ATPase
MNKKMSTVVLQVAGLHWASSSQLAEKTLGRRPGVVAVEVNPVAQTANVTYDPDATTVQQLRAWVTECGFHCAGQSVPQHICHPSDEPHASHSTGPHSHHDSAPQHHHGATGDTEHDHSAHAGHDMAPASPGPAHAHGDSAPATAQEVMGHGGHHGGMSMDAMIRDMRNRFLVALILSIPITLWSPIGREVIGFTVPAPFGLRDDVFSLILSLPVIFYAAWIFFDGAYRALRAKTLDMMVLVAVGVGAGWLYSLAITLTGGGEVFYEAASVLATFVLLGHWVEMRARGGANDAIRRLLELAPARAVVIRDGNEVEIPTAEVVPGDLLLVRPGAKVPTDGEVIDGTSEVDESMVTGESMPVEKTPGSAVIGATVNTVGTLRVRATKVGADTALAQIVKLVQEAQNSKAPGQRLADRAAFWLVLVALIGGSLTFLVWFLAGADVPMAILFAITVVVITCPDALGLATPTAIMVGTGLGAKRGVLFKNATGIETAARIDTVVFDKTGTLTKGEPEVTDYLAVGTDDLDLLSFVVAAERESEHPLAKAIVAYADARDIPRRTATAFRNITGQGAIATVDGHRVVLGNTRLMVQERIDTSQIDAAREALAASGRTAIMFAVDGTIGGVIALADAPRETAKAAIDALHETGVEAVMLTGDNQPTAQRIASLLGIDTVIADVLPEDKSAKITELQAAGKKVAMVGDGVNDAPALAQADLGIAIGAGTDVAIETADVVLMRSDPLDVPVALRIGKGTLRKMRQNLGWAIGYNAIALPIAAGVFYPAFGIMLSPEIAAISMSGSSVIVAVNALLLKRLRLPDQAPAPGSATASEPAGPVEPSPNGALR
>LT985188.1|SPD86427.1|1368202_1369195_+|conserved-protein-of-unknown-function
MVRAPTVLPLLLTPVSPFSRPVPSADLPAASVVVLLSRKARLMFSRLRSSPRRALAALAAAVAAVTVLAGCGASSAPSSSAQTPVEFGHIHAVVPEADATILVGTHTGLYRVDAEGSVEGPLGGYDFDLMGLTVTDGMLIASGHPGLDTPSELGSPNLGIIRSEDGGRSWEPVAFTGEEDFHILTAGPDGQVYGIGSSSPAVQISGDSGSTWTAGSEVTAADLAVTADGVIYAATQSGLFASQDDAATFGLVADAPTLYLLDAAGDELVGIDTDGQLWRRSGQAAWTPIGTAQGTVAALGLAPSGVVYVVDDRGIVALDGDQATTILPAL
>LT985188.1|SPD86426.1|1367546_1368164_+|conserved-exported-protein-of-unknown-function
MRMRMLALASTALITTLVLAGCGQNNDPGMSGMDHGSSSSSPSSSEASADFNAADEMFVTMMIPHHQQAIEMADLILGKDGIDERVVTLAQQIKDAQGPEIETMQGWLQEWGLPSPDPSAGGMEGMDHGDGMMSEEDMAALESATGVEATRLFLQGMIEHHNGAIMMAETELSNGQNPDALELAQQVIDGQSAEVTTMQEILDSL
>LT985188.1|SPD86425.1|1366937_1367429_+|conserved-protein-of-unknown-function
MGALRSVMTGGSPRRRGLLLFGLLMMVIAGLFAMHVLSMSGPQGHTSPTLTIETDHAAAETLPDGGMSADVADEMAGASMSDAAAAGETHCGDGCGEPAPSHSMLMMGCVIALLIGMVLLIAPGLWGRGWLTRLLAVRALPLLGAVLPRPRPPSLIVLSISRT
>LT985188.1|SPD86424.1|1366573_1366816_+|conserved-protein-of-unknown-function
MSSHDHHHGGHEAPSHAHHHPAPDAENLVHCPVMPNNFVDPEQAEQQGLYRDYEGKRYWFCCAECGPLWDADPARYAHAA
>LT985188.1|SPD86423.1|1366159_1366441_+|protein-of-unknown-function
MVPSLSSSSWSPPAAASLRVSSSPLVVPMLSVTFAVTASVGGILLALGSAIPISPYITTISFLIYLACRLIGASRAGGRAGTAPHAVLPVKAS
>LT985188.1|SPD86422.1|1366122_1366287_-|protein-of-unknown-function
MPPTLAVTAKVTLSIGTTKGEEETRSEAAAGGDQEEEDKEGTNDLDGDRDGHAE
>LT985188.1|SPD86421.1|1364812_1365682_+|protein-of-unknown-function
MHNRHDNGQPLSVGSLFSGYGGLDLAVEHTLNAETIWFSENNPHVARIFAHHWPGIPNLGDITTIDWRNVDPVDVLCGGFPCQDVSTVGKRAGLAPGTRSGLWSHMAAAIEVLQPRLVVIENVRGLLSSPAVHAPVERDNHAQRHQDDTSREDATLRNLEPDPWVWETSQLDLSGQPAPYSAIWPTSGWMRNGSAYRHRLSVLLTCGSASSSSPATKAMFRTPLATDSTRGGESLEQVRARRGTIALSHQVIDLALNGPAGSQTKSNESDTLWSLIEDIFAAGDDTPKQ
>LT985188.1|SPD86420.1|1363819_1363954_+|protein-of-unknown-function
MQLRVAGTAVVVIERRRHDAGDIDVCNRAVRAGCTDPGCRNLAF
>LT985188.1|SPD86431.1|1373922_1375098_+|membrane-protein-of-unknown-function
MINPTPMLPPSPIEISGFFTSAFEAMKRRLGLFVLIVLFPSLLMLAVFLICLLLVGGMAATGNQSAIGTGVVLAIVVFIAGVVTVWLAQLKSQAMMTQAAYEVAQNQQPTFSGVLRNTKGFLPRFLPLIAIGFGVGIAYTLLLGTVMFSMISAASSSSRSNAAGAAALIFILLIVATVPVAFWLSVKLLYVVPACTIEGLGGIDSLKRSWSLTKGSFWRTFGYSILPGLAVYVLTFIVNSVTQAITGPVASQFDLDNLSPAQIAAALLVALPAFGITLALQLAVQLLTTPFLQSYYAYMFIDQVHRSEMPAQPYGYAPQPGYGYPGGYPQQGYPQAPQQPQYPGQQQYPGQQQYPGEQYGQQPPQQQWPPNPQPGHNGQPGSSQNQWPGQN
>LT985188.1|SPD86432.1|1375209_1376547_-|GTPase-Der
MSEPQAEPIKPVVAVVGRPNVGKSMLVNRIIGRREAVVQDVPGVTRDRVSYDAIWNGREFVIVDTGGWAPDAKGLAAQIAEQAELAIAAADTVLFVVDASVGIQDVDEAVVQVLRRSKKPVVLAANKVDDARNEAEAAMMWNLGLGEPHPVSALHGRGSGDLLDALMEALPEAPLEADVELGGPRRVAIVGRPNVGKSSLLNKLAKQQRSVVDNVAGTTVDPVDELVEVAGTVYRFIDTAGIRRRVKEASGHEYYASLRTASAIERAEVCVVVIDAADPIADQDLRVLTMVEEAGKALVIAYNKWDLTDEERRRYLNREIEQDIRAFDWAPQVNISALTGRGVDKLSKAIEAALEGWETRISTGKLNAFLGRITAAHPHPVRGGKQSRILFGTQAHTSPPTFALFTSGQLDPGYVRFIKRRLREEFGFVGTPVHIEVRAREKRSK
>LT985188.1|SPD86433.1|1376539_1377244_-|Cytidylate-kinase
MTQSHSENPLVIAIDGASGSGKSSTARGVAKRLGLAYLDTGAMYRAVTVAYLDSGVDGSDPAAVTAAVEAAQIEIATDPDDQWVRVNGRDVTDEIRSQRTSTHVSTVAVIPECRANLVARQRAIIESAPNGIVAEGRDITTVVAPDADVRLLLSADPEVRMARRKLDHGGQIDDAALRDQILRRDADDSTLVDFTTAADGVVHLDGSFMTLEQTIDAVVGLAERALARKEAADE
>LT985188.1|SPD86434.1|1377252_1378332_-|Arogenate-dehydrogenase
MNEPSLTPAVVIGAGLVGASVGAALTTAGVEVHLIDSVSSHARVAASRGGGSTEPIDPATVRLVVVAVPPAKLAEVVADALATYGKATVTDVGSVKGTVLADLRARGVNLARYVGSHPMAGSQRVGPLTARADLFADRTWVITPHDTSRAKAVLTVHALARACGARIVSMGATHHDEAVAQVSHLPQLMSSLTAARLNDVPDEHLNLAGQGLRDVTRIAASDPRLWTQIISANSEAVRAELEAVRDSLDELLAGWGDPEALRRFLADGRQGTRAIPGKHGAGGVAYAEVVVTIPDAPGALARLFADIEAAGVNVEDVRIEHDPAREVGYLAVQVTKPVAKSLQAAMTEAGWTLRPAESL
>LT985188.1|SPD86435.1|1378328_1378523_-|Prokaryotic-ubiquitin-like-protein-Pup
MAERIQRQRSTTRADQAQAETTPAGFDAAAKPALDYDALLDEIDSVLETDAEEYVRSFVQKGGQ
>LT985188.1|SPD86436.1|1378905_1381848_+|conserved-protein-of-unknown-function
MELPLLLAGPILRRVDPSIVSVWMALSSDATVRLDVYEGRVAFDTTNPVFVSSDDAPDPNAPKPYPGADTIRIGERLHLSLVSARIPPASGKVFEADRLYSYNITIFASGGRQETLQSLQLLQTRQVSGTTAGPLGYADRMLPSFALPPSNLDDLQIAYGSCRRPGYDDGDAFPWLDQYLAERFGDPRARLHQLFLGGDQIYADDVEDVLMRRVVELGVELIGTTAASGQLAGEPDQTPIERVTVDKVRLLKRTVDPQNPDAAYDDEPAAATTANPLPAGPPWFGVGNRLYLTNCSAQLTSEDGKNHLISLGEFAAAYVLYWAPECWGTDIPGAQLQTGATASGPVHWLDVLTDNQSVALPDVGTPARVPQYTFTDATVRKDELAKEAARRAKLSQAERDEEDQDRAKDKAKQDAKRPKVSRRHQRVHRQFLADLWRAQRLLANVPTYMIFDDHDVTDDWFLTPMWRHRVLSTGLGQTILTNAMTAYALFQDWGNDPRRYDVTATDRPDLAGGLPSDVLVAAQKLFPGGADQGPAKAPFTALGKLFGHDLDNQALPNGEFLSVKPPIAWHFVLDGPKHRVVALDNRTRRSYVSEIGPPGNVSKEALDAQIPKPPLPAGVEVLVVIAPLQVIGPPVIDEVVSRAIYRIFDAVHRDEVAGEKISGARLMPGTNPDALETWALDENTFEYLLSRLADYGRVVVLSGDVHNAASNLMSYWRGTSTTPARIAQFTSSGFKNVMPVYLQALDAKAMLLQQMLRAKLGVERLGWTKPDADLVLLPAGRTEAELVTVTRAKLLRSPVLLPTWGWIDDNSDGEDDEAKRSRLNPARPPDWRWRVTPLLDERPDVVPTPPPKDPNAVRPTPIRVFPLDEAGIEDLAGDPSTTFAALRQVAVRHQHALERMRNTRQMMFRSNFGICRFESKDDQVTAVGEVYTQAIDPDTQLPVMAPYMVHKAPLGPLTEDPPERLRRFVIERVPVPEPTP
>LT985188.1|SPD86437.1|1381844_1385345_+|conserved-protein-of-unknown-function
MSASSVLRSLAGEVIDFLVFVGELLGGASADQAREAILRDLGAKPGSGGLVLPAASMDSVKAYRDSIDTDLQADIAAAADIAIVINAIIEQIETWGGSDWSGRTDTLITSLFDVLGRTYVRQRWPKLFLVIEALAVAGELTGSLGPGEQALPHRSGGDTHPGRFFDSLLTILKFVWNPGRTLDDLDDTREWATGSTLNTARDESFLVIDGLIRGIVAAIAVIDQTKDEFDENILSDVIVGWDGKGLDIDSDERPSAADLLASRMVSLSLLHEADSATEELKVTWLYLPRRLGNPARPHQVFLALGGALSIDQVLNPQRSSHSPEWRFRVGLKSDAGAALLISGDGVEASPEASGLQASFGYVATPDSSGISYALPRATGMRVELGGLSFLLTLSATGARVLAVFDSCALVVDGSSADSFMRKLLGGRPYRTMFGFSLGYDSNLGFIHELHRVSGKDATGATVPFDSAGPAGPSDLDLTLPLGGGGALGINPLEVVLRVAWRSADAPATGWAVAAGGLITFSVTWGPLYLRVDQLGLLAELDTMKLQKDRNLGLVDAHVDASLPTGIALNIDAGAISGGGAIHHDPASGDYYGAVVLRIAKRVTLTCLGLVSTRDGQGNQLTSFILIGTVEHLGLTAGFITLDGLGVLYAADRTLDVPAVRAALPSGKLKYLLFPADPVKTLPEMVAGLRTFFPPKEGTHIYGLLVKLTFGNADHPLLRADLALMLERDGNTDTSRLLVLGRVSSVLPQEQAAVLTLNLDVVGEFDFDTGFAALDAVLYESKLFGRFTLTGAAAFRRARGLGFALAIGGFNPRFTPPAGFPVVPRVTVALTSGDNPKLIIEAYLAITPNTLQFGCTASLYAAAFGFSIQGYIGFDVLIAFWPPHFIADFKAGVQLKRGSRSLFKVDVSGTLEGPLPLRVAGKATFGILWWDYTVSFDKTIIGGSNSVVSELLDVLTELLTRLDDPASWRTELPSTAGQLVGVRTNPATDGLSLHPLGRVVVQQGLVPLGLDRDIDRVGAFVPSNERRFRITAARVGGRTFTDFDTVHDEFPDSQFFELTEAERLSAPGMVVRQAGVGFGDDGYDTDPSLGVPAPFHYTEIVVGDDGVPVLQPEPQPAPREHVLAGLRISASARALTRTAPSDRFSGVRRTDAPRLATLGLARTAGVS
>LT985188.1|SPD86438.1|1385341_1388155_+|conserved-protein-of-unknown-function
MTEPALLFLPWVRRGGALSLPPDLPSGHPPSHVSTTVGVSVNDRPGADVPVQLLGPGDVTGVAPQQVIRSDPAPNARTFESNYLALVEFDDPGLPWLFTPASASDGKLRPWLCLVVVREQPGVRLLPAGKGALPVLHVGTPARPEVELPNLADSWAWAHAQVALDGAAGSAAVAAALAGDPARNLSRLMCGRLLAEQTPYLACVVPTFEAGRRAGLGDDPGDAQGPAWTIADGMGTVELPVYHHWRFATGPSGDFQSLALAIRGRPVEDGFGLRPIDLSTAGLGLSGTDDAQELLGGALLALDAPTQRWSDPALPDRFSAALEPVLNAPDSAPAAEPLLAPPRYGSAYRTPATLASGSWYEQLNLDPAARVAAALGTLVIQRQQETLAAAAWEQSADLSAATRVVGLAGLGFALADSLHRRHVAPLSPEVGLFVLAPLRAAMMTAPPASGGQSFAVQWNRARLPGAALGSAVRRVTRVRGPAVRTAERDGTMPPLLDWIGSMVPSARLARSFAAPSGPLTFDGVGPTVPSARVLSWAALTADAVTNSMPHPGFALSATPAPAGPRPFPLPGGIVTGGVFTEAVGGPAARPALRRPDDGGGPSPIRRRPGDGGEPPDPPDPPDLPDRPHHPPPRDSAAAALFRTVAAKQLGRFAPVTADSGTATGTVVLGTLMAEAVALTAPMRTFTAAIGALFTTAPAPATDDTPMPDLRFTPRFDSPMAHSLAELGEQWLLPGLAGVPANTALGLRTNGAFVEAFMVGLNHEFGRELLWREFPTRLTATFFDRFWDAAVAPTEPPDIPQLDQWADRALGAPTIRPERFVLLLRSELMRRFPDAVVTATKRGAAPGQALLPTFRGSLDPDVTFFGFAIPLADADQYAISIAEQPGAPRFGFEVGEAPSDVSHAPATDASAAKLAGRLRQLPSRITIPVQVLMRKPES
>LT985188.1|SPD86439.1|1388151_1392234_+|conserved-protein-of-unknown-function
MTAAVNLGPLTADALLADARLSGELGPGSHPLALLPVRLETRYAGGELLVRIYPDQVHVDAHDERLSAAEQQAGQDFWRAQWRTGANQARQQRIWAPLAGRYGAGRAGWVVRATRPSNGTQRPTGEVGDDAPLAVEPSFAPIDTTDERRTPVARLLPARWTVTAYAGGQVLAVATGAPITIDPAVGPDLAAPLVGDADDHEVAAVDTGMNWLVDFAGAEQLGMAVRLPVTGPVDLLVATGVRGVDPAAGAVQLAALLQAQRYSAGLGFLPPEAPTNNSDAAGSAWSSGEVGAWSAADTEPATGSVGAATAVALGVALPGSLPHAGDTDDLTAPMTRALWPATWGYWLAQFAGVDGASTDWGRDFAVRFLRPGGPLPTLRVGRQPYGLLPVTSVGRFAGDPRSTRLSRVIAGLRDGAWRPAVDLAPRVGRADVATDLVDVLRLEGRSDDLRLRRSMGARFADNLQRLLGAATTEGGFWNAARDRSLPLANAAGLGLVPGALTVHEPSTHPVTLPLVAPSTDLGFIAALLAADPDALAGATDAPVSVLAALLRHGLLREHADAAARLLSLGAADAEFYGFGDDATGWTARRATVLPDGHTVAQRLADGPVGSLTDFRTAVNTLAAASVPALERQLLQSIDATSHRLDAWATALATARLDEVRTANPDGVLIGGYGWVEGLAPTTSAAATPLPTGEPGPLLAAQSDPGFVHAPSVHQAQVAALARNAHLAHGGGEHDPFAVSLTSERVRLARWLFDGVRAGRSLGAVLGYLVERDLHERRLDFAVLPAREVCPLPGQEAFSLEARRLDGLRLHQLWAGSEDHAVDHLVSMSRTPTDDERRRAVGVLRRLAAAVDAAADALQAEQVHQFARGDLSRAVSSVADLDRGLAPPPELDFLATPRTGAAVTHRVVVLFDPDAAPAAGWATAATSPSAAAEPALDAWLSHQLGPAIGRVLRLAGEPPVDVPWGSLGMAAGDFVRLAGGGSALRELAVRAAVAAGRPVDVAELTPDDDLLALLELGGSLAALVASAKGLDGAALQPPHADPVPGVDLPELAARAAAARRALGAVVDRLNAALATPDDSDALQAAVVASWPFAVGEAGLPTVKSGWVAAAARVLADLTARLAEPVAASDDAAALGRELAALQGPGFVAVPRFTAGTMPDLIASRDDPALVGGDPLAAEVWVTRMERVREPLARLGIAAREAEALGGPAFEPVVAQVPYHPGDTWNALPAPHYVDAATSLLLIGGPVLRAGATLAGLLADEWAEVVPSASETTGVAFRYDPPESMAPQAILLAVPPVLDEPWTVGRLNQVLVETLELAHLRAVPPEALGPARQYLPAAVLAFNAEGDAPSTDPNGLTPAAGG
>LT985188.1|SPD86440.1|1392235_1393969_+|conserved-protein-of-unknown-function
MASITTFFRLEPDPLRPDVTVGATAPLHDPLWLLARQWQTGEFAAQDGGTPVVARWRGVVAPPTRFVAGRIPPDTQLQAPRFDASAAPLETLIEAVGTTLPAGADGLAGLRLGVDTGRLFLRLFAAQSTSRDYGPALVTAFAVPRYADDVLAQADQATAGYARLHGGRSLDGRRLRAELAGRPLPRFGEQVAAGDVAEVRAACADWLALVAELFDDVDAAAESWQPDRFEYTASISARLGPSGFDETTLTAQRYDSDVLDWYEFDVNGEVNLGTTPAEAGETLVRTVMPAPVTAPGLPARRFWEFEDAAVNLAALAPAETDLAQVLLIETLSGYGNDWFVIGVDLPVGRLVRSTSLVVTDTFGARTLLNPIGTTSALAPGWSMFQHAMPFDDAAPEGATIRNLLYLAPRLARPVVGGVVEEVLLARDEVANLSWAIEQIVESPLQGPVRLSSARPPDPPGDPDVAPDYHLAQAPPPHWIPLLPVRTGSDEQVSLARGSVLDLDGRRVVTSVTELLGGGPDGALLIPEEEVPVGGLLVQRSYQAARWTDGTLHVWAAHRTKVPGSVPPSGVRYDYLIE

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Crispr_ID: LT985188_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_7

1448064-1448174

Orphan

Consensus_repeat	Method
GAGATCCCGGCGTCCGCCGGGATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_7

>merge|LT985188|7|1448064-1448174|CRISPRCasFinder
GAGATCCCGGCGTCCGCCGGGATGACGGCTGCAGGGTGAGCGGGAACGAGAACCGTCCCCGATTCCGGCTCACCCTGCGACTCGGAGATCCCGGCGTCCGCCGGGATGACG

>LT985188|7|7|1448064-1448174|CRISPRCasFinder
GAGATCCCGGCGTCCGCCGGGATGACG	GCTGCAGGGTGAGCGGGAACGAGAACCGTCCCCGATTCCGGCTCACCCTGCGACTCG
GAGATCCCGGCGTCCGCCGGGATGACG

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD86497.1\|1453046_1453349_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86490.1\|1445599_1446439_-\|Shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
LT985188.1\|SPD86487.1\|1442813_1443893_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
LT985188.1\|SPD86498.1\|1453449_1454766_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
LT985188.1\|SPD86489.1\|1444401_1445586_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
LT985188.1\|SPD86485.1\|1441803_1441971_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86500.1\|1455935_1456328_-\|Glyoxalase	unknown	unknown	gnl\|CDD\|380093
LT985188.1\|SPD86491.1\|1446435_1447578_-\|Endolytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|376862
LT985188.1\|SPD86493.1\|1448373_1451025_-\|Alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
LT985188.1\|SPD86486.1\|1442121_1442814_-\|Transcriptional-regulator	unknown	unknown	gnl\|CDD\|377290
LT985188.1\|SPD86501.1\|1456629_1458057_-\|DNA-dependent-ATPase	unknown	unknown	gnl\|CDD\|237355
LT985188.1\|SPD86484.1\|1440931_1441504_-\|Elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
LT985188.1\|SPD86502.1\|1458162_1458831_+\|putative-PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559
LT985188.1\|SPD86492.1\|1447594_1447987_-\|putative-pre-16S-rRNA-nuclease	unknown	unknown	gnl\|CDD\|335420
LT985188.1\|SPD86483.1\|1440655_1441807_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86496.1\|1451797_1453159_-\|Deoxyribodipyrimidine-photolyase	unknown	unknown	gnl\|CDD\|223492
LT985188.1\|SPD86495.1\|1451332_1451713_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377605
LT985188.1\|SPD86499.1\|1454850_1455939_-\|Winged-helix-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377630
LT985188.1\|SPD86494.1\|1451072_1451333_-\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86488.1\|1443889_1444405_-\|Shikimate-kinase	unknown	unknown	gnl\|CDD\|234654

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD86490.1\|1445599_1446439_-\|Shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.15134e-77
LT985188.1\|SPD86487.1\|1442813_1443893_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	4.79371e-159
LT985188.1\|SPD86498.1\|1453449_1454766_+\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	4.60579e-169
LT985188.1\|SPD86489.1\|1444401_1445586_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	7.04689e-179
LT985188.1\|SPD86486.1\|1442121_1442814_-\|Transcriptional-regulator	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	4.57884e-55
LT985188.1\|SPD86500.1\|1455935_1456328_-\|Glyoxalase	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	1.13669e-30
LT985188.1\|SPD86491.1\|1446435_1447578_-\|Endolytic-murein-transglycosylase	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	1.08276e-95
LT985188.1\|SPD86493.1\|1448373_1451025_-\|Alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
LT985188.1\|SPD86501.1\|1456629_1458057_-\|DNA-dependent-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
LT985188.1\|SPD86484.1\|1440931_1441504_-\|Elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	2.15355e-111
LT985188.1\|SPD86502.1\|1458162_1458831_+\|putative-PadR-family-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.80041e-18
LT985188.1\|SPD86492.1\|1447594_1447987_-\|putative-pre-16S-rRNA-nuclease	gnl\|CDD\|335420	pfam03652, RuvX, Holliday junction resolvase. This family of nucleases resolves the Holliday junction intermediates in genetic recombination.	1.14624e-28
LT985188.1\|SPD86488.1\|1443889_1444405_-\|Shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	8.86983e-59
LT985188.1\|SPD86495.1\|1451332_1451713_-\|conserved-protein-of-unknown-function	gnl\|CDD\|377605	pfam06103, DUF948, Bacterial protein of unknown function (DUF948). This family consists of bacterial sequences several of which are thought to be general stress proteins.	5.85484e-12
LT985188.1\|SPD86499.1\|1454850_1455939_-\|Winged-helix-DNA-binding-domain-containing-protein	gnl\|CDD\|377630	pfam06224, HTH_42, Winged helix DNA-binding domain. This family contains two copies of a winged helix domain.	7.77597e-25
LT985188.1\|SPD86496.1\|1451797_1453159_-\|Deoxyribodipyrimidine-photolyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	1.15928e-147

>LT985188.1|SPD86492.1|1447594_1447987_-|putative-pre-16S-rRNA-nuclease
MAACDPDGTLAYPVETVQTHQAARRLPQLLTEYEPFEVIVGLPRTLAGDEGPAAAYVRAQVAPLIAATPAVGWRFSDERLTTVDAGRRLRSAGRDAKRQRAVIDQAAAVAILEQALATERATGAAPGEPA
>LT985188.1|SPD86491.1|1446435_1447578_-|Endolytic-murein-transglycosylase
MAKLFRELRDPETGRWLPKEVWYRVRGAVAVLLSLAVLLGGGWFVYGKVHDAYIAFRTVDDYIDPEGLADVVVEIPQGATTNSIAEILVAADVVKTAKAFKSAAASEPDVIKIQYGLYKLRTQIPAKTAIEMLLDPSNQIKNQFQISEGLRLSQVLTSLASSTKVSEKDFKAALKNRKQFNLPSWIGPSNEGFIFPDTYNLPLKPNAVNVLKLPINQFTTTLDDLAFEDRAKALGYKPYDVLIVASIIEREVFRSEDRAKVARVFYNRLKKGMPLQSDATVAYAVKKTGTIWTTAAERKNKSPYNTYLHKGLPPGPITAPAKAALEAAVNPEEGDWLYFVPVNLDTGETKFTNNYDDHLKALAELKAWCLQSAENKKKCS
>LT985188.1|SPD86490.1|1445599_1446439_-|Shikimate-dehydrogenase
MTQGPKPRAAVLGSPIEHSLSPVIHLAAYAHLGLDWGYERVELQPAGFVGFVDALDDTWRGLSVTMPLKEQAAVCGVPDADVSLTGAANTVVPGLVRHVYNTDIVGLMDALRVEGLHESNVATIIGNGATARSAAVALARSGVRVIEVQGRNPDRLAEFRDWAEHACDVEVQPRSLGAPLDPASDVLISTTPSAALQGRLDTLAIELCPALRGVFDVIYHPWPTPLAQRASEAGLTMLSGLDLLVHQARHQVRLFTGMDVPVEVLMSAVRAELERRGAA
>LT985188.1|SPD86489.1|1444401_1445586_-|chorismate-synthase
MLRYLTAGESHGRALVATIEGIPAHVRLSTGDLAEALARRRLGAGRGARMKFEADEVTMLTGVRHGETLGSPIAIMIGNTEWPKWQTVMAPDEVDADALAAQARNAPLTRPRPGHADLAGMQKYDWNEARPILERASARETAARVALGRVASNFLQQACDITIVSHVVELGPIRAGGAVPTFADRDAVDADPVRCFDAAASEAMQAEVADCQKAGDTLGGVVEVVAHGVPAGLGSHSQGDRRLDAKLAGALMGIQAIKGVEVGDGFDLARTRGSLAHDEMQPSADGVVRLSNRSGGTEGGMSTGETLRVRAAMKPIATVPRALRTIDVATGEAAAAHHQRSDVCAVPAAGVVAEAMVALVLAEAVLDKFGGDSLAETRRNHAAYLDRLAQRGLR
>LT985188.1|SPD86488.1|1443889_1444405_-|Shikimate-kinase
MTAASTIALIGAPGAGKTTVGRQLAARLDLPFVDVDARIEAEQGRLIREIFADGGEAHFRELERDTSLDALSRPGVVSLGGGAVMTPAIAEALREVTVVWLSVSVTQASRRVGLNQARPLLLGNMRATLIKLLAERTPVYQNLATITVDTDRTGVRAIVDQIISELKEVDE
>LT985188.1|SPD86487.1|1442813_1443893_-|3-dehydroquinate-synthase
MKISTIDVTAERPYQVVVGTGALDYLPQYLADVKRIAVIHPPVLREAAARIGEGCDAEVLLLEVPTAERAKTGEILQRCWDTLADAGFTRSDAVVGLGGGSTTDLAGFVAATWLRGVRYVSVPTTMLGMVDAAVGGKTGINLQAGKNLVGAFYEPYTVLCDLAFLVDLPREELSSGMAEVVKAGFIADPAILTIIEDDPEQALDPSGEVICTLVKRAIAVKAAVVGADLRERTSVGRDLGREILNYGHTLGHAIERHENFTWRHGEAVSVGMTFVAELSRRLGRLDVDTADRHPRLLRAVGLPTTYPAEAWPALREAMNLDKKTRASALRFVILDGLAKASMLESPDEAELEAAFKALS
>LT985188.1|SPD86486.1|1442121_1442814_-|Transcriptional-regulator
MYTPRHFQMPAELQQRLLAAPGVGDLITHGPDGLLATHLPYVFDEAMGEHGSLVLHVARPNVQWRHEGEALFIITAASDYISSLWYPSAEESGKYVPTWDYVTLHLYGRLITHDDLAWTTMAVERLMGVHESRVGLDDMPQDYLGGQLRAIVGLQLEVTRIEAKAKLSQNRTPDDVRGVIEGLDSVGADDLSALVHEYALPAAEARANLIADVATRHRPARVIGTAKPQN
>LT985188.1|SPD86485.1|1441803_1441971_+|protein-of-unknown-function
MIPGRDGVCSNPRNQWQPDEGEPRDPASAGMTALPSRAGIRRDDGAPVTRRHPPG
>LT985188.1|SPD86484.1|1440931_1441504_-|Elongation-factor-P
MKGFDVASTNDLKNGMVLDLDGQLWQVLWFQHHKPGKGNTVVRTKLKHVLSGKVVDRTFNSDTKVDTATVDRREMQYLYHDGAGYVFMDTATYDQLTIPDDTVGDAKGYLLENGTATVAMHEGNPLYIDLPASVELEVTYTEPGLQGDRSTGGTKPATLETGVQIQVPLFITTGERVKVDTRDGSYLGRV
>LT985188.1|SPD86483.1|1440655_1441807_+|protein-of-unknown-function
MALSHAQHQIGGERTHRRVGLGGVQGERLARVGSPQVGLEQNVEGPLACLGTHRAPGRRGGRNGFDQFGHRAVGCGDPLARHVGGRRFGGQGSDPAQVAAVAGVDLDPLARGDEQRHLDLHAGLEGGGLGAAGGAVALQARLGVGDFELDRGGQVDVERVALVHRDGGGAVLEQVALGVADGVVGNGELVVGGGVHEHVAGAVVVQVLHLAAVDGGGVDLGVGVERAVDDLAAQHVLELGTHHGVALARLVVLEPQHLPQLTVEVEHHAVLEIIGRGHVKTLHSPRASRLTILAVPPLMDEPRARSQWKEIPASAGKTDPRRHDVSTGSRDSLVEPVETSVNEHIGSRGGRDDWDATTNHLGGAPPSGRGRASGTHRLSVRSR
>LT985188.1|SPD86493.1|1448373_1451025_-|Alanine--tRNA-ligase
MKTADVRRRYLDFFTRNGHTEVPSAPLVYNDPTLLFVNAGMVPFKPYFTGAEDPPFKRAVSVQKCVRTLDIEEVGKTTRHGTFFQMNGNFAFGDYFKAGAIEYAWELVTGSQADGNYGFDPDKVWVTVYLDDDEAAALWRGVGVPDERIQRRGLKDNYWHMGIPGPGGPCSEIYIDRGPAFGPDGGPIVDEDRFLEIWNLVFQTEELSAVRAKDDFDVLGPLPSKNIDTGMGLERTALLLQDVSNMYEIDEIFPVITAAAEMAGTRYGRDQQDDIRLRVVGDHVRSALMLMTDGVTPGNEARGYVLRRLLRRSIRSMRLLGVHDPVLPTLLPISKGLMEVSYPEVAAQWQRVSQSAYGEEDAFRRTLASGTQIFDVAVAAAQRENSSVLAGDKAFQLHDTYGFPIDLTLEMASEAGLEVDQQQFRTLMQEQKDRAKADARAKKGGAVNVEAYRTLRSSGETPFLGFTELTVESPVRGIVADGRLVDVARPGDVVEVVLDETPFYAEAGGQDADQGVITANGLELDVLDVQRPIQGLVVHKVLVNEGELTPGQSVIAQVDAPGRFAASQAHTSTHIVNAALRQMLGQGTHQAGSYNKPGYLRFDFNASQALSPAMRSELEGIVNAAIRDDFAVTDRELPLDEAKALGAQAMFGEKYGNVVRMVELAGPWSRELCGGTHVRSTAQIGLVNLLGEQSVGSGIRRVEALVSADAFAKFAAERALVAGLADTLKTQPEQLPDRVEKLLAQLKAAEKQIEQYRSKELLAGAGGLAAKVTDAGGVRLVAEQVSGVSGGDLRTLALEVRSALGGEPAVVALVGGGDKPVLAVATNEAARAKGAKAGQLVGVGAVELGGRGGGKDDFAQGGGSNAAGAAAALNAIRTAVAAL
>LT985188.1|SPD86494.1|1451072_1451333_-|conserved-protein-of-unknown-function
MGRRLFWFAVGVGVTAVLVIKGRELYERFTPKGVTEQVEKTAKSAQNWVTDFIDTMTNAMDEREAELREALSLDAENLGVQESSRT
>LT985188.1|SPD86495.1|1451332_1451713_-|conserved-protein-of-unknown-function
MSVGEIAGLIAAIAAVALVAFCAVPLLKLGRVLEELRLAVRDIGHSSVPILHELKGTVTATNDELGKLSVVTEDVSKVSRNAVVVSENASQLSTLFTATLGGPLVKTAAFTHGVRQAIKGTRKAKS
>LT985188.1|SPD86496.1|1451797_1453159_-|Deoxyribodipyrimidine-photolyase
MTSILWLRRDLRRADHPALAAAHADGEVLPVFLLDPAIYDSAGPVRQAWLARTLRALDDSYDGRLCLRHGKPEHIIAALAKEVGATSVHVSTETEPDGAARDARVRAALANDGVGWVETGSPYAVTPGRVRNAQGDPYRVFTPFSRAWREHGWRGPSLEPKGLTFAHAESDDTAWATLDDAATADGLPDLPEPGEQAAMQRWHDFLDDGLAHYAADRDRPDRDGTSRLSPYLKFGVVHPRTLLADLVGRSAKGADRYGTELAWREFYADVLHHNPDSLWHDLRGDLGAMAYDDDPDLIEAWRQGRTGYPFVDAGLRQLLAMGWMHNRVRMVTASFLAKDLHVWWPAGAKHFLNHLIDGDLASNNHGWQWVAGTGTDAAPYFRVFNPVTQGQKFDPDGSYVRRWVPELRHLDGADAHEPWQQPDGYAHDYPQRIVDHAEQRREALDRLAAAKAG
>LT985188.1|SPD86497.1|1453046_1453349_+|protein-of-unknown-function
MAGSSKNTGSTSPSACAAAKAGWSARRRSRRSHRILVMHPIVACRASGPNPPQGVIRIRGRFYLWLRGRFYFWFRGRFSFGSGDGSCSGSGNGSLDPDLK
>LT985188.1|SPD86498.1|1453449_1454766_+|6-phospho-beta-glucosidase
MKLTIVGGGGFRVPLVHAALLADDLIDEVVLFDTDPDRLAVIDRVLTAQSRPDTELRHRTSTDPAEALAGADFVFSAMRTGGTAGRVLDERIAAQHGVIGQETMGAGGISYALRSIPASLRLARTVAEVAPGAWLINFTNPAGMVTEALSAVHPRVVGICDSPIALARRAIDALALDPARTQIDYVGLNHLGWLTGLQHEGVDRLPELIADPARLASIEEGRLFGAELIGDLGALPNEYLHWFYYRREALAAGGSGRGAFLAEQQARFYSCCPADPSSALDAWNATRLEREQTYGAANRAAAGGFERAETDLVSGGYEGVALAIMRAIARDEPSTLVLNTPNAARLAELPDDAVIEAPCRVDGSGVQPLPQSPLPAHARGLMTTVKQVERWTIEAATTGSAAAARLALTHHPLVDSAAVASALLADYRAAFGELDYLR
>LT985188.1|SPD86499.1|1454850_1455939_-|Winged-helix-DNA-binding-domain-containing-protein
MRISADQALAWRLQRHFLTGARADRVDQVVERLIAVPATPTGSGDPELSIRVRLEPDPGAGMVAAALADGRLIKTFSFRGATHLMTPEQAAVHLAVRCAGRQWELTSWRTHYRLQPDDWPALRAVVRERACSPATWAELAEAVAAEPRFAHLEPEFTGENWTLLKPFMWQGDLCFGPSVDRVVTFQALASNPHWPGLMPLREAGPRAVLAYLDGYGPATAAHLQYWLGGGLSGGRRRIDGWLDQVRPQLTEVHVDGRPALVGSEHLDELRATATDPRTLLLPGYDQWVVGAGTADESIVPPALRPAATKGVGLVLVGGRAVGTWKRSKAGIEVDWGGDGEAPIDALRVAGERLGAAKVTVAA
>LT985188.1|SPD86500.1|1455935_1456328_-|Glyoxalase
MTSFVSHTSVDCANAYELSEFWRGVLGYSMVPDDPNEPGHEECLILDADTGHSVLFIEVPEPKAVKNRLHFDLRPRAGSRDAEVERVLALGATQVADLRRSDGGGWVVLADPEGNEFCMLRSLDEAAQPS
>LT985188.1|SPD86501.1|1456629_1458057_-|DNA-dependent-ATPase
MSRWFELTGAQFSDASSCARRLGAVEDLFGNDDAPAVNLGGGSLSMSRADAPLAVRMRPRTVDEIVGQQHLLKAGSPLRRLAEGDAAMSVFLWGPPGVGKTTIAAVVSQTGNRRFVEISAVTAGVKEVRAELDVARRELARGRSTVLFVDEVHRFNKAQQDVLLPAVENRLVTLIAATTENPSFSVIAPLLSRSLLLTLKPLTDADLGVLLDRALTDERGLGGRVTLSAEGRADLLRLAGGDARRLLTYLEESAAGASADGATDITPDQISRAVDRAAVRYDRDGDQHYDVISAFIKSLRGSDVQAALHWFARMLEAGEDPRFIARRLVILASEDIGLAAPQVLQTCVAAAQAVQLIGMPEARLNLAQAVITCALAPKSNAVIMAVDGALADVRAGRIGQVPAHLRDAHYAGAKALGHGKGYQYAHDHPHGVAAQQYLPDELIDARYYVPTDHGAEAGMAARMATLDDLLGRPAT
>LT985188.1|SPD86502.1|1458162_1458831_+|putative-PadR-family-transcriptional-regulator
MRNDNTFNENGPRQSRGHHGRPQRGAFGEGHNRGGFGPGFPFGGPGFGGPMGPFGGPGGRRGGRGRARRGDVRQAVLALLADEPLNGYQMIQKLAEHTEGGWKPSPGAIYPALAQLEDEGLIEQFDNEGTKAYRLTEAGQSAAGEIGQKPWETFNAENAPLHPEAMKAMWSEFRGLAMAAQELTRNGSQAQQERASQLLAETKRKLYGLLADSDVHNGDDLR

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Crispr_ID: LT985188_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_8

1477082-1477180

Orphan

Consensus_repeat	Method
GACCTTCGTCGGGATGACGAGCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_8

>merge|LT985188|8|1477082-1477180|CRISPRCasFinder
GACCTTCGTCGGGATGACGAGCGCAAAGGTCTCAACACGCTCGACCAACGAACCCGAACGGCAGGAGAGATCCGGACGTTCGTCGGGATGACGAGCGCA

>LT985188|8|8|1477082-1477180|CRISPRCasFinder
GACCTTCGTCGGGATGACGAGCGCA	AAGGTCTCAACACGCTCGACCAACGAACCCGAACGGCAGGAGAGATCCG
GACGTTCGTCGGGATGACGAGCGCA

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD86524.1\|1480179_1481205_-\|Beta-lactamase	unknown	unknown	gnl\|CDD\|365903
LT985188.1\|SPD86528.1\|1483775_1485194_-\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
LT985188.1\|SPD86512.1\|1467883_1470316_-\|GTP-pyrophosphokinase-(RelA/SpoT)	unknown	unknown	gnl\|CDD\|223394
LT985188.1\|SPD86519.1\|1476349_1476886_-\|Crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
LT985188.1\|SPD86516.1\|1474041_1474500_-\|Preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|376903
LT985188.1\|SPD86529.1\|1485295_1485781_+\|putative-Peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223619
LT985188.1\|SPD86510.1\|1464974_1466225_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377186
LT985188.1\|SPD86520.1\|1477424_1478189_-\|conserved-hypothetical-protein	unknown	unknown	gnl\|CDD\|234640
LT985188.1\|SPD86525.1\|1481450_1482077_-\|Imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|237290
LT985188.1\|SPD86517.1\|1474722_1475757_-\|Holliday-junction-DNA-helicase,-ATP-dependent-component	unknown	unknown	gnl\|CDD\|234619
LT985188.1\|SPD86521.1\|1478189_1479194_-\|putative-Mycothiol-synthase	unknown	unknown	gnl\|CDD\|235142
LT985188.1\|SPD86523.1\|1480005_1480179_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD86522.1\|1479218_1479953_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase	unknown	unknown	gnl\|CDD\|237589
LT985188.1\|SPD86513.1\|1470482_1471022_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
LT985188.1\|SPD86527.1\|1482684_1483779_-\|Histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|235115
LT985188.1\|SPD86526.1\|1482073_1482688_-\|imidazoleglycerol-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|234873
LT985188.1\|SPD86518.1\|1475753_1476353_-\|Holliday-junction-ATP-dependent-DNA-helicase-RuvA	unknown	unknown	gnl\|CDD\|234645
LT985188.1\|SPD86515.1\|1472230_1474021_-\|Protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
LT985188.1\|SPD86514.1\|1471025_1472231_-\|Protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
LT985188.1\|SPD86511.1\|1466367_1467720_-\|Alkaline-phosphatase	unknown	unknown	gnl\|CDD\|293736

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD86524.1\|1480179_1481205_-\|Beta-lactamase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.0008e-45
LT985188.1\|SPD86528.1\|1483775_1485194_-\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
LT985188.1\|SPD86512.1\|1467883_1470316_-\|GTP-pyrophosphokinase-(RelA/SpoT)	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
LT985188.1\|SPD86519.1\|1476349_1476886_-\|Crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	5.35193e-76
LT985188.1\|SPD86516.1\|1474041_1474500_-\|Preprotein-translocase-subunit-YajC	gnl\|CDD\|376903	pfam02699, YajC, Preprotein translocase subunit. See.	9.76624e-33
LT985188.1\|SPD86529.1\|1485295_1485781_+\|putative-Peptidylprolyl-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	3.23156e-41
LT985188.1\|SPD86510.1\|1464974_1466225_+\|conserved-protein-of-unknown-function	gnl\|CDD\|377186	pfam03993, DUF349, Domain of Unknown Function (DUF349). This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.	1.22713e-15
LT985188.1\|SPD86520.1\|1477424_1478189_-\|conserved-hypothetical-protein	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	7.34252e-132
LT985188.1\|SPD86525.1\|1481450_1482077_-\|Imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|237290	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	6.39893e-101
LT985188.1\|SPD86517.1\|1474722_1475757_-\|Holliday-junction-DNA-helicase,-ATP-dependent-component	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
LT985188.1\|SPD86521.1\|1478189_1479194_-\|putative-Mycothiol-synthase	gnl\|CDD\|235142	PRK03624, PRK03624, putative acetyltransferase; Provisional.	1.49286e-05
LT985188.1\|SPD86522.1\|1479218_1479953_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase	gnl\|CDD\|237589	PRK14024, PRK14024, phosphoribosyl isomerase A; Provisional.	1.12471e-134
LT985188.1\|SPD86513.1\|1470482_1471022_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	3.5858e-79
LT985188.1\|SPD86527.1\|1482684_1483779_-\|Histidinol-phosphate-aminotransferase	gnl\|CDD\|235115	PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional.	0
LT985188.1\|SPD86526.1\|1482073_1482688_-\|imidazoleglycerol-phosphate-dehydratase	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	1.84243e-111
LT985188.1\|SPD86518.1\|1475753_1476353_-\|Holliday-junction-ATP-dependent-DNA-helicase-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	6.66042e-66
LT985188.1\|SPD86515.1\|1472230_1474021_-\|Protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	1.3501e-109
LT985188.1\|SPD86514.1\|1471025_1472231_-\|Protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.06954e-101
LT985188.1\|SPD86511.1\|1466367_1467720_-\|Alkaline-phosphatase	gnl\|CDD\|293736	cd16012, ALP, Alkaline Phosphatase. Alkaline phosphatases are non-specific membrane-bound phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity. Mammalian alkaline phosphatase is divided into four isozymes depending upon the site of tissue expression. They are Intestinal ALP, Placental ALP, Germ cell ALP and tissue nonspecific alkaline phosphatase or liver/bone/kidney (L/B/K) ALP.	2.29485e-100

>LT985188.1|SPD86519.1|1476349_1476886_-|Crossover-junction-endodeoxyribonuclease-RuvC
MRVLGVDPGLTRCGVGVVDGAPGRPPVLVEAGVIRTPADADLPLRLLAIETELEQWVARHRPEVIAVERVFSQHNTMTVIGTAQAAGVTMLVAARHKLPVHQHTPSEVKAAITGSGRADKAQIGLMVTRVLKLAEAPKPADAADAVALAICHLWRGAGQARVAAALDQARRLQGRRGA
>LT985188.1|SPD86518.1|1475753_1476353_-|Holliday-junction-ATP-dependent-DNA-helicase-RuvA
MIAQLTGTVIAAGATHVVLDVNGFGVKALCTPATAAAVRLGQPATLATSLVVREDSLTLYGFTEADERDCFELVQSASGIGPKIAQAVVSVLSPDALRAAIAAENIAALTKVPGIGVKGAQRLVIELKDKINALAATSGLPATTEAPDWREQVKGGLEGLGWSARDADRACDNVAGMVETDPATPVAVLMRAALRSLAK
>LT985188.1|SPD86517.1|1474722_1475757_-|Holliday-junction-DNA-helicase,-ATP-dependent-component
MTRAAEDPMDPHQHDDDTVAESALRPGSLAEFAGQPRVSDQLGLVLDAARHRGSVPDHVLLSGPPGLGKTTLAMIIAAELGVPIRISSGPAIQHAGDLAAILSGLTEGEVFFLDEIHRMSRPAEEMLYLAMEDFRVDVVVGKGPGATAIPLDIPPFTLVGATTRAGLLPGPLRDRFGFTGQLDFYETDSLRAIVRRSARLLGITLVADTDEVIASRSRGTPRIANRLLRRVRDYAQVRADGLLTPAVAAAALELYEVDELGLDRLDRSVLSALCERFNGGPVGLSTLAMAVGEERETVEEVAEPFLVRQGFLMRTPRGRVATARGWAHLGLTMPASAEPDLFGG
>LT985188.1|SPD86516.1|1474041_1474500_-|Preprotein-translocase-subunit-YajC
MGDMGSTVLMLVLMGAAFYFLLIRPQQKRAKKQAEMTNALAPGARVMLSSGVFGTIRHLGDRQAIIEIAPGIEMTVVKQAIVKTLTPEDDEFEYADDAAEPDHIEREADEVDEAAEPNPFENIQPSDFNDPRLTDAPADPPSDDVPGQNTQK
>LT985188.1|SPD86515.1|1472230_1474021_-|Protein-translocase-subunit-SecD
MATTSRHHSHPLRTLIVFLVITAGLFGLMALGGVWTPKLGLDLRGGTTITLTASNTSGEGAVDPASLELARTIIQQRVDAIGVGESEVTTSGDRQIIVSVPNVQQDELVRMVGQTAQLYFRLVYASEQVASAQPSVEPTQAASEPAATQPAATETAQPTESAVPSATTSPSTNPRPLPALPTPVPSPRPTVAGATPPTTQQVLDWTPSKRDQSDYTNFQCGDPFPDVSDQPLITCDEGHTTKYLLSPAVISGKDLNSAQAGIPQNGVSWVVNLEFNGTAATTFETVTRAISTKTSPQNQFAIVLDGTVISSPYVSAAIPGGRAEISGSFNQASATQLANVLKYGALPLAFDVSSVDNVSAKLGGEQLEAGIIAGIIGLALVVAYSILYYRALSIVVVSSLVVAFGITYALVVLLGQAMGFALNLPGVAGLIVAIGVTADSFIIYFERIRDEVRDGRSLRSAIETGWERSRQTILIADGVSLLSAVVLFILAIGSVRGFAFTLGLTTLIDIAVVFWFTKPLVSLLGRTRYFGEGRKFSGFEPDHLGARHQPPLHRRRRAAATGAGKAAKVPATAGKAAAGKSAAAKASTPDSTTEEA
>LT985188.1|SPD86514.1|1471025_1472231_-|Protein-translocase-subunit-SecF
MSTATTEPKKTGEPKVKKASFAHKLYTGEVEYDFVGNRKRWYIISGVLLTISILALAILRLNLGIEFKGGADFTVPVSVSAGTPDQMRSAVEALNLPDNDDIQVISVGDNQVRVQTRSLSVDEVTQVKQALATASGGIAVDEVGYSLIGASWGSMITQQALIALAVFLVLVSLLIWAYFRNFKMAIAAIVALLHDLIITIGIYALVGFTVTPATLIGVLTILGYSLYDTVVVFDKVRENTADIKNTRITYADAANAAVNQVLIRSINTTIIGVLPVAALTFAGTFILGTGPLKDLGLALLVGMIAGAYSSIFIAAPLLAQLKEAEPEMREHRERLARRAERHTVKDKAAATSKSVVITDGDGPLAEVDEIEPERLGLVSANDLARQNRVQPSRSTRAQRKK
>LT985188.1|SPD86513.1|1470482_1471022_-|adenine-phosphoribosyltransferase
MTFSDDHQLVLDLIEDIPDFPKPGVVFKDITPLLASPKGLRAAINALVALAPPDIDVVVGMEARGFILAAPVALELGAGFVPVRKPGKLPGELYSEQFSLEYGHETLTVKTDAVLPGARVLVIDDVLATGGTVGATAALVHRLGADLVHVAVLMELGFLPGREKLAELGIHNYSAVVTV
>LT985188.1|SPD86512.1|1467883_1470316_-|GTP-pyrophosphokinase-(RelA/SpoT)
MRGEPVGDRDDGRRAQAAGDGALSWRQYDADLPKGSGLTESVHGPYGAGNGLPGEPRALSQPGNAAEQPRMRMRHALARLGAPKNSQAAVLDPLVKTLRSNHARADIAVIERAYRTAEHYHAGQTRKSGDPYITHPLAVATILAELGMTETTLCAALLHDTVEDTSYTMAQLTADFGQEVATMVDGVTKLDKVTYGESAKAETLRKMVLAMSRDIRVLVIKLADRLHNMRTLGFLRQDKQAVIANDTLEIFAPLAHRLGMNAIKWELEDLAFATLHPKIYDEIVRMVAARAPLRENYLRQVIDQVKDDLAEARIKATVYGRPKHYYSIYQKMVVRGRDFFEIYDLVGLRILVDAQRDCYGALGVLHARWNPLPGRFKDYIAMPKFNLYQSLHTTVLGPDSKPVEFQIRTHEMHRQAEYGVAAHWKYKEGKAPSSGNDLSWVRQITEWQRETEDPADFLDTLRFEINTTEVFVFTPKGDVISLPAGSTPVDFAYAVHTEVGHRTIGARVNQRLVPLEYQLNNGDQVEVLTSKSPNAGPSRDWLNFVASPRARTKIRQYFMRERREESIEQGKEALAKRLRRTGLPVHRLLSAEHVAALARHFRVADVTALYAAIGEGTVSAQTVVERLIAAEGGAEEAAEASVEDHSTITTTPRRRASRRSDDVGVVVEGHTDLRVKLAKCCMPVPGDDIIGFITREEGVSVHRADCTNAENLRQKPDRLVQVNWATPSADSSFLVALHVEGLDRAGLLSDVSRVMTEHHSNILSMSATTNKDRVFTMRLQFETPDPTHLASLTNALKRIPGVYEANRVKN
>LT985188.1|SPD86511.1|1466367_1467720_-|Alkaline-phosphatase
MPKHSHTHPAQLAGRATGVLAVAVAALLASTVSGASMAQVRVADRPVTLTAESVNTPEVAGYDINTKGRARNVIFIQGDGMGVAHRELLRLALKGQNGDLVMNKMQVTGLVHTDSADTAQAVTDSAAAATAYATGVRSYNGAIGVDVNGKPVTNLLERARAAGKSTGLVTTAQVTDASPGAFSAHVANRSDQSEIARQIIEQSRVDVVLGGGEDWWYPAGNPGAWPDNPPTDPTEQSKGTKGNLVDRAKQLKYQYVTNAAELGKVNKGKVLGLFANEEMFEYHNEGEGDLYDPSVRLPVMATKAIDLLSRDRDGFFLFIEEEGIDEMAHHSNAKLMIKAGAELDRTVKIALDFAARTPGTLVLVVGDHETGGLAIENVDPNDENGSGEQSEDTVAIAHSNLKMVADWTTNGHTGAATPVTASGPGAQRLAGFIKNTQVHDAVLKAMGFRR
>LT985188.1|SPD86510.1|1464974_1466225_+|conserved-protein-of-unknown-function
MVAMTSSSPADFGRVDPDGTVYVRTAEGERSVGQIPDVTEAEALAFYTRRFEALDLEVSLLERRIASGALSPDEARHSINTVTGNVTGANAVGDLDGLTTRLQALAPVLAQASAERRAERAKQAEATKATKEGMVAEAEQLALSNDWRGGVNRFRSLLDEWKALPRIDRATDDALWHRFSTARTTYTRRRKAQFAEQAEKREGARQLKEQIIAEARPLAESTDWGPTAGAFRDLMTRWKAAGSAPREVDDALWAEFRGLQDTFFNARQSTLSQQDEEFKANLDAKEALLAKAEAEIVPVTDLDASRNAFRTFLEQFNALGKVPRESIRGLDNRVRALETAVRQAEDAEWKRTDPEARARAEETVAMLSSEIDKLSEKITKAEARGDKKAADKARDSIATYQSWLDQARETLADFSR
>LT985188.1|SPD86520.1|1477424_1478189_-|conserved-hypothetical-protein
MSGHSKWATTKHKKAAIDAKRGKLFANLIKKIEVAARVGGGDPGGNPTLYDAIQKAKKNSVPNDNIDRAVKRGSGVGGEQVDYTEIMYEAYGPGGVAILIECLTDNRNRSASDVKVAVTRNGGTMADVGSVSRIFDRKGIVEVAKSQGGKNVEEDDLLEATLDADPEDVSDEGETLRVISDPSVVVDVRKAVQSAGYDYESAEVQFVPQYTTSIDAKEAAEKLFRLLDAIEDVDDVQTVYSNEDVPEAVLAELE
>LT985188.1|SPD86521.1|1478189_1479194_-|putative-Mycothiol-synthase
MPTPAMSHGCTWHRLTVHDLPEIQNLIAAEEYLGDATHHHDLSALTVALADDPEAVSGNGVVLRKPSGTLIAYGWLQPPAPGESGGQVYLHGGCHPAWRHEGVQPTLLDWESERAIEWYLEQNDDTTVPLQLVVVTSSNNHLMAELLPSKGFPPQRWYHAMRRPLDSILPGELPGITFVPFDAAWSEPVRLLYNQTLSLPSDELDADAWAWGLKAAGIRDDLSWVALDGSQPVGWVLNGVMDLAGETSGWTEYLGAQPQWRNRGMFKALLARSHESFRTAGLSQAGIGVETDSDQGARPYLALGYQPVDTMVWYVKHVSLGTILSAQADEADGA
>LT985188.1|SPD86522.1|1479218_1479953_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase
MTALTLLPAVDVQNGQAVQLTQGVAGSEKVFGDPLAAALRWQHAGAQWLHLVDLDAAFGRGSNADVIATITEQLHLNVELSGGLRDDASLERALATGCRRVNIGTAALENPAWCERIIAEHGDRIGIAIDVKGTKLAARGWVREGGDWAEAVDRLTAAGCATFVVTDVKSDGMLTGPNLDLLRDVATRTDAQVIASGGIAQLDDLRALRELVASGVTGAIVGTALYVGNFTLPEALAVAAGETH
>LT985188.1|SPD86523.1|1480005_1480179_+|protein-of-unknown-function
MDQQVSELTAAEVAWLDELLGGLRGDGVDPLDLDALTRYYDQGYASWQASGGLLTRR
>LT985188.1|SPD86524.1|1480179_1481205_-|Beta-lactamase
MDDPTAALTLAAHEQGFSGVVRIDEAGTVTELAFGLADRAHNLPNTPDTRFGMASGTKTFTALAVLSLVADGTMGLDDPARRWLGDDLPQISDGVTLRRLLSHTSGVGEGIDDDAEVDVHLLPGAPHSYESPEDYLSVIDRPMQAEPGTEFFYNNSGFVLLGLLAQRASGVGYHDLVRQRVFEPAGLTRTDFLRSDDLPGDAAVGYLFPDATRTNVLHLPIVGAPDGGSYTTAADLRTFWTALAAGRIVPADLVQLMGTSPPGNDPDDDYGLGVWLPRPGVVQMIGADAGVSMVSEHDPAADFTMTVLSNDSEGAWPMWTVLRELTGTGSGDPDDDEPTDG
>LT985188.1|SPD86525.1|1481450_1482077_-|Imidazole-glycerol-phosphate-synthase-subunit-HisH
MTKPLVVVLDYGSGNLHSATRALVAAGADVTLTADADAALNADGLVVPGVGAFAACMDGLRAVGGPELIRSRLDDGRPVLGICVGHQVMFGHGVEHGLDTAGVGILPGVVERLRCERLPHMGWNTVEPPPSTTLFAGLAGERFYFVHSYAVRAADRLPNDARVTWADHDGDRFVAGVEVGALSSTQFHPEKSGQAGAALLRNWIATLG
>LT985188.1|SPD86526.1|1482073_1482688_-|imidazoleglycerol-phosphate-dehydratase
MTARTAVVERSTSESTVRVALNLDGTGASTISTGVGFYDHMLTALAKHSLIDLEVTTTGDLHIDGHHSIEDTAIVIGQALREALGDKRGIVRFGDATVPLDEALAHAVVDVAGRPYVVCEGEPEGQVYALIGGSGVPYAGSMTYHLMQSLAINAGICLHLRLLAGRDPHHIVEAQFKAVARALRIAVAIDPRVADAIPSTKGSL
>LT985188.1|SPD86527.1|1482684_1483779_-|Histidinol-phosphate-aminotransferase
MRPDPSLADLPLRPELIGEEPYGAPQLAVDVQLNVNENPFAPSAEIAADMAATLTAAATAFNRYPDREAKRLRCALARYLGHGLDLDNVWAANGSNEVMTHILGAFAGPGRTLLAFTPTYSMYPEYARNTHTRYVTAPRHPDFTLDADLVLAAIAEHDADVVIITTPNNPTGTPTPLSVTEAVLQGTDAIVVIDEAYQEFSKHPENTALTLLPSYGNLIVSRTMSKAFALAGGRVGYLAAAPAIVDACRIVRLPYHLSSQTQLVAEVALRHADHLLGQVDQLRRTRDEMLVRLPQLGVEVIDSDANFCLFGPFADRHDVWQRLLDRGVLVRETGPQGWLRVSVGTPDETEAFYAALAEVLKEVR
>LT985188.1|SPD86528.1|1483775_1485194_-|histidinol-dehydrogenase
MRVIRTLDLRGSTPDYRTVVPRAPMDVEHAVERVRPICDAVAERGADAIAELSARFDGCVPASLRVPAEAIAAAEQALTPELRAALTESIRRRRAVAEVEARAESLRTEPAPGAVVESLAVPVDRVGLYVPGGLAPLASSVLMNVIPAQVAGVPSIAVASPPQAEFDALPHPTILAVCALLGVTEVYAVGGAQAIAMFAHGVPDLCAPVDMVTGPGNIYVVAAKRLLRGKVGIDSEAGPTEIAILADGSADPRFVAADLISQAEHDPMAGAVLVTDSLSLAESVRAELEPQVAATRHADRIRTALAGAQSAIVLVDDLDQGLDVVNAYAAEHLEIHTRDARAVAARVRNAGAVFVGPWSPVSLGDYSAGSTHVLPTAGCACHSSGLNVNSFLKHVHVIDYSRDALLAVATTVETFAEAENLPAHGAAVTVRRSAAHVVSANAGISNPSSEIPASAGMTGAPVGITRAEGAGR
>LT985188.1|SPD86529.1|1485295_1485781_+|putative-Peptidylprolyl-isomerase
MSQNKNRPLSQNKNRPRLLLTSHGRAAVLSGPCAKVEPMSMEKPEIDFPGEAPDDMVIDDIVVGTGDEAKAGDTVIVHYVGVAHSSGEEFDASYNRQEPLRFRLGIGQVISGWDQGVVGMKVGGRRQLTIPPHLGYGDRGAGGVIKPGETLIFVVDLLGVR

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Crispr_ID: LT985188_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_11

2404475-2404595

Orphan

Consensus_repeat	Method
CCGGGTGGCGCGAGATAGGAACCGTCCCCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_11

>merge|LT985188|11|2404475-2404595|CRISPRCasFinder
CCGGGTGGCGCGAGATAGGAACCGTCCCCAACACGCGCCAGAACCGTCCCGTCATCGCGGCGAACGCCGGGATCCCTGCGCCCCACCGACCGGGTGGCGCGAGATAGGAACCGTCCCCAAC

>LT985188|11|11|2404475-2404595|CRISPRCasFinder
CCGGGTGGCGCGAGATAGGAACCGTCCCCAAC	ACGCGCCAGAACCGTCCCGTCATCGCGGCGAACGCCGGGATCCCTGCGCCCCACCGA
CCGGGTGGCGCGAGATAGGAACCGTCCCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD87494.1\|2390101_2391697_+\|putative-3-oxosteroid-1-dehydrogenase	unknown	unknown	gnl\|CDD\|183787
LT985188.1\|SPD87511.1\|2413942_2415373_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|273198
LT985188.1\|SPD87501.1\|2398407_2400177_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223562
LT985188.1\|SPD87503.1\|2402678_2404457_+\|Malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
LT985188.1\|SPD87508.1\|2411333_2413142_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173866
LT985188.1\|SPD87498.1\|2395596_2396301_+\|Octanoyltransferase	unknown	unknown	gnl\|CDD\|184638
LT985188.1\|SPD87513.1\|2415726_2416704_-\|Oxidoreductase	unknown	unknown	gnl\|CDD\|176215
LT985188.1\|SPD87502.1\|2400198_2402679_+\|Malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|200475
LT985188.1\|SPD87507.1\|2409587_2411114_-\|Dipeptide/oligopeptide/nickel-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
LT985188.1\|SPD87504.1\|2404624_2406856_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|274152
LT985188.1\|SPD87496.1\|2392255_2394106_+\|Dihydrolipoyllysine-residue-acetyltransferase-component-of-pyruvate-dehydrogenase-complex	unknown	unknown	gnl\|CDD\|200219
LT985188.1\|SPD87497.1\|2394446_2395319_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|380141
LT985188.1\|SPD87499.1\|2396384_2397386_+\|lipoate-synthase	unknown	unknown	gnl\|CDD\|235493
LT985188.1\|SPD87505.1\|2407039_2408851_-\|Glutathione-import-ATP-binding-protein-GsiA	unknown	unknown	gnl\|CDD\|224048
LT985188.1\|SPD87506.1\|2408847_2409591_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|224094
LT985188.1\|SPD87512.1\|2415438_2415714_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87500.1\|2397375_2398140_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|379389
LT985188.1\|SPD87495.1\|2391810_2392080_-\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87510.1\|2413367_2413790_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
LT985188.1\|SPD87509.1\|2413039_2413339_-\|protein-of-unknown-function	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD87494.1\|2390101_2391697_+\|putative-3-oxosteroid-1-dehydrogenase	gnl\|CDD\|183787	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.	2.19053e-123
LT985188.1\|SPD87511.1\|2413942_2415373_+\|glutamine-synthetase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
LT985188.1\|SPD87501.1\|2398407_2400177_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	8.86218e-157
LT985188.1\|SPD87503.1\|2402678_2404457_+\|Malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
LT985188.1\|SPD87508.1\|2411333_2413142_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173866	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.03824e-100
LT985188.1\|SPD87498.1\|2395596_2396301_+\|Octanoyltransferase	gnl\|CDD\|184638	PRK14345, PRK14345, lipoyl(octanoyl) transferase LipB.	1.79104e-92
LT985188.1\|SPD87513.1\|2415726_2416704_-\|Oxidoreductase	gnl\|CDD\|176215	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.94169e-97
LT985188.1\|SPD87502.1\|2400198_2402679_+\|Malto-oligosyltrehalose-synthase	gnl\|CDD\|200475	cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase). Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
LT985188.1\|SPD87507.1\|2409587_2411114_-\|Dipeptide/oligopeptide/nickel-ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.27952e-48
LT985188.1\|SPD87504.1\|2404624_2406856_-\|6-phosphofructokinase	gnl\|CDD\|274152	TIGR02478, ATP-dependent_6-phosphofructokinase, 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).	0
LT985188.1\|SPD87496.1\|2392255_2394106_+\|Dihydrolipoyllysine-residue-acetyltransferase-component-of-pyruvate-dehydrogenase-complex	gnl\|CDD\|200219	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).	0
LT985188.1\|SPD87497.1\|2394446_2395319_+\|conserved-protein-of-unknown-function	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	5.25577e-05
LT985188.1\|SPD87499.1\|2396384_2397386_+\|lipoate-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	5.6288e-179
LT985188.1\|SPD87505.1\|2407039_2408851_-\|Glutathione-import-ATP-binding-protein-GsiA	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
LT985188.1\|SPD87506.1\|2408847_2409591_-\|protein-of-unknown-function	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.76867e-19
LT985188.1\|SPD87500.1\|2397375_2398140_+\|conserved-protein-of-unknown-function	gnl\|CDD\|379389	pfam13829, DUF4191, Domain of unknown function (DUF4191).	2.61859e-82
LT985188.1\|SPD87510.1\|2413367_2413790_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.59066e-05

>LT985188.1|SPD87503.1|2402678_2404457_+|Malto-oligosyltrehalose-trehalohydrolase
MLHHYTVWAPEAERVDLVLGAGGERTEPMQATGEGWWAADAEPGDGRYSFALDDGDPWPDPRGRRQPDGVHAPSALVDMSTFTWTDHDWAGKPLKGSVVYEVHVGTFTPSGTFDGAIERLDYLADLGVDVIELMPVASFPGRSGWGYDGVALYSVHEAYGGPEGLQRFVDAAHAHGLAVWLDVVYNHLGPDGNYLPSYGPYFTDRHQTPWGVAVNLDGPGSDQVRAFFTDNVRQWFADYHLDGLRLDAVHALHDDQAVHLLEEMAAIADQISEATGVPRVLVAESDRNDPATVAPRGLGGAGGLGLDGQWADDVHHALHVALTGEAQGYYADFADPQALPKVLGHSPFFHDGTYSSFRGRRHGRPVEPAVTPGWRFIVSLQTHDQVGNRATGDRLGHLAGSGRAAIGAALLLTSPYTPMLFMGEEFDASTPWQYFTDHSEEWLAESIREGRQAEFAEHGWSGEVPDPQDPGTVETSTLEWAELDQPQHAAMLSWYRTLIALRRRLPDVREAVLGEGAVARDGDLLLVRRGELNVVANLGDEPGRLPVALDAEVLAGFGEVRLDDAEVLLGPGSVGLLLAPPPTGVIPVIADA
>LT985188.1|SPD87502.1|2400198_2402679_+|Malto-oligosyltrehalose-synthase
MGPLLARVKRIFARTIRRLDWHPAEPVATMTRVTSTTQVRPFTGTYRLQLHAGFTLDDACGVVPYLADLGVSHLYLAPILTAVPGSVHGYDVLDHTAINPELGGRPALARLAHTAHEHGLGIVVDIVPNHMALVAPQWRNAPLWQVLREGPTSAAAHWFDVDWAHLDGRFGLPILGGTLADELAAGSLTLDVGRPDEGPAAGAPVLRYYDHVLPLNPDGPTSGDLGDVLAAQHWLLASHTEAADVLNYRRFFEVDQLVAIRVELPDVFDATHALLLELHHAGVIDGFRVDHPDGLADPEAYLARLADKCRPGTPIWVEKILEGHERLPEWAAAGTTGYDAAFALDTALVDPATVETVTTAWVATGGEPSLEACTAQSKRQVLDQLLQPELNRLQRAAAKALPGHEPSALREALTELLVELHVYRAYVRPGTEPDAQLVAPLHEALARVHDDHPDLAEAATDLAGVLERPGTAPGDAEAAADLCVRFQQTTGPVMAKGIEDTTFYRWHRLCALNEVGFDPVTGEHPGTADLHAWAAHQADHWPLGLTGLSTHDTKRSEDVRARLLALAGDADAWTRLSALAVAAADAHGVDLATAHLVWQTLAGVGRITPERLDAYLTKAIREAKQHTSWLQPDDDYEKRVLDLGRSILAGDELGVAIAAAVRDNRAAIRSVTLAQKLVQLTLPGVPDTYQGACQLNLTLVDPDNRDDIDFAAHSARLARLDAGGALESLDDEVMLVTSRTLRLRRERAELFADDYRALNLPPGLLGFGRGDDVVVVVQQGRAAAAGDVDLPNDTWVDVLTGNRFDGATAAADLLATLPVALLVREG
>LT985188.1|SPD87501.1|2398407_2400177_-|ABC-transporter-ATP-binding-protein
MAFLLAGEALHLEYPTRVVFDGVTAGLNEGDRIGVVGRNGDGKSSLLGMLAGRITPDGGRVLVRGGVRIGVLDQADTLPDGLTVAHAIVGDAPEHEWAGDARVRDVIAGLVADLPWDAPLGTLSGGQRRRVALAALLVGDWDVLMLDEPTNHLDVEGITWLAGHLKARWARTAGGLLVVTHDRWFLDEVATATWEVHDQLVEPFEGGYAAYVLQRVERDRQAAAVEAKRQNLMRKELAWLRRGAPARTSKPKFRIDAANQLISDVPPPRDQLALSRLATARLGKDVVDLIDAGVSFGDNEVLRHVEWRIAPGERTAILGANGSGKSTLLNLIAGQVAPSVGRVKTGKTVKLAVLDQQFRELAAIADERVREVLARARTSYVVDGRELTPAQLLERLGFAREHLSARVGELSGGQKRRLQLLLVLLSEPNVLILDEPSNDVDTDMLAAVEDLLDTWPGTLLVVSHDRYFVERVTNQQYAIIDGRLRHLPGGVDEYLLLRTADRAAAPVPRSATGPKASAAEARAARKELDAIERKIERLARHIDTLHERMAGHDHSDYAGLAALDADVKAAEAETEALETQWLELSELAG
>LT985188.1|SPD87500.1|2397375_2398140_+|conserved-protein-of-unknown-function
MASEKAKALAAQQKQERKAEKLRKKSSDDPRDWGRVRQIIEAYKRTNELDPELKWWTLLAVAGPIVLMLAVGFWLQPWWLWLITGVMFALVAALYVLTWRVKKANFKRYEGQAGSAEVAFQLLNKKKWSYEIGIAATRQMDVVHRVIGAPGIVLVGEGSSPARTRQLLATEAKKHEQVAYGVPVTTVLVGKDQGQVPLDALQKHLEKLPKALQPHQLTEVKQRLKALDAMRPRIPVPRGPMPTMKGVNRAMRGR
>LT985188.1|SPD87499.1|2396384_2397386_+|lipoate-synthase
MTLADDAVSPAPSAPPAGRKLLRLEVRNSQTPIERKPPWIRTTARMGPEYRGLMKLVQDENLHTVCQEAGCPNIFECWEDKEATFLIGGDSCTRRCDFCQIESRKPSGYDRGEPRRVAESVQTMGLRYATVTGVCRDDLEDEGAWLYSETIRQIHHINPGVGVEMLAPDFSGRRELLQQLFDTRPEVFAHNVETVPRIFRRIRPGFSYDRSLEVLRWSREEELVTKSNLILGMGETREEVSQALRDLYDAGTELITITQYLRPSPRHHPIDRWVTPEEFNELEQEAIEIGFPGVLSGPLVRSSYRAGRLYRTALEARRRRARDTITTGSSNGQ
>LT985188.1|SPD87498.1|2395596_2396301_+|Octanoyltransferase
MPSADAVVESVQFERLGLGERLSPYLPTWDYQREVHARVSSGELPAQVLYVEHEPVYTAGHRTTDEQRPRDGTPVIETDRGGLITYHGPGQLVGYPIVRLPDRVGPVAYVRRLEEAIIRTLRPLGIEGGRVEGRTGVWLRADQAQGRLERKIAAIGVRVSRRTTLHGFALNVAAESLGPFAGIIPCGIADADVTSIETELGVAPSLADVADAITPHLAELLTWHDFEMAGWSRD
>LT985188.1|SPD87497.1|2394446_2395319_+|conserved-protein-of-unknown-function
MLPPELAELDVFATSHARRLGLSDADLRAAVNAQSLVRLKRGWYTAQSLPWPADRHRLLAGIEHAARPDTVPSHYSAAILLGLPVFRPDWATVHLMRTTHGAPQNRDGLVIHKQVASFDQPNVALAVAQTALLCPVSGLMAYDAALHSRLLGTDDFASVIGALEGWTGRANLAVVRRLGDGRRESALESRTALVYDRLRFSVEPQFAVPGTAYIADGRIRGTTVLIECDGDGKYVDQRAVLAEKSRENEIRALGWSMIRVTDDMLDRPRLLYARTQTALRDASISAVPAA
>LT985188.1|SPD87496.1|2392255_2394106_+|Dihydrolipoyllysine-residue-acetyltransferase-component-of-pyruvate-dehydrogenase-complex
MSTPVPLPALGESVTEGTVSRWLKQVGDTVEVDEPIVEVSTDKVDTEIPAPAAGVILEIKVGEDEVAAVGAVLAVIGDASEAGGSSDAAPAAPAENVPAEQADAEEPEAPAVAEAPSTDAPAPKPAAGGGGSGTEVTLPQLGESVTEGTISRWLKAVGDEVEADEPIVEVSTDKVDTEIPAPTSGVILEIRVAEDEVAAVGAVIAVIGAAGAAPAEAEAPSDAPEVADETPAEPRGDGITESEERGNEQTAEKAGAEQSAEAPAPAAPAPSAPAPAAPAAAAPAPAAPAASSDSDDAGYVTPLVRKLAAQHGVQLSGVKGTGVGGRVRKQDVLAAAEAAKKAAEAPAPAAAPAAAAPSAPAPAAAPAAQAAPPEGSKRGTTEKISRMRSVIAKRMVESLQIAAQLTGTVEVDLTNISKLRARAKDDFKAREGASLSYLPFICKAVCEALKQFDKVNASMDVEAGTITYHDAEHLGIAVDTERGLLVPVIRDAGDLSLAGLAKKIGDVAARSRTNKISPDELSGGTFTITNYGSAGTLFDTPIINQPQAAILGTGALVKRPMVIKDPALGEVIAVRDMMYLSLSYDHRLVDGADAARFLSVVKARLEGGDFAGELGL
>LT985188.1|SPD87495.1|2391810_2392080_-|conserved-protein-of-unknown-function
MVDAATRSHLDEFVTTRQGVEAFLEPQTTMTRPSLLLVAFDGEWTRRSIESPAWGRQFAARHAVPVYDAGVVGYPQRMRDFNARRKRGH
>LT985188.1|SPD87494.1|2390101_2391697_+|putative-3-oxosteroid-1-dehydrogenase
MQTDVVVVGAGAAGLLAAVAARRLGHDVLVVERSGAVGGSTATTDGALWLPANDLMGRAGLPSDTPAEALGYLDALATPVSAVIAGRRAAFTRTAGVVARWLVTSRIALEVVKSLPDCRPEVEGAKAQGRTVRVRSVPRKLDDDWAGKVRGDDGGRTNQGFWGRLANPFTNPGQLSGGAALVCELLLRAVGSEVEFWLDCPLNELIVEGGVVTGVRVTHVGEQVDVRASKGVILACGGFEADQTLREQHLPLPTEASWSVGIGADGTALAAGAQVDAATTGLAQAWWTPVLLSEGRAHQVDAARVAPHSLIVDQAGDRYLNEAQPSTSAGRRMYEHNRGMRSVPSFLIMDDRHRKAYPLGPWAAGTSPKAAIESGELVRATNLDDLAQALSIDRAGLIGSVVAFNQLAKRGKDTDFGRGDSAWDKHFGDPRLRRNPCLASVDRQPFWAVRLYPGDSGTKGGLVIDDRSRVLRGDGEPVTGLWAVSASAASVFGSAQPAQGAGLAAAVVEAYRAVLDLSGQLDELDAALKAD
>LT985188.1|SPD87504.1|2404624_2406856_-|6-phosphofructokinase
MTEQIGAGKRIGILTSGGDAQGMNAAVRAVVRTAISLGAEVYAVFEGYQGMIDGGAGIRRFGWDDVGNVLHRGGTVIGTFRSKDFRERAGRRAAARNLLANGIDRLVVIGGDGSLSGLDLFRTEWPDLLAELVEAGELDQEVADAHPALMIAGLVGSIDNDLVGTDMTIGADSALHRIVDAIDDLASTAASHQRSFVVEVMGRHCGYLALMAAVAGGCDYVLIPEDPPEAGWEERMCAELARGRAAGRRDSIVVVAEGATDREGNAITSEQVRQIIEQRLGEDTRVTILGHVQRGGRPSAFDRWCSTWLGYEAVRALLAADPGSEGHVFGIRGNRVAAVPLMDAVRNTREVSHLIDAGDYTAAMAARGQSFGVMAQLLRELTEPSRITVNEAGKRIGIMHAGGLAPGMNTAARAAVRLGISRGHTMLGVRDGFPGLRDGRITELAWADVEAWTADGGANLGLRRTIPGIEELYPIGRQLENHQVDALLMIGGWNGYQAMYRLHDERDRYPAFRIPLMCVPASIDNNLPGSELAIGADTALNVIVEAIDRIKQSAAATRRSFVVETMGRYCGYLALMGGLAGGSERVYLHEEGITLAQLNRDIEWLRRSFARGRSLFLAVRNERANEEYTTDVIARMLRAESGGVYDVRQSVLGHQQQGGSPSPFDRLMATRLVGHALDKIAEQLDAGADGSYLVGLTGSRVKDVPMGDMMSLMNTTVRRPHDQWWLRLREVVTAVSDEPEPQS
>LT985188.1|SPD87505.1|2407039_2408851_-|Glutathione-import-ATP-binding-protein-GsiA
MSTETPKATSPSTDLTSAVRLSKSIGGEVKLGDTILKVRDLSVNFWVNGDWFTAADKLNYDLKAGEVLAIVGESGSGKTQSAMSLIGLLPQNGRATGSAKLKDTELIGMNISQLQQVRGNEISVIFQEPMTALNPVYTVGFQIVETLRTHFVMAPSVAKTRAIELMTLVEIPDPEDSFDKFPHQLSGGQRQRIMIAQALACDPKLLIADEPTTALDVTVQGEILKLMRDLRERVTAAIILITHDMGVVADMADRIVVMKDGKVVEHGTSDDIFNRPQHPYTKQLLASVPHLGSATAEEDLPTARLSLVAEGEKTGVPLMSGDASVTPAMLMEDVAIEYPKQGRRAAFRAAHHINLRVDPGEVIGLVGESGSGKTTIGRAAVALLPVVEGKLMINGRDITNAKPSDLKPFRKEVGIVFQDPGSSLNPRLPVGESIGEPIMLHLGLKGSELSKRVENLLESVQLPRSMRNRYPHELSGGQRQRIGIARALALQPKLLIADEPTSALDVSVQARVLKLFQDLQAEYGFACVFISHDLAVVEMLSQRIAVMRHGYLVEVGPTKEIVTDPQHPYTKRLLSAVPVPDPAEQKRRRELRDALLEEHHIVS
>LT985188.1|SPD87506.1|2408847_2409591_-|protein-of-unknown-function
MSNDDKTPGADDLGIEPRPGFDPDAAIETDPLATLPNENDPDAVPSGDDESTGRGEGVGTSKEVEGLSQGQIVWSRFIRHKGAMGGVLALVLIALLSMSSMGIFGIPGWWRIQDYNASGNVVNGAAPTLTLWPFSLGEHPFGQDDIGRDNFALVMKGIQTSLGFGVKPPNVSLGMLISQYQGAFATRPWLFWWPGVFIIFIALSINFIGDGLRDAFDPRTKRIPSQRQMDKAMAQIATGNPSTEGAK
>LT985188.1|SPD87507.1|2409587_2411114_-|Dipeptide/oligopeptide/nickel-ABC-transporter-permease
MLRFIARRLAIAIVLLLLLSILMYWLLDIALDPLDDLRTSPALNRDQLIEIRVAQLSLNDPWYVRYWDWLTSCLRGDFGIAWRTGQRVNDLLGGAALTSIQLVFAATVLALLLGVTVGLLSALRQYTTFDYAITFVSFVLYALPIFWVAVLLKQYLAIGLNDYLNNPVMNWPVAIGVSVVAGLFWAGAIAVGLRRQAIVFASAFAITLGALAYVIYSGWLENPRIGIVGVAVIGAAAAYAVTLIFSGINNRRALYSALTTAAVGVVSYIGLQWLFYYVPMNELWLIALLLVAIGIALLIGWLWGGPDRAVSMRGAAVVAVIISVLVYVDRVLQGWQLYMNASVISGRPIATIGAQTPNLGGDFWISQLDKWTHLLLPTIALVLISFAGYTRYQRGSMLEVMNQDYIRTARAKGLSERLVIVRHALRNALLPLASIVPVDFITMIGGAVITETIFNWAGMGRLFVTSLTGSEIDPVMIYIMITGALAMIANLVADFLYGILDPRIRVNA
>LT985188.1|SPD87508.1|2411333_2413142_-|ABC-transporter-substrate-binding-protein
MGTKKWLAGAAGVFAASLALSACTPTPQASQPGLSQASVATIAWNQAFYSANGVTSFGNATANNNILYMANDAFNYYDKDLNLVPNTSFGTYEKTSDSPLTIKQTLADTATWSDGVPVTPADLILNTFAQSGNFNNYEAKLDDETGDVGGKNTGTKVFFNASSPGFALIKKFPTVEGKTITYEYSKPYVDWDKGLMTTGVPAHVVGKRALGIDDPTQAAQAVSDAFKNKDNAALAKISNVWNSDFNFKTMPADKELLVSNGPYTITDLKAEQYVTLSKNPNYKGSHVPTIDTITVRIIPDAQASVQALQNGEVLATQPQATADILKQMQALPNVTVLNGVGATYEHVDMAQNNKGPFDPAKYGGDADKARKVREAFLYTIPRQKIIDNIIKPLNPDAAIRNSYDVVPGAPNYEQNVAANGMKAKYGEGPSIDKAKALLDEVGVKPTVRFMYASNNTRRQQEFQLIKESAEQAGFTVQDAGNENWGALLSDTSKYDAVLFGWQSTSTGVTGADANYRTKGGNNFYGYSSKTVDGLLDQLQVETDPTKQNELVDKIGAELTKDAFSITIFQFPEPTAVSNRLQNVSSIQLAPTLFWNFWEWKLS
>LT985188.1|SPD87509.1|2413039_2413339_-|protein-of-unknown-function
MRHDRVNSPTPDVGAFRFRNDPATLWGWDCDPSGHLLAWTKLTIGRGCTEAPTRACSIADLDLEEHWAPRNGSLEPRACLPPAWRCPPAPRHRRLRSPA
>LT985188.1|SPD87510.1|2413367_2413790_-|RDD-family-protein
MTDTAEQYPGETLGLPQTGRGSLASWRARVAALILDWAASMALAVILFGVGVLHEPGWRSWMTLAVFFVESSVLTGLAGGSFGQIIAKIGVVRLDGGPIGVLRALARQAMICLVLPTIVIGAERRALNDLALGTVVVNRR
>LT985188.1|SPD87511.1|2413942_2415373_+|glutamine-synthetase
MFQSADDLLAYVKDEGVETIDIRFCDLPGVMQHFTVPAGSFGPEVFEDGLAFDGSSIRGFQKIHESDMALLPDPTSAFIDPFRRSKTLAVSFFVHDPLTKEPYSRDPRNIARKAEAHLQSTGIGDTAFFAPEAEFYIFDSVRFETKQNAAFYYIDSEAGAWNSGAEAEGDGRPNRGYKVKYKGGYFPVAPVDHFSDLRDDMVRNLEQAGLTVERAHHEVGTAGQAEINYRFNTMLAAADEVMKFKYIIKNTAWAAGKTVTFMPKPIFGDNGSGMHVHQSLWADGNPLFYDENGYGQLSDMARYYIGGLLHHAPSLLAFTNPTVNSYHRLVPGFEAPTNLVYSARNRSACIRIPLTGSNPKAKRIEFRCPDPSSNPYLAFAACLLAGLDGIQNKIEPLPPVDKDLYELPPEEHAKVPTVPPSLEGVLDKLEADHDYLLAGDVFTPDLIETWIDMKRADISAIRQRPHPHEFEMYYDM
>LT985188.1|SPD87512.1|2415438_2415714_+|protein-of-unknown-function
MIASRQATTSGAANQQRPTFRWSSLSRPSPFRWSDLSRPCRETRGVRSMVRPGINVTAFVTRDCLPAGSYVSQGQSRGTPPPVARPSRVCE
>LT985188.1|SPD87513.1|2415726_2416704_-|Oxidoreductase
MRAAFYERQGAADHVLQVGELPDPLPGTGEVRVRLHYSAVNPGDTKKRAGYFGSSMPYPLVIPHSDGSGVIDLVGAGVDSGRVGSQVWVYNAQSYRPFGTAAQYACVPEHTAVPLPDELDDRLAACLGIAGITAHRAVFADGPVTGRTVLVHGVLGAVGSLAAQLARWGGARVIGTVRRGQDLAEVAPGLDLTVALDDSDVEQAIAEVAPEGVERIIEVAFSDNVDLDARVAANGAVIAAYATRDPRPAIDFWPMLFDNLTIRLLGSDDFPEPAKRQAALDLTAAAAGGHLRVPIGSPLPLAEIAAAHDLVDSDNRRRVVLDVTA

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Crispr_ID: LT985188_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_12

2783999-2784079

Orphan

Consensus_repeat	Method
GGACGGTTCCGATTACCGTTCAGCCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_12

>merge|LT985188|12|2783999-2784079|CRISPRCasFinder
GGACGGTTCCGATTACCGTTCAGCCACATCCTCAAGCCTCTGGTGGGTAATGGGGACGGTTCCGATTACCGTTCAGTCACA

>LT985188|12|12|2783999-2784079|CRISPRCasFinder
GGACGGTTCCGATTACCGTTCAGCCACA	TCCTCAAGCCTCTGGTGGGTAATGG
GGACGGTTCCGATTACCGTTCAGTCACA

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD87867.1\|2779600_2779807_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87869.1\|2779884_2781261_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87883.1\|2794986_2795328_+\|DGPFAETKE-family-protein	unknown	unknown	gnl\|CDD\|226318
LT985188.1\|SPD87878.1\|2788746_2789004_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87870.1\|2781260_2781833_+\|Short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|226674
LT985188.1\|SPD87874.1\|2784315_2784867_-\|YbaK/prolyl-tRNA-synthetase-associated-region	unknown	unknown	gnl\|CDD\|240137
LT985188.1\|SPD87880.1\|2789858_2791523_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377577
LT985188.1\|SPD87876.1\|2785566_2787660_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223588
LT985188.1\|SPD87877.1\|2787794_2788703_-\|dihydroxynapthoic-acid-synthetase	unknown	unknown	gnl\|CDD\|181386
LT985188.1\|SPD87868.1\|2779866_2781090_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87866.1\|2779029_2779563_-\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87864.1\|2777123_2777957_+\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|376806
LT985188.1\|SPD87879.1\|2789019_2789733_-\|Glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
LT985188.1\|SPD87872.1\|2782948_2783995_+\|Low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|99748
LT985188.1\|SPD87882.1\|2793004_2794915_-\|Peptidase-M3	unknown	unknown	gnl\|CDD\|341050
LT985188.1\|SPD87865.1\|2777965_2778952_+\|Aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
LT985188.1\|SPD87881.1\|2791707_2792808_-\|exported-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|379140
LT985188.1\|SPD87863.1\|2776790_2777045_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD87871.1\|2782088_2782871_+\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|226406
LT985188.1\|SPD87875.1\|2784936_2785455_+\|membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377024

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD87875.1\|2784936_2785455_+\|membrane-protein-of-unknown-function	gnl\|CDD\|377024	pfam03350, UPF0114, Uncharacterized protein family, UPF0114.	4.32781e-29
LT985188.1\|SPD87883.1\|2794986_2795328_+\|DGPFAETKE-family-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	3.39724e-05
LT985188.1\|SPD87870.1\|2781260_2781833_+\|Short-chain-dehydrogenase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	7.31888e-11
LT985188.1\|SPD87874.1\|2784315_2784867_-\|YbaK/prolyl-tRNA-synthetase-associated-region	gnl\|CDD\|240137	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	3.83533e-64
LT985188.1\|SPD87880.1\|2789858_2791523_+\|conserved-protein-of-unknown-function	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
LT985188.1\|SPD87876.1\|2785566_2787660_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.26842e-114
LT985188.1\|SPD87877.1\|2787794_2788703_-\|dihydroxynapthoic-acid-synthetase	gnl\|CDD\|181386	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase.	0
LT985188.1\|SPD87882.1\|2793004_2794915_-\|Peptidase-M3	gnl\|CDD\|341050	cd06455, M3A_TOP, Peptidase M3 thimet oligopeptidase (TOP), also includes neurolysin. Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but are also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasome, limiting the extent of antigen presentation by major histocompatibility complex class I molecules, and has been associated with amyloid protein precursor processing.	0
LT985188.1\|SPD87864.1\|2777123_2777957_+\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.59381e-05
LT985188.1\|SPD87879.1\|2789019_2789733_-\|Glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	1.02887e-88
LT985188.1\|SPD87872.1\|2782948_2783995_+\|Low-specificity-L-threonine-aldolase	gnl\|CDD\|99748	cd06502, TA_like, Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.	2.19382e-112
LT985188.1\|SPD87865.1\|2777965_2778952_+\|Aldose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	2.52104e-132
LT985188.1\|SPD87871.1\|2782088_2782871_+\|protein-of-unknown-function	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	3.79654e-06
LT985188.1\|SPD87881.1\|2791707_2792808_-\|exported-protein-of-unknown-function	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	0.000105022

>LT985188.1|SPD87872.1|2782948_2783995_+|Low-specificity-L-threonine-aldolase
MQLHDPARRGFASDNYSGVHAEVLAAIAAANDGHQSSYGNDAYTARLQQVVQGHFGDRAEAFPMFNGTGANVTALQSVLPRWGAVVCAKTAHINVDEGGAPEKVGGLKLYAVPTPDGKLTPELLDVEAFGFDDEHRAQPLAVSITQSTELGTLYSPDEIAALAAHAHELGMTVHLDGARLSNAAAALGVPFAAFTTDAGVDLLTLGGTKNGALGAEAIVALDPDKAAGLRFLRKTNMQLASKMRFLSAQLIALYEGDLWLRNAGHANAMAARLRSSLEGVPGVEFTQPTQANGVFVRLPAGVADAVREQFFFYDWDGAAREVRWMCSFDTAEEDVDAFAALIRQASGG
>LT985188.1|SPD87871.1|2782088_2782871_+|protein-of-unknown-function
MVRTPVTTAACPDCDAPKTWPGKWANFTDGDPDTVTFGLVSAVTQGANETVVFTDLLGAGQRLNCTSLLVQEADAIDAWGDIQFTGTWTPDSVTCDETAGTLTVTVTSARAGQYFRVLGTAIATETRTSYTDEGTITQRGVTQPVQASAIVYSGGAGGDGETPSPTPTPSEITATATPTPTETTPSETPTPTETTPAANPTPSESTATTTPSTTKATKTPTTPTTSLPQTGTDASALGAGVGLLLVVMGSGALLAARRRR
>LT985188.1|SPD87870.1|2781260_2781833_+|Short-chain-dehydrogenase
MRVVIAGSGSALGDATASALRDAGHEAIEIGPDECDLRDFAAVQALAERLGAVDGVIHLVGGWRGGGGLAAQSDDDWNWLQTMIVGTLRNTTRAFLPAVAASPAGVFAIVSQNGVAKPTAGNANYLAAKAAAETWLLAVGDAMKKGAGRVHVERVMALYSDADVAAEPERDFSRHTHVRDLGRTLAGLFG
>LT985188.1|SPD87869.1|2779884_2781261_+|conserved-protein-of-unknown-function
MTTVADVEVSALTGHPAWLRLKAAATELQTLQAANGAIDEPGDHVHARELLTTLTSAIAELAPLFAHDAAYLDALQADFARWASEGFGVPDFYDSLVLFQPQQLRVDGLTHLVIFPMYTQNGSRSRLVEAVLVQVIWPDFVAELEATDYSNKLFVPIRFLDFTAGYDTNSAVLFPETVAMRQIPTFTWGAIFADREAARFRRVLGAAVEVTKLDLPPEAAELLDDQQLAEETFVMWDLIHDRTHMRGDLPFDPFMIKQRMPFFLYSLEELRCDLTAFRESVAIDRRIAALAEPTAEQLELAHHARLVQYCVIFDRIFRFAITGNRVRNYDGLGGQLLFAWLHQHHVLHWTDTQLAFEWDRVPDCVNELGAAIEHLYWRSIDRPKISHWLAAYELVAATVEPHPASAWKAGDLPLKGLPRELTDLVMDDEFPLSMFYEAFEKKMRDVIASTSGITGTSA
>LT985188.1|SPD87868.1|2779866_2781090_-|protein-of-unknown-function
MRLDGGGHEFVGGQPVRDLGAVDGAPVEVLDGGAQFVDAVGHPIPLEGELGVGPVQHVVLVQPGEQQLAAEAVVIAHPVAGDREAEDAVEDHAVLHEPGVVGQFELLGGGLGQGGDAAIDRHRLAKRGQVAAQFFERVQKERHALLDHERVERQVAAHVGAVVNQVPHHEGLFSELLIVEQFGGLGRQVELGHLDGSAEHPAEPSGLAVGEDRAPGEGGNLPHRDGLGEQDGRVGVVARGEVKKTNRYEQLVAVVGGLELRHEVGPDHLYEHGLNQPAARAVLGVHRKDHEVGQAVHSKLLGLEQHQRVVEVGHAEALGRPPREVGLQGVQVGGVMGEQGRQFGDGAGERGEKFAGVDVVARFVNGSIGRLQGLQFGGGRLQSQPRGVAGEGRDFNISNGRHAEILT
>LT985188.1|SPD87867.1|2779600_2779807_+|protein-of-unknown-function
MVNHIGVGTQAPESANLMRHMRVLGDRLIPDQPFSEPKEPSPGVQGTVLLVTAPSVTPDEIFSFRAEI
>LT985188.1|SPD87866.1|2779029_2779563_-|conserved-protein-of-unknown-function
MHEHDDISVEVSPFQAQGVLSGFLVSGRWPASTVEWARFLLLAVRVASVPGMLLTSTVFRVREERPESSHPGAVGLVIAEGPVVGQNAVLPGQFAAHQPPGLIVLHPPSEIRPSLPEQDDVAAGCVLLPGLPHLGLDHRAAWVEADRRGNIARMVSRAGIDPNEDADTAVLALLLAA
>LT985188.1|SPD87865.1|2777965_2778952_+|Aldose-1-epimerase
MSRSLPSPVPFGSVNGEPVELVRLEADDLAVELLSIGAAVHRVVVAGRDVALGHPDAQGYADSMFCIGLTIGRFANRIGGARFTLDGSRYILSANEGASTLHGGPDGFHRRVWTITEVGPDSVTFGIVSADGDQGFPGELTASVRYTIAPGELRMTYSATTTAPTVVNFTNHSYFNAAGEASGSTDEQLIAVPGAQVVEVNDELIPTGRLVPVGLHDLRTPRRIVDAAPLDTCFVVDGEPGTLRPHATLSATDLAIDVLSDQPGIQLYTADVMNDVPGLTGTYGPRSGLALETQNFPDAPNHEGFPNSVLRPGEQFTSTTIWRFRPLG
>LT985188.1|SPD87864.1|2777123_2777957_+|conserved-membrane-protein-of-unknown-function
MQWGDRDGYVKESTWATLPAVLLGLGAMFLLVYHQYTLGYLLVACGLFGAWLCDFTTLSVGLLADITTVATGVVILSLSDLAADLSNLGMLRFAVVLGGAVAVPYALHRWVFRAEPVKFPWGGWRWNRAQWTYLAAVVVVGYLVLPWYFISTGVYLNWPPVHTPDQVVRLFIGVNAVGIWDELFFICIVFTLYRRHFKLWQANLLQAMIFVSFLWELGYQSWGPLLTIPFALVQGAIFQLTKNLAYVITVHLLFDLVVFLVLIHGHNPAWPHIFITA
>LT985188.1|SPD87863.1|2776790_2777045_+|protein-of-unknown-function
MPPKPPDSDGLDDRVRPLGAARRQGARPPSGGGNTGSTREASDWDSFVRATPVSGRVRSRPALVGLGRDLRWVGLGQDLRRSGF
>LT985188.1|SPD87874.1|2784315_2784867_-|YbaK/prolyl-tRNA-synthetase-associated-region
MQAMSESVFGTLQAMPAVDRPDLLAPPVLAAIGLIPDALVAEIDPAYADTEQLCAQYGVPMDASANAVIVRGTRAGVDKHACCMTLAHRRIDVNNVVRRRLDARKASFAPMDYAVEATGMEYGGINPVGLPEGWPIWVDGAVAERDWVCIGSGVRHSKLFIPVAGLLALPGAERVNDLAREVG
>LT985188.1|SPD87875.1|2784936_2785455_+|membrane-protein-of-unknown-function
MAESSPQKSRKRDGGSVSLTRFIVLVPAIGMMLGAITLTVVGAIEVFNTIVTAFGGHAEAKDYVIAFVEIADVFLLAVVLFIIAIGLYELFIDEISGLPDWLVFNSLDDLKSQLIGVVVVVLAVFFLAAPLRRRRAEPAVPGRRHRRGDRGAVAVSARQTLRPVERVEAPRG
>LT985188.1|SPD87876.1|2785566_2787660_-|DEAD/DEAH-box-helicase
MTALTAAHEAVVTRVIEALAGPGARLRDDQRTAVAALVEPGSRVLVVQATGWGKSAVYWCATALHRAAGRGPTLVVSPLLSLMRDQVAAAAKAGLRAATINSSNVGDWSAIEADLAADALDVVLVSPERLANPGFGARVLQHLAGRLGLLVIDEAHAVSDWGHDFRPDYRRVSDVLQQLNPDTPVLATTATANERVTDDVAAQLGQATLVLRGPLARSSLELAVVDRLSPIQRYAWVVDHLPRLAGSGIVYVLTVADAERLAQAVRVVHGDAVAVAAYTGQLDAEVRHRLEDDLQANRVKALIATSALGMGYDKPDLGFVVHVGSPPSPVSYYQQVGRAGRAIDHASVVLLPSPADEGVWEYFATATIPVEAEVQRLLAALEASDGPASVPQLEAETGLRRTKVELYLKQLAVAGVTERVADGWLATGQPWVFDAEHYDGVLAVRRREAAIMRAYTRGERCLMQLLQESLDDPTAAPCGRCSVCRNTLPVPLEPEPRTETVRTVATGLRGTAQRLDPRKMWPGGEFGARGRIPQGLMAEAGRVLVHADAPEWADTLAGAAAGEAAAVHELAHGCVGVLSRWRTDWPARPEVAVALDTGGYPGLAAEVAGHLARVGRLASASVEVAPGPAPDRDLPSDREAAHWRAALSVPEPTELEGRVVLLVVDATRSQWPVTVAAAKLREAGAAMVLPLVVHRQV
>LT985188.1|SPD87877.1|2787794_2788703_-|dihydroxynapthoic-acid-synthetase
MSSPWRPELWHEVPGFGFTDITYHHANDVPAVRIAFNRPEVRNAFRPQTVDELYTALDHARQSADVGCVLLTGNGPSEKDGGWAFCSGGDQRIRGRSGYQYAEGETADTVDDRRVRAEGGRLHILEVQRLIRFMPKVVIALVNGWAAGGGHSLHVVCDLTVASAEHAKFKQTDADVGSFDAGFGSAYLARQVGQKVAREIFFLGQTYDAQRAYEMGAINKVVPHEQLEDVGLEWAALVCGKSPTAQRMLKFAFNAIDDGLIGQQVFAGETTRLAYMTDEAVEGRDSFLQKRAPDWSKFPYYF
>LT985188.1|SPD87878.1|2788746_2789004_-|protein-of-unknown-function
MGTVPLSRHLGAEEALVFAGRACWDPLRLGVSTRSANDPRVDQRFPDRRAATGVGAALDGNGPAVEVSAQGEVPAQHAHSFVSPQ
>LT985188.1|SPD87879.1|2789019_2789733_-|Glycerophosphoryl-diester-phosphodiesterase
MQIWAHRGASSRQPENTIAAFSAAMAAGVDGVEFDVQLSSDGVPVVIHDEKVDRTHAGTGWVAGQTVAQLQELPSLLKKKPDPLTTRIPTLAEVLDLLAAGDQLINIELKNSVKAYKTLESKVLAMVAERRLADRVVLSSFNHYSLQRLREKGWTGELAAVHDGMLREPWRYFRELDVQAVHPPRHVLMVPGFITRAHRAGFAVRVWTVNKAAQRQRCARLGVDGIFTDVMKPGPNW
>LT985188.1|SPD87880.1|2789858_2791523_+|conserved-protein-of-unknown-function
MSNRTPSDIDTLADDYTRSLADLSPVLATEIGLSGYDHLMGETGPEVHDAIADLNRDTLTKLATLTPRDEVDRVTVAAMNERLGLDLELHVAGEQFRDLNNIASPLQGFRDIFDVMPTDTEEHWSNIASRLAGVPQAVTGYLACLREGVRRGELPPALQVREGIAQAAELAEPETSFFTTFHRESDQSEALSADLTRAGEAAAESYGLLAEFLRELEADAPADDAAGRERYQLWSRTFLGAAVDLDETYEWGLDELARVSAEQDAVIEAIAGPGAGIDDAVRVLDGDPARKLHGTKALQEWMQRTADEAIGELNGVHFDIPEQMRRIECMIAPTQNGGIYYTGPSDDFSRPGRMWWSVPPGVEEFNTWREKTTVYHEGVPGHHLQIGQAVYNRDELNLWRRLVCWVSGHGEGWALYSERLMEEFGYMDDLGDKLGLLDGQRMRATRVVLDIGVHLGKRAPQQYGGGTWNADKAWELLKANVNMDEKFLRFELNRYLGWPGQAPSYKIGQRLWEQVRAEAAEQAGDDFSLKAFHTKALNLGSLPLSVLREAVLAG
>LT985188.1|SPD87881.1|2791707_2792808_-|exported-protein-of-unknown-function
MLAITLTACAGPVATSPEVAGPAPAATASSTPGATPAKPTKPPLAADLAGGTPVQLGPAGHYAILGARAFVADPDGTVTALDLGTGLTAWQAQFTKGTPWDAQPTVGLSADGRTVVAVRTVDVDGVGRLDLLLIDAATGAVQAEHVVADAAGKLRVDLPPRVVATDATTIVLADNPESGRQTAVVRTSDGVLAWVANDQAVGATSTMVITRSGGRDRAKGTVQWKASSSLGPLVARRGNVVVVKQGTKAVWLSATTGRRLALTGKLSTDEPTYAATRNTVVYLTTAGLSGRDLATGKRLWHRARKGVAVVSLLDWAYVWRKGTRGDVLSARTGKVLVKNKVLPSILYANDAGVLLNADDGYRWVSF
>LT985188.1|SPD87882.1|2793004_2794915_-|Peptidase-M3
MLATLALPASDWLGWLHEHGEGELSAARQSVTELLALPRGDAGMLPLWNDATTALRNAGALANLLASVHPDEAVIERAEALEVEVRSYETDLYLDPDVYAALASVQPGELDDGAARLLTKVLQSFRRSGVDRDEQVRGRVRELEARLTELGQTFSRNIRDGRAITRVPSSALAGLPADYVAAHPAHDDGMVSISTEYPDVHPFLTFATDAAARRSVAHTFFNLAWPVNDPVLAELLSLRHELASLLGYADWPDYDAEVKMIGSGAAIAEFIDTVSAAALPAGEREIAVLRERAVQDGERVIDVSNWRYYTELIKRERYGVDATQVRRYFDFTKVHDGLLEVTARLFGLRFTPVAPSDAHAWHPDVTTYDVSAADHGTPLGRIHLDLHPRERKYNHAANFDMVPGVLDAQLPESVLVCNFPRGLMDHRDVVTLFHEFGHLIHNIVGGQQRWVRFSGVATEWDFVEAPSQLLEEWAWDASVLRTFATDSEGVPIPVELVTAMKAADEFGKGFLARTQMFYAALAYRLHVERPADPTARMLELAAAYSLIDPLPDTHFYAGFGHLEGYTSGYYTYMWSLVIAKDLFSAFDRDDLFDAEVATRYRDQVLRPGGSRDAADLVESLLGRPYNTEAFEAWLNS
>LT985188.1|SPD87883.1|2794986_2795328_+|DGPFAETKE-family-protein
MPEYLIYFNQSWVGDHTQEWFRSRVAPSTAVVEEMKQAGVYVFAAGVEENGPIYTADPTQGEEVAVTDGAYVDQPDHLGGFAIVRVDDDEAAKYWAAKVAEGCGWPQEVRRVW

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Crispr_ID: LT985188_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_13

2962349-2962454

Orphan

Consensus_repeat	Method
TCATCCCGGCGCACGCCGGGATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_13

>merge|LT985188|13|2962349-2962454|CRISPRCasFinder
TCATCCCGGCGCACGCCGGGATCTCCCAACGATGCGGGCGCGCAGGTCTCGACAAGCTCGACCAACGGTCGTTCTACCCCGTCATCCCGGCGCACGCCGGGATCTC

>LT985188|13|13|2962349-2962454|CRISPRCasFinder
TCATCCCGGCGCACGCCGGGATCTC	CCAACGATGCGGGCGCGCAGGTCTCGACAAGCTCGACCAACGGTCGTTCTACCCCG
TCATCCCGGCGCACGCCGGGATCTC

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD88051.1\|2955226_2956507_+\|Integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|366234
LT985188.1\|SPD88052.1\|2956666_2957113_+\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|334464
LT985188.1\|SPD88057.1\|2962657_2964709_+\|Phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
LT985188.1\|SPD88066.1\|2972598_2973222_+\|PTS-system-glucose-like-transporter-subunit-IIB-(fragment)	unknown	unknown	gnl\|CDD\|376324
LT985188.1\|SPD88049.1\|2954117_2954648_-\|single-strand-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236092
LT985188.1\|SPD88055.1\|2959608_2961357_+\|exported-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88059.1\|2965966_2967037_-\|transposase	unknown	unknown	gnl\|CDD\|376564
LT985188.1\|SPD88065.1\|2971927_2972812_+\|membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|273923
LT985188.1\|SPD88047.1\|2953334_2953781_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
LT985188.1\|SPD88061.1\|2968691_2969294_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|274422
LT985188.1\|SPD88058.1\|2964740_2965928_+\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680
LT985188.1\|SPD88056.1\|2961501_2962326_+\|putative-endonuclease-4	unknown	unknown	gnl\|CDD\|179214
LT985188.1\|SPD88062.1\|2969422_2970190_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|223377
LT985188.1\|SPD88064.1\|2971159_2971891_-\|HTH-type-transcriptional-repressor-DasR	unknown	unknown	gnl\|CDD\|225099
LT985188.1\|SPD88060.1\|2967627_2968635_-\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|197318
LT985188.1\|SPD88050.1\|2954728_2955019_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
LT985188.1\|SPD88048.1\|2953795_2954032_-\|ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
LT985188.1\|SPD88053.1\|2957145_2957916_-\|putative-D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|350624
LT985188.1\|SPD88063.1\|2970250_2971093_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
LT985188.1\|SPD88054.1\|2958023_2959373_+\|Major-facilitator-superfamily-MFS_1	unknown	unknown	gnl\|CDD\|349949

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD88051.1\|2955226_2956507_+\|Integrase-core-domain-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.34346e-14
LT985188.1\|SPD88052.1\|2956666_2957113_+\|protein-of-unknown-function	gnl\|CDD\|334464	pfam01272, GreA_GreB, Transcription elongation factor, GreA/GreB, C-term. This domain has an FKBP-like fold.	0.00660792
LT985188.1\|SPD88057.1\|2962657_2964709_+\|Phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
LT985188.1\|SPD88066.1\|2972598_2973222_+\|PTS-system-glucose-like-transporter-subunit-IIB-(fragment)	gnl\|CDD\|376324	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.	6.77021e-45
LT985188.1\|SPD88049.1\|2954117_2954648_-\|single-strand-DNA-binding-protein	gnl\|CDD\|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	4.90136e-94
LT985188.1\|SPD88059.1\|2965966_2967037_-\|transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	8.5279e-16
LT985188.1\|SPD88065.1\|2971927_2972812_+\|membrane-protein-of-unknown-function	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.57682e-35
LT985188.1\|SPD88047.1\|2953334_2953781_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	5.77944e-58
LT985188.1\|SPD88061.1\|2968691_2969294_-\|conserved-protein-of-unknown-function	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	0.000121904
LT985188.1\|SPD88058.1\|2964740_2965928_+\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LT985188.1\|SPD88056.1\|2961501_2962326_+\|putative-endonuclease-4	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	2.81883e-84
LT985188.1\|SPD88062.1\|2969422_2970190_+\|conserved-protein-of-unknown-function	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	2.10906e-83
LT985188.1\|SPD88064.1\|2971159_2971891_-\|HTH-type-transcriptional-repressor-DasR	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.35977e-66
LT985188.1\|SPD88060.1\|2967627_2968635_-\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	3.31858e-15
LT985188.1\|SPD88050.1\|2954728_2955019_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	7.38279e-40
LT985188.1\|SPD88048.1\|2953795_2954032_-\|ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	7.10007e-30
LT985188.1\|SPD88053.1\|2957145_2957916_-\|putative-D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|350624	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins. This L,D-carboxypeptidase family includes LdcB LD-Carboxypeptidase from Streptococcus pneumoniae, Bacillus anthracis, and Bacillus subtilis, and L,D-carboxypeptidase DacB from Streptococcus pneumonia and Lactococcus lactis. These enzymes are active against cell-wall-derived tetrapeptides and synthetic tetrapeptides lacking the sugar moiety but are inactive against tetrapeptides terminating in L-alanine. L,D-carboxypeptidase DacB plays a key role in the remodeling of S. pneumoniae peptidoglycan during cell division. It adopts a zinc-dependent carboxypeptidase fold and acts as an L,D-carboxypeptidase towards the tetrapeptide L-Ala-D-iGln-L-Lys-D-Ala of the peptidoglycan stem. This family also includes vanY D-Ala-D-Ala carboxypeptidase which is vancomycin-inducible and penicillin-resistant. VanY hydrolyzes depsipeptide- and D-alanyl-D-alanine-containing peptidoglycan precursors; it is insensitive to beta-lactams. All these enzymes belong to the MEROPS family M15 subfamily B.	1.9525e-59
LT985188.1\|SPD88063.1\|2970250_2971093_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.81314e-32
LT985188.1\|SPD88054.1\|2958023_2959373_+\|Major-facilitator-superfamily-MFS_1	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.52734e-26

>LT985188.1|SPD88056.1|2961501_2962326_+|putative-endonuclease-4
MPSVTTVRLAAMIVMGAHVDQTDPIVEAKARGAGLSQFFLGDPQGWKGPKVAYAGGAATLKADAESAGVALYVHAPYVLNVASSNNRIRIPSRQHLQKQLTAAAEIGAAGVIVHGGHLNKNEDPQVGYANWFKAVDRLDIAVPLLIENTAGGTNAMTRQLESIDRLWSAIAASANADMVGFCLDTCHAHAAGLELLGLVDRLKSITGRLDLIHANDSRDPFDSGADRHANWGTGHCDPDGVADVLRSADAPVVIETPGGVPEHVLDLTWLADRL
>LT985188.1|SPD88055.1|2959608_2961357_+|exported-protein-of-unknown-function
MRTLIRPFVAAACALLVLLAPVTQARATNPAPPKTLQTPGIDAHLGYIAQKTCTPSAKPGTTALLKALIKTWGGSSWGISRFCSSGGTSEHKEGRALDWHMDSRKAKDRAKVADMVKWMTANNGEVAYRLGVMYIIWNQRIWSIYYQELGWRKMASRGSWTANHKDHVHISLSWDGAMAQTSWWTGQVLTVPQLGPCGKSGRPACLPTIGRSSVKSFAHVTVDPFSPYPSVVPAIGGSARVGLTLKAVAGTWMPDGSTLTYQWLRDGKAITDATGTEYVVAAADVGHAIKLRVSATLGTTTVTKTSDETTDTVKGIFPTPRPVVTGDYVFSSKLSGTPGLGFPEGTSFGYQWQRDGKNIAGATAAEYDLTASDVGHDLRLRVRASLAGYTTDYTYTKAVEVQPLHFTATPEPTIDGILRVGGRLTSVPGDWQPTAVFTYVWYRNGKAIKAATKAGYTLTSSDLGKAITVRVRATLPGYQAVSRLSPPSVKVQSGLTSASAKLSDSTPRVGQAITVTTGTWKPSGVTFGYQWYRNGVVIDGAIEATYTVTAADKGKKLSARITGSLTGYPDASRTTARSSTVS
>LT985188.1|SPD88054.1|2958023_2959373_+|Major-facilitator-superfamily-MFS_1
MSEPAKVTRSALIVWGVAVGAYMLTVFIRSSLSVAGLLAADRFGITAAQLSFFTTLQLLVYAAMQVPAGLAIDRFGPRRALIAGITVLTLAQVGFALALTYPAAIIARVFIGGGDAVIFTSVLRLVSSWFPMMRIPLFTQFTGQLGQIGAMAATVPMTLLLRDVGWTATFATPAALGVVFVLLLLVLVRDTPTRRTQPGPPISRRRVVSTIVEVWARSGTKMGFWVHFSTPFSVMVFALLWGYPFLVQGQATDPIAAGVLLLLATFVSMLTAPLIGQFVAYRPFHRSTLVLASLAVQMVVWAAVLLWPGPAPLWLLVVLAAVIGVGGPVSMIGFDYARTSNPPAQLGGANGIVNQGGFIATVLVVSAVGVILDRLTPPGQPYGREAFGWAMSAQFLLWTIGIVQVARYRVRTRREFHDLDADGYERFRHHDLSVDWNLSVRPPIDRRDD
>LT985188.1|SPD88053.1|2957145_2957916_-|putative-D-alanyl-D-alanine-carboxypeptidase
MLVGVVRRWAISALATGLLAAGCSAVPPQPGSAPSVAAVRPSGQTGSAASPVSSPSAQAPSESLRPSTKPVDDRSGKQLGHPFTVNGMVVVSAKHKVSAAYRPSVGAYGLTPAAGKAFAGLKRAIEKAGLRLYVVSSYRSHAAQQALYASKLASMGRAYTQKYVAVPGTSEHQTGLAVDLRSPGGRGTSFDNSREWRWLRAHAQNYGFVLRYPDGLTKVTGIGFEPWHWRYVGVEQAKAIRALGANMTIEQYLRLA
>LT985188.1|SPD88052.1|2956666_2957113_+|protein-of-unknown-function
MTDKREVRDAVAAAQRAAIAAAERAIAQLHGASELDDETINDPSLIAQSSVDLGTAEALDDTLRPLRDSLAQLEAVDFTPSTTVGPGSLVQVDDEYYFVAISADDVEVNGLTVQSVSPEAPFTQAMLGKSAGDEFTVRGHNYRIDQVG
>LT985188.1|SPD88051.1|2955226_2956507_+|Integrase-core-domain-protein
MGLTMRQRKAVLASQVKAWPKATKAEKSTILDHLVAVNGWHRDHARKMIRAAVAGVDVNRPRRPREPVFRYGPEVIDALAVCWAVLDGPSGKIVRPALPVLVASLVAKGELNATPEVIDALLAMSAATIDRRLRPYRLGLVGNLKGRSLTRPGSLLKSSIPLKTWHEWDDTQPGFIEIDLVGHDGGDNNGHFHYSLDAVDVATGWTETITVKSKGERIVATGLEQLALRFPFAIVGVHSDNGSEFINHHLMSWCNTREITFTRGRPNHSNDQAHIEQKNWTRVRRNVGYYRYDTSRELDLLNQLWPLAAELSNLFTPQQKLKTKTRTGAKVTKTYDTATTPAGRLLRDHPTVLDDQDRRHLDSRITQANPAQLRRDIDLIQRNLLELARRRGTILKAAKRNHVYLSRTKMTRAKRNESTTQPKRAS
>LT985188.1|SPD88050.1|2954728_2955019_-|30S-ribosomal-protein-S6
MRQYEVMVIIDPDVDDRQVNGLLEKPLAGLTKAGGTVDNLDIWGRRRLAYDIRKKSEGIYAVINITAEPADVKELDRQFTLNEQIMRTKVIRPDTR
>LT985188.1|SPD88049.1|2954117_2954648_-|single-strand-DNA-binding-protein
MAGETIITLVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTSEWKDGDAMFLNCSVWRQAAENVAESLTKGMRVVVQGRLKSRSYETREGERRTVFEVEVDEVGPSLRYASAKVSRNQGGGNYSGGGNSGGGGGYSGGNNSGGNDAWSSGGGGNNRSAGNDPWAQAQSDEPPF
>LT985188.1|SPD88048.1|2953795_2954032_-|ribosomal-protein-S18
MAQQRKPVNKKKIAPAKSVRIGHIDYKDTATLRKFISERGKIRARRVTGLSVQEQRKVAIAVKNARELALLPYASTAR
>LT985188.1|SPD88047.1|2953334_2953781_-|50S-ribosomal-protein-L9
MKLILTAPVDHLGIPGEIVEVKDGYGRNYLLPRGFAIKWTRGAEKQIEGIKRARDAREIRSIDHAKEIRTQLEALTVSLPANAGDNGKLFGAVTPADIVLAVKKAGGPAVDKRAVEIAKPIKAVGTHTVGLKLTSGVVAHIDVNVVSA
>LT985188.1|SPD88057.1|2962657_2964709_+|Phosphate-acetyltransferase
MYVAAPEGHTGKSVIALGVLDTVLREVESVGVFRPLVRAGERDGILEMMLAQPGIDQTYDETVGITYDEMRTDFEGALQTIVEKFGRISPRFDAIVVLGSDYADVTSPTELAFNAEIAANLNSSLLLVVSGHDRDAQQIRDAAETALNEFTAHHVQTIGVIANRVDADILDETVEALHGLTDLLVAAIPADRLLVAPTLRAQYEAVGAVHVLGNPDLLDRESQDVVVAAMTLPNILTRLVTEATVLMPSDRSDLLPGLILAHHSGSFPQITGVILTGGYPIPDPVVRLFDGMHLDLPIGMTELGTYTTAKQVFNTEGHFTSSPRKVEVSRRLFSERVDAQALLQALEVEPSKAITPLMFGYQLNELARRDRRRIVMPESSDDRILESASILMQRGVADLTLLGDPVEIKTRASAMGWVLDGVDIVDPNDPELLERFSQEYATLRAHKGVTVEQAREKMKDLSYFGTMMVHLGLADGMVSGAINTTANTIRPSLEFIKTKPGVKVVSGSFLMCMPDRVHVYADCAVNPDPTAEQLADIAISSAETALAFGIEPRVAMLSYSTGSSGSGADVDKVRQATDLVRERRPDLALEGPIQFDAAVDPDVARTKLPNSAVAGKATVFIFPDLNTGNNTYKAVQRSSGAVAIGPILQGLKKAVNDLSRGALVEDIVNTVVITAIQAQSDGN
>LT985188.1|SPD88058.1|2964740_2965928_+|Acetate-kinase
MSTPILLLNAGSSSIKYQVIDADDEAVLASGIIQRIGDESGTIDHTVDGQTHHQTRGFPNHGRALTVLTQMFDEFGPSLASVKAVGHRTVHGGAEFNSTTLIDDEMLEHLRKLSPLAPLHNPPAIAGIAAARRVLPDVPHVAIFDTAFFATLPPEAYTYAVPRELAAEHGIRKYGFHGTSHSYVSRKVADVLGKPYDSFNQIVCHLGNGASISAVDHGVAVEASMGLTPLAGLVMGTRSGDVDPGLHAFLARQVGMSIDDIDTTLNKKSGMLGLCGATDFRDINELVGDGDEAATLALAVYTHRLLSYIGSYIAILGGVEAITFTAGVGENNPLLRAAIAKRLAFLGVTLDDTVNDTRSKEPRVISTPESSIAILVVPTNEELAMARETKAAIGA
>LT985188.1|SPD88059.1|2965966_2967037_-|transposase
MAIVADTYTYVVGVDTHAATHHYAIVETRSGGQITHGKFPTHAAGLLRAVDWISRRTSVDDNPAVDQVLISMEGTGSYGAQAAELLAARGYRVVDAPSPKRARGSGKNDHIDALVAARGALPKDSERLADRRAGHTRAALQILLTARDSMRRDRTRSKNQLTALLRTHNLDIDARKGINKVHISLIAGWRKRPTDTTLARIARTEAHRLATRIHTLDADLDSNEKAINALVRELEPTLLDLPGLGPINAAIVLAVWSHPGRIHDEAGFAKIGGVCPLEISSGNSKDHRLNRTGDRQLNSALNSIANTRMRHDETTKAYVKKRKQQGQTKPRIRRCLKRYIARQIFRHLNTTTLDKT
>LT985188.1|SPD88060.1|2967627_2968635_-|conserved-membrane-protein-of-unknown-function
MTSTHRRNPHRRPRGQAWLVVLGVLVAIPAAFATWLRVLPPSSDELAKVASFIPYGLVMWVPAMVLLGTATIRSWRHHRPGRVVLGVLSLLAAAGLTAAAAWEAPAFIPDRRPVVTPPLTVISLNVAGTADPTAVTQAAAGADVVVFVEASEGWRLSLSERFYQWFPHQAPPMRTMDVGSVIFSRYPLRAGDLPPSNSFQLSAAIVDTPQLGPVRVAAVHPCNPYCGDGLWMREAAHLRSWLAGRDLTIPTVVAGDFNSVDDHSTMRDLYADGFRSAANLAGAGFVRTWPANRRIPPLIGIDHILVDGRLTATEFAAFEVPGTDHLGVQAVIAGT
>LT985188.1|SPD88061.1|2968691_2969294_-|conserved-protein-of-unknown-function
MNNADIMLDAAEAFVALVSELHHDDWDRPGLGVWDVRSLVGHTGRAVVTVLDYLPHTADVAELASAAHYLAVAYGVDPAVHEGVAARGVEAGHELGDEPAEVIETLISRLRVALADTKGDPVITTRFGTIALSDYLDTRLVELVVHTSDLATAVNREAHLPDAAVRRTLDVIADAAMLTGRGVAAVRQLSARDGSAFVLL
>LT985188.1|SPD88062.1|2969422_2970190_+|conserved-protein-of-unknown-function
MPTALITGGTSGIGAAFARALAERGHDLVLVARDAERLRACADEFTERYGVHVEILPADLAVPADVQRVADRLESSERPVDVLVNNAGYGLHVKLLDDKPDEHRRAIDVMCLAVLVLGGAAGRAMKARGHGLIINIASLAAYISQGAYSPIKAYVLAYSEGLANELHGTGVTVTAVNPGWVKTEFHQRAGIKTSSIPDFIWVDSDRVAAEALADADKGRVISVPTKRWKLQKLVARHAPRSTVRWASRMLSRSRQ
>LT985188.1|SPD88063.1|2970250_2971093_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSDDENTSRYSSAPGVAGRFVAQQLLMKPYIWSAVHVHEHGRRNLDGLKPPFIAVANHSSHLDAPLIMGSLPRRLSRNLAAGAAADYFFDKWYTAAATRLFFNAFPVDRKGLRNRKGLAGVLISEGVPLLLFPEGTRSRTGAMKNFTPGHAALSISRNVPVLPIALVGAYAAMPYGTTRPPQGRPDVHVVFGRPLKAAPGEIAHQFAERVYRYVVELHDSTARAYGMPTQADFHRAVALRKAAAEQAQVAEAEAAKNAEPPVEADDAPPRPDTEAEQQES
>LT985188.1|SPD88064.1|2971159_2971891_-|HTH-type-transcriptional-repressor-DasR
MTIDGPGRTTVRVPKYYQVKREILRMIADLAPGTAVPTERELAVRFGTSRTTVRQAIAELVVDGRLARTQGSGTFVAQPKLMVVRPLTSFSQDLQSEGWRPGSVVLDISEVPASVEAAERLQVEPGTMVHRVERLRTSADEPIAHEIALLPGPLPHLAERLAEHSSLYRTLHEAYGISLATAEDTVETVLADPVTADLLRVDTGLPLLLIHRTGWDHDGRTVEWSTGRFRGDRFRFISRQRLS
>LT985188.1|SPD88065.1|2971927_2972812_+|membrane-protein-of-unknown-function
MTSAIGLCQSSLIGLHQSLPRSTPDIQRGAPHVNRSPGKDADQGLRSTHSRIRPTAASRQEPDAAHRPAARRRHSAAPGPARPARPDQDSRHRPLLRGHERGGDAIFGNLALLFAVGVAIGFAKKADGSTALSAVAGYLVMTAVFKSMSPVVLAGVMNSAGTQAQINYSVFGGILIGLITAWLFDKYHDIQLPPYLGFFGGRRFVPIVVSLSTRPSCGLSARPAWSRSATTCRPSSAPRPTRSKATSTTPWWPTRPIRSRPSRPSKRSPRPPRWPRSTCPAPPSWRRSPAVRWR
>LT985188.1|SPD88066.1|2972598_2973222_+|PTS-system-glucose-like-transporter-subunit-IIB-(fragment)
MVEVGNNVQAIFGTQADALKSDINNTLVANPTDPIETVAALEEVAPAAAVATVDVPSTTIVAPVAGRPVALKDVPDATFAQGLVGYGLAIDPPREVVDAVAPVAGSVMKLWPHAYVVLTDDQVGVLVHLGIDTVQLNGEGFTTHVAEGDRVEVGQKVITYDVPAVEATGRNPIIPVLVMERQADGVAFTDAVIGDHVAALDALFSTR

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Crispr_ID: LT985188_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_16

3404146-3404264

Orphan

Consensus_repeat	Method
CGGCTTCGAGATCCCGGGGCAAGCCCGGGATGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_16

>merge|LT985188|16|3404146-3404264|CRISPRCasFinder
CGGCTTCGAGATCCCGGGGCAAGCCCGGGATGACGGGGTGGCCGCGCGTGAGAGGAGCCTGGTGTGACGGGGGCGAGGGGTGCCGGCTTGGAGATCCCGGGGCAAGCCCGGGATGACGG

>LT985188|16|15|3404146-3404264|CRISPRCasFinder
CGGCTTCGAGATCCCGGGGCAAGCCCGGGATGACGG	GGTGGCCGCGCGTGAGAGGAGCCTGGTGTGACGGGGGCGAGGGGTGC
CGGCTTGGAGATCCCGGGGCAAGCCCGGGATGACGG

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD88532.1\|3414777_3416373_+\|putative-exported-protease	unknown	unknown	gnl\|CDD\|312032
LT985188.1\|SPD88522.1\|3401273_3401699_+\|Helicase/secretion-neighborhood-TadE-like-protein	unknown	unknown	gnl\|CDD\|274799
LT985188.1\|SPD88523.1\|3401668_3403969_-\|Helicase,-C-terminal:DEAD/DEAH-box-helicase,-N-terminal	unknown	unknown	gnl\|CDD\|274800
LT985188.1\|SPD88521.1\|3400936_3401272_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88516.1\|3396545_3397628_+\|Helicase/secretion-neighborhood-CpaE-like-protein	unknown	unknown	gnl\|CDD\|274798
LT985188.1\|SPD88526.1\|3407684_3410372_+\|DNA-topoisomerase-1	unknown	unknown	gnl\|CDD\|236048
LT985188.1\|SPD88524.1\|3404370_3405873_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|238625
LT985188.1\|SPD88520.1\|3400687_3400882_+\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|379429
LT985188.1\|SPD88514.1\|3395105_3395630_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377816
LT985188.1\|SPD88519.1\|3399563_3400328_+\|Type-II-secretion-protein-F	unknown	unknown	gnl\|CDD\|366122
LT985188.1\|SPD88515.1\|3395757_3396498_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|369777
LT985188.1\|SPD88529.1\|3412449_3413589_+\|DNA-polymerase-3-subunit-delta	unknown	unknown	gnl\|CDD\|236134
LT985188.1\|SPD88530.1\|3413837_3414107_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88528.1\|3411817_3412453_+\|Thymidylate-kinase	unknown	unknown	gnl\|CDD\|234814
LT985188.1\|SPD88527.1\|3410378_3411821_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88531.1\|3413942_3414740_+\|membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|225168
LT985188.1\|SPD88517.1\|3397624_3398779_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|200328
LT985188.1\|SPD88533.1\|3416858_3417935_-\|O-ureido-L-serine-synthase	unknown	unknown	gnl\|CDD\|223110
LT985188.1\|SPD88525.1\|3405891_3407379_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|368316
LT985188.1\|SPD88518.1\|3398766_3399567_+\|Tight-adherence-protein-B	unknown	unknown	gnl\|CDD\|227300

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD88532.1\|3414777_3416373_+\|putative-exported-protease	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	8.81244e-26
LT985188.1\|SPD88522.1\|3401273_3401699_+\|Helicase/secretion-neighborhood-TadE-like-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	1.26726e-06
LT985188.1\|SPD88523.1\|3401668_3403969_-\|Helicase,-C-terminal:DEAD/DEAH-box-helicase,-N-terminal	gnl\|CDD\|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	0
LT985188.1\|SPD88516.1\|3396545_3397628_+\|Helicase/secretion-neighborhood-CpaE-like-protein	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	6.84751e-54
LT985188.1\|SPD88526.1\|3407684_3410372_+\|DNA-topoisomerase-1	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
LT985188.1\|SPD88524.1\|3404370_3405873_-\|conserved-protein-of-unknown-function	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	2.06082e-87
LT985188.1\|SPD88519.1\|3399563_3400328_+\|Type-II-secretion-protein-F	gnl\|CDD\|366122	pfam00482, T2SSF, Type II secretion system (T2SS), protein F. The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the Type II secretion system, as well as the Type 4 pili and the archaeal flagella. This domain seems to show some similarity to PF00664 but this may just be due to similarities in the TM helices (personal obs: C Yeats).	1.8406e-06
LT985188.1\|SPD88520.1\|3400687_3400882_+\|protein-of-unknown-function	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	9.085e-08
LT985188.1\|SPD88515.1\|3395757_3396498_-\|conserved-protein-of-unknown-function	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.16624e-07
LT985188.1\|SPD88529.1\|3412449_3413589_+\|DNA-polymerase-3-subunit-delta	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	1.85992e-178
LT985188.1\|SPD88528.1\|3411817_3412453_+\|Thymidylate-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	7.96245e-79
LT985188.1\|SPD88514.1\|3395105_3395630_-\|conserved-protein-of-unknown-function	gnl\|CDD\|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	1.1227e-14
LT985188.1\|SPD88531.1\|3413942_3414740_+\|membrane-protein-of-unknown-function	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.21319e-12
LT985188.1\|SPD88517.1\|3397624_3398779_+\|conserved-protein-of-unknown-function	gnl\|CDD\|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	8.60032e-143
LT985188.1\|SPD88533.1\|3416858_3417935_-\|O-ureido-L-serine-synthase	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	1.96488e-127
LT985188.1\|SPD88525.1\|3405891_3407379_+\|conserved-protein-of-unknown-function	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	4.03324e-21
LT985188.1\|SPD88518.1\|3398766_3399567_+\|Tight-adherence-protein-B	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	5.26999e-19

>LT985188.1|SPD88523.1|3401668_3403969_-|Helicase,-C-terminal:DEAD/DEAH-box-helicase,-N-terminal
MAVPEWIANAPEVRHVHHRPARLGLTAEVPAWVSPGARAALAEQGITALWQHQRVAASAAFEGRHVAISTSTASGKSLAYLLPIYAATAEGTIGHDVAVHRWAPATRAHTALYLAPTKALAHDQARRAREFGGQSWRLTTLDGDSEAEERRFARDFATFVLTNPDMLHRSVLPGHDRWQGFLRSLRYVVIDEAHRYRGVFGAHVASVLRRLRRLCRHYGADPVFISASGTIAEPARHLERLAGVYDALAVDRDSCTRPALDFVVWQAAADPHREAAAMLTRLVDNGYQALAFTTSRIQAELVADQARRHCIDPDGIASYRAGYLANDRRELEAALSTGRLRGVACTNALELGVDITGMDAVLSIGFPGSLAALWQQAGRAGRDGRDAFAMLIARPDPLDTWLCDHPEALFESPIEATVLHPQQPAVLSAHLAAAAQELALTSGDEQFFGPTMLPILERLADRGVLRRRGDAWYWTSQQRAVDSIDLRSIAGTGVEIVQSATGRVIGQVDATAADRTVHEGAVYLHQGEQWLVEQYDLAAGVALCRQQRAEWFTQAQGTTDVRIIGTDRQRTLGDATLFAGTIELTSQITGYLRRDSVTGAVWDSTPLDLPRRTFRTRALWWTLPSPDSKHAHGLDERDLAGGLHAAEHAAIGLLPGFAPCDRGDIGGLSTVHHTDTGAPTVFVHDGLPGGSGFADEGYRVAERWLAATLQLLEACGCDKGCPRCVVSPACGSGNHPLDRVAAIAVLRPMVAGSTEAPHGTPVTLPA
>LT985188.1|SPD88522.1|3401273_3401699_+|Helicase/secretion-neighborhood-TadE-like-protein
MVVDEGTNRHVGCGRRSRPPRAGERGVGTVLAVAIVMALVTVAAVGLLGLTYAATARSVRQAADLVAVSGAQAQAQGSDACAESRRVAALNQVEVSGCEVTGDLIDFVVEVNVRRSVGWRLPGLPEGVAAVAYAGSVTGVP
>LT985188.1|SPD88521.1|3400936_3401272_+|protein-of-unknown-function
MKSERGMVSFEVAFGVMLAAVVALGLCYLLALVVQLGELQATAGEVARQRARDDTAAAARAERDAPVGTRVRVSNSGRDVVVIAELNSQPWGLWIPAMPLSARAVVAREGA
>LT985188.1|SPD88520.1|3400687_3400882_+|protein-of-unknown-function
MFNQIVAVTRSERGMTTAEYALGTIAVVCIVGVVISFVTGGAFSGEVADTVSQIIDWIQSFIKR
>LT985188.1|SPD88519.1|3399563_3400328_+|Type-II-secretion-protein-F
MSSAQLVLLAAFAAAVAVYLIVAPGRHHTLVKVVDSGHPSSGLRGWLTPVEGAPSTVTRAAAAAIVGCVVFGVQGEASRAVLLGGLLGIVVFVGLGRLGSPARRREELAVVSSLPAVCTLLAVCLEAGLPLRNAVAAVAQGLRGPVGEVLARLDAAVGLGTPEQDAWHELGRRHPAFESLARELGHAAGSGVALAPLLRQHAREAQRTLHAAAQARARRAGVSSVMPLMVCFLPAFLLIGVVPIIAGAALHLFG
>LT985188.1|SPD88518.1|3398766_3399567_+|Tight-adherence-protein-B
MAALSGLLLVAAVALWRPLRPWRRVLVRARATRPERPVRLIPVLLIGVLFITVAGWLLAGDRGAVLSGVAAACSATAVWTITQAHRAHQRNRAADEVARGSSELAALLRAGHPPARALGLVAESAPCFAESAAHFRIGGDLTEALQRVGDRPGYEGLCGLAATWRIAQRTGASMTTFLDDLATRLIDERELRRSVGTELAAARMTGRLLGFLPLVGLGMGYLIGGDPVAFLISSVGGLWCLALGVALAVAGVVWSEKLADRAGQLR
>LT985188.1|SPD88517.1|3397624_3398779_+|conserved-protein-of-unknown-function
MTSLPLEDIRSVLGRTGADLTPGSVAGALRGLGLLVSENTVRDTVDALRRESAGAGPLEQLLGLRGVTDVLVNGPQHVYIDRGGGLEAVESPFVDDDDVRRLAVRLAAVVGRRLDEGAPYVDARLPDGTRVHALLGVLTDVGTCLSLRVPARTSLTLDDWVTNRTMHPEAARLLQALVAARGAFLISGGTGSGKTTLLATLLGLVDRSHRIVVVEDSRELAPAHPHVLRLEARPANAEGAGAVDLATLVRQALRMRPDRLVVGEVRGAELADLLAALNTGHEGGCGTVHANSAADVPARLEALAALGGLPRAALHAQAAAALDVLVHITRLPDGRRWVQELSLLQWGEAAALCRPVPGWEFPPCGDPVQHPGAAELAKALRWPR
>LT985188.1|SPD88516.1|3396545_3397628_+|Helicase/secretion-neighborhood-CpaE-like-protein
MSTITFTPISLNTRAVLVFKLIGVDDVMVVSANAEVRDLVTTAAVALGQRPALCDPSELGGRWQTASTVFVGVDAAAEVAALALPRRDRVFLVGRDVGAAALWSMPLGAEVIVLPEGRAWLSTVLAGPGSQGTGRVTVLLGGSGGVGTSTLAASLAWTASKSGSSVALVDADRLGGGIDLLLGAEQTTGWRWPRFTAAEGVLGDLREFLPVVDGVAVVSMARGPDLDLAREPLTAVLGSLQRTYDHVVIDPGRWVGAAARESVRHASRTLVVVGGSVRGLAAAGQALRAFEPSEAELVVRQLPPARLPDDVAEDVLGLPVAGRLRHDPRLAAAAERGERPPLGRRRGGLGALCDRLLEAA
>LT985188.1|SPD88515.1|3395757_3396498_-|conserved-protein-of-unknown-function
MTTSSLPNALDWLVEGSNGPTLVIGRSASPFAAGLAGQPLTLVDRDRAGVSAMLRRAPSAIPLVAAAEALPLAPCTFERVLLAQSFHQLAPGLALSEFARVLRPGGRLGISYTVRDDSVPWVKRLVALVRQVDAQAMSGDYGTDSLQALDDSAYFPTVETRAFRRWVPIDRDGLLSMVERTPVAQQLDDATRDALLADVAALYENAARPPEPLLLPYRVLCWRARVDHTELTAPLDLPDDGLQIQL
>LT985188.1|SPD88514.1|3395105_3395630_-|conserved-protein-of-unknown-function
MANQLDIADAIKAIQADVTTIVRGEVELAKAELVPQVKSAGIGAGLFGAAGYFGINGLALVFLGLSALVANWFATSLGWAPFLAACMGLVIMAVVLFLIAGVLALVGKNKVAAAKGPQATIKQAEDSVDAVKDALARGQSQAEAEVEARKAARKAAPSITAGTSTRPTFVPPGS
>LT985188.1|SPD88524.1|3404370_3405873_-|conserved-protein-of-unknown-function
MTGSVLLRRVRLVDLDGSKGSAEPIDVAIRAGVIEAIGPVLPSAELEVVEGEGRWAIPGLWDAHVHAAQWVRTGRMLPLGSATRAEGVLAAVAGAVENVASGRTLLGFGYRSAGWPRPGTVAELDAVSRGRAVALVSGDAHNGWLNSAAFDLLGVRRRSGPVSENEWFELLRRLDELPGAAPEPSDFVEPMAALAAIGVTGLIDFEFENSFLDWPARFAAGADAVRVRAGVYPHQLDEVIGLGLRTGDALPGTGGLATMGPLKIISDGSLGSRTAWTREPYSDRPATPEHPCGQSNYAFDELRELLSRAKDAGLQVALHAIGDRANEVAIDAFAASGARGSIEHAQLITPSDVRRLAQLGVRASVQPAHLLDDRDLTERVWGERASNAFPLRTMLNAGVELALGSDAPVAALDPWLAIATAVHRSGDERPGWHAEQSLTAPEALAASVDGRRLVTGGVGDVVLLDHDPLALSDDSAAAAASLRATRAALTVCAGRVTHAA
>LT985188.1|SPD88525.1|3405891_3407379_+|conserved-protein-of-unknown-function
MLDPDLARDLADRLRDAGYTYDGVAARLGPEGLDGLARNSTVPSEAALHGARDPQATLIRAFALQQVVEADALKAVLGPAADAPELVELDGARARAAVELRPYDFEHAGGTHSGWLASDLTPTLDGRLARPRADFVLGLSPASITLAQLTMRMPVDRALDLGAGCGVQALHLATHAAHVVATDLNPRACAMSQLTAALNDVQVDVRQGSLYEPVDADTFDLIVTNPPYVMSPPTGRRLVYREGDHTADGLMRAVVTGAPTHLNPGGALQVLGNWAITADQPWQDRLADWIAPTGCDAMVLQRERLDPYEYIELWLADAGLTGTPEYAPRYAEWAAYFTQLGIVGVGMGWLTLYHEQRDDPSLTFEEWPHQVHQPVGPAFAAHPAALTAARQPDAALLAATLVVADDVTQETLGRPGAAEPDHIVLRRSTGFGRAAEVDTGLAAVVGACDGDLPVGVLIGAVADLLDVDADALIPDLLPRLRRLIEQGYLVPTVGL
>LT985188.1|SPD88526.1|3407684_3410372_+|DNA-topoisomerase-1
MATAGFKALVIVESPAKATKIASFLGNSYVVESSRGHVADLPTGASEVPAKYKGEKWARTGVNVDNDFEPLYVVQADKKGTIRDLKAKLATADELLLATDEDREGEAIAWHLLQQLKPKVPVRRMVFHEITPQAIAEAVANPRELDIDLVDAQETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRLVVDRERERIAFRAASYAGIEAVLNAGEDAEPSTFGATLQQVSDLRVASGRDFDAQGNLTGKGLLHLSSDQAETLAEALKTAGYAVASVEAKPYTRRPYAPFRTTTLQQDAGRKLGFTAERTMRVAQDLYERGFITYMRTDSVTLSATAINAARAQVKQLFGGQYLPDQPRIYTSKVKNAQEAHEAIRPAGENFATPTQTGLAGDGFRLYELIWKRTLASQMKDAVGETVTVRIGATLPQRLAITDATTGEIVETGRCTFGASGRTITFAGFLKAYVVGVDDDETSDDAQARLPQLVAGAPLTADEVKAVAHDTRPPARYTEPSLVAKLEELEIGRPSTYASIIRTITSRDYVFKKGSALVPTWLAFAVTRLLEEHFPKLVDYTFTAALEETLDDIANGQAARLQVLNDFYFGPDGSSHEGLHTLVNELGEIDARELSTHPLGESGINVRVGRYGTYVEDAAGRRANVPEDLPPDELTADYAEQLLEQPVGEERELGTDPDTGLPVVAKNGRYGPYVTEVLPEDSPKGAKPRTGSLFASMSLDTVTLADALTLMSLPRVVGTAADGVEITAQNGRYGPYLKKGTDSRSLTSEEQIFTITLPEAEAIYAQPKTRGGARAAAAPLKELGNDPATGKPMLIKDGRFGAYVTDGEVNATLRKEDSVEAMTADRAAELLAEKRAKGPAPKRSTRRTATRSTSKRAPAKRK
>LT985188.1|SPD88527.1|3410378_3411821_+|conserved-protein-of-unknown-function
MPGGEVLRFDLPPTAAVANLTGAATGIRRMVARPPAESTATVIDTADHRLLDWGIELSRIVETGQWVLRAPGWVPPLQAETVSPQAEDELPPELADVLVPFRRGGILGPKLKVETLRRRFSLAGDDGVPFGELTDERHRVLSHAGQVTSYRDVTLRIPAPSVDQVQAITAAFVAAGGTVVDGFATLASRLGLAHQSQRRSALSARAPIEEFVAAQFESRWRRLLLADLAARTGSGDDAALREGVQAVGVELAGLEPLLQSAWVHEAEQRAATAAESTRPLQHTVRWLRLLDVVAQGATAPPLGPVAGRITGPVLAQELEALVQTVLDQCRTLAPYSDDARWVRARQVTARALALSTLARDVFGKPAKQLRRCLEPVVDALSGTIRPDPASLTRDLHNLSTAEVFEAGRAYERTVLTVDYERQNFVRDWPAWGERVRARMIRPRVPHVRPTPVEPLVEPVETHDPPVEPVETPEPPQRGAR
>LT985188.1|SPD88528.1|3411817_3412453_+|Thymidylate-kinase
MTGLFVVFEGGDGVGKSTQTKLLAEWATGQGLDVRVTFEPGDTAAGQLIRRIVLDPATGELDPRAEALLYAADKAHHLYEVVRPALARGELVICDRYVDSMLAYQGAGRVLDLDEVAGIARWATDGLVPDLTVLLDLEPEHAVGAIAEPDRLEQAGADFHQRARRFFLDLAASDPSRYLVLPARDPIERIAEQVRHRVQQELSAQAGKIDP
>LT985188.1|SPD88529.1|3412449_3413589_+|DNA-polymerase-3-subunit-delta
MSVWADLVGQQRVVDVLRRAVAGGPHAMSHAWLITGPPGSGRSNAARSFAAALQCENGGCGTCNNCRTALSGAHPDVTLVRTEQLSIGVDEVRELVRRAAMSPRLGRYQVLVVEDADRVTERGADALLKSIEEPAPRTVWLLCAPTPDDVVVTIRSRCRAVHLSTPSNAAVAELLVRRDGVPSELAAFAARVAQGHIGRARMLARHEPARIRRAELLKLPSRLVSLPDCLTAAANLVEAAGEEAAATTTELDARERAELSEALGFGAKGARPRNAQAALRELEDQQKARAKRLQRDALDRVLTELTTYYRDVFCVQSGATKDLINAELRPEIEAMAARDAPERTLRRIDSILECRTALEGNVAPLLAMESLMIGLAVSV
>LT985188.1|SPD88530.1|3413837_3414107_-|protein-of-unknown-function
MLRGRVGLDGSRNGGLHPGALVGTVVEARRLGQPRRARLFATLVHGLLVFNGVGHGSPPHGLSSIVPVGLCPAADRHAALLILAESARS
>LT985188.1|SPD88531.1|3413942_3414740_+|membrane-protein-of-unknown-function
MTHTVEDEQTMHQGGEQSRTPRLPEPPSFDDSADERTRVQPAVAAAVEADPPTQQQPVVPDDAIFRAQSVSTPSELSPEEAKLAAERAARREARTQALAQPDVRTIATPEPVVVTRRTTDRFIGAFALFGLRLVVAAIMAIRGLEIVTNLPAAEALFATTIIPEPRITAMVTGGAALAIAVALVFGLLTRVAGLGVLLIASGALAFVQWGFWSPFVPGRSGFIGELELLLAAVGLVFLCVGGGGFSLDRSFRKSREKDRLLDQGL
>LT985188.1|SPD88532.1|3414777_3416373_+|putative-exported-protease
MRVRTLGRWAVATLALALLAACVPQQTPSPSAPAPSPSATAAVPSGEVIDVSLVPNLEVDRPTSTDSNAQPAGFEDAPKGGLAGYTKQQLDWSTCGGKYECAEVLAPLDYANPDDQAITLALAKKAATKSPKLGTLFVNPGGPGGSGRNLVTYFASTGLEQYDIVGWDPRGTNASTPVKCFDDEETQAFTELDSSPDDPAETEALIVGTWQFAQSCREHSGALLDHISTVDTVRDLDLLRQLVGDEKLTFLGYSYGTQIGSYYADVFPQQVGRLVLDAAVDITDDDSVIQAMGFDLALGNFAAWCARQKCSLGSSKQAVLKTITDFFDELDATPLKVGDRPLTQTIAVSGVAAYLYGGIPAWRTLSNDLKSALAGDGTRLLKASDRLNDRNEDGTFGSLFYSFPAIGCADGYDKGVVEAEQRWVIDQQKAPIFGTYFGPGYTCPLWTARSTIQFKPTGSGAAPIVVVGATGDPATPYQSAVTMAKQLESGVLVTYAGEGHGTFGGKSTCVDRLVIDYLVNGTVPTDGVKCQ
>LT985188.1|SPD88533.1|3416858_3417935_-|O-ureido-L-serine-synthase
MASTTTRTTQGRGRLYESILETVGDTPAVRVNNIGVDGVTIYVKAEFFNPLSSVKDRLAISVIEDAERRGTLAPGQTVVEATSGNTGIGLAMVCAQKGYPLVVTMADSFSIERRRLMRMLGAKVVLTPRAQKGFGMYQKAVELAEANGWFLAHQFETEANADIHEATTAREIVNDFAGSRLDCFVTGYGTGGTVTGIGRVLRKERPEVRIVLSEPANAQLLGSGTPQERTPEGAPASSHPAFEPHPIQGWTPDFIPKVLQEAIDEHLFDEVVPVAGAEGMRWARELAAKEGIFTGVSGGSTFAVARQVAEQAEPGSVILAMLPDTGERYLSAPLFDDIPADMTDDELAISLSTPGYHL

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Crispr_ID: LT985188_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_17

3413671-3413777

Orphan

Consensus_repeat	Method
GTCGGTGGTCGAGCCTGTCGAGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_17

>merge|LT985188|17|3413671-3413777|CRISPRCasFinder
GTCGGTGGTCGAGCCTGTCGAGACCACTGTTGCGGCCACGGTTTCGACAAGCTCAACCAACGGGCCCGCTGCAGTGCTCTCAGTCGTTGGTCGAGCCTGTCGAGACC

>LT985188|17|16|3413671-3413777|CRISPRCasFinder
GTCGGTGGTCGAGCCTGTCGAGACC	ACTGTTGCGGCCACGGTTTCGACAAGCTCAACCAACGGGCCCGCTGCAGTGCTCTCA
GTCGTTGGTCGAGCCTGTCGAGACC

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD88532.1\|3414777_3416373_+\|putative-exported-protease	unknown	unknown	gnl\|CDD\|312032
LT985188.1\|SPD88522.1\|3401273_3401699_+\|Helicase/secretion-neighborhood-TadE-like-protein	unknown	unknown	gnl\|CDD\|274799
LT985188.1\|SPD88523.1\|3401668_3403969_-\|Helicase,-C-terminal:DEAD/DEAH-box-helicase,-N-terminal	unknown	unknown	gnl\|CDD\|274800
LT985188.1\|SPD88539.1\|3422482_3422716_-\|XRE-family-transcriptional-regulator-(fragment)	unknown	unknown	gnl\|CDD\|375319
LT985188.1\|SPD88521.1\|3400936_3401272_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88537.1\|3420704_3421130_-\|Cupin-domain-protein	unknown	unknown	gnl\|CDD\|380361
LT985188.1\|SPD88526.1\|3407684_3410372_+\|DNA-topoisomerase-1	unknown	unknown	gnl\|CDD\|236048
LT985188.1\|SPD88524.1\|3404370_3405873_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|238625
LT985188.1\|SPD88520.1\|3400687_3400882_+\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|379429
LT985188.1\|SPD88535.1\|3418185_3419166_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|176247
LT985188.1\|SPD88538.1\|3421153_3421666_-\|Predicted-arabinose-efflux-permease,-MFS-family-(fragment)	unknown	unknown	gnl\|CDD\|341026
LT985188.1\|SPD88529.1\|3412449_3413589_+\|DNA-polymerase-3-subunit-delta	unknown	unknown	gnl\|CDD\|236134
LT985188.1\|SPD88530.1\|3413837_3414107_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88528.1\|3411817_3412453_+\|Thymidylate-kinase	unknown	unknown	gnl\|CDD\|234814
LT985188.1\|SPD88536.1\|3419255_3420326_-\|transposase	unknown	unknown	gnl\|CDD\|376564
LT985188.1\|SPD88527.1\|3410378_3411821_+\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88531.1\|3413942_3414740_+\|membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|225168
LT985188.1\|SPD88534.1\|3418144_3418267_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|176247
LT985188.1\|SPD88525.1\|3405891_3407379_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|368316
LT985188.1\|SPD88533.1\|3416858_3417935_-\|O-ureido-L-serine-synthase	unknown	unknown	gnl\|CDD\|223110

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD88532.1\|3414777_3416373_+\|putative-exported-protease	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	8.81244e-26
LT985188.1\|SPD88522.1\|3401273_3401699_+\|Helicase/secretion-neighborhood-TadE-like-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	1.26726e-06
LT985188.1\|SPD88523.1\|3401668_3403969_-\|Helicase,-C-terminal:DEAD/DEAH-box-helicase,-N-terminal	gnl\|CDD\|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	0
LT985188.1\|SPD88539.1\|3422482_3422716_-\|XRE-family-transcriptional-regulator-(fragment)	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.93664e-15
LT985188.1\|SPD88537.1\|3420704_3421130_-\|Cupin-domain-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.13314e-40
LT985188.1\|SPD88526.1\|3407684_3410372_+\|DNA-topoisomerase-1	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
LT985188.1\|SPD88524.1\|3404370_3405873_-\|conserved-protein-of-unknown-function	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	2.06082e-87
LT985188.1\|SPD88520.1\|3400687_3400882_+\|protein-of-unknown-function	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	9.085e-08
LT985188.1\|SPD88535.1\|3418185_3419166_-\|IMP-dehydrogenase	gnl\|CDD\|176247	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	1.18602e-135
LT985188.1\|SPD88538.1\|3421153_3421666_-\|Predicted-arabinose-efflux-permease,-MFS-family-(fragment)	gnl\|CDD\|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.000418755
LT985188.1\|SPD88529.1\|3412449_3413589_+\|DNA-polymerase-3-subunit-delta	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	1.85992e-178
LT985188.1\|SPD88528.1\|3411817_3412453_+\|Thymidylate-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	7.96245e-79
LT985188.1\|SPD88536.1\|3419255_3420326_-\|transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	8.5279e-16
LT985188.1\|SPD88531.1\|3413942_3414740_+\|membrane-protein-of-unknown-function	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.21319e-12
LT985188.1\|SPD88534.1\|3418144_3418267_-\|protein-of-unknown-function	gnl\|CDD\|176247	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	2.32716e-16
LT985188.1\|SPD88525.1\|3405891_3407379_+\|conserved-protein-of-unknown-function	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	4.03324e-21
LT985188.1\|SPD88533.1\|3416858_3417935_-\|O-ureido-L-serine-synthase	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	1.96488e-127

>LT985188.1|SPD88529.1|3412449_3413589_+|DNA-polymerase-3-subunit-delta
MSVWADLVGQQRVVDVLRRAVAGGPHAMSHAWLITGPPGSGRSNAARSFAAALQCENGGCGTCNNCRTALSGAHPDVTLVRTEQLSIGVDEVRELVRRAAMSPRLGRYQVLVVEDADRVTERGADALLKSIEEPAPRTVWLLCAPTPDDVVVTIRSRCRAVHLSTPSNAAVAELLVRRDGVPSELAAFAARVAQGHIGRARMLARHEPARIRRAELLKLPSRLVSLPDCLTAAANLVEAAGEEAAATTTELDARERAELSEALGFGAKGARPRNAQAALRELEDQQKARAKRLQRDALDRVLTELTTYYRDVFCVQSGATKDLINAELRPEIEAMAARDAPERTLRRIDSILECRTALEGNVAPLLAMESLMIGLAVSV
>LT985188.1|SPD88528.1|3411817_3412453_+|Thymidylate-kinase
MTGLFVVFEGGDGVGKSTQTKLLAEWATGQGLDVRVTFEPGDTAAGQLIRRIVLDPATGELDPRAEALLYAADKAHHLYEVVRPALARGELVICDRYVDSMLAYQGAGRVLDLDEVAGIARWATDGLVPDLTVLLDLEPEHAVGAIAEPDRLEQAGADFHQRARRFFLDLAASDPSRYLVLPARDPIERIAEQVRHRVQQELSAQAGKIDP
>LT985188.1|SPD88527.1|3410378_3411821_+|conserved-protein-of-unknown-function
MPGGEVLRFDLPPTAAVANLTGAATGIRRMVARPPAESTATVIDTADHRLLDWGIELSRIVETGQWVLRAPGWVPPLQAETVSPQAEDELPPELADVLVPFRRGGILGPKLKVETLRRRFSLAGDDGVPFGELTDERHRVLSHAGQVTSYRDVTLRIPAPSVDQVQAITAAFVAAGGTVVDGFATLASRLGLAHQSQRRSALSARAPIEEFVAAQFESRWRRLLLADLAARTGSGDDAALREGVQAVGVELAGLEPLLQSAWVHEAEQRAATAAESTRPLQHTVRWLRLLDVVAQGATAPPLGPVAGRITGPVLAQELEALVQTVLDQCRTLAPYSDDARWVRARQVTARALALSTLARDVFGKPAKQLRRCLEPVVDALSGTIRPDPASLTRDLHNLSTAEVFEAGRAYERTVLTVDYERQNFVRDWPAWGERVRARMIRPRVPHVRPTPVEPLVEPVETHDPPVEPVETPEPPQRGAR
>LT985188.1|SPD88526.1|3407684_3410372_+|DNA-topoisomerase-1
MATAGFKALVIVESPAKATKIASFLGNSYVVESSRGHVADLPTGASEVPAKYKGEKWARTGVNVDNDFEPLYVVQADKKGTIRDLKAKLATADELLLATDEDREGEAIAWHLLQQLKPKVPVRRMVFHEITPQAIAEAVANPRELDIDLVDAQETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRLVVDRERERIAFRAASYAGIEAVLNAGEDAEPSTFGATLQQVSDLRVASGRDFDAQGNLTGKGLLHLSSDQAETLAEALKTAGYAVASVEAKPYTRRPYAPFRTTTLQQDAGRKLGFTAERTMRVAQDLYERGFITYMRTDSVTLSATAINAARAQVKQLFGGQYLPDQPRIYTSKVKNAQEAHEAIRPAGENFATPTQTGLAGDGFRLYELIWKRTLASQMKDAVGETVTVRIGATLPQRLAITDATTGEIVETGRCTFGASGRTITFAGFLKAYVVGVDDDETSDDAQARLPQLVAGAPLTADEVKAVAHDTRPPARYTEPSLVAKLEELEIGRPSTYASIIRTITSRDYVFKKGSALVPTWLAFAVTRLLEEHFPKLVDYTFTAALEETLDDIANGQAARLQVLNDFYFGPDGSSHEGLHTLVNELGEIDARELSTHPLGESGINVRVGRYGTYVEDAAGRRANVPEDLPPDELTADYAEQLLEQPVGEERELGTDPDTGLPVVAKNGRYGPYVTEVLPEDSPKGAKPRTGSLFASMSLDTVTLADALTLMSLPRVVGTAADGVEITAQNGRYGPYLKKGTDSRSLTSEEQIFTITLPEAEAIYAQPKTRGGARAAAAPLKELGNDPATGKPMLIKDGRFGAYVTDGEVNATLRKEDSVEAMTADRAAELLAEKRAKGPAPKRSTRRTATRSTSKRAPAKRK
>LT985188.1|SPD88525.1|3405891_3407379_+|conserved-protein-of-unknown-function
MLDPDLARDLADRLRDAGYTYDGVAARLGPEGLDGLARNSTVPSEAALHGARDPQATLIRAFALQQVVEADALKAVLGPAADAPELVELDGARARAAVELRPYDFEHAGGTHSGWLASDLTPTLDGRLARPRADFVLGLSPASITLAQLTMRMPVDRALDLGAGCGVQALHLATHAAHVVATDLNPRACAMSQLTAALNDVQVDVRQGSLYEPVDADTFDLIVTNPPYVMSPPTGRRLVYREGDHTADGLMRAVVTGAPTHLNPGGALQVLGNWAITADQPWQDRLADWIAPTGCDAMVLQRERLDPYEYIELWLADAGLTGTPEYAPRYAEWAAYFTQLGIVGVGMGWLTLYHEQRDDPSLTFEEWPHQVHQPVGPAFAAHPAALTAARQPDAALLAATLVVADDVTQETLGRPGAAEPDHIVLRRSTGFGRAAEVDTGLAAVVGACDGDLPVGVLIGAVADLLDVDADALIPDLLPRLRRLIEQGYLVPTVGL
>LT985188.1|SPD88524.1|3404370_3405873_-|conserved-protein-of-unknown-function
MTGSVLLRRVRLVDLDGSKGSAEPIDVAIRAGVIEAIGPVLPSAELEVVEGEGRWAIPGLWDAHVHAAQWVRTGRMLPLGSATRAEGVLAAVAGAVENVASGRTLLGFGYRSAGWPRPGTVAELDAVSRGRAVALVSGDAHNGWLNSAAFDLLGVRRRSGPVSENEWFELLRRLDELPGAAPEPSDFVEPMAALAAIGVTGLIDFEFENSFLDWPARFAAGADAVRVRAGVYPHQLDEVIGLGLRTGDALPGTGGLATMGPLKIISDGSLGSRTAWTREPYSDRPATPEHPCGQSNYAFDELRELLSRAKDAGLQVALHAIGDRANEVAIDAFAASGARGSIEHAQLITPSDVRRLAQLGVRASVQPAHLLDDRDLTERVWGERASNAFPLRTMLNAGVELALGSDAPVAALDPWLAIATAVHRSGDERPGWHAEQSLTAPEALAASVDGRRLVTGGVGDVVLLDHDPLALSDDSAAAAASLRATRAALTVCAGRVTHAA
>LT985188.1|SPD88523.1|3401668_3403969_-|Helicase,-C-terminal:DEAD/DEAH-box-helicase,-N-terminal
MAVPEWIANAPEVRHVHHRPARLGLTAEVPAWVSPGARAALAEQGITALWQHQRVAASAAFEGRHVAISTSTASGKSLAYLLPIYAATAEGTIGHDVAVHRWAPATRAHTALYLAPTKALAHDQARRAREFGGQSWRLTTLDGDSEAEERRFARDFATFVLTNPDMLHRSVLPGHDRWQGFLRSLRYVVIDEAHRYRGVFGAHVASVLRRLRRLCRHYGADPVFISASGTIAEPARHLERLAGVYDALAVDRDSCTRPALDFVVWQAAADPHREAAAMLTRLVDNGYQALAFTTSRIQAELVADQARRHCIDPDGIASYRAGYLANDRRELEAALSTGRLRGVACTNALELGVDITGMDAVLSIGFPGSLAALWQQAGRAGRDGRDAFAMLIARPDPLDTWLCDHPEALFESPIEATVLHPQQPAVLSAHLAAAAQELALTSGDEQFFGPTMLPILERLADRGVLRRRGDAWYWTSQQRAVDSIDLRSIAGTGVEIVQSATGRVIGQVDATAADRTVHEGAVYLHQGEQWLVEQYDLAAGVALCRQQRAEWFTQAQGTTDVRIIGTDRQRTLGDATLFAGTIELTSQITGYLRRDSVTGAVWDSTPLDLPRRTFRTRALWWTLPSPDSKHAHGLDERDLAGGLHAAEHAAIGLLPGFAPCDRGDIGGLSTVHHTDTGAPTVFVHDGLPGGSGFADEGYRVAERWLAATLQLLEACGCDKGCPRCVVSPACGSGNHPLDRVAAIAVLRPMVAGSTEAPHGTPVTLPA
>LT985188.1|SPD88522.1|3401273_3401699_+|Helicase/secretion-neighborhood-TadE-like-protein
MVVDEGTNRHVGCGRRSRPPRAGERGVGTVLAVAIVMALVTVAAVGLLGLTYAATARSVRQAADLVAVSGAQAQAQGSDACAESRRVAALNQVEVSGCEVTGDLIDFVVEVNVRRSVGWRLPGLPEGVAAVAYAGSVTGVP
>LT985188.1|SPD88521.1|3400936_3401272_+|protein-of-unknown-function
MKSERGMVSFEVAFGVMLAAVVALGLCYLLALVVQLGELQATAGEVARQRARDDTAAAARAERDAPVGTRVRVSNSGRDVVVIAELNSQPWGLWIPAMPLSARAVVAREGA
>LT985188.1|SPD88520.1|3400687_3400882_+|protein-of-unknown-function
MFNQIVAVTRSERGMTTAEYALGTIAVVCIVGVVISFVTGGAFSGEVADTVSQIIDWIQSFIKR
>LT985188.1|SPD88530.1|3413837_3414107_-|protein-of-unknown-function
MLRGRVGLDGSRNGGLHPGALVGTVVEARRLGQPRRARLFATLVHGLLVFNGVGHGSPPHGLSSIVPVGLCPAADRHAALLILAESARS
>LT985188.1|SPD88531.1|3413942_3414740_+|membrane-protein-of-unknown-function
MTHTVEDEQTMHQGGEQSRTPRLPEPPSFDDSADERTRVQPAVAAAVEADPPTQQQPVVPDDAIFRAQSVSTPSELSPEEAKLAAERAARREARTQALAQPDVRTIATPEPVVVTRRTTDRFIGAFALFGLRLVVAAIMAIRGLEIVTNLPAAEALFATTIIPEPRITAMVTGGAALAIAVALVFGLLTRVAGLGVLLIASGALAFVQWGFWSPFVPGRSGFIGELELLLAAVGLVFLCVGGGGFSLDRSFRKSREKDRLLDQGL
>LT985188.1|SPD88532.1|3414777_3416373_+|putative-exported-protease
MRVRTLGRWAVATLALALLAACVPQQTPSPSAPAPSPSATAAVPSGEVIDVSLVPNLEVDRPTSTDSNAQPAGFEDAPKGGLAGYTKQQLDWSTCGGKYECAEVLAPLDYANPDDQAITLALAKKAATKSPKLGTLFVNPGGPGGSGRNLVTYFASTGLEQYDIVGWDPRGTNASTPVKCFDDEETQAFTELDSSPDDPAETEALIVGTWQFAQSCREHSGALLDHISTVDTVRDLDLLRQLVGDEKLTFLGYSYGTQIGSYYADVFPQQVGRLVLDAAVDITDDDSVIQAMGFDLALGNFAAWCARQKCSLGSSKQAVLKTITDFFDELDATPLKVGDRPLTQTIAVSGVAAYLYGGIPAWRTLSNDLKSALAGDGTRLLKASDRLNDRNEDGTFGSLFYSFPAIGCADGYDKGVVEAEQRWVIDQQKAPIFGTYFGPGYTCPLWTARSTIQFKPTGSGAAPIVVVGATGDPATPYQSAVTMAKQLESGVLVTYAGEGHGTFGGKSTCVDRLVIDYLVNGTVPTDGVKCQ
>LT985188.1|SPD88533.1|3416858_3417935_-|O-ureido-L-serine-synthase
MASTTTRTTQGRGRLYESILETVGDTPAVRVNNIGVDGVTIYVKAEFFNPLSSVKDRLAISVIEDAERRGTLAPGQTVVEATSGNTGIGLAMVCAQKGYPLVVTMADSFSIERRRLMRMLGAKVVLTPRAQKGFGMYQKAVELAEANGWFLAHQFETEANADIHEATTAREIVNDFAGSRLDCFVTGYGTGGTVTGIGRVLRKERPEVRIVLSEPANAQLLGSGTPQERTPEGAPASSHPAFEPHPIQGWTPDFIPKVLQEAIDEHLFDEVVPVAGAEGMRWARELAAKEGIFTGVSGGSTFAVARQVAEQAEPGSVILAMLPDTGERYLSAPLFDDIPADMTDDELAISLSTPGYHL
>LT985188.1|SPD88534.1|3418144_3418267_-|protein-of-unknown-function
MLDGTINPGLVFDRVLPLDQTAEGYRLMDDREALKVMIRP
>LT985188.1|SPD88535.1|3418185_3419166_-|IMP-dehydrogenase
MRATVMYGPGDVRVENRPEPTIKQPTDAIVRVVRACICGSDLHPYHSMTPDSAGQTMGHEFIGVVEEVGSEVQKVTKGDFVISPFAWADNTCPICRDGFQTACPHGGFFSAAQAEYVRVPQADGTLVVTEATDDEATLKSLLTLSDVYLTGYHAAFMAKVQPGQTVTVVGDGAVGLSAVLAAKTMGAERIILMGRHTDRTDLGRRYGATDVVAERGKTGIAQVRELTGGEGSHVVLEAVGHRPAYDQSVAVVRAGGVISRVGVPQYDEAPVGFASLFGATSLSPAARRPSGPIWNRPSPRCSTARSTRAWSSTGCCRSTRPPRATG
>LT985188.1|SPD88536.1|3419255_3420326_-|transposase
MAIVADTYTYVVGVDTHAATHHYAIVETRSGGQITHGKFPTHAAGLLRAVDWISRRTSVDDNPAVDQVLISMEGTGSYGAQAAELLAARGYRVVDAPSPKRARGSGKNDHIDALVAARGALPKDSERLADRRAGHTRAALQILLTARDSMRRDRTRSKNQLTALLRTHNLDIDARKGINKVHISLIAGWRKRPTDTTLARIARTEAHRLATRIHTLDADLDSNEKAINALVRELEPTLLDLPGLGPINAAIVLAVWSHPGRIHDEAGFAKIGGVCPLEISSGNSKDHRLNRTGDRQLNSALNSIANTRMRHDETTKAYVKKRKQQGQTKPRIRRCLKRYIARQIFRHLNTTTLDKT
>LT985188.1|SPD88537.1|3420704_3421130_-|Cupin-domain-protein
MEKLPVKDTFKGPGSWFTGDVYGSPIYSGTDPSRMSATLVRFTPGARTHWHRHALGQCLHGTDGTGVVVTRDGTVITITAGDTVWTPGGEDHWHGALEGRMMCHLAMLERDGETDPTTWLEPVDDAEYARAMSIAAVQLTD
>LT985188.1|SPD88538.1|3421153_3421666_-|Predicted-arabinose-efflux-permease,-MFS-family-(fragment)
MCPARGCGSTSRWPRCWRLHSDNALVVSLLFAAYMAPSVAGAPLVGRLLPATAQRLGMVVFVVGVTGILVALVTTSVVVMTTATIVASVGQGMGVSASMRALLLGSTAAERPSLMAAIYLACYTGAMVPSIIAGQLSHVLPTVTIAFGYGVLALVATAITLVFARNPSGA
>LT985188.1|SPD88539.1|3422482_3422716_-|XRE-family-transcriptional-regulator-(fragment)
MVERLRARSAEFAEGWDSHHVAFQQFGTRVLNHPQVGRLAIDFQGLQPIGHDRIRIVVYTAADDAESSERLARLLNP

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Crispr_ID: LT985188_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_18

3609921-3610009

Orphan

Consensus_repeat	Method
GGGTCTCGACGAGCTCGACCAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_18

>merge|LT985188|18|3609921-3610009|CRISPRCasFinder
GGGTCTCGACGAGCTCGACCAGCGGACTCGTCATCCCGGCGCACGCCGGGATCTCACGTGAGCGGGGTCTCGACGGGCTCGACCAGCGG

>LT985188|18|17|3609921-3610009|CRISPRCasFinder
GGGTCTCGACGAGCTCGACCAGCGG	ACTCGTCATCCCGGCGCACGCCGGGATCTCACGTGAGCG
GGGTCTCGACGGGCTCGACCAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD88743.1\|3615759_3618072_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378942
LT985188.1\|SPD88726.1\|3599861_3600692_-\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88732.1\|3605812_3606697_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|239645
LT985188.1\|SPD88733.1\|3606696_3608805_-\|Polyphosphate-kinase	unknown	unknown	gnl\|CDD\|235469
LT985188.1\|SPD88737.1\|3611204_3611795_-\|putative-enzyme	unknown	unknown	gnl\|CDD\|369777
LT985188.1\|SPD88729.1\|3602089_3603154_-\|Phosphate-transport-system-permease-protein-PstA-1	unknown	unknown	gnl\|CDD\|273373
LT985188.1\|SPD88731.1\|3604223_3605318_-\|Phosphate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|270283
LT985188.1\|SPD88728.1\|3601295_3602075_-\|phosphate-ABC-transporter-(ATP-binding-protein)	unknown	unknown	gnl\|CDD\|184587
LT985188.1\|SPD88739.1\|3611973_3612471_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378046
LT985188.1\|SPD88730.1\|3603153_3604140_-\|Phosphate-transport-system-permease-protein-PstC-2	unknown	unknown	gnl\|CDD\|273992
LT985188.1\|SPD88725.1\|3598592_3599801_+\|Glycoside-hydrolase-family-3-domain-protein	unknown	unknown	gnl\|CDD\|224389
LT985188.1\|SPD88734.1\|3608804_3609647_-\|Mycothiol-acetyltransferase	unknown	unknown	gnl\|CDD\|132489
LT985188.1\|SPD88740.1\|3612467_3613385_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|223431
LT985188.1\|SPD88738.1\|3611845_3611977_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88735.1\|3610013_3610673_-\|Transcriptional-regulatory-protein-GlnR	unknown	unknown	gnl\|CDD\|223816
LT985188.1\|SPD88736.1\|3610765_3611191_-\|D-aminoacyl-tRNA-deacylase	unknown	unknown	gnl\|CDD\|235383
LT985188.1\|SPD88741.1\|3613387_3614422_+\|Nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|376752
LT985188.1\|SPD88744.1\|3618081_3619584_-\|putative-PGAP1-family-protein	unknown	unknown	gnl\|CDD\|224001
LT985188.1\|SPD88727.1\|3600878_3600998_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88742.1\|3614512_3615718_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|377312

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD88743.1\|3615759_3618072_-\|protein-of-unknown-function	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.07601e-22
LT985188.1\|SPD88732.1\|3605812_3606697_-\|conserved-protein-of-unknown-function	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	1.38975e-32
LT985188.1\|SPD88733.1\|3606696_3608805_-\|Polyphosphate-kinase	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
LT985188.1\|SPD88737.1\|3611204_3611795_-\|putative-enzyme	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.20388e-18
LT985188.1\|SPD88729.1\|3602089_3603154_-\|Phosphate-transport-system-permease-protein-PstA-1	gnl\|CDD\|273373	TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.62971e-81
LT985188.1\|SPD88731.1\|3604223_3605318_-\|Phosphate-binding-protein-PstS	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.98429e-74
LT985188.1\|SPD88728.1\|3601295_3602075_-\|phosphate-ABC-transporter-(ATP-binding-protein)	gnl\|CDD\|184587	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional.	0
LT985188.1\|SPD88739.1\|3611973_3612471_+\|conserved-protein-of-unknown-function	gnl\|CDD\|378046	pfam08768, DUF1794, Domain of unknown function (DUF1794). This domain forms a beta barrel structure but the function is unknown. The GO annotation for this protein indicates that the protein has a function in nematode larval development and has a positive regulation on growth rate.	1.66629e-47
LT985188.1\|SPD88730.1\|3603153_3604140_-\|Phosphate-transport-system-permease-protein-PstC-2	gnl\|CDD\|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	7.78579e-85
LT985188.1\|SPD88725.1\|3598592_3599801_+\|Glycoside-hydrolase-family-3-domain-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	1.23466e-52
LT985188.1\|SPD88734.1\|3608804_3609647_-\|Mycothiol-acetyltransferase	gnl\|CDD\|132489	TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	1.68908e-72
LT985188.1\|SPD88742.1\|3614512_3615718_-\|conserved-protein-of-unknown-function	gnl\|CDD\|377312	pfam04337, DUF480, Protein of unknown function, DUF480. This family consists of several proteins of uncharacterized function.	1.12803e-66
LT985188.1\|SPD88735.1\|3610013_3610673_-\|Transcriptional-regulatory-protein-GlnR	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.47395e-39
LT985188.1\|SPD88736.1\|3610765_3611191_-\|D-aminoacyl-tRNA-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.23546e-81
LT985188.1\|SPD88741.1\|3613387_3614422_+\|Nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|376752	pfam02277, DBI_PRT, Phosphoribosyltransferase. This family of proteins represent the nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) enzymes involved in dimethylbenzimidazole synthesis. This function is essential to de novo cobalamin (vitamin B12) production in bacteria. Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) from Salmonella enterica plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin.	4.37902e-120
LT985188.1\|SPD88744.1\|3618081_3619584_-\|putative-PGAP1-family-protein	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	0.000119644
LT985188.1\|SPD88740.1\|3612467_3613385_+\|conserved-protein-of-unknown-function	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	1.21529e-53

>LT985188.1|SPD88734.1|3608804_3609647_-|Mycothiol-acetyltransferase
MLSRQVVDQVLALAAAVAEADREYPLNEDARFALTSNDAGVEHRFERGGTDDLLGYAQGNRRHGTAQLLVHPEHRRQGIGTRLLHDLGPLPVWAFGDLDAAHHFATANHLVEKRRLLIMQRPLDPPVELDDPDIRPFDPASDTEAFLVLNAEAFAWHPEQAHFSRNDLDTRLGDDWYDPAGFLVSTDAEGLTGFHWTKRHPDGRGEVYILATGPRAQGQGLGRRLLAAGLNHLAEQGCTTVHLYVEAANTRAVELYDRAGFAVVHSDVLYGPPPEPSQEP
>LT985188.1|SPD88733.1|3606696_3608805_-|Polyphosphate-kinase
MTADVTPDESTELPDDRYSDRELSWLSFNNRVLDLAKDAKRVPLLERAKFLAIFSSNLDEFFMVRVAGLKRRIAAGVAVPSASGILPRDLHEAIMSRARELVTEQARVFAEDVRPALAEHGIEVLRWDQLTDPEREKMATLFEERIFPVLTPLAVDPSHPFPYISGLSNNLAVLLKNPTTGARQFARVKVPTLLSRFLQLGEGRFIAIEDVISQHLDRLFSGMQVLDHSTFRVTRNEDLEVEEDDAENLLYALEQELLRRKIGRPPVRLEVEEDIDDVMLDLLINELDITEKEVFKLPPPLDLRGLFSLADLDREALKYPAFLPRTHPELAEVETAKPADMFAALKQRDVLLHHPYHSFATSVQRFIEQAAADPTVLAIKQTLYRTSGDSPIIDALIDAAQAGKQVLALVEIKARFDEQANIAWARKLERAGCHVVYGLIGLKTHCKLSLVVRDEPDSLRRYCHIGTGNYNPKTARMYEDVGLLTANPVITDDVARLFNHLSGMGQERDYRRLLVAPHGIRRGLLEFIDDEIEHQRAGRPAGIRMKVNSIVDEAVTDALYRASQAGVPVDLWVRGICTVKAGVPGLSENIRVRSILGRFLEHSRLFWFANGGQPRVGLGSTDLMHRNLDRRVEVLVSITNPRHIGQIEEWFDMAFDEGTASWWLEPNGWTQRTADAAGEPLLDMQEALIQAVSARRTPERGA
>LT985188.1|SPD88732.1|3605812_3606697_-|conserved-protein-of-unknown-function
MAGGRLVEAAGAIVLRRPPGKQVQVLLIHRPSYNDWSLPKGKLDPDEYLPAAAVRETVEETAAVIRLVHPVDRIEYPIPTGTKRVAYWLGVMTAEKRFKPNSEVDRRTWLTVPSALRRMTYADERDLLQQAVTLPQTTPLLIVRHGKAMDRKHWSGKDQLRQLSSRGRKQSKQLIPLLDAYGVRDLDSSSSLRCTSTLTPYAKAQRLDVQGWATLSEEKAKESPEGVRKLMKRLIGETAASGVPRAICGHRPVLPLMLEVLGVPNRPMLTATVLVAHLSPEGETVSVEWHKPRV
>LT985188.1|SPD88731.1|3604223_3605318_-|Phosphate-binding-protein-PstS
MKISSFGAPVALFAAAALTLSACAANETGNPGTGTSGSAAAGGTLAGKGASSMSAAQQKWIADYQSAHPGVTINYSPDGSGAGREAFTSGAVQYAGSDRPFKDEEMGAGKFAKCTAESNALNLPVYVSPIAVIFNVEGVDSLKLDADTVAGIFAGAITKWNDPKIVATNPDAKLPDANITAVHRSDDSGTTNNFTDYLAQAAPTVWTQPAADTFPAAFGGEAAKGTSAVVDAVTTGTNTIGYADASAAGKLGHAELKVGDAWLKPTAEAAAKIVDESAVLPGRGEHDLALKLNRLSKDAYPAVLVSYALVCQTYKDAKDAELVKGFIGYAASTEGQKAAQTAAGSAPLSEAMAAKVKASIDSIK
>LT985188.1|SPD88730.1|3603153_3604140_-|Phosphate-transport-system-permease-protein-PstC-2
MATVTQSTQEVTPSPSTHRPPGQRALKRMGDRVFSGLSTGSGIIILVILAMVAGFLLMQALPALITSPEVLSKQGYGPFWSWILPFAWGTVWCSFWALLMAVPVAIGIALFISHYAPRRLASGLGYVIDLLAAVPSVVFGLWGSSVLAPAVQPLWLWLNTYLGWIPFFSGQASGTGRTLLTAAIVLAVMILPIITSLSREVFLQTPVLHQEAALALGATRWEMVKMTVLPFGRAGIVSSVMLGLGRALGETMAVAMVLSGASVINLEILTSQNPNTIAAVIAQNFPEAYGLKTNMLIAGGLVLFVITLVVNMIARLIVGRYKEFSGAN
>LT985188.1|SPD88729.1|3602089_3603154_-|Phosphate-transport-system-permease-protein-PstA-1
MSTITASRTDNPLTAGQLPRYAPWALGAVALIAGGVIDALVLAPFDIATTIFFGAVLFLPLNYLAGRLVVGRRAAADRLATNLVTGAFLLALLPLVSLLWEVLAKGLPRFDATFFSYSMRNVIGDGGGAIHALYGTLYATGIATVIAVPIGLMCAIYLVEYGSGALARSITFFVDVMTGIPSIVAGLFAYALMAMVFGPGTINGFSGSLALAVLMVPIVVRATEELLRIVPNELREASYALGVPKWRTITSVVLPTAVSGIVSGVILAIARIIGETAPLMIAAGFTNSINNNPFANPMMTLPVFVYDQYAHPGVERDFYNERAWAGALTLIVLVMLLNLLGRFIAKRFAPKTGR
>LT985188.1|SPD88728.1|3601295_3602075_-|phosphate-ABC-transporter-(ATP-binding-protein)
MSKRIEVTDLNCYYGKFLAVEDVTMTIHPRSVTAFIGPSGCGKSTFLRTLNRMHEVIPGAYVEGDVLIDGNNLYGPGVDPVNVRRQVGMVFQRPNPFPTMSIKDNVLAGYKLNKQRMKASEADDLLEKSLRGANLWEEVKNRLDKPGSGLSGGQQQRLCIARAIAMQPEVLLMDEPCSALDPISTLAVEDLIQELKETYTIVIVTHNMQQAARVSDETAFFNIAGTGAPGKLIEMGATEKIFSTPDEKATEDYITGRFG
>LT985188.1|SPD88727.1|3600878_3600998_-|protein-of-unknown-function
MFSIPVNARISPPLVEPVETPLRVRLREMTTGSVRPLPR
>LT985188.1|SPD88726.1|3599861_3600692_-|conserved-protein-of-unknown-function
MYRYWTGSSWSASITNNPMQAPPGGGFGAPPRPTGQPQWNPNQNRRSQNRWWLIVGAVVLALAVLVWFAVRNLGGALGTNPSTGSNPTQNVCPKQVTSTETPVAPPADGRVHGGALSYPRLGSPWSAPTEENRVPFGRDVLVQTVTIEPNYKANSSWVASVLVGELVAGDGFFSPQQGSEIVVKCIMGVFYDDAEVVRADKVNKATKVDGKDAWLVETHLAFDIPNLKAKGELAIILIVATKAESSSIFYASIPDNADPQLVSDARSAMADLRVEA
>LT985188.1|SPD88725.1|3598592_3599801_+|Glycoside-hydrolase-family-3-domain-protein
MRLAAALTALALLGGCTVAPAPTPSVEPVETTTVSTSAASTVSASASPTPSTSTETASPAGRCAAALVDDMTLRERAGQLVMVGVTTASAAEVKVLKDQKIGSVILMGQHTDGVAGVRKVVARLSWKGQSVPLLVAVDQEGGVVQRLRGKGFDTIPSARVQATWKDSTLQSSAGRWGRQLAAAGVTWTLAPVADVVPADMTSRNAPIGALRRGYGSKPAAVAAKVTAFVRGMGDSGVATSAKHFPGIGRVVGNTDFTAGVVDRVTTADDPYLQPFRSAVEAGTASIMVSTVTYTRIDAKHPAVFSPAVIGLIRKQLGFDGVVISDDLGAAKSMAAVPSRRRAVDFVKAGGDVAITVAPGLAAAFVQGIVSAADDNTSVEAQVRRAAIRVVTMKVDQGLVPCR
>LT985188.1|SPD88735.1|3610013_3610673_-|Transcriptional-regulatory-protein-GlnR
MASLLVVSNELTAGARPEVVLPAVALLAHDLRSAPADTTALTESAKADVIVIDGRNELANARMICRLFISSGITLPLLLVVTEGGLAAITGDWGVSDLILDKAGPAEFDARIRLLLSSNDSDGLIQAGGIVIDEAAYSARLGEQPLDLTYTEFELLKYLVLHPGRVFSREHLLADVWGYDYFGGTRTVDVHIRRLRAKLGSEHESLIGTVRNVGYRFSP
>LT985188.1|SPD88736.1|3610765_3611191_-|D-aminoacyl-tRNA-deacylase
MRAVVQRVTSASVTVAGEVVGSIAEPGLLVLVGATHDDTAATAEALADKVWNLRIMAGERSCADLAAPLLVVSQFTLYADTRKGRRPSWNAAAPAAVSEPLVDAFVEALRTRGARVETGRFGAMMAVASVNDGPMTICLDL
>LT985188.1|SPD88737.1|3611204_3611795_-|putative-enzyme
MAGPTPWNHNLHDHHLVLNETAGCATALDAGCGDGLLARDLHRQVPDVTAIDADAAVLNRGRVLDPGVAWVLGDALSHDFGRRFDLVASIATLHHVPDLAAGLRRLAQLTAPGGRLVVIGLARADRLVDLVPDLVAVPANLARRAQRGYWQHTAPTCWPPPHSYTDVRRTVTAELKAARYRRLLFWRYCVQWRKPA
>LT985188.1|SPD88738.1|3611845_3611977_+|protein-of-unknown-function
MAALIGALMTGGTIALIVAAAAVLIAALVVVVRIFTDKRRSDT
>LT985188.1|SPD88739.1|3611973_3612471_+|conserved-protein-of-unknown-function
MTFEIPSDLNPALVGLAWLRGRWEGSGYREWPGEEKIKFAQQVDFAENGGDYLHYLAQAFEVDDDGRPTKPLFMETGFWRPLPDGTVDVVMCSPDGFAEAWYGKLQPGRLDLVTDAVVRTPDAKVAYTAGRRLYGTVEGKLMYSFDRATETEPLRPFVWATLQRA
>LT985188.1|SPD88740.1|3612467_3613385_+|conserved-protein-of-unknown-function
MTVVRHESGPDAGAVWHYGHPLREQRWLAAGEASVDLSHRPTFSITGPDRLTWLNNIVSQKLDDLASDAWVTAYILDPNGRIVHVFGGVDDGATLWAATEPGHDEALLAWLRRMQFAARVEITERSESHAMVITPGGPGIVARDELDATLGERRAGTWAADALRIEAGQPRVFVDTDERTIPNELANPDGLTLGPAVHLQKGCYPGQETVARVYNLGRPPRRLTRLHLDGSAEALPQIGSEIVLDGRSIGRVGSSARHHELGPVALALIKRSVPADVPLVVDGIDAAQELIVDPEVGLHVRARLG
>LT985188.1|SPD88741.1|3613387_3614422_+|Nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MSLSDTVRGIVAVDEVARAQAVEHQLALAKPPHALGRLEELGVQLAAIAGQCPPPMPDPARIVVVAGDHGVVDQEVTRWPPALSGVLAGTVVDGVAGVSVLARSAGVQVVALDAGLAAPVPSVPEAVIRRGTADFTQGPAMTRDEATAAVELGIAQAELAYDEGVRCLATGEVGIGNTTTAAALIAAFTGAEAAAVAGRGADSPPEMVARKVDVIARALALHAPDPADPIGVLAAVGGVEQAVLTGLVLGAARLRLPVLLDGVTGVAAGLAAVALCPAASGYLIAAHAGAEPGIGVGLSALELTPVIDLGLALGEGTGAALAVPILRASVAVMTEMATLASLLG
>LT985188.1|SPD88742.1|3614512_3615718_-|conserved-protein-of-unknown-function
MPLPVLSPDEQRVLGSLLEKQRTVPGSYPLSLNSLRLACNQTSSRDPITDLDDRTLEDVVRELKGRGLLRVVWAGKGSRTLKYHQLLDSELSLQPDERALITVLLLRGPQAPGELKTRTERLHPFTDRDQVEQVLRRMAALPEPLVRELERRPGQQDHRWVHLLGPVPELPGQAQEPGVDREQVLAQGAGLRDERVRQTYDQVADAYFITLGAELIGKPFDVWLLERVASLARNNPIVDVGCGPGHITAFLADTGAQVSGVDLSPAMVEVAKREFSDLDFSVGNLFQLLKPRTAAGWGAVLAWYSLVHLAASELTPAVAALARTLGPGGVLALALHVGDEVRHVDELVGESVDIDFVLHDADQVLAAVRSTGLVELEWYRRGPVGDEADTERLYVLARRGD
>LT985188.1|SPD88743.1|3615759_3618072_-|protein-of-unknown-function
MPAMDYLDFDLQVEAEPTPDTYKVSVLASPKGEASGQMTFPFNADALENVILKLGRTRSGIRAIGSSTQDVAQKFGSALYDAVFGGEVGTCFRRSLDAADAAGKGLRIRLRLEDAPQLADVPWEYLYPSGLRQFLVLQTRTPVVRYLELPQPVAPLQVTPPLQVLVVVCSPAQLATLNVDGEVQRITTALAGLEQAGQVHVTVIPRATLMAVRRALRAGEFHVLHFIGHGGFDDAKAEGMLAFEDDNHQLNMVSGTTLATTISGFESLRLVVLNACEGARQSPQDPLGGVAQSLVKLGNVPAVVAMQFEITDEAATVFSSQFYAAMADGYPIDAALAEARVAVFSDNNDVEWGTPVLYLRASDGRIFDVAGGGRHTPVAHQPASSGSAPAAPAEGGGVKVVPVIVPPWPGGDGTASMRQQAPAGAPQQSGPPGQPSSGGFGGPPGGGSGGGFESGGGAAADHDGGHDGAAGQQHYQPPGGSSGKGVKWVILAAVAAVVALAIVLWPMVFPGSNTASPSPSPTDSISLSPTPTVPTTPSPSVSTRTLPPVRDVGTLRALQVPPNSSITVDGITPDWQWQLVANANHQITDTASTATADVYLMWDEAALYLLAKVHDKTLLEPDPNQPLKAWRGNAVVLELGPESSRLKDSDTVRPQDAYYIFGLSPAGQPPVTAILGPNARRTDFNVLRPTRGVQAAIGRDNDGWILEARIPWSVTGLNGVANGAMFAANVNVAERQQAGFANLGMMSTNAQRTLQVRMHPRYWQGLRLER
>LT985188.1|SPD88744.1|3618081_3619584_-|putative-PGAP1-family-protein
MATLDGSARQVNLGQGISVRAPGLRGSAEAHNVAPGSTTRAPEVDGSGRALDAALAREGFLRLRVITLDVAPVPGGAAGGDIRSPAADLDGMEVSVPDLGDDVAQVLLAVDENGVVSWNFPVDSADRLAPTTRGSGASVRFIVPAFASVPTPDEGAANRGVFGLIGRKVLELVALPLAELVVPPLAGAAARLWESKSRIARARTFTPANYASPDVPSLDDAEWQRLAQGRSLWFVHGTFVNTPTAFQAFPPDVLASLSDAYGGRVAAIDHHTLGLSPVENADLVRELVPDRLDLEVDIVCHSRGGLVSRALAGQGGEPVFNVRRIVHVASANHGTALATPSNLVPFIDRITTIVNLIPDGPAALVEATLTSVLVVVKIIAKYGLVGIPGLAAMDSAGDFIKGFNATELPTEQYAVAADFTPSGGWRAMAVRNLENTVVDRVFGTAANDLVVPTAGVYEGDDSMAVPEHRRLVLPRERGVYHGSFFGQPDVAKQIAGWLTG

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Crispr_ID: LT985188_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_19

3693396-3693493

Orphan

Consensus_repeat	Method
ATGAGGTCACCCGCTGCCGCGGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985188_19

>merge|LT985188|19|3693396-3693493|CRISPRCasFinder
ATGAGGTCACCCGCTGCCGCGGCTGACCTCCTGGTGGGCGAACCGGGCCGGCAAGCCGTCCCGTTTCTTGACATGAGGTCACCCGCTGCCGCGGCTGA

>LT985188|19|18|3693396-3693493|CRISPRCasFinder
ATGAGGTCACCCGCTGCCGCGGCTGA	CCTCCTGGTGGGCGAACCGGGCCGGCAAGCCGTCCCGTTTCTTGAC
ATGAGGTCACCCGCTGCCGCGGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD88826.1\|3702072_3702789_+\|Copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
LT985188.1\|SPD88822.1\|3695958_3696477_-\|conserved-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88812.1\|3686064_3686625_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|235825
LT985188.1\|SPD88808.1\|3682052_3683798_+\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|378333
LT985188.1\|SPD88825.1\|3700549_3702007_+\|Multidrug-resistance-protein-3	unknown	unknown	gnl\|CDD\|341045
LT985188.1\|SPD88823.1\|3696498_3698472_-\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378333
LT985188.1\|SPD88827.1\|3702937_3703819_-\|conserved-membrane-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|223131
LT985188.1\|SPD88816.1\|3691037_3692447_+\|Cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
LT985188.1\|SPD88821.1\|3695713_3696007_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378688
LT985188.1\|SPD88824.1\|3698679_3700305_+\|chaperonin-large-subunit	unknown	unknown	gnl\|CDD\|234573
LT985188.1\|SPD88819.1\|3694388_3695579_-\|Mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|380414
LT985188.1\|SPD88811.1\|3684536_3685979_-\|Serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|184161
LT985188.1\|SPD88807.1\|3680776_3681952_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|225203
LT985188.1\|SPD88814.1\|3688210_3689305_+\|multiple-sugar-binding-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
LT985188.1\|SPD88809.1\|3683787_3684003_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88813.1\|3687204_3687975_-\|Membrane-protein-DedA,-SNARE-associated-domain	unknown	unknown	gnl\|CDD\|223659
LT985188.1\|SPD88810.1\|3683951_3684359_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|224228
LT985188.1\|SPD88815.1\|3689597_3690965_+\|Chromosome-segregation-ATPases	unknown	unknown	gnl\|CDD\|379077
LT985188.1\|SPD88820.1\|3695559_3695712_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88818.1\|3693628_3694246_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD88826.1\|3702072_3702789_+\|Copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	1.99079e-28
LT985188.1\|SPD88812.1\|3686064_3686625_+\|conserved-protein-of-unknown-function	gnl\|CDD\|235825	PRK06547, PRK06547, hypothetical protein; Provisional.	2.42415e-34
LT985188.1\|SPD88808.1\|3682052_3683798_+\|Predicted-membrane-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	1.36881e-34
LT985188.1\|SPD88825.1\|3700549_3702007_+\|Multidrug-resistance-protein-3	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.96369e-53
LT985188.1\|SPD88823.1\|3696498_3698472_-\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	1.49983e-24
LT985188.1\|SPD88827.1\|3702937_3703819_-\|conserved-membrane-protein-of-unknown-function	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	3.08275e-80
LT985188.1\|SPD88816.1\|3691037_3692447_+\|Cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
LT985188.1\|SPD88821.1\|3695713_3696007_+\|conserved-protein-of-unknown-function	gnl\|CDD\|378688	pfam11662, DUF3263, Protein of unknown function (DUF3263). This family of proteins with unknown function appears to be restricted to Actinobacteria.	8.46398e-34
LT985188.1\|SPD88824.1\|3698679_3700305_+\|chaperonin-large-subunit	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
LT985188.1\|SPD88819.1\|3694388_3695579_-\|Mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|380414	cd07011, cupin_PMI_type_I_N, type I phosphomannose isomerase in eukaryotes and bacteria, N-terminal cupin domain. This subfamily contains type I phosphomannose isomerase (PMI; E.C. 5.3.1.8; also known as mannose-6-phosphate isomerase) found in eukaryotes and some bacteria such as Salmonella enterica. PMI catalyzes the reversible isomerization of fructose-6-phosphate (F6P) and mannose-6-phosphate (M6P), the first committed step in the synthesis of mannosylated glycoproteins. The active site, located within the N-terminal jelly roll-like beta-barrel cupin fold, contains a single essential zinc atom and forms a deep, open cavity large enough to contain M6P or F6P. PMI type I also has a C-terminal beta-barrel fold which has diverged considerably from the N-terminal domain and is not included here. This subfamily contains an alpha helical domain that is found in eukaryotic and some prokaryotic PMIs but is not present in their archaeal counterparts. F6P is a substrate for glycolysis and gluconeogenesis, while M6P is a substrate for production of activated mannose donor guanosine 5'-diphosphate D-mannose, an important precursor of mannosylated biomolecules such as glycoproteins, bacterial exopolysaccharides and fungal cell wall components. PMI is also essential for survival, virulence and possibly pathogenicity of some bacteria and protozoan parasites, as well as for cell wall integrity of certain yeasts. Thus, PMI is a potential target against fungal infections causing serious illness or death.	8.77748e-98
LT985188.1\|SPD88811.1\|3684536_3685979_-\|Serine-hydroxymethyltransferase	gnl\|CDD\|184161	PRK13580, PRK13580, glycine hydroxymethyltransferase.	0
LT985188.1\|SPD88807.1\|3680776_3681952_-\|conserved-protein-of-unknown-function	gnl\|CDD\|225203	COG2321, COG2321, Predicted metalloprotease [General function prediction only].	2.58818e-26
LT985188.1\|SPD88814.1\|3688210_3689305_+\|multiple-sugar-binding-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
LT985188.1\|SPD88813.1\|3687204_3687975_-\|Membrane-protein-DedA,-SNARE-associated-domain	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.78804e-18
LT985188.1\|SPD88810.1\|3683951_3684359_-\|conserved-protein-of-unknown-function	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.48377e-12
LT985188.1\|SPD88815.1\|3689597_3690965_+\|Chromosome-segregation-ATPases	gnl\|CDD\|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	1.03191e-86
LT985188.1\|SPD88818.1\|3693628_3694246_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.93299e-16

>LT985188.1|SPD88816.1|3691037_3692447_+|Cysteine--tRNA-ligase
MSFHLYDSLRREIVAFQPLEPGRVSIYVCGPTVQSAPHLGHMRSRVNFDVLRRWLAHTGHEVTLISNVTDIDDKILAKAEAAGRPWWAHAFIFEAAFDAAYRALGVPAATYEPRATGHIPEMIALIADLIERGHAYAAPDGSGDVYFDVASWPGYGSLTGQKVADMEPADDAEPRGKRDPRDFALWKGYKAGEPETASWQSPWGRGRPGWHIECSAMAGKYLGDSFDIHGGGLDLRFPHHENELAQSQAAGRPFARYWMHHAWVTMAGEKMSKSLGNTADVTAAVTTYGGRAVRLWLAGPHYRSAIELSEAALAEAAAQLARIDSFVDRAASVLGAPTGAADLPDAFVAAMNDDLGTPSALATLFTTVRDGNAALGAGDRAAAEQARASVLAMLHVFGLRADAPEWAGDAGADDLTPVVDGLVGALLEQRAQARARKDWPAADAVRDTLAGLGLKVEDTPNGPRWSLEN
>LT985188.1|SPD88815.1|3689597_3690965_+|Chromosome-segregation-ATPases
MPRILSAKPDSRLIPLPWQTPLAQWPEDHLVALPRGISRHVVRFIKVGNDVYAAKEVIETAAVHEYRMLQDLAREDTPAVEPLAVITDRRSVDGEPLDPVVITRHLDFSLPYRSLFSQGVRPDTVNRLLDAMVVLLARLHLIGFLWLDVSLSNILFRRDAGEFAAYLVDAETAEWHEELSEGQREHDLMIATTNLFGEFSDLEAGQLLDESLDPLVLVDTITSRYRDLWAELTGVEEFAGTELDRIESRVRRLNALGFDVAELDITTSADGSRVRIQPKVVDAGHHTRRLLRLTGLDVEENQARRLLNDLDTFRFRTNQQGVDEALVAHQWLTQSFEPVVTAVPAHLRGKRDAAQIFHEVLDYRWYASQRENRDVPLIDATHGYVRDVLEGLPDEAMNSRPLSEGSRQLANPFDPSQGYLDEDGAMPDDPWELEAEDVPEPTGVLDIAALRRGKG
>LT985188.1|SPD88814.1|3688210_3689305_+|multiple-sugar-binding-transporter-ATP-binding-protein
MATVSFKDATRVYPGADHPAVDKLNLEIGDGEFMVLVGPSGCGKSTSLRMLAGLEEVNAGAIWIGDRNVTDLPPKDRDIAMVFQNYALYPHMTVGDNMGFALKMAGVPKTERDQRVMEAAHLLGLESFLSRKPKALSGGQRQRVAMGRAIVRQPQVFLMDEPLSNLDAKLRVSTRTQIAALQTRLGVTTVYVTHDQVEAMTMGDRVAVMKDGVLQQCDSPLTLYDKPENIFVAGFIGSPAMNLISGNVNENGVVVGDWTVPVERSVLAKASGEDTLTIGIRPEDLELADHGIAVDVAVVEELGADAYTYGTLSGLSEDEKLSAPQIVARLRGRTPPERGTTVRFAAGEGHTLHVFSNKTGDRLS
>LT985188.1|SPD88813.1|3687204_3687975_-|Membrane-protein-DedA,-SNARE-associated-domain
MSTTPGDGQPADQPPGQQSDDAAAREWWDDPGLPWKHKPTKADISCLVWMGIASVYGLILLPLRPVMLGLAPHLLGSLGYRTGLVMTGALGATGDRWWPLVLVLGSLMAMKFDWIYWWAGKLWGHGLIEVWSGRSERARKRNQRAIAFTHKYETWAIFVTYLPIPMPAAVVYAALGAAGTKLSKFLIVSFISSVISSGLYMYLGWQIGEPAVELINAYGQWLWYLSIAIIVGMIAVAWWKSRQPKSDEPVIPGPAI
>LT985188.1|SPD88812.1|3686064_3686625_+|conserved-protein-of-unknown-function
MRSIDGDVATAAQAVVALVAEGLGVERGPLVIGIDGPSGSGKTTLADAVAGHLRCPVVHMDDLFAGWDGLGSAAQLLHDQVLRPLSRGDSGAYRRWDWHASEWAETVPVPWVPVLVVEGCASTVRPAGDLVTVRVWVEAATDVRMARGLERDGEAFRPHWQRWAAQERELFGADHTRDRADLIVHI
>LT985188.1|SPD88811.1|3684536_3685979_-|Serine-hydroxymethyltransferase
MSDLGSTASDIYRNVLSVIEGVEPRIAAATRAELTDQRASLKLIASENYASLPVLMTMGTWFSDKYAEGTIGHRFYAGCQNVDTVESVAAEHARELFGAEYAYVQPHSGIDANLVAYWSILAHRVESPVLERLGAKNVNELSEDDWETLRKSFAEQRVMGMSLDVGGHLTHGFRPNISGKMFHQRSYGTNAETQLIDYDKLLADARAFKPLILVAGYSAYPRRVNFAKMREIADEVGATLFVDMAHFAGLVAGKVFTGEEDPVPYAHLVASTTHKSLRGPRGGFVLATPEYAPSVDRGCPMVLGGPLSHIMAAKAVAFAEARTDSFRDYAAKVADNAKVLAEGLLKRGATLVTGGTDNHLVLIDTGSFGITGRQAESALLDSGIVTNRNSVPNDPNGAWYTTGVRIGTPALTSRGFGADEFDKVAELIVDVLANTTATTTAAGTPGKAKYTLADGVADRTKAASAELLDANPLYPGLAVS
>LT985188.1|SPD88810.1|3683951_3684359_-|conserved-protein-of-unknown-function
MLTAAVTLYADRGHAQVSLDDVARAANVTRGAVYHHYGSRTGLFAAVAEHVQSQVSQAVVAAAVGAGDDPFARLRAGSHAFLDAVTAPGVVQVLLVDAPALIGWQQWRRLDAQHSGRHLCDAWPTWGFRTICWTP
>LT985188.1|SPD88809.1|3683787_3684003_-|protein-of-unknown-function
MRRVADLGVPDDLLDALTAHLSGAMNEAALWLVDHADDPASAAQAAHRALDVILQAAVLAAASTPVSALSG
>LT985188.1|SPD88808.1|3682052_3683798_+|Predicted-membrane-protein
MLRRALTEMPHCEGSIVSRLPVIVLTRLFAGLLVLAAVVVGPSATRAMAAETVETYVVQGAINADGSLNVTATITFDGAAPAGLVQKFANARQVIGDREYVYTLRDVKATIADQPINATVTQQDGQTVVTMPTQGATAPVVLSYTVLGAAIKEPSGETTVMWRLLQGLSLPVKQFTATLTVPTMIQAVLCNAGPPVSPGVCTSWGGGTHEYPDPTFSDGPRGVGEVVEVIVRFPEGAVTPNEQIRDVWTLGKAFSTAPLPLSLALIALVLGGLAFWAVHRRMGRDAVGAGQSTPVAEFHPVGDGEAEFRVLDGVRPGQVGTLVDERVDPVDVTATLIDLAVRGHLRFTELPKESAYAVREWTLSRLAGGDDLLPYERTLLDAVAPEGGEPVLLSQLPEAVGAVIVTVQNELYDDVVKLGWFAQRPDQTRNTWFRIGLGCVVVAVLATIGLAAFTGFGLLGLALIAVSLLVVFLGQEMPARTEKGVAMLNGLGMLRADLLGQPTDSMPKGQELAELSEVLPYAVVLGGYERWLQALADADGDLDADSTDLNWYHAPDDWRLSDLPASLDRLIITIQGKLFSR
>LT985188.1|SPD88807.1|3680776_3681952_-|conserved-protein-of-unknown-function
MTQQYGPQQQYPSPWGGQQQPQGWNRPQQSFGQPAWPQQPGGYPQGGRYQQPGGYQQVPTRQPGGYPQRPGYQQPGQFNRAPQGLNPLSRILVTLVVLCGVLLAAIVVANMLGGSQGTSPQPQDTWSPPPPDLDPPDLPEPKTYSEATEWLQKNKVYDQQVAVPTACPDLQPIDAVNASESQLNAHLQDLTSCLVRVWQTPMQKAGFLMPRPPAAAYSQPIQTACGKLDDLKNAVYCGADQRIYYGMELPRIFSPSLRTSRFLMEMVLAHEFGHAIQYRTGIGISSMAWEQKATTKAAANVYSRRLEMQADCMAGIWVNSVGDSQGLSNSDLDALKQIAYNIGDDVLTGKQNIDEGHGLGATRQKWFETGLNANGDIGQCNTYTARDSQVR
>LT985188.1|SPD88818.1|3693628_3694246_-|SAM-dependent-methyltransferase
MTAQPPAGQSQWATIIARDPGHSQRYIDRFAMLAAQGADLVGEARLIDAIVGRGSTILDAGCGPGRHCGYLHRAGHRVVGVDLDPALIAEARRAEPGPDYVVGDLAGFELPSDGPQTFDAILCAGNVMGFLHPATRRPVLAGFRDRLAPAGRGVVGFGAGRGYDFDDFFSDVDAVGLTREQTFATWDLRPFTDQANFVVAVLSAG
>LT985188.1|SPD88819.1|3694388_3695579_-|Mannose-6-phosphate-isomerase,-class-I
MQPLVGTVQRYAWGTTDAIPAILGQPDDGRPMAEYWLGAHASSPSLLGTGTLSEHIDAAPGVLGDRSRAAFGEHLPYLMKLLSARHALSIQAHPSREQAIEGFARESRAGTPLDAPERTYKDSWPKPEILIALEPFDSLAGFRDPHQTAELFAALGVAEPLYSVIGPLTERKGPAAMAEVFLDVLSLGDERRHLIDETVAAAMHHRYDDDPVGEFARTALELDAVFPADPGILAALLMNRLRLQPGEALFVPAGMMHAHLSGTGVEVMANSDNVIRGGLTSKHIDVGELITVVDFNPWLPEILHPTLTRTGVLKYQTPCSEFEAWRMIVDESSGPIRVPGRGSARILLAVSGECVLDDGHTSLPLARGHAAFLSADEQDVFATGSAEVYGTSSGIR
>LT985188.1|SPD88820.1|3695559_3695712_+|protein-of-unknown-function
MPTSGCITCPIDGVRRAHVPRRHLTVADPMSPLRWTIELAPANDSGVIST
>LT985188.1|SPD88821.1|3695713_3696007_+|conserved-protein-of-unknown-function
MGGMSDPVSRPEAALDERSAAILEFEKHWWSFAGTKEAEIRERFDLSAPRYYQLLNDLIDTPAALAHDPLLVKRLRRQRATRQKERSAKRLGFSIKV
>LT985188.1|SPD88822.1|3695958_3696477_-|conserved-protein-of-unknown-function
MATSQQVPLTRAQRVRQVGNLMNLSSALGLTAARLGRARLRPGPQGLLLAEGYRLNFPSRAGAFTVGNVILTSTDFESLTAREPHVMDHESAHAWQYFWCGGLPFLPLYALAAGWSWLRTGDLASANFFERNAGLVRGGYREAPITNIGFKRLRGRLQTLIEKPSRLAERSF
>LT985188.1|SPD88823.1|3696498_3698472_-|conserved-membrane-protein-of-unknown-function
MFARVSRWIAYPLCWLLLMIVPMVVDAFRADAGPVSRTNQFTISSFVATYDARRSGDGLALDVTERITANFPNRYTNRGIERRLDARFGSTDIGLSNFRVTDPSGTSMPFTRRTEDDGDITLRIGSAGTYVYGRVDYVISYTITRAMVQARDRQEIYLDVNGTGWQQRFDRVQATVNVPPDLAGSLLGEQACYRGPAGSTARCGIARTGNAISTESVSLAPRESMTIAVGFVPGTVQQTVPAPLTGFGWWGLAAMPVVAALLLGLALVVRARRLGNLLLREDAPIQYTAPGVPPILAADFLGLPERGAAAQLTQLVLDGHATITADGVPVGTAPQPRSRLGRADLAKAGELRVQLGDPHDIDGSVRSICTALFGGTRSVALASVGERDVAGASAERWQLLRQSGLRRESWLGTTLFWVGYLGLIGFGWWQLALGLSGLAWPFLGLGSLAVVLLVAMAHYYPTLGGLTDQGSALADHLAGLHRFVTMAEADRIAWMQNAVDAPRLTGPDDTSLVDLYEPLLPYAIIFGVENTWRQALGDLYDLKPERPDKPEGQPWALALAAAWADSPDYRRDFEHRRHGTQSFWDSRPAWGDGWVSHAGQALGQGFDSWASSRDDDRGGSWGSGGGSSSSWSSSSSSGSSGGGSSGGGMGGGGGGGW
>LT985188.1|SPD88824.1|3698679_3700305_+|chaperonin-large-subunit
MAKLIEFNIEARRGLERGMNVLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQAMVREGLRNVTAGANPMGLKKGIEKAVAAIVESLAAQATDVETKEQIAATASISAADSTVGEIIAEAMDKVGKEGVITVEESNTFGLDLELTEGMRFDKGYISPYFVTDPERMEAVLDDPYVLIANSKISSLKDLLPVLEKVMQSGKPLLVIAEDTDGEALAGLIVNKIRGTFKSVAVKAPGFGDRRKAMLTDIAILTGGQVISEEVGLKLDAVTLELLGRARSVLVTKDETTIIEGAGDSDQIAGRVSQIRKEIENSDSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALLQAAKQVALDDLSGDEAVGAQIVLGACSAPLKQIASNAGLEGGVVAEKVSHLPAGEGLNAATGEYVNMLDAGIIDPAKVTRSALQNAASIAALFLTTEAVIADKPEKAPAMPAGGDGGMGGMDF
>LT985188.1|SPD88825.1|3700549_3702007_+|Multidrug-resistance-protein-3
MDENSTQTGDRGRSVGFRSDRGKVLMSLMLTTGLIAVDATILATAVPSVVKELGEFEQFPWLFSVYLLAQAVSVPIYSKLADTIGRKPIILVGVGLFLLGSVLAGLAWNMTSLIVFRVVQGLGAGATAPMAMTIVGDIYTVAERALVQGYIASVWAVASVVGPALGGIFSQFTSWRWIFLVNIPLCLLAGWALARFYRENVERRHHTIDYLGAGLLTVGLTAVILALLEGGNAWSWLSWQSLTSFGIGIAALVAFVPAERRAAEPVLDLAVVRRPLIMTTTAISLGVGALLIGVTSFVPTYLENALGVVPLISGVAVAALTLGWPLSASMAGRLYLRFGYRTTVLTGSAIAVVGCVALAVSGPYPNPWTVGAVSFVIGFGLGWTAAPSLIAAQASVDWSERGVVTGINVFARSAGSAIGVAVFGAIATNVIAAGRGEHDYATIVTASTWVFAAVALTAALMLLAALRLPRGGVDSTAYATATPTR
>LT985188.1|SPD88826.1|3702072_3702789_+|Copper-homeostasis-protein-CutC
MSGLLEVIALHAADAERAEAGGADRIELCGTLEDGGMSPEPALVEKVRAATSVQLRVMLRLRAGFGTDGGEAVRLRGLIASYLDAGADGMVLGFLNGLGEVDPQVVTELVADGDWPWTFHRAIDSCLYPDRGWAVLRRLPRLDQVLTAGSARGLEHGLEDVLARARADAWQAGVIMAGGGLHPDHVPWLARAGVRAFHIGGPARPLGSYKAYVDPELVGSWRRLIDTEVRHAAGGDER
>LT985188.1|SPD88827.1|3702937_3703819_-|conserved-membrane-protein-of-unknown-function
MTNPPDEHRLLERFLWLSLATALATVTLKAAAAVITNSVGMWSDALESTVNLLAAGIALWALRVSARPADHNHDFGHGKAEYLSAAVEGTLIIVAAAAIIWSAAQRLLNPVPLESVGLGIVLATIASALNLVTGLLLIRAGKRYRSITLEADGRHLMTDVWTSVGVLAGIAVVGITHLYWLDPVIAFAVGVNIVFTGYGLVRRSVVGLLDATLPPDEVAQIQQALVPLTDDPRVHLTDLRTRESGRQRFVQATLTVPGDWTVRRSHDLADRVESEVEHVLPGTVTFVHVEPAD

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Crispr_ID: LT985188_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985188_20

3785394-3785492

Unclear

Consensus_repeat	Method
GTTGGTCGAGCTTGTCGAGACCTCGCAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LT985188_20

>merge|LT985188|20|3785394-3785492|CRISPRCasFinder
GTTGGTCGAGCTTGTCGAGACCTCGCACGCAGAGGTCTCGACAGGCTCGGCCGGCCGACACACGCCGGTCTGTTGGTCGAGCTTGTCGAGACCTTGCAC

>LT985188|20|19|3785394-3785492|CRISPRCasFinder
GTTGGTCGAGCTTGTCGAGACCTCGCAC	GCAGAGGTCTCGACAGGCTCGGCCGGCCGACACACGCCGGTCT
GTTGGTCGAGCTTGTCGAGACCTTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
LT985188.1\|SPD88921.1\|3785548_3786499_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
LT985188.1\|SPD88917.1\|3781742_3782732_+\|transposase	unknown	unknown	gnl\|CDD\|377531
LT985188.1\|SPD88916.1\|3780837_3781242_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|226134
LT985188.1\|SPD88920.1\|3784091_3785390_+\|Sugar-binding-protein	unknown	unknown	gnl\|CDD\|270303
LT985188.1\|SPD88927.1\|3790861_3791062_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88911.1\|3777619_3777883_-\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88930.1\|3793717_3797293_+\|Transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
LT985188.1\|SPD88914.1\|3779579_3780557_+\|phosphoribosylpyrophosphate-synthetase	unknown	unknown	gnl\|CDD\|179535
LT985188.1\|SPD88912.1\|3777788_3778037_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88926.1\|3790102_3790708_+\|membrane-protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88918.1\|3782865_3783885_-\|Transcriptional-regulator	unknown	unknown	gnl\|CDD\|380511
LT985188.1\|SPD88919.1\|3783903_3783984_+\|protein-of-unknown-function	unknown	unknown	unknown
LT985188.1\|SPD88913.1\|3778110_3779583_+\|bifunctional-glucosamine-1-phosphate-N-acetyltransferase/UDP-N-acetylglucosamine-pyrophosphorylase	unknown	unknown	gnl\|CDD\|184641
LT985188.1\|SPD88924.1\|3788787_3789426_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|235534
LT985188.1\|SPD88922.1\|3786495_3787425_+\|Binding-protein-dependent-transport-systems-inner-membrane-component	unknown	unknown	gnl\|CDD\|223472
LT985188.1\|SPD88925.1\|3789435_3790035_+\|Peptidyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
LT985188.1\|SPD88915.1\|3780502_3780841_-\|Transcriptional-regulator-(modular-protein)	unknown	unknown	gnl\|CDD\|224647
LT985188.1\|SPD88928.1\|3791034_3792957_-\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|197312
LT985188.1\|SPD88929.1\|3793005_3793587_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|350365
LT985188.1\|SPD88923.1\|3787429_3788386_+\|Glycosyl-hydrolase-family-32	unknown	unknown	gnl\|CDD\|350121

Protein	Function_ID	Function_description	E-value
LT985188.1\|SPD88921.1\|3785548_3786499_+\|ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.30579e-93
LT985188.1\|SPD88916.1\|3780837_3781242_-\|conserved-protein-of-unknown-function	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.87286e-31
LT985188.1\|SPD88920.1\|3784091_3785390_+\|Sugar-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.64734e-53
LT985188.1\|SPD88928.1\|3791034_3792957_-\|protein-of-unknown-function	gnl\|CDD\|197312	cd09078, nSMase, Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine. Sphingomyelinases (SMase) are phosphodiesterases that catalyze the hydrolysis of sphingomyelin to ceramide and phosphorylcholine. Eukaryotic SMases have been classified according to their pH optima and are known as acid SMase, alkaline SMase, and neutral SMase (nSMase). Eukaryotic proteins in this family are nSMases, and are activated by a variety of stress-inducing agents such as cytokines or UV radiation. Ceramides and other metabolic derivatives, including sphingosine, are lipid "second messenger" molecules that participate in the regulation of stress-induced cellular responses, including cell death, adhesion, differentiation, and proliferation. Bacterial neutral SMases, which also belong to this domain family, are secreted proteins that act as membrane-damaging virulence factors. They promote colonization of the host tissue. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	7.12649e-21
LT985188.1\|SPD88930.1\|3793717_3797293_+\|Transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
LT985188.1\|SPD88918.1\|3782865_3783885_-\|Transcriptional-regulator	gnl\|CDD\|380511	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.56819e-96
LT985188.1\|SPD88914.1\|3779579_3780557_+\|phosphoribosylpyrophosphate-synthetase	gnl\|CDD\|179535	PRK03092, PRK03092, ribose-phosphate diphosphokinase.	0
LT985188.1\|SPD88917.1\|3781742_3782732_+\|transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.49051e-23
LT985188.1\|SPD88913.1\|3778110_3779583_+\|bifunctional-glucosamine-1-phosphate-N-acetyltransferase/UDP-N-acetylglucosamine-pyrophosphorylase	gnl\|CDD\|184641	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
LT985188.1\|SPD88924.1\|3788787_3789426_+\|50S-ribosomal-protein-L25	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	3.46868e-59
LT985188.1\|SPD88922.1\|3786495_3787425_+\|Binding-protein-dependent-transport-systems-inner-membrane-component	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	9.11896e-75
LT985188.1\|SPD88925.1\|3789435_3790035_+\|Peptidyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	4.44583e-92
LT985188.1\|SPD88923.1\|3787429_3788386_+\|Glycosyl-hydrolase-family-32	gnl\|CDD\|350121	cd18609, GH32-like, Glycosyl hydrolase family 32 family protein. The GH32 family contains glycosyl hydrolase family GH32 proteins that cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	4.20267e-143
LT985188.1\|SPD88929.1\|3793005_3793587_-\|conserved-protein-of-unknown-function	gnl\|CDD\|350365	cd14515, DUSP3-like, dual specificity protein phosphatases 3, 13, 26, 27, and similar domains. This family is composed of dual specificity protein phosphatase 3 (DUSP3, also known as VHR), 13B (DUSP13B, also known as TMDP), 26 (DUSP26, also known as MPK8), 13A (DUSP13A, also known as MDSP), dual specificity phosphatase and pro isomerase domain containing 1 (DUPD1), and inactive DUSP27. In general, DUSPs function as protein-serine/threonine phosphatases (EC 3.1.3.16) and protein-tyrosine-phosphatases (EC 3.1.3.48). Members of this family are atypical DUSPs; they contain the catalytic dual specificity phosphatase domain but lack the N-terminal Cdc25/rhodanese-like domain that is present in typical DUSPs or MKPs. Inactive DUSP27 contains a dual specificity phosphatase-like domain with the active site cysteine substituted to serine.	7.33153e-16
LT985188.1\|SPD88915.1\|3780502_3780841_-\|Transcriptional-regulator-(modular-protein)	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.195e-22

>LT985188.1|SPD88920.1|3784091_3785390_+|Sugar-binding-protein
MISLKKLGVVGIAAALSLSFAACSKGGGAQATSNSTAAASGLVELSMWTHNAGNKEELAAVTSVVNDFNASQTKYQVKLQAFPQDSYNQSVTAAAAAKKLPCILDIDQPNVANWAWAGYLAPIEGMDDVLGKFLPSTVAKYNGKTYAYGYYDVSLTWVTRKSILKKYGIRTPTIDQPWTADEFMAAMKKVKDSGDFQYPADLATGWTGEWWPYGFSPLLQSFGGDLINRTDFKSAQGSLNGDAAIKWANWFNQMGKDGYMAKKSSSDPSQDFMNGKTAFLWNGSWTAVPTRKKFGDDILFAPPVDFGNGPKVGGGSWTWGMSTGCADAAGAAEYLKFAAADKYVAKVAQDTNNIPATDAAAALVPGFEEGGQNDIFRQYSKKFTVLRPETPGYPFVATTFEKAAKDILNGADPKATLDQAVADIDSNQQQYS
>LT985188.1|SPD88919.1|3783903_3783984_+|protein-of-unknown-function
MADSAMATGVIPSQPSLREKYHMKTI
>LT985188.1|SPD88918.1|3782865_3783885_-|Transcriptional-regulator
MTKRTTLADVAALAGVSPTAVSLVLNDKPGSRLSADAAARIRAAAEQLDYRPNPAARSLRVGKTQTVAFLSDDVTVTRYASAMIRGLLDVAEQHRHTVLIAETGSNPRRIKAALRAMLDRQPDAVVFGLMGAKEIDVPKIPAELPVVLINSTSPADHPSVLPAEYEAGRAMATMLLEAGHRDIAVIGYSPEHASNPRESVTIQLRYDGIFAALNEYGVTPSWLYDSFVWEPHVGYEAMQELLASGARPTGLICLNDRLAFGVYQAMAEHGLRVPDDISIASFDDDVIASYLRPGLTTAAIPYEEMGRRAMEMLLSDAEPEHLLVHMPLRVRESIRTVDP
>LT985188.1|SPD88917.1|3781742_3782732_+|transposase
MDSEQPSFADVEYGNRRRVSKREQFLEQMEATIPWQVWIDLIEPYYYLDRPGKTGRKAKPLAMMLRMYLLQVWFNLSDEGVEDAIYDSFAMRRFLGVDFTVEQVPDATTLLHFRHLLEKHQLGQRLLAAQNDLFEREGWIMRGGTIVDATIIAAPSSTKNATGARDPEMHQTRKGNQWYFGMKAHIGTDAGTGYVHSVTATAANVSDITEAVHLMRPDDTAGWGDAGYLGVDKREEITGDPHLAGVTWHIAARKSQLARMHPHERAIESRKAGVRAKVEHAFLIVKRDFGFTKTRYRGLAKNLHHLHVAFALANWLMRARAVALTTAAA
>LT985188.1|SPD88916.1|3780837_3781242_-|conserved-protein-of-unknown-function
MSLFITCPVESVDRSTAFYTALGWPLNAEMSDHNVSCFAIAPEQYVMLGSREMYASVGGSEQLIGGPDTPSKVTVSFDLPSRQSVDELVERAGAAGGRIGDTDDYTFMYQRQFDDPDGYHYSPFWMKPEAEPTP
>LT985188.1|SPD88915.1|3780502_3780841_-|Transcriptional-regulator-(modular-protein)
MSDLAAALDVVGARWALLIVEQLLDGPQRYGDLQRALGVPTNMLAIRLRELEDAGVLARLPLRHNTRAYALTERGLALRESIQALGTWAAAGRPAYSTPPNSEVTEPSTKTS
>LT985188.1|SPD88914.1|3779579_3780557_+|phosphoribosylpyrophosphate-synthetase
MSGIKRPTEKHLMLCTGRAFPELAEEVAELLGVDLVPTRQVTYANSEIYVRFEESVRGADAFVIQSHPAPVNEWLMEQLIMIDALKRASAKRITVVSPFYPYGRQDKKHAGREPISARLVADLYKTAGADRLMSVDLHAAQIQGFFDGPVDHLFSIPVLADYVASKYPSKNMTVVSPDAGRVKLADNWSDRLGLPLAIIHKRRDPNKANEVAVGEVVGDVQGRVCLLVDDMIDTAGTICQAAAALRDHGASAVIAAATHPILSGPAAQRLNASAFEEVIVTNTLPIRDDLVIPKLTVLSIAPLLAKAIQEVFVDGSVTSLFGGVE
>LT985188.1|SPD88913.1|3778110_3779583_+|bifunctional-glucosamine-1-phosphate-N-acetyltransferase/UDP-N-acetylglucosamine-pyrophosphorylase
MTTTDQTRVAAVVIMAAGAGTRMKSATAKVLHQLAGRSMLSYAVDAASAVEPDHLVVVVGFQRDQVEAHLAEVAPQVTTAVQEQQLGTGDAVRSGLAGLGDLVGDVVVTSGDVPLLTGETLRALVEAHRGEGNAVTVLTTIAPDPTGYGRIVREGGEVVRIVEQRDATDDERVITEINAGIYVFDAQVLSAGLADLSSDNDQGELYLTDVVGFARGLGRRVGASVLADSVQAEGVNDRIQLAALSAELNRRILRRWMAEGVTVLDPATTWVHDSVDLAPDVTLLPGTSLEGATSVATGAVIGPDTTLIDVEVDEGAHIVRSHATLAVIGPNADVGPFAFIRPGTKLGVKGKIGAFVETKNAAIGDGAKVPHLTYCGDATVGEGANIGAGTIFANYDGVTKSHTTVGKGSFIGSDSVLVAPVEVADGAYVAAGSTITSPVGPGELAVARGTQRNIAGWVARKRPGTRTAAAAEAALGGSQTGATEGSEGVR
>LT985188.1|SPD88912.1|3777788_3778037_+|protein-of-unknown-function
MASTSIPATAPSETPSRLVCWSLPVELGEVLIGSTPAHQGRQHRHVGAHRAMVHRRSAGRRPSPMTAGRTVRLRGSRGVGVH
>LT985188.1|SPD88911.1|3777619_3777883_-|protein-of-unknown-function
MSTSPSSTGNDQQTSLDGVSDGAVAGIDVEANARAPRVGVEPTSLILIQSQAGPAGRPTGDRPLTLRCPRGASHLGAFGARAGWASD
>LT985188.1|SPD88921.1|3785548_3786499_+|ABC-transporter-permease
MSTATATVAASGQEVALGKRKSKGRAPSGRASGTAWAMLAPAAILMLVFLIVPIVLTLSLAFTDARLISPTPAKFTGLANFTRLFGSNTFWHSLLNTVIFAVVIVPVQSGCALGLALLVNAKVRGTNFFRTVYFLPVVTSMVVVSMLWMFMYQQNGLINALLAKVGITGPDWLNDPNTALFAIILMSAWQAMGFHMVIWLSGLQTISADLYEAAALDGATGWQQFVHVTWPGLKQTRTFILITITIAAFSLFTQIQIMTQGGPLDSTSTLVFLAVRTGFQQQQTGYASAMSLVFFVLVLAVSLVQRYLTRDKELQR
>LT985188.1|SPD88922.1|3786495_3787425_+|Binding-protein-dependent-transport-systems-inner-membrane-component
MSDTLSHVADSHADATVAVAGTKAKPWLGPLVMLLRVVLCLVFGLPLVFLIVSSFKPDNEIFAALGTINAFLPVGSLSLDNYSGVIDRVPFATFMMNSVLISVVTVALGLLVNSMAAFALSRMEFRGQKLILGVILATLIVPFETMALPLLWWVNQLPYFDGSIGWLDTYEVQIIPFVANAFSIYLFYQYFDSIPKELDEAAKVDGAGWFRIYRSIVMPLSGPAIATVAILTFLPAWNSYLWPLMVTQSEAIRPVMVGMDYFKQMTGSTGTAWGQIMAYASMITVPVLALFIAFQRAFINSIASSGVKG
>LT985188.1|SPD88923.1|3787429_3788386_+|Glycosyl-hydrolase-family-32
MFSLPEAWVWDFWIVDDGTRYHLFFLYASRALKNPDARHYRASVGHAVSDDLTNWTRVTDALVRSDAPAADDLATWTGSIIKGPDGLWYLFYTGATAAPGGSNVQSICYATSPDLYEWTKGGQILSADPQWYEKLSDGQWHDEAFRDPWVLADPNGDGWHLLITARANHGPADDRGVVGHATSPDLVSWTLQPPLSEPGQGYGQLEVFETVRLEGRDYLVFNCLAGDLSAAHRATGTTGGVWLAAAASPLGPYDLAGAQQLTDDSQYVGRFVHDRSGQAVFLAFRNVGLDDSFVGSITDPQRVVVNDAQVVIEGALVG
>LT985188.1|SPD88924.1|3788787_3789426_+|50S-ribosomal-protein-L25
MAEVKIAAVARTEFGKGAARRARRDGLVPAVLYGHGSDPVHVSLPGHDTLLALRVANALLSVSIDGKAAQLALPKQVQRNPVKGTVEHVDLVIVKRGEKVTVEVPLHVIGADDKADRVIVMDQQTITLEVEATNIPAAIEIDVTALGIGDSIAAKDLNLPEGAVFPGEPDDLMLSVTAAKTQEQIDAELDAAVAGDEGEAPAEAEAEAAASE
>LT985188.1|SPD88925.1|3789435_3790035_+|Peptidyl-tRNA-hydrolase
MAAWLVVGLGNPGPTYAFHRHNVGFMVVDELARRAGAGFTAPRGMRADICETRLTALGMGGIGADAQRIVLVKPRTFMNDSGAAVAKACAYFGVKPAEVVVVHDELDLDFGRLRLKLGGGDNGHNGLKSIRSALGTGDFHRVRFGIGRPPGRQAPSDFVLTNFPASAREELALEIDRSADAVEALILRGLEAAQNTFNS
>LT985188.1|SPD88926.1|3790102_3790708_+|membrane-protein-of-unknown-function
MTLPNEPQPAERDQTAESSGWTPVPGSAPMVPAAGSLHDSAPFGTPPPLPNAAPSATGPRIVGGVLLALGALAVWWGGPALGAFESPTLDVFRFNPLRLMAGFFGPFAVVVGLGALGGGLSRKGQPARPDALTWVSVALMIVLGLGLLVWGLPGIGDLIGTFSHVSYDMPRVRMSRILAVMLGLFATLVGVSALRRFVRGG
>LT985188.1|SPD88927.1|3790861_3791062_-|protein-of-unknown-function
MGLCQGLEVTIEDPDGIPVAHGVTSWPLNGMQPGEPAEVKRITKVTVFDGWKDGTYSVVCTLTRDA
>LT985188.1|SPD88928.1|3791034_3792957_-|protein-of-unknown-function
MDALRLMTFNVQCLPLIAGVLDGSISIPGALVGLFPGTDDDAIDRATAICADLLAIAPDERPQVIALNEAFNEDARGIFLDQLKPTWPNIVEAVYEADLEEDAGLMVFSSLPFHTLPDGSTHRAQFYSDDGGDDSWASKAAVLVQVGLPAEVTTLVFTHLQAAYDSDDQYRDVRARQLEELLKLIDRGVGDDRDQWRNVVVAGDLNIRGDAGSASDEWYETFTGAGEFGQRFADSWIQQRPPGVQENLDPGLSHRDRATQGEQRLDYVCCLKRRDGEAIVAHQMRLGHRTVSDHYALEALIQFEADRCQPCRAVNLDELSPMAGAPVAGQPVGSLAWHVDVTIPADDGRFWLWLPRPGTFSFFAATDLTYQVFAATDLSHPLELFSTLKAGEVPASVQVAVQEFRGQLDPDGGTFVHRQPMLICVRSASGDPVRHRPFMVFEHRGDTPQTALALPPHFDLDLPFPLNEYLGADDQVWLRVKPRATLMGTTRSESIVLTQGQADAARMTQYDRALTALADWYGSGELSFSFDATDDDEFYVTVKRDDPSQIRQVIRWNTPVCYLRLDKGMQVHVDDETGKDWPGADEPELDLSIDGTHLTHVTWDDADTGEDWPGFTDAIRNAVVARGWTSHRWGCARAWR
>LT985188.1|SPD88929.1|3793005_3793587_-|conserved-protein-of-unknown-function
MTDLPTFVHADADFVTDRIAVGGGLSSHGMVAHQQIAELMDLGITHVADLRAEWSDADLVFERAPDITYLHHPVEDAGQTIPGEYFQTLADWATEALAQPNTKLLVHCHAGVNRGPSGAFTVLLAQGWGVREALEAIRAARPIAWIDYADDAIDWHLADADDAARTAAHEIVTEWRWHNHLPFNQAIRQTRPD
>LT985188.1|SPD88930.1|3793717_3797293_+|Transcription-repair-coupling-factor
MTLSGLVDLVAADPTIAPSVDDARRGLLRALDLTAPEALRPVLVAALAAGSGRPALLITSTYREAEATTAALASLLGDERVAYYPAWETLPHERLSPRSDTVGRRLQVLRRLAGNDELPAPDVIVAPVRSVLQPQVRGLGDLLPVTLRVGAEHDLSDLARALVNAAYTRVDLVERRGEFAVRGGILDVFPPTEEHPVRVDFFGDEIDEIRAFAVADQRSFGDPITEVVASPCRELLITDEVKARAAALADATSTIQGNLTEMLDKIAQGHAVDGMEALSAALVDGLELLIDVVPANTLVLVSDPDRVRARAHELVQTSQEFLQASWVAAAEGGKAPIDLAAGAYRELADVRQHALGRGQAWWSLSPWAAAPEAVAPVDDWDDPIDLGIGESDLAGVESRTVAAREGEVFRGDAQAGVEAVRASVAANSRVVLVADSPGLATRMGEVLTEAGVPARGALDLAQPPEPGLATITVAELRHGFTLPGVELTLYTAADLAGQREVDKSARKMPARRKNTIDPLELEAGDPVVHETHGVGRYVEMVQRTVQGATREYLVVEYAPSKRGQPGDRLFVPMDQLHLITRYVGGENPTLDKMGGADWNKRKSRARKAVREIAAELIKLYAARQASQGYAFGADTPWQRELEDAFSYVETPDQLAAITEVKADMQQVIPMDRLICGDVGYGKTEIAVRAAFKAVMDGKQVAVLVPTTLLVQQHHATFADRYAGFPVTVAPLSRFQTPAEAKKTAEGIADGSVDVVVGTHRLLGNEVQFKDLGLVIVDEEQRFGVEHKEALKKLRLNVDVLSMSATPIPRTLEMAITGIREMSVIATPPEERHPVLTFAGPWDEAQVRAAIRRELAREGQVFYIHNRVNSIEKTAKRLAELVPEARVAVAHGQMNEHALEQVMVDFWERRADVLVCTTIVEAGLDISTANTLLIERADLLGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHDRLATMAAHTDLGAGMAIAMKDLEIRGAGNLLGGEQSGHIAEVGFDLYIRLVGEAVADFRGEDVEPEPEMKIELPVEAHLPVDYVESERLRLEMYKRLAQVSDEVGIEAVRDELHDRYGPLPEPAEALLAVARFRLLARTKGITEIIMAGTSVRFSPADLPDSKQLRLTRLYPGSQVRKTAGHVLIPRPMTRPIAGQPIVDLPLLQWATTVLDDIF

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT985188_12	12.1\|2784027\|25\|LT985188\|CRISPRCasFinder	2784027-2784051	25	MH015259	Ruegeria phage vB_RpoP-V17, complete genome	43729-43753	3	0.88
LT985188_12	12.1\|2784027\|25\|LT985188\|CRISPRCasFinder	2784027-2784051	25	NC_049435	Ruegeria phage vB_RpoP-V12, complete genome	43739-43763	3	0.88
LT985188_12	12.1\|2784027\|25\|LT985188\|CRISPRCasFinder	2784027-2784051	25	MH015253	Ruegeria phage vB_RpoP-V21, complete genome	43729-43753	3	0.88
LT985188_12	12.1\|2784027\|25\|LT985188\|CRISPRCasFinder	2784027-2784051	25	MH015257	Ruegeria phage vB_RpoP-V14, complete genome	43837-43861	3	0.88

1. spacer 12.1|2784027|25|LT985188|CRISPRCasFinder matches to MH015259 (Ruegeria phage vB_RpoP-V17, complete genome) position: , mismatch: 3, identity: 0.88

tcctcaagcctctggtgggtaatgg	CRISPR spacer
tcctcaagcctctgatgggtgatgt	Protospacer
**************.*****.***

2. spacer 12.1|2784027|25|LT985188|CRISPRCasFinder matches to NC_049435 (Ruegeria phage vB_RpoP-V12, complete genome) position: , mismatch: 3, identity: 0.88

tcctcaagcctctggtgggtaatgg	CRISPR spacer
tcctcaagcctctgatgggtgatgt	Protospacer
**************.*****.***

3. spacer 12.1|2784027|25|LT985188|CRISPRCasFinder matches to MH015253 (Ruegeria phage vB_RpoP-V21, complete genome) position: , mismatch: 3, identity: 0.88

tcctcaagcctctggtgggtaatgg	CRISPR spacer
tcctcaagcctctgatgggtgatgt	Protospacer
**************.*****.***

4. spacer 12.1|2784027|25|LT985188|CRISPRCasFinder matches to MH015257 (Ruegeria phage vB_RpoP-V14, complete genome) position: , mismatch: 3, identity: 0.88

tcctcaagcctctggtgggtaatgg	CRISPR spacer
tcctcaagcctctgatgggtgatgt	Protospacer
**************.*****.***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

262919 : 271565

Mycobacterium_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD85297.1\|262919_263216_-	membrane protein of unknown function	Q6A201	Oenococcus_phage	3.1e-08	39.6
SPD85298.1\|263434_263869_+	protein of unknown function	NA	NA	NA	NA
SPD85299.1\|263725_264085_-	protein of unknown function	NA	NA	NA	NA
SPD85300.1\|264407_265295_+	Fructose-bisphosphate aldolase class 1	A0A0K0KVJ8	Prochlorococcus_phage	4.2e-08	27.1
SPD85301.1\|265864_267292_+	conserved protein of unknown function	A0A2H4PDG5	Mycobacterium_phage	6.2e-46	49.8
SPD85302.1\|267300_268092_-	conserved protein of unknown function	G1D5B7	Mycobacterium_phage	9.7e-49	43.1
SPD85303.1\|268173_268599_-	Thioredoxin	A0A1J0GW78	Streptomyces_phage	7.8e-13	43.2
SPD85304.1\|269163_270792_+\|transposase	transposase	U5N3F9	Enterobacteria_phage	3.2e-14	27.7
SPD85305.1\|270788_271565_+\|transposase	transposase	U5N3V8	Enterobacteria_phage	1.0e-34	34.6

DBSCAN-SWA_2

898426 : 940934

Mycobacterium_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD85950.1\|898426_898882_+\|transposase	transposase (fragment)	NA	NA	NA	NA
SPD85951.1\|899021_899195_+	conserved protein of unknown function	A0A0M3UKA1	Mycobacterium_phage	1.9e-05	48.2
SPD85952.1\|899276_899846_+	conserved protein of unknown function	NA	NA	NA	NA
SPD85953.1\|899700_900654_+\|transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	2.0e-141	78.3
SPD85954.1\|900809_901160_+	Bleomycin resistance protein	NA	NA	NA	NA
SPD85955.1\|901156_901498_+	conserved protein of unknown function	NA	NA	NA	NA
SPD85956.1\|901718_902330_+	Flavin reductase	NA	NA	NA	NA
SPD85957.1\|902316_902484_-	protein of unknown function	NA	NA	NA	NA
SPD85958.1\|902716_903055_+	conserved protein of unknown function	NA	NA	NA	NA
SPD85959.1\|903251_904181_-	putative Ketopantoate reductase	NA	NA	NA	NA
SPD85960.1\|904294_904663_-	Putative membrane protein (Modular protein) (fragment)	NA	NA	NA	NA
SPD85961.1\|904830_905805_-	conserved protein of unknown function	NA	NA	NA	NA
SPD85962.1\|905826_906480_-	Relaxase/Mobilisation nuclease domain-containing protein (fragment)	NA	NA	NA	NA
SPD85963.1\|906636_907479_+	conserved protein of unknown function	NA	NA	NA	NA
SPD85964.1\|907526_907997_-	conserved protein of unknown function	NA	NA	NA	NA
SPD85965.1\|907785_907983_+	protein of unknown function	A0A142F2M3	Mycobacterium_phage	5.4e-09	68.8
SPD85966.1\|908160_908652_+	protein of unknown function	W6CWV1	Ralstonia_phage	6.1e-09	40.2
SPD85967.1\|908521_908665_+	DNA resolvase (fragment)	NA	NA	NA	NA
SPD85968.1\|908684_913481_-	Helicase	A0A2H4UVA3	Bodo_saltans_virus	9.1e-33	24.1
SPD85969.1\|913564_913882_-	protein of unknown function	NA	NA	NA	NA
SPD85970.1\|914194_914593_+	TnpV protein	NA	NA	NA	NA
SPD85971.1\|914601_919569_+	putative helicase	H2DE57	Erwinia_phage	2.6e-232	34.2
SPD85972.1\|919709_919886_-	conserved protein of unknown function	NA	NA	NA	NA
SPD85973.1\|920008_921604_-	conserved protein of unknown function	NA	NA	NA	NA
SPD85974.1\|921569_921884_+	protein of unknown function	NA	NA	NA	NA
SPD85975.1\|921885_923151_+	protein of unknown function	NA	NA	NA	NA
SPD85976.1\|923539_925573_-	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA	NA	NA	NA
SPD85977.1\|925596_926658_-	Modification methylase HgiDII	A0A0R6PG08	Moraxella_phage	4.9e-88	47.2
SPD85978.1\|927519_928053_-	conserved protein of unknown function	NA	NA	NA	NA
SPD85979.1\|928045_928366_-	protein of unknown function	NA	NA	NA	NA
SPD85980.1\|928198_928303_+	protein of unknown function	NA	NA	NA	NA
SPD85981.1\|928501_928651_+	protein of unknown function	NA	NA	NA	NA
SPD85982.1\|929007_929208_+	protein of unknown function	NA	NA	NA	NA
SPD85983.1\|929268_930258_+\|transposase	transposase	E5E3P6	Burkholderia_phage	1.6e-77	48.9
SPD85984.1\|930459_931239_-	protein of unknown function	NA	NA	NA	NA
SPD85985.1\|931304_931496_+	protein of unknown function	NA	NA	NA	NA
SPD85986.1\|931465_932845_-\|transposase	transposase	A0A218MNI5	uncultured_virus	1.9e-36	38.1
SPD85987.1\|932843_933884_+	Integrase catalytic region	NA	NA	NA	NA
SPD85988.1\|933979_935563_+	conserved protein of unknown function	NA	NA	NA	NA
SPD85989.1\|935751_936909_+\|transposase	transposase	A0A220NQR7	Corynebacterium_phage	6.3e-105	52.8
SPD85990.1\|937149_937518_-	protein of unknown function	A0A222YY48	Mycobacterium_phage	2.7e-09	32.7
SPD85991.1\|938119_938311_-	protein of unknown function	NA	NA	NA	NA
SPD85992.1\|938324_938771_-	18 kDa antigen	NA	NA	NA	NA
SPD85993.1\|938878_939199_+	Transcriptional regulator, MerR family (modular protein)	NA	NA	NA	NA
SPD85994.1\|939390_939591_-	protein of unknown function	NA	NA	NA	NA
SPD85995.1\|939944_940934_-\|transposase	transposase	E5E3P6	Burkholderia_phage	1.2e-77	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LT985188

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection