CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
LT985194	Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP3	0 crisprs	NA	1
LT985192	Pseudomonas syringae strain CFBP 2116 genome assembly, chromosome: 1	7 crisprs	DEDDh,PD-DExK,csa3,cas3,DinG,RT	10
LT985193	Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2	0 crisprs	NA	0
LT985195	Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP4	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

37990 : 80267

Escherichia_phage(36.36%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPE17153.1\|37990_38299_-\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	1.6e-20	51.0
SPE17154.1\|38792_39980_-	Indoleacetate-lysine synthetase	NA	NA	NA	NA
SPE17155.1\|40062_41439_-	putative 21 kDa protein in iaaL 5'region	NA	NA	NA	NA
SPE17156.1\|41758_41908_+	hypothetical protein	NA	NA	NA	NA
SPE17157.1\|41900_42047_+	hypothetical protein	NA	NA	NA	NA
SPE17158.1\|42010_43240_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SPE17159.1\|43241_43496_+	hypothetical protein	NA	NA	NA	NA
SPE17160.1\|43500_43641_+	hypothetical protein	NA	NA	NA	NA
SPE17161.1\|43683_43812_+	hypothetical protein	NA	NA	NA	NA
SPE17162.1\|43775_45002_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SPE17163.1\|45010_45259_+	hypothetical protein	NA	NA	NA	NA
SPE17164.1\|45557_45740_+	hypothetical protein	A0A2H4JDU5	uncultured_Caudovirales_phage	2.1e-07	54.2
SPE17165.1\|45771_46194_+	Antitoxin HicB	Q7Y3V7	Yersinia_phage	4.6e-21	39.0
SPE17166.1\|46359_46680_+	hypothetical protein	NA	NA	NA	NA
SPE17167.1\|46702_49729_-\|transposase	transposase	NA	NA	NA	NA
SPE17168.1\|49718_50300_-	putative resolvase	A0A0A7NPV4	Enterobacteria_phage	9.6e-38	49.4
SPE17169.1\|50631_51474_-	type III effector	NA	NA	NA	NA
SPE17170.1\|51680_52568_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SPE17171.1\|52548_52830_-	hypothetical protein	NA	NA	NA	NA
SPE17172.1\|52911_53151_-	hypothetical protein	NA	NA	NA	NA
SPE17173.1\|53330_54572_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SPE17174.1\|54687_55293_+	type III effector HopBF1	NA	NA	NA	NA
SPE17175.1\|56359_57169_-	Insertion sequence IS21 putative ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
SPE17176.1\|57165_58188_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	1.7e-77	46.1
SPE17177.1\|58236_58497_+	hypothetical protein	NA	NA	NA	NA
SPE17178.1\|58919_59744_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
SPE17179.1\|60041_60353_-	Toxin ParE	NA	NA	NA	NA
SPE17180.1\|60349_60601_-	antitoxin	NA	NA	NA	NA
SPE17181.1\|60741_62475_+	hypothetical protein	NA	NA	NA	NA
SPE17182.1\|62539_62779_+	hypothetical protein	NA	NA	NA	NA
SPE17183.1\|63112_63541_+	transcriptional regulator, GntR family	NA	NA	NA	NA
SPE17184.1\|63876_64797_+	hypothetical protein	NA	NA	NA	NA
SPE17185.1\|64813_65041_+	hypothetical protein	NA	NA	NA	NA
SPE17186.1\|65006_65195_+	hypothetical protein	NA	NA	NA	NA
SPE17187.1\|65438_66257_+	hypothetical protein	NA	NA	NA	NA
SPE17188.1\|66451_66622_+	hypothetical protein	NA	NA	NA	NA
SPE17189.1\|67118_68348_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SPE17190.1\|68349_68604_+	hypothetical protein	NA	NA	NA	NA
SPE17191.1\|68738_69164_+	ultraviolet light resistance protein A	A0A1W6JNS2	Morganella_phage	2.7e-13	35.0
SPE17192.1\|69141_70446_+	Protein UmuC	I6RSM4	Salmonella_phage	2.8e-101	46.1
SPE17193.1\|70478_71288_-	Insertion sequence IS21 putative ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
SPE17194.1\|71284_72307_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	1.7e-77	46.1
SPE17195.1\|72375_72528_-	hypothetical protein	NA	NA	NA	NA
SPE17196.1\|72524_73070_-	hypothetical protein	NA	NA	NA	NA
SPE17197.1\|73242_74211_+	hypothetical protein	NA	NA	NA	NA
SPE17198.1\|74376_74658_+	hypothetical protein	NA	NA	NA	NA
SPE17199.1\|74654_75152_+	N-acetyltransferase GCN5	NA	NA	NA	NA
SPE17200.1\|75516_75648_+	hypothetical protein	NA	NA	NA	NA
SPE17201.1\|75649_76012_-	hypothetical protein	NA	NA	NA	NA
SPE17202.1\|76002_76683_-	ParA family protein	Q2A085	Sodalis_phage	6.6e-38	41.6
SPE17203.1\|77274_78309_-\|transposase	putative family 20 transposase	NA	NA	NA	NA
SPE17204.1\|78482_78971_+	hypothetical protein	NA	NA	NA	NA
SPE17205.1\|79232_80267_+\|transposase	putative family 20 transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LT985192

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CRISPR-Cas detection and classification

Crispr_ID: LT985192_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985192_1

1457829-1457961

Orphan

Consensus_repeat	Method
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985192_1

>merge|LT985192|1|1457829-1457961|CRISPRCasFinder
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACCACGCGGAGCGTGGGAACGAGAATCTGAGCCGAACACCAATTCACCTGAAGTCACAGAACCGCTGTGTGACGCAGAGCGTCACGAAAGGCATTACTACGC

>LT985192|1|1|1457829-1457961|CRISPRCasFinder
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACCACGC	GGAGCGTGGGAACGAGAATCTGAGCCGAACACCAATTCACCTGAAGTCACAGAACCG
CTGTGTGACGCAGAGCGTCACGAAAGGCATTACTACGC

Protein	Signature genes	Signature genes Name	Protein_function
LT985192.1\|SPD80855.1\|1446873_1447839_+\|Glucokinase	unknown	unknown	gnl\|CDD\|234716
LT985192.1\|SPD80870.1\|1463069_1464689_-\|deoxyribonuclease	unknown	unknown	gnl\|CDD\|143635
LT985192.1\|SPD80873.1\|1466850_1469955_-\|Multidrug-resistance-protein-MdtB	unknown	unknown	gnl\|CDD\|182501
LT985192.1\|SPD80865.1\|1459075_1460545_+\|Glucose-6-phosphate-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
LT985192.1\|SPD80866.1\|1460531_1461245_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694
LT985192.1\|SPD80864.1\|1457989_1458856_-\|HTH-type-transcriptional-regulator-HexR	unknown	unknown	gnl\|CDD\|183082
LT985192.1\|SPD80861.1\|1453404_1454571_+\|Trehalose-import-ATP-binding-protein-SugC	unknown	unknown	gnl\|CDD\|236947
LT985192.1\|SPD80859.1\|1451655_1452564_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
LT985192.1\|SPD80858.1\|1450264_1451551_+\|putative-sugar-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|224567
LT985192.1\|SPD80867.1\|1461262_1461937_+\|2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
LT985192.1\|SPD80871.1\|1464808_1466173_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
LT985192.1\|SPD80862.1\|1454697_1456059_+\|Porin-B	unknown	unknown	gnl\|CDD\|226185
LT985192.1\|SPD80860.1\|1452556_1453402_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
LT985192.1\|SPD80854.1\|1445050_1446877_+\|Phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
LT985192.1\|SPD80868.1\|1462064_1462304_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378970
LT985192.1\|SPD80869.1\|1462522_1463002_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|131337
LT985192.1\|SPD80856.1\|1447889_1448627_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|223816
LT985192.1\|SPD80857.1\|1448688_1450095_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236531
LT985192.1\|SPD80872.1\|1466162_1466840_-\|Transcriptional-activator-protein-CzcR	unknown	unknown	gnl\|CDD\|130454
LT985192.1\|SPD80863.1\|1456167_1457043_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185697

Protein	Function_ID	Function_description	E-value
LT985192.1\|SPD80855.1\|1446873_1447839_+\|Glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	4.16018e-170
LT985192.1\|SPD80870.1\|1463069_1464689_-\|deoxyribonuclease	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.65253e-61
LT985192.1\|SPD80873.1\|1466850_1469955_-\|Multidrug-resistance-protein-MdtB	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
LT985192.1\|SPD80865.1\|1459075_1460545_+\|Glucose-6-phosphate-1-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
LT985192.1\|SPD80866.1\|1460531_1461245_+\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	2.21463e-73
LT985192.1\|SPD80864.1\|1457989_1458856_-\|HTH-type-transcriptional-regulator-HexR	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	0
LT985192.1\|SPD80861.1\|1453404_1454571_+\|Trehalose-import-ATP-binding-protein-SugC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.17728e-177
LT985192.1\|SPD80859.1\|1451655_1452564_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.35737e-73
LT985192.1\|SPD80858.1\|1450264_1451551_+\|putative-sugar-binding-periplasmic-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.95551e-36
LT985192.1\|SPD80867.1\|1461262_1461937_+\|2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	1.91619e-119
LT985192.1\|SPD80871.1\|1464808_1466173_-\|sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	2.59347e-128
LT985192.1\|SPD80862.1\|1454697_1456059_+\|Porin-B	gnl\|CDD\|226185	COG3659, OprB, Carbohydrate-selective porin [Cell envelope biogenesis, outer membrane].	5.26241e-170
LT985192.1\|SPD80860.1\|1452556_1453402_+\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.7775e-76
LT985192.1\|SPD80854.1\|1445050_1446877_+\|Phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
LT985192.1\|SPD80868.1\|1462064_1462304_-\|hypothetical-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	6.17099e-36
LT985192.1\|SPD80869.1\|1462522_1463002_+\|chemotaxis-protein	gnl\|CDD\|131337	TIGR02284, conserved_hypothetical_protein, conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.	3.88627e-44
LT985192.1\|SPD80856.1\|1447889_1448627_+\|transcriptional-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.03657e-81
LT985192.1\|SPD80857.1\|1448688_1450095_+\|sensor-histidine-kinase	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.69236e-49
LT985192.1\|SPD80872.1\|1466162_1466840_-\|Transcriptional-activator-protein-CzcR	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	8.49768e-97
LT985192.1\|SPD80863.1\|1456167_1457043_+\|aldose-1-epimerase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	5.20832e-82

>LT985192.1|SPD80863.1|1456167_1457043_+|aldose-1-epimerase
MTSLDAQLPEHPLQRFFRSRRARPTFEWERHQLRDVLVIDHPQCQAVFSRQGAQLLHFQPQGQKPWLWCAAQWPQVGAIRGGVPVCWPWYGRHPGESGWPAHGWGRLLDWKLIDSSESEKGVSLHWRLQLWDWQVDLHAELGQGMELRLSTRHEDSEPCHFSHALHAYWRIGDVAEVALEGLDGAQGYDELSRQVCQQQGELRVVGGCQRVFEHAGALQLQDPTWQRRLNIDTGDSANTVVWHPGNRPLLGVCGSETAGFVRVEAASGSGDAFSLQPGEQVQLKLQASLAG
>LT985192.1|SPD80862.1|1454697_1456059_+|Porin-B
MKKINKGKSLSRFQLVSTLSVLGAMGLAGSVHAADAFSADSPWMTGDWNGKRTELLDKGYDFSLEYVSEMASNIKGGYNDDKTGRYSDQFALGMKVDLQKAFGWQDAEFKLAITERSGRNISNDRIGDPRAGTLSSSQEVWGRGQTWRLTQMWIKQKYFDGALDVKAGRFGPGEDFNSFPCDFQNLSFCGSQVGNYVNTWYNWPISQWALRVKYNITPEVYAQVGVYEQNPSNLETGNGFKLSGSGTKGMILPVELVWTPTVNSLPGEYRVGFYKSTPNADDVYEDVNGQPQAATGAAFKSHDSKHGWWVVAQQQLTTHDGDASRGLSIFANATVHDKATNFVDNYQQIGFTYKGPFNSRPKDDIGIGIARIHVNDDVQDRVRLANQISGINDYDNPGYLPVQSTEYNSEIYYGFHVTNWLTVRPNLQYVKHPGGVDQVDDAIVAGIKIQSKF
>LT985192.1|SPD80861.1|1453404_1454571_+|Trehalose-import-ATP-binding-protein-SugC
MATLELRNVNKTYGSNLPDTLKNIDLSIKDGEFLILVGPSGCGKSTLMNCIAGLESISGGEILIDGQDVSSTSPKDRDIAMVFQSYALYPTMSVRENIAFGLKIRKMPQADIDAEVARVAKLLQIEHLLNRKPGQMSGGQQQRVAMGRALARRPKIYLFDEPLSNLDAKLRVEMRTEMKLMHQRLKTTTVYVTHDQIEAMTLGDKVAVMKDGIVQQFGTPKQIYTDPANLFVASFIGSPPMNFIPLRLQRKDGQLIALLDSGQARCELPVGVSHAGLEDREVILGIRPEQIMLAGAESNGMPTIRAEVQVTEPTGPDTLVFVTLNQSKVCCRLAPDVAPQVGESLTLQFDPSRVLIFDAQSGERLGVLGAPPLAERANNVPVEPQVIN
>LT985192.1|SPD80860.1|1452556_1453402_+|sugar-ABC-transporter-permease
MTSHVEKPGISVSRVLIYAVLILACLIYLVPLVVMLLTSFKTPEDIGTGNLLSWPSVITVIGWIKAWDIVDGYFWNSIKITVPAVVISTSIGALNGYVLSMWRFKGSELFFGLLLFGCFLPFQTVLLPASYTLGKMGLASTTVGLVFVHVVYGLAFTTLFFRNYYVSIPDALVKAARLDGAGFFTIFGRIILPMSTPIVMVCLIWQFTQIWNDFLFGVVFSSGDSQPITVALNNLVNTSTGAKEYNVDMAAAMIAGLPTLLVYVLAGKYFLRGLTAGAVKG
>LT985192.1|SPD80859.1|1451655_1452564_+|sugar-ABC-transporter-permease
MSSVAAISKASPMDALQRWLPKLVLAPSMFIVLVGFYGYILWTFVLSFTNSTFLPTYSWAGLAQYSRLMDNDRWWVASKNLAVFGGMFIAISLVIGVLLAILLDQRIRREGVIRTIYLYPMALSMIVTGTAWKWLLNPGLGLDKMLRDWGWEGFRLDWLIDSDRVIYCLVIAAVWQSSGFVMALFLAGLRGVDQSIIRAAQMDGASLPMIYWRVVLPSLRPVFFSAIMILAHIAIKSFDLVAAMTAGGPGYSSDLPAMFMYSFTFSRGQMGMGSASAILMLGAILAILVPYLYSELRAKRHD
>LT985192.1|SPD80858.1|1450264_1451551_+|putative-sugar-binding-periplasmic-protein
MNSMSRLAFVISLASLFPLSATAAESKGTVEVVHWWTSGGEKAAVDVLKAQVEKDGFTWKGDGISGGGGAAAMTVLKSRAMASNPPGAAQIKGPDIQDWAKMGLLDTDALKDVAKAEKWDSLLDKKVSDTVKYDGDYVAVPVNIHRVNWLWINPEVFKKAGIDKAPTTLEEFYAAGDKLKKAGFIPLAHGGQPWQDSTVFEAVVLSVMGADGYKKALVDLDKGALTGEGMVKSLTELKKVATYMDVDGKGQDWNLEAAKVINGKAGMQIMGDWAKSEWTAAKKVAGKDYQCVAFPGTDKAFTYNIDSLAVFKQKDKGTTAAQQDLAKVAMGEDFQKVFSINKGSIPVRQDMLADMDKYGFDSCAQTAAKDFLADAKTGGLQPSMAHNMATSLAVQGAFFDVITNYINDPKADPAETAKKLATAVKSVQ
>LT985192.1|SPD80857.1|1448688_1450095_+|sensor-histidine-kinase
MLLLTLLAVLLAQTLSSVIWLSQLRATQTEGLVTSARSLAYSMAASVSYFRSLPLAYRPMVLDQLRSMGGTRFVVSLNDHPLDMQIMQPTPRKQAVLDVVGEVLRQRLGNGPDITVWFARPDELRIFNSGLKLDELPRSWAHYALTLEPVNPPVLVTQIEMAPGEWFYIASLLPEPYTSLEEQELPLQQVSFIVLTSMFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVVEGGGSEVIEVSRAFNAMRTRISRYLTERGQLFSAISHDLRTPITRLRLRVELLEDEHLQRKFSRDLDELELLVKGALQCVKDTDIHENIEPVDLNALLDCLVEPWLLADGNGRVTQQGEAQAAYPGKPLALRRCMGNLIDNALKYGHRAHLKVEDNATAFVLHVDDEGPGVPEQRLEHVFEPHFRLAGNQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPRTAE
>LT985192.1|SPD80856.1|1447889_1448627_+|transcriptional-regulator
MSSVSKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDGFSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRAQFGQERPGGDVILFDEWRLDMVSHRLFHNDGEEVILSGADFALLKLFLDNPQQILDRDTIGNATRGRELMPLERIVDMAVSRLRQRLRDTGKSPRLIRTIRGSGYLLAANVNSQAGNGY
>LT985192.1|SPD80855.1|1446873_1447839_+|Glucokinase
MKLALVGDIGGTNARFAIWEDDTLHSVRVFPTIDYAGPEKAIEVYLQDLELQRGDISHVCLAVAGPVDGDFFQFTNSHWQLSREAFCADLKVDHLLLINDFTAMALGMTRLKEDEYLTVCPGAGKPDRPRVVVGPGTGLGIGTLIKLDGSRWLALPGEGGHADLPIGTAREALLWTRLMAEHEHVSAEVVLSGAGLLLLYQVSCALDDIEPVLKSPAAVTSAALAGDPVAAAVLEQFCVFLGRVVGNNVLTLGSLGGVYIVGGVVPRFTEFFINSGFKRAMAEKGVMSDYFKNLPVWLVTAEYPGLMGSGVALQQAFGSQI
>LT985192.1|SPD80854.1|1445050_1446877_+|Phosphogluconate-dehydratase
MHPRVLEVTERLIARSRDTRQRYLQLIRGAASDGPMRGKLQCANFAHGVAACGPEDKQSLRLMNAANVAIVSSYNEMLSAHQPYEHFPAQIKQALRDIGSVGQFAGGVPAMCDGVTQGEPGMELAIASREVIAMSTAVALSHNMFDAAMMLGICDKIVPGLMMGALRFGHLPTIFVPGGPMVSGISNKEKADVRQRYAEGKASREELLDSEMKSYHGPGTCTFYGTANTNQLLMEVMGMHLPGASFVNPYTPLRDALTAEAAHQVTRLTKQSGSFMPIGEIVDERSLVNSIVALHATGGSTNHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMSFLIRELLAAGLLHENVNTVAGYGLSRYTKEPFLEDGKLVWREGPLESLDENILRPVARPFSPEGGLRVMEGNLGRGVMKVSAVAPEHQIVEAPAKVFQDQKELADAFKAGELECDFVAVMRFQGPRCNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVCPEAFDGGPLALVRDGDVIRVDGVKGTLQVLVEASELAAREPAINQIDNSVGCGRELFGFMRMAFSSAEQGASAFTSSLETLK
>LT985192.1|SPD80864.1|1457989_1458856_-|HTH-type-transcriptional-regulator-HexR
MDRVRNLLEQIQGRLDELNKAERKVAEVILLNPQMATRLSIAALAQAAKVSEPTVNRFCRSFSVSGYPELKLQLAQSLASGAAYVSRAVEADDNPEAYTQKIFGSAIASLDSACQQLDPALISKSVDMLIQARQIHFFGLGASAPVALDAQHKFFRFNLAVTAHADVLMQRMIASVAHTGELFVIISYTGRTRELVEVARIARANGASVLGLTAAGSPLAQASTVSLNIPLPEDTDIYMPMTSRIIQLTVLDVLATGMTLRRGVDFQPHLRKIKESLNDSRYPIEDQG
>LT985192.1|SPD80865.1|1459075_1460545_+|Glucose-6-phosphate-1-dehydrogenase
MPLITVEPCTFALFGALGDLAVRKLFPALYQLDRAGLLHEDTKILALAREPGDEQSHLAYIEKSMRRFIPEAELEPDNLGRFLARLSYLHVDFLKAEDYVALAERVGNAETLIAYFATPASVYGAICENLASVNLAERTRAVLEKPIGHDLASSRRVNDAVAQFFPENRVYRIDHYLGKDTVQNLIALRFANSLFETQWNQNHISHVEITVAEKVGIEGRWGYFDQAGQLRDMIQNHLLQLLCLIAMDPPSDLSADSIRDEKVKVLKALAPFTPERLATQVVRGQYTAGYSEGKAVPGYLEEENSNTQSDTETFVALRADIRNWRWSGTPFYLRTGKRMPQKMSQIVIHFKEPPHYIFAPEQRLQISNRLIIRLQPDEGISLQVMTKDQGLDKGMQLRSGPLQLNFSDTYRSARVPDAYERLLLEVMRGNQNLFVRKDEIEYAWQWCDQLIAGWKKAGDAPKPYPAGTWGPMSSIALITRDGRSWYGDM
>LT985192.1|SPD80866.1|1460531_1461245_+|6-phosphogluconolactonase
MAICDLELPAGLVARDFDTPQQLADALAANVAERLKQAIGENGLATLVVSGGRSPVAFFKSLAVQPLHWSKVVISLADERFVPTEHADSNAGLLQRHLLQGPVAKAKFLGLYSVAGSVEEAALAADQALAELPPIDVLILGMGDDGHTASLFPGSPNLKEALDLQGERRCLPMLAPSVPHQRLTLTRRLLASARSPILSVSGQAKLDTLRTALAGDDLAEMPVRAFLNPSLEIYWCP
>LT985192.1|SPD80867.1|1461262_1461937_+|2-dehydro-3-deoxy-phosphogluconate-aldolase
MTQNENNQPLISMANKIAQIDELCAKAKILPVITIARDQDALPLADALAAGGMTALEVTLRSAFGLSAIRILREQRPELCVGAGTILDRKMLADAEAAGSQFIVTPGSTQDLLQAAVDSPLPLLPGVSSASEIMIGYAMGYRRFKLFPAEISGGVAAIKALGGPFNEVRFCPTGGVNEQNLKSYMALPNVMCVGGTWMIDNAWVKNGDWGRIQEATAQAMALFD
>LT985192.1|SPD80868.1|1462064_1462304_-|hypothetical-protein
MNPEKLRLLVTQEMPFGKYKGRLIADLPGHYLNWFAREGFPKGELGGLLALMQEIDHNGLGALLDPLRTRPRQSFKDKG
>LT985192.1|SPD80869.1|1462522_1463002_+|chemotaxis-protein
MTDINKETISILNDLIETSKDGEEGFRTSAEHAKSAQVKSFLANRSTEVAAAVRELQAEVTALGGKPEDSSSVSGALHRAWVNLKSMVTSDDDKAVLEEVEKGEDVAKKAYREALEKARAKNVSPNVIALIEKQQAGVLANHDKVKALRDAARAAHAAS
>LT985192.1|SPD80870.1|1463069_1464689_-|deoxyribonuclease
MLYTQHSKHKNNDNCLNHLSRFIRLQVEQPMMLFASSRQDRLKWTRPELMLIFGSSLSMFAILGIVASLLARESDDAAQTAARAAANIVQLIDADVMHNAELYDSSLQGMISAWQRPDLQDLSPELRQLVLFDRSTAASFKGDLVLLDNKGAILADSLSVIPRNDNFSDRSYFKDHKADPSLGLHVSAPYKSRWGYKDWCISFSRRMSGPNGEFTGMVSAAMRLVYFKHLFMSQNLGVGSSINLINTAGILIVRYPDLEGEDLIGKDYSHSPNFQRILQEGHGSFAAMSTQLNARRLYTFSRVGNLPLVVVIGQSEDEVYAVWRRNAWLVGSATSVLCLGILWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMETEWARAQRSGKQLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQTISFNIRRPGDRVARYGGEEFVVVLPETDLPGAMMIAEQIRKAAESLPLFPGAQQPITVSIGVVSEMVRQGDKLEAFFGIADKALYQAKHKGRNRVEHRSSVAREMTDQV
>LT985192.1|SPD80871.1|1464808_1466173_-|sensor-histidine-kinase
MRVDAIALRLSGLFALVALVVFLLIGSALYLQVDKSLDLLPRAEVDARYSVLESAVGRFGNPEHWGKIKAKLELLSEEDKRLRFWVVSDNPLYEFGNPDANIRRFAQGAPGMHDLKLADHPFAFKVLVSEFPAKEQRPALRFLTAIDTETFWHTQHSLLVALISLATLGILLASALGYWVARIGLRPLTSLSQEVQKLAPPRLSGRLQLSPLPPELEQFVASFNSTLERVEQAYSRLESFNADVAHELRSPLTNLIGQTQVALTRGRSAEHYFEVLQSNLEELERLRSIINDMLFLASADQGTKVKAQTCASLADEVATTLDYLDFILEDAHVQVRVQGDASAPIEKPHLRRALINLLHNAVQHTDAGQVIEVTIESRDADVSISVTNPGVQIAPEHLPRLFERFYRVDASRSNSGANHGLGLAIVKAIALMHGGTVFVNSDKGVNTFGIQLPR
>LT985192.1|SPD80872.1|1466162_1466840_-|Transcriptional-activator-protein-CzcR
MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGFGVLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLENRSAG
>LT985192.1|SPD80873.1|1466850_1469955_-|Multidrug-resistance-protein-MdtB
MSGRGSVSAWCIDHPVATLLLTFALVLLGVIAFPRLPIAPLPEAEFPTIQVTAQLPGASPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADSPVLILSVSSSLIPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAALGLTLADIRLAVQQTSLNLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVAWVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQRELPRLQEMLPATVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHNPHQKPGFGERLLASYERGLRKALAHQRLMLGVFGLTLALAVVGYILIPKGFFPVQDTAFALGTTEAAADISYPDMVEKHLQLAKIVGADPAVLAFSHSVGVSGSNQTIANGRFWISLKPRSERDVSVSEFIDRLRPKLAKVPGIVLYLRAGQDINLSSGPSRSQYQYVLKSNDGELLNTWTQRLTEKLRSNPAFRDMSNDLQLGGSVTHIDIDRSAAARFGLTTADVDQALYDAFGQRQISEYQTEVNQYKVILELDAQQRGKAESLAYFYLRSPLTNEMVPLSALAKVSAPRMGPLSISHDGMFPAANLSFNLASGVALGDAVSMLDQAKKEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVDFALQAQREQGLSPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVSQMLTLFTTPVIYLQLERLFHKCHPAPAAPALALHK

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Crispr_ID: LT985192_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985192_2

1521438-1521547

Orphan

Consensus_repeat	Method
GGCATGCGACGCAGAGCGCCGCACGATAGTTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985192_2

>merge|LT985192|2|1521438-1521547|CRISPRCasFinder
GGCATGCGACGCAGAGCGCCGCACGATAGTTGCGGTTATCGTTCCCATGCTCCAGCGTGGTAACGCAGCCCGGAACGGCATGCGACGCGGAGCGCCGCACGATAGTTGCG

>LT985192|2|2|1521438-1521547|CRISPRCasFinder
GGCATGCGACGCAGAGCGCCGCACGATAGTTGCG	GTTATCGTTCCCATGCTCCAGCGTGGTAACGCAGCCCGGAAC
GGCATGCGACGCGGAGCGCCGCACGATAGTTGCG

Protein	Signature genes	Signature genes Name	Protein_function
LT985192.1\|SPD80920.1\|1513278_1515096_-\|Allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
LT985192.1\|SPD80924.1\|1517124_1518546_-\|putative-metabolite-transport-protein-YfiG	unknown	unknown	gnl\|CDD\|340917
LT985192.1\|SPD80928.1\|1521594_1521756_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314517
LT985192.1\|SPD80929.1\|1521822_1523568_-\|peptide-transporter	unknown	unknown	gnl\|CDD\|367370
LT985192.1\|SPD80925.1\|1518855_1520043_+\|Flavohemoprotein	unknown	unknown	gnl\|CDD\|237337
LT985192.1\|SPD80933.1\|1525127_1526081_-\|lipase	unknown	unknown	gnl\|CDD\|369561
LT985192.1\|SPD80936.1\|1528093_1529323_-\|putative-metabolite-transport-protein-NicT	unknown	unknown	gnl\|CDD\|340877
LT985192.1\|SPD80932.1\|1524798_1525086_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183233
LT985192.1\|SPD80935.1\|1527154_1528003_-\|putative-uncharacterized-transketolase-family-protein-y4mO	unknown	unknown	gnl\|CDD\|238970
LT985192.1\|SPD80919.1\|1512153_1513263_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380618
LT985192.1\|SPD80918.1\|1511034_1512144_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962
LT985192.1\|SPD80926.1\|1520131_1520548_+\|ester-cyclase	unknown	unknown	gnl\|CDD\|227772
LT985192.1\|SPD80922.1\|1515812_1516292_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
LT985192.1\|SPD80931.1\|1524226_1524724_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|379324
LT985192.1\|SPD80927.1\|1520675_1521302_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198298
LT985192.1\|SPD80930.1\|1523740_1524196_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|379326
LT985192.1\|SPD80937.1\|1529423_1530173_-\|putative-short-chain-type-dehydrogenase/reductase-y4mP	unknown	unknown	gnl\|CDD\|235546
LT985192.1\|SPD80923.1\|1516454_1517075_+\|lysine-transporter-LysE	unknown	unknown	gnl\|CDD\|224199
LT985192.1\|SPD80921.1\|1515333_1515714_-\|bleomycin-resistance-protein	unknown	unknown	gnl\|CDD\|319937
LT985192.1\|SPD80934.1\|1526138_1527158_-\|putative-uncharacterized-transketolase-family-protein-y4mN	unknown	unknown	gnl\|CDD\|226467

Protein	Function_ID	Function_description	E-value
LT985192.1\|SPD80920.1\|1513278_1515096_-\|Allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
LT985192.1\|SPD80924.1\|1517124_1518546_-\|putative-metabolite-transport-protein-YfiG	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.19799e-132
LT985192.1\|SPD80928.1\|1521594_1521756_-\|hypothetical-protein	gnl\|CDD\|314517	pfam11661, DUF2986, Protein of unknown function (DUF2986). This family of proteins has no known function.	9.50843e-06
LT985192.1\|SPD80929.1\|1521822_1523568_-\|peptide-transporter	gnl\|CDD\|367370	pfam03169, OPT, OPT oligopeptide transporter protein. The OPT family of oligopeptide transporters is distinct from the ABC pfam00005 and PTR pfam00854 transporter families. OPT transporters were first recognized in fungi (Candida albicans and Schizosaccharomyces pombe), but this alignment also includes orthologues from Arabidopsis thaliana. OPT transporters are thought to have 12-14 transmembrane domains and contain the following motif: SPYxEVRxxVxxxDDP.	1.58967e-93
LT985192.1\|SPD80925.1\|1518855_1520043_+\|Flavohemoprotein	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	0
LT985192.1\|SPD80933.1\|1525127_1526081_-\|lipase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	5.42617e-73
LT985192.1\|SPD80936.1\|1528093_1529323_-\|putative-metabolite-transport-protein-NicT	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.0087e-95
LT985192.1\|SPD80932.1\|1524798_1525086_-\|hypothetical-protein	gnl\|CDD\|183233	PRK11616, PRK11616, hypothetical protein; Provisional.	4.18751e-11
LT985192.1\|SPD80935.1\|1527154_1528003_-\|putative-uncharacterized-transketolase-family-protein-y4mO	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	3.86392e-120
LT985192.1\|SPD80919.1\|1512153_1513263_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380618	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type 1 periplasmic sugar-binding protein-like fold.	1.96538e-128
LT985192.1\|SPD80918.1\|1511034_1512144_-\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.94308e-74
LT985192.1\|SPD80926.1\|1520131_1520548_+\|ester-cyclase	gnl\|CDD\|227772	COG5485, COG5485, Predicted ester cyclase [General function prediction only].	1.85125e-53
LT985192.1\|SPD80922.1\|1515812_1516292_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.00872e-43
LT985192.1\|SPD80931.1\|1524226_1524724_-\|cell-division-protein-ZipA	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	8.1735e-31
LT985192.1\|SPD80927.1\|1520675_1521302_+\|glutathione-S-transferase	gnl\|CDD\|198298	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	7.73403e-40
LT985192.1\|SPD80930.1\|1523740_1524196_+\|acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.17195e-13
LT985192.1\|SPD80937.1\|1529423_1530173_-\|putative-short-chain-type-dehydrogenase/reductase-y4mP	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	2.8023e-87
LT985192.1\|SPD80923.1\|1516454_1517075_+\|lysine-transporter-LysE	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.50006e-27
LT985192.1\|SPD80921.1\|1515333_1515714_-\|bleomycin-resistance-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	5.33597e-32
LT985192.1\|SPD80934.1\|1526138_1527158_-\|putative-uncharacterized-transketolase-family-protein-y4mN	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	1.18222e-146

>LT985192.1|SPD80927.1|1520675_1521302_+|glutathione-S-transferase
MITVHHLNNSRSQRILWLLEELDLPYEIKRYQRDPKTNLAPPELKTVHPLGKSPVIEDGPHVVIESGAIVDYLIRRHGDGRLQPDPASATYDEYVQWLHFAEGSAILPLMLNLYVGRLGDAGAPLHPRIQSELANYLGYLNDSLGLTPYLLGEDLSGADIQMSFIGEFAKAQGMLQPYPNVTAWVERLQSRPAYRKALEQGGEYSFAK
>LT985192.1|SPD80926.1|1520131_1520548_+|ester-cyclase
MNLAEQYRAYIACLNERRWQDLGDFVDDDVQYNGERISVAGYRAMLENDVRIIPDLRFNIDLLVVEASQVAARLIFNCSPQGRFLGLDAHGQRITFSENVFYTFSDGKIVSVWSVIDKAAVERELRGEPAAGSSDRGT
>LT985192.1|SPD80925.1|1518855_1520043_+|Flavohemoprotein
MLSTAHRDIIKATVPILETGGEALSTHFYRIMLNDYPQVRPLFNQANQANGAQPRALANAVLMYARNIDRLENLGPLAAQIVNKHVALQILPEHYPIVGACLLRAIREVLGAEIATDAVIDAWAAAYQQLADMLINAERDVYESIAAAPGGWRGGRLFKVVRKVPESSEIMSFYLQPVDGKPVIAHKPGQYIGIRLNTEGGEIRRNYSLSAPANGVSYRISVKREQGGVASGYLHDQVAVDDTVELFPPSGEFVLIEGSKPLVLISGGVGITPTLAMAEAALQAGGRHVVFIHYARNARVQAFQAVIDDWRERYAQFAAHVVYSEATAGDVPANTVTGLASTEHLQQWLPEDTDVEAYFLGPKPFMVFIKRALHELGVPDRQSHYEFFGPAEALA
>LT985192.1|SPD80924.1|1517124_1518546_-|putative-metabolite-transport-protein-YfiG
MSSSSTSAAADPQGQQSASPNRLIFISVLVATMGALAFGYDTGIIAGALPFMTLPTDQGGLGLDAYSEGMITASLIVGAAFGSLASGYISDRFGRRLTLRLLSVLFIAGALGTAIAPSIPFMVAARFLLGIAVGGGSATVPVFIAEIAGPSRRARLVSRNELMIVSGQLLAYVLSAVMAALLHTPGIWRYMLAIAMVPGVLLLVGTFFVPPSPRWLASKGRFNEAQDVLEQLRTNKQDAQREVDEMKAQDEEARHRPKARELLRQGWVIKLLLIGIGLGFTAQLTGVNAFMYYTPIILKNTGMGTNAALTATIGNGVVSVIATLLGIWAIGRYGRRHLLMTGLVMVILMQAALGCVLQFMPQNLTQSYTALACILVFLLFMQMCISPVYWLLMSELFPMQVRGLLTGTAVSMQWLFNASVAFTFPIAVDTIGNPTFFIFAAINVGSLIFVFLCLPETKGKSLEQIEKHLKKEL
>LT985192.1|SPD80923.1|1516454_1517075_+|lysine-transporter-LysE
MLDLTQVLTYSAALGIAAAIPGPGMAALVARSVSGGALSGFCLLAGLILGDLTYLSFAVFGLAMIAEHFNALFQVVRWGAAIYLCYLAWQFWFADHQAIEIGKSAKKTELLSAAASGLTITLGNPKTIAFYLALLPLVIHLETVSLQTWGLVLVPLTVLVLLGVGAVFIFAALRIRHLLSSERAQRKLFRGAAAIMVAAAASMLVR
>LT985192.1|SPD80922.1|1515812_1516292_-|AsnC-family-transcriptional-regulator
MTSPTLSSIDMRILTALQQDGRITNQTLADQIGMSASPCWRRVKQLEEHRYVLGYRAVLDRRKIGLGVMVFIRVSIDSHSEAEARKFEQEVMQLENVVACYSIGGDADFLLQVVARDLDSFADFAMTVVRRLPGIKEMQSMFVLKEIKPFVSFPVKPAA
>LT985192.1|SPD80921.1|1515333_1515714_-|bleomycin-resistance-protein
MSTTEQATVTFDSAIPILRMFDERKAREFYLDFLGFSVEFEHRFEADLPLYLGISRNGLHLHLSEHHGDACPGAAVFIPTQNIEQLRDELLGKQYGYARPDIVQQGWGQVLEVCDPFGNRIRFCQS
>LT985192.1|SPD80920.1|1513278_1515096_-|Allophanate-hydrolase
MNTTMTALDISQLQSALRSGQTTLTALVQTLTAHIDADDRAEVWIHRVPVTQLLERAKTLESIAAEAGDSVYEQLPLFGVPFAVKDNFDVAGMPTTAACPAFAYTPKENAHVVQLLLDSGAILMGKTNLDQFATGLVGVRSPYGAVRNAQDPAYVSGGSSSGSAVAVARGYVSFALGTDTAGSGRVPAGFNGIVGLKPSLGLFSSRGVVPACRTLDCPSIFAGDVLQAWQVAQVIAAYDPLDPASVAVQALAVQRRARRVAVPRHCEFFGDAQAQTAYIKTLEALQSDPLVTIEPIDFDVFAEAAALLYQGPWVAERRAAVGRFFTTHADDIHQVVRGILQSAASFDAVDTFNARYRLAELTRTAQQLLTDIDVLVVPTAPCMPTIEAVLGNPVELNSQLGYYTNFVNLMNMCAIAIPADLRADGLPAGITLIGSAGTDQRLAEIAAAWQPLFGQADQRDAVAMAPLPYNSPTVQVAVVGAHLVGQPLNWQLLEGGARLLRTTTTSADYRLYALAATTPPKPGLVRVAEQGASIEIEVWEMPLSQFGAFVAAIPAPLGIGSLQLADGQWVKGFICEPGGLEGALDITDYKGWRAYRAAHTSSIAQ
>LT985192.1|SPD80919.1|1512153_1513263_-|ABC-transporter-substrate-binding-protein
MSNVDRRSFIKLAGIIGLSAALPFGRAYSADAPLVVGFIYVGARDDFGYNQAHAQAAAIIKTLPNVKVIEEENVPETVAVQKTMEAMIRQDGATLIFPTSFGYFEPHVVKVAKKYPDVRFAHCGGLWQKGKDPINAGSFFGYIDEAQYLNGVIAGHMSKSKKLGFVAAKPVPQVLRNLNAFAMGARSVDPSIVTTVIFTGDWSLPVKEAEAANGLIDQGCDVLTCHVDGPKVIVETAEKRGVMTCGYHASQAALAPKGYLTGAEWNWETPYRAHVAAAQSGAPMINFLRGGLKEGFVKTSAYGPSVTADAKQQADAIKAQMMAGQFVIFKGPLKDNKGAVVIADGVSQGQTDIALESMNYLVEGVLGQL
>LT985192.1|SPD80918.1|1511034_1512144_-|ABC-transporter-permease
MSLSISLRRLASALLPGLPTVLAVFSSCVLFGLFLAVQGKPAWQALQLVGEGAFGSWFALENTLQRAAPLMLTALCVALPARAGLIIIGGEGALVLGGLAAAVTPLWLGPLSPGVMLVCMALAAMSVGALWIGLSGWMRQRRGVNETISSLLLSYIALALFRQLVEGPLRDPASLNKPSTPPLDDAYRLGTISDGFEVHWGLVAGVVACLLAYVLVRHSIKGFALAVVGGNVRTALMIGLPVDRLILLSCLLGGAAAGLAGMFEVTAVQGSANAALIAGYGTSGILVAFAARHHPLAIIVCAILLGGLEASGGLLQRRLGLPDATTLILEGLLFTNLLLWEALGGRIAAWKIRLTASPASLDKGALQHG
>LT985192.1|SPD80928.1|1521594_1521756_-|hypothetical-protein
MNRRKKIQQLLKAHAKKASAKLAPQSKAKYISKADRLKLAAEADQDSISLSEG
>LT985192.1|SPD80929.1|1521822_1523568_-|peptide-transporter
MLSTSPSIPLASPVERELSLRAVITGVVLGILLTPSNVYAGLKIGWSFNMSIIALLIGYAIWQGLSKRSSAHLPWTLHESNINQTVASAAASIISGGLVAPIPAYTLLTGQQLDAVPMIAWVFSVSFLGIWIAWYLRPSLLNDKSLKFPEGMATLETLLHIYNHGREAAIRLKVLLSTALLSALAKWVDTFIWAFPRWSPSAQLERLTFTADPSLLLVGFGAIIGIRVGMTLLLGALLAWGGVGPWLLEQGLVILPADSSGPQFAALVEWLLWPGVSLMVCSTLASLVIRLWALHKSTRASGGTTWSMPKAGPAAGFVLAIILVVSLQALLFGINLWMALLTIPLAICLAAVAARVVGATGIPPIGAIGQLSQLSFGIVAPGQVPINLMSANTAGGSAGQCTDLMNDFKVGRAIGATPRKQLIAQTLGIFVGSIVGVLAYMALIPDPQSMLLTEEWPAPAVATWKAVAQTLTHGLDSLSASIRWAIFIGGLAGLLLGILDSTLPAHRTRYMPSAAALGLAFVLPASVSLMMALGAVLTWLVNCRWPSLTERFAITAAAGLIAGESITGVGASLWQMVGNVG
>LT985192.1|SPD80930.1|1523740_1524196_+|acetyltransferase
MTHVDIRKVIELPPQLLILEKEAVAQGFRFVTRLIDDWESGNNRFDAQGECLMGAFLNDDLVGIGGVSRDLRTQSNTGRLRRVYIAGSYRGQGIGRILVERLVSQASRHFRVLRLFTDTSSGSAFYARCGFQRVDEDDATHMKFLKEFASR
>LT985192.1|SPD80931.1|1524226_1524724_-|cell-division-protein-ZipA
MLATKLHLLCGKIASGKSTLAKSLAAEYSAILLSEDQWLSRLYPDEIKSVSDYVRLAHRIRDIIGPLVIDMLKSDICLVLDFPANTLADREWLLSLAEDAQVKHRLHYLDVEDDICLARLHARNEKADHDFAATDEQFKLITGYFCVPDTEEGLDILIHRRGFIK
>LT985192.1|SPD80932.1|1524798_1525086_-|hypothetical-protein
MFKQCLLLATAISLSGCWSLMYHLDGERCVYPGTRHGWAWCTKDVTSTWPWLIDVPFSLALDTLFLPYDLTAFLPENLGGDDRECHFNDGLNVLG
>LT985192.1|SPD80933.1|1525127_1526081_-|lipase
MNANELLDPAYHSFMDEPAGSWTHQTLPGIRARVGAAWTAATAARSEQHWTTGVSDVGIRLCLYRPGPPLEHPTPPVILYIHGGGFVLGSPEMADDYLAELAVELKAIIVAVDYRLAPEHPFPIPLEDCYAALEWIFSHGPTLGMNTGNLVIMGHSAGGGLAAALALLARNKGLRTLAGLVLIYPMLDHRTGAPDAPPANPTTGTFSWSRQANHFCWESLRGAYALDDDRKTLFSPALATDLSDLPPTFICVGALDLFLEEDLAFALTLSRSGVPVEMHVYPGVPHMFDQLPGEQTGQATQDIARAVRRMIAAGLCD
>LT985192.1|SPD80934.1|1526138_1527158_-|putative-uncharacterized-transketolase-family-protein-y4mN
MSSANNTSAPSVAPKKKLTTSAMIASIASEGQATRPAPFGHALAALAEQRQDIVGLSADLSKYTDLHIFAKAHPERFYQMGMAEQLLMSAAAGMAREGFVPFATTYAVFASRRAYDFICMAIAEDNLNVKIVCGLPGLTTGYGPSHQATDDLAIFRAMPNLMIVDPCDALEIEQAVPAIAAHQGPVYMRLLRGNVPLVLDEYGYTFEIGKAKTLRTGNDVLIISTGLMTMRALEAAKALQADGVDVAVLHVPTIKPLDEQTILAEARKPGRLVMTAENHSIIGGLGEAVATVLLRNGVTPTFRQIALPDAFLDAGALPTLHDRYGISTPAVCTQIKAWL
>LT985192.1|SPD80935.1|1527154_1528003_-|putative-uncharacterized-transketolase-family-protein-y4mO
MTATTLSAPSTSLAQRAHNIRRHALRMGQVQGQGYVGQALGAADLLAVSYFHALNYRPEDPEWEQRDRFYLSIGHYAIALYAALIEAEIVPLDELETYGSDDSRLPMSGMATYTPGMEITGGSLGHGLGIAVGACLGLKRKASRSFVYNLLSDGELNEGSTWEAAMSASHWKLDNLIAIVDVNNQQADGHSSEVLAFEPIVDRWQAFGWFTQRVDGNDLNALVAAFDAARQHVGAQPRVIICDTKMGKGVAFLETREKTHFIRVDEHEWDVALNNLDEGKTV
>LT985192.1|SPD80936.1|1528093_1529323_-|putative-metabolite-transport-protein-NicT
MITTMTLDAVSTTRANAYRKTAWRLMPFLMLCYLCAYLDRVNVGFAKLQMMNDLSFSETVYGLGAGMFFIGYFLCEVPSNLILHRVGARRWIARIMISWGIISALFAFVETAWQFYALRFLLGVAEAGLAPGLLLYLTYWFPSYRRARMTVLWFIAIPLSGMIGGPLSGYIMNRFAGVHGWAGWQWMFVLEAIPTVIVGLLVLSYLKDGVHQATWLSAEEKELVNKELQEDNSQKVVHASVGAFIRDKRLWLLACIYFCVVMGQYAITFWLPTLIRNAGVSDPLHIGLMTSLPYLCAIVVMLLMGRSGDKHRERRWHLVGPMIAGALGLSLAALFGGNLLLSVLSLCLAAAGILSASSLFWMLPTTLLGGVSAAAGIAGINSFANLAGFCSPYLIGWITTTTGSSAIGM
>LT985192.1|SPD80937.1|1529423_1530173_-|putative-short-chain-type-dehydrogenase/reductase-y4mP
MLLQGKIAVITGAASERGIGRATAVTFARHGARVVIIDLDESAARDAAAALGEGHLGLAANVADEKQVHEAVSKIIAHYGRIDILVNNAGITQPIKTLDIRPGDYDKVLDVSLRGTLLMSQAVIPTMRAQSSGSIVCMSSVSAQRGGGIFGGPHYSAAKAGVLGLGKAMAREFGPDQVRVNSIAPGLIHTDITGGLMQDERRHAIIDGIPLGRLGAAQDVANAALFLASDLSSYLTGITLDVNGGMLIH

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Crispr_ID: LT985192_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985192_3

2564365-2564488

Orphan

Consensus_repeat	Method
ACGCGGAGCGTGAGGAACGAGCGGCGTCTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985192_3

>merge|LT985192|3|2564365-2564488|CRISPRCasFinder
ACGCGGAGCGTGAGGAACGAGCGGCGTCTGGGATAACAAAGGTGACCTGAGTCGAACGTCAATCCACCTGAAACCACAGAACCGCTTTGTGACGCGGAGCGTGAGGAACGAGAGGCGTCTGGGA

>LT985192|3|3|2564365-2564488|CRISPRCasFinder
ACGCGGAGCGTGAGGAACGAGCGGCGTCTGGGA	TAACAAAGGTGACCTGAGTCGAACGTCAATCCACCTGAAACCACAGAACCGCTTTGTG
ACGCGGAGCGTGAGGAACGAGAGGCGTCTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
LT985192.1\|SPD81844.1\|2566527_2568435_+\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|225726
LT985192.1\|SPD81848.1\|2571223_2571448_-\|putative-secreted-protein	unknown	unknown	gnl\|CDD\|380215
LT985192.1\|SPD81846.1\|2569217_2570072_-\|Shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|183586
LT985192.1\|SPD81837.1\|2557477_2558080_+\|Protocatechuate-3,4-dioxygenase-alpha-chain	unknown	unknown	gnl\|CDD\|274126
LT985192.1\|SPD81833.1\|2554268_2555339_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
LT985192.1\|SPD81847.1\|2570256_2571147_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
LT985192.1\|SPD81838.1\|2558166_2559516_+\|4-hydroxybenzoate-transporter-PcaK	unknown	unknown	gnl\|CDD\|273327
LT985192.1\|SPD81842.1\|2563066_2563954_+\|membrane-protein	unknown	unknown	gnl\|CDD\|223769
LT985192.1\|SPD81839.1\|2559540_2560902_+\|3-carboxy-cis,cis-muconate-cycloisomerase	unknown	unknown	gnl\|CDD\|181627
LT985192.1\|SPD81849.1\|2571545_2572151_-\|Molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
LT985192.1\|SPD81840.1\|2560898_2561297_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
LT985192.1\|SPD81845.1\|2568542_2569214_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
LT985192.1\|SPD81835.1\|2555691_2556621_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274127
LT985192.1\|SPD81851.1\|2572772_2573984_+\|Molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
LT985192.1\|SPD81841.1\|2561549_2562806_-\|Porin-like-protein-GalP	unknown	unknown	gnl\|CDD\|335381
LT985192.1\|SPD81834.1\|2555396_2555639_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368604
LT985192.1\|SPD81852.1\|2574071_2574998_+\|O-antigen-biosynthesis-rhamnosyltransferase-RfbN	unknown	unknown	gnl\|CDD\|366154
LT985192.1\|SPD81850.1\|2572226_2572766_+\|Molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
LT985192.1\|SPD81843.1\|2564581_2565910_-\|membrane-protein	unknown	unknown	gnl\|CDD\|340877
LT985192.1\|SPD81836.1\|2556746_2557466_+\|Protocatechuate-3,4-dioxygenase-beta-chain	unknown	unknown	gnl\|CDD\|131475

Protein	Function_ID	Function_description	E-value
LT985192.1\|SPD81844.1\|2566527_2568435_+\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	7.67777e-139
LT985192.1\|SPD81848.1\|2571223_2571448_-\|putative-secreted-protein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	1.38937e-32
LT985192.1\|SPD81846.1\|2569217_2570072_-\|Shikimate-dehydrogenase	gnl\|CDD\|183586	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.	0
LT985192.1\|SPD81837.1\|2557477_2558080_+\|Protocatechuate-3,4-dioxygenase-alpha-chain	gnl\|CDD\|274126	TIGR02423, Protocatechuate_34-dioxygenase_alpha_chain, protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA. [Energy metabolism, Other].	6.46805e-89
LT985192.1\|SPD81833.1\|2554268_2555339_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.16945e-26
LT985192.1\|SPD81847.1\|2570256_2571147_+\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	1.89417e-123
LT985192.1\|SPD81838.1\|2558166_2559516_+\|4-hydroxybenzoate-transporter-PcaK	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.88236e-147
LT985192.1\|SPD81842.1\|2563066_2563954_+\|membrane-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	6.57277e-12
LT985192.1\|SPD81839.1\|2559540_2560902_+\|3-carboxy-cis,cis-muconate-cycloisomerase	gnl\|CDD\|181627	PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional.	0
LT985192.1\|SPD81849.1\|2571545_2572151_-\|Molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.23227e-81
LT985192.1\|SPD81840.1\|2560898_2561297_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	1.94089e-67
LT985192.1\|SPD81845.1\|2568542_2569214_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	1.26575e-57
LT985192.1\|SPD81835.1\|2555691_2556621_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|274127	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria. [Energy metabolism, Other, Regulatory functions, DNA interactions].	2.48521e-146
LT985192.1\|SPD81851.1\|2572772_2573984_+\|Molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	2.86557e-161
LT985192.1\|SPD81841.1\|2561549_2562806_-\|Porin-like-protein-GalP	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0
LT985192.1\|SPD81834.1\|2555396_2555639_+\|hypothetical-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	1.2394e-18
LT985192.1\|SPD81852.1\|2574071_2574998_+\|O-antigen-biosynthesis-rhamnosyltransferase-RfbN	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	3.36095e-15
LT985192.1\|SPD81850.1\|2572226_2572766_+\|Molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	3.56886e-104
LT985192.1\|SPD81843.1\|2564581_2565910_-\|membrane-protein	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.44869e-88
LT985192.1\|SPD81836.1\|2556746_2557466_+\|Protocatechuate-3,4-dioxygenase-beta-chain	gnl\|CDD\|131475	TIGR02422, Protocatechuate_34-dioxygenase_beta_chain, protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA. [Energy metabolism, Other].	5.39393e-136

>LT985192.1|SPD81842.1|2563066_2563954_+|membrane-protein
MSTASTPLSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMACIFMPSAGLRVLRTKRPGLQALRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTALSVPLLHERVTRGQWVAVVVGFIGVMIIIHPGGELFTPAILLPLSSALCFALYQLLTRLVSPFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFAAPAMLAPFSYCQIVFAGLLGFVVFDHMPSPTAQAGIAIICLSGLAAAWQQRRKGG
>LT985192.1|SPD81841.1|2561549_2562806_-|Porin-like-protein-GalP
MRANSSCKLLCGLSAAIAANLTPISGNAAGFVEDTKVNLNLRNFYINRNFVDPANAQNYAEEWTQNFILDARSGFTQGTVGFGVDALGLYSLKLDGGKGTGGTQLLPIHSDGRPADDFGRLAVAGKARFSKTELKVGEWMPVLPILRSDDGRSLPQTFQGGQITSKEIDGLTLYGGQFRGNSPRNDASMEDMSLNGRSAFTSDRFNFGGGEYVFNEKRTQVGVWYAELEDIYHQQYFNLLHSQPLGSWTLGANLGYFQGKDDGQSLAGDLDNKTWSAMLSARHGGNTFYLGLQKVSGDSAWMRVNGTSGGTLANDSYNSSFDNAREKSWQLRHDYDFAALGAPGLTLMNRYISGDNVHTGAITDGEEWARETELAYVFQSGAFKSLSLKWRNSTMRRDYNTNQFDENRLIVSYPLSLL
>LT985192.1|SPD81840.1|2560898_2561297_+|4-carboxymuconolactone-decarboxylase
MTEDERYEAGMQVRRAVLGDAHVDNSLSKLTPFNEEFQEMITRHAWGDIWTRPGLPRHTRSLITIAMLIGMNREGELRLHLKAAKNNGVTREEIKEVLMQSAIYCGIPAANATFHLAETVWDEMGVESLKED
>LT985192.1|SPD81839.1|2559540_2560902_+|3-carboxy-cis,cis-muconate-cycloisomerase
MNRVSNQLFDAYFMQPEMREIFSDEGRVQGMLDFEAALARAQARVGLIPPELVADIELSCDARLFDFDALAIAIGSAGNSAIPLVKALGKQIAASSAEAERYVHMGATSQDVMDSGLILQLRRAIVLLERDLTLLADAMAEQAQRHAGTPLAGRTWLQQATPVTLGMKIAGWLGAVTRHRQRLNEIKPRLLCLQFGGASGSLAALGDQAFSVAEALAGELQLALPEQPWHTQRDRLVEFAGLLGLIAGSLGKLGRDVSLLMQTEVGEVFEPSAPGKGGSSTMPHKRNPVGAAVMISTATRAPGLVATMLAAMPQEHERSLGLWHAEWETLPELCCLVSGSLQQALQVLPGLQVDAERMASNLQSTKGLVLAEAVSISLAQRIGRDAAHHLVEQCCRRAVEQGAHLRQVLGETPQVSEQFSSDELDRLLDPAHYLGQARQWVERAVAEHTRISR
>LT985192.1|SPD81838.1|2558166_2559516_+|4-hydroxybenzoate-transporter-PcaK
MTLSASRPVPCTLDVQAFINAQPLSGYQWRVVALCFLIVFLDGLDTAAMGFIAPALSQDWGIDRASLGPVMSAALIGMVFGALGSGPLADRFGRKVVLVFAVFLFGLFSLASAYSSNIDQLLVLRLLTGLGLGAAMPNATTLLSEYTPERLKSLLVTSMFCGFNLGMACGGFVSAKLIPSMGWHSLLMLGGILPLILAMVLMVWLPESARFLVVRNRGAERIRKVLAPIAPKALAGITDFSVPEQKTVSSRNVLKVIFSGTYSAGTLLLWLTYFMGLVIVYLLTSWLPTLMRDSGASMEQSAFIGALFQFGGVLSAVGVGWAMDRYNPHKVIGLAYALAGVFAWLVGQSLGNVALLATLVLLAGMCINGAQSAMPSLAARFYPTQGRATGVSWMLGIGRFGAILGAWAGATLLGLGWSFEQVLTALVVPAALAAIAVLIKGWVSHSDAT
>LT985192.1|SPD81837.1|2557477_2558080_+|Protocatechuate-3,4-dioxygenase-alpha-chain
MPVQLLQETPSQTAGPYVHIGLAPQVAGNPTRELEIWNEMARPDAPGEHIVLLGNVFDGNGHLIRDAYLEFWQADHQGAYHSEFDPERPFNGFGRTATTDDGQWILKTIKPGSAHNAAGVPMAAHINVSLFARGINIHLQTRLYFDDEAQANAQDPVLNLIEQPPRRETLVARRCTHDGQTAYRFDIRVQGEGETVFFDF
>LT985192.1|SPD81836.1|2556746_2557466_+|Protocatechuate-3,4-dioxygenase-beta-chain
MSAADNSRFVIRDRNWHPKALTPDYKTSILRSPRQALVSIPQSISETTGPDFSHLKFGQHDNDLLLNFNNGGLPIGERILLAGRVCDQYGKPIPHTLVEIWQANAGGRYRHKRDAYLAPIDPNFGGVGRALTDSEGNYSFRTVKPGPYPWRNGPNDWRPAHIHVSISGPSIATRLVTQLYFEGDPLIPICPIVKAIANPDAVQSLIARLDLGMGNPMDCLAYRFDIVLRGQRKTHFENC
>LT985192.1|SPD81835.1|2555691_2556621_+|LysR-family-transcriptional-regulator
MNIDTRIKFRHLVCFLEVARQGSLARASDVLAISQPALSKSLKELETLLATTLFVRSKSGAALTEAGVAFMRFAGPSVQALREGVSSLRSGEHETVTARLGVLSTAESLLVPEVVHRLHERHPALIVSVMTGPSAYLLSQLRVGELDLVVGRMTDSPQIQGLTFEHLYNESMTLVVRNDHPLLTAPLKPESLEQFPLVLPLAGTTIRKFADSLFVQCGIRMPRQRLETLSLTLSRRYVQCSDAVWIAPLDAVSLELKGGTLVELDMGIREPGGSVGLCSNPALPLTRAAQWCVDELRGVGETYRKAQYA
>LT985192.1|SPD81834.1|2555396_2555639_+|hypothetical-protein
MPPECQLFSTLGCPLCEVAEAVLLPFAIEHGLLVELVDICEDEQLFERYELRVPVLRRVDTGDELDWPFDAPQVASFLSR
>LT985192.1|SPD81833.1|2554268_2555339_+|acyltransferase
MERLYSLQGLRGIAVLGVVLFHMMSVESKFSGGDILLPPLLDFFQLGVDLFFVISGFVMVIVSRGRFQSGVEARRFLFNRVSRIYPTYWLYFFITLAVYLVQPGMVNSGHGASNLIMSFLLLPNDKVLLVMVAWSLLFELWFYVVYSGFLLFRERSVPLLLGGWALIIIVFNVLADWQDYSPALKIILHPYALEFILGAALALFFYGRHSARVPTAAVLASLGGALLLGVPLIGYFRLYDSQGLLRMLMVGGTFGLLVLTLALLERRRQLAVPGFLVAVGDMSYTIYLSHLLVLGVIGRLWSLVGAWPESYLDNLFFALLMMAATVCYGWVGYRCFEKPVLDRANAFSKTHFRVST
>LT985192.1|SPD81843.1|2564581_2565910_-|membrane-protein
MLNTQTNPVAQAARAGMGEKIRGALAVGKTRWGMLALVFFATTLNYIDRAALGVMQPILAKEMSWTAMDYANINFWFQVGYAVGFVLQGRFIDKVGVKRAFFLAVLLWSLATGAHGLATSAVGFMVCRFILGLTEAANYPACVKTTRLWFPAGERAVATGIFNAGTNVGAMLTPALLPLILTVWGWQAAFIAMGSLGLIWVIMWRLKYYNPEEHPTVSKAELDYINQEVEPAPVKVPFTGILKMRGTWAFALAYAITAPVFWFYLYWLPPFLNQQYNLGISVTQMGIPLILIWLTADFGSVGGGILSSWLIGRGMRATTARLLSMLIFAITICSVVFAANASGLWVAVLAISLAVGAHQAWTANIWSLVMDYTPKHMMSTVFGFGGMCAAIGGMFMTQIVGAVLTATNNNYNVLFTMIPAMYFIALIWLYFMAPRKVPTLSE
>LT985192.1|SPD81844.1|2566527_2568435_+|4-hydroxyphenylpyruvate-dioxygenase
MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLYYDGSPRNVRQICADLGIAITLFQPFRDFEGCRRDRLQRNVDRAERKFDLMQELGTDLVLVCSNASADSVGDENILLDDLSLLAERAGARNLRVGYEALAWGKHVNTWQQVWNLVRQVDHPALGVLLDSFHTLSLKGDPSAIAQIPGDKIFFVQMADAPILAMDVLEWSRHFRCFPGQGEFDLAGFLAPILRSGYTGPLSLEVFNDGFRAAPTRANAADGLRSLLYLEEKTRQLMARDEPAAVPEILFNPPAASTYNGVEFLEFAVDESHGARLSGWLQRLGFARLGQHRSKAVSLLGQGDIKIVLNAEPYSFAHSFFEAHGPSLCATALRVDDGHQSLERARAFKGQPYRGLVGPNEREIPSVRAPDGSLIYLVDSAGPGESIYDSDFVVDPQAVAKGGLQRIDHMAMALPADSLDSWVLFYKSILDFEADDEVVLPDPYGLVKSRALRSRCSTVRLPLNISENRNTAISHALSSYRGSGVHHIAFSCEDIFAEVSRAKEAGVPLLDIPLNYYDDLAARFDFDEEFLSELAYYNVLYDRDAQGGELFHVYTDAFDGRFFFEILQRKNGYVGYGAANVPVRLAAMAKARNVAARQARL
>LT985192.1|SPD81845.1|2568542_2569214_+|TetR-family-transcriptional-regulator
MKKIDSAVAVEPAATVPKGRKNNPEKTREDILQAAVAEFVAHGLTGARVDAIAERTKTSKRMIYYYFGSKEQLYVEVLEKLYGAIRNTESELNLSELEPVEAIHRVVEFTFDHHDSNVDFVRIVCIENIHYGENVKQSDSIQAKSQNIIRALDGILRRGEASGLFRDGVHPVDLHLMISSFCFYRISNRHTFSEIFQIELWSEEVKQRHKAMICDAVLRYLKR
>LT985192.1|SPD81846.1|2569217_2570072_-|Shikimate-dehydrogenase
MTHAEKKSVLAGLIGSGIQASRTPAMHEQEGDAQGLRYLYRLIDIDALQLDISALPQLIESAQNCGFTGLNITFPCKQAVIPLLDELSAEARGIGAVNTVVFKDGKRIGHNTDCLGFAEGFQRGLDKAPRQQVVQMGAGGAGAAVAHALLSAGVECLTVFEVEPQRAQGLVDNLNEHFGAGRAKVGIDLPAAMAEADGLVNTTPVGMAKLPGTPLPVELLRPELWVAEIIYFPLETELLKHARALGCRTLDGSTMAVFQAVKAFDLFSGQSADAERMMAHFHTL
>LT985192.1|SPD81847.1|2570256_2571147_+|pseudouridine-synthase
MPDSVFSAAQQQASTLYLPPGAWATVLDCLCAKFTAISREQWLDRIARGRVLDENGKAIAPDLAYREGLRIHYFREVPNETPIPVLETILYADEHLVVADKPHFLPVTPAGEYVEQTLLRRLIHRLGNPDLVPLHRIDRHTAGLVLFSANRQTRSAYQALFPTRQIDKFYEAIAPALPGLEFPRLHESRLVEGEPFFRMQEGAGASNTRTQIEVLERQDQLWRYGLYPVTGKKHQLRVHMAALGAGICNDPFYPDVVKNPVDDYQNPLKLLAKGLRFIDPLSGKQRQFESLLELDW
>LT985192.1|SPD81848.1|2571223_2571448_-|putative-secreted-protein
MKQRTLPAAFLLALSIASLAGCASPTVITLNDGREIQAVDTPKYDEESGFYEFKQLDGKQTRINKDQVRTVKDL
>LT985192.1|SPD81849.1|2571545_2572151_-|Molybdenum-cofactor-guanylyltransferase
MNVPAALPPCSILLLAGGRGQRMGGRDKGLIEWQGKALIEHLHRLTRPLTDDLIISCNRNIERYAQYADQLVQDDDADFNGPLAGIRAALPLARHQWLLVLPCDVPLVDEPLLQALREKAVECPERPIMVREGQHWQPLLCMIPIAHAATLEAAWQAGERSPRRALEPLQPVALQLEAGDPRLANLNTPCLLTGISENCGK
>LT985192.1|SPD81850.1|2572226_2572766_+|Molybdenum-cofactor-biosynthesis-protein-B
MKAKADTPFVPLNIAVLTVSDTRTRETDTSGQMFVDRLTDAGHGLIERVLLKDDLYKIRAQVATWIADDQVQVVLITGGTGFTGRDSTPEAVACLLDKQVDGFGELFRQISVPDIGTSTIQSRALAGLSNGTLVCCLPGSTNAVRTAWDGILAQQLDSRFRPCNFVPHLKQAEPCATRG
>LT985192.1|SPD81851.1|2572772_2573984_+|Molybdopterin-molybdenumtransferase
MNNEPKTLLPVEEAIARLLAMAEATPITDRQRAPLADAEGRVLAVDLISTLDLPPWPNSAMDGYALRVADWSGEPLNVSQRIFAGQAPEPLAPGTCARIFTGAPMPEGADCVEMQENAEVLADQRVCFSEPLSVGQNIRPQGQETRVGDTVLAAGTRLGPIELGLAASLGLAELEVIRRVRVAVLSTGDELIEPGQPLGPGQIYNSNRVLLCSWLKRLECEVVDAGILPDDLAKTRTALANLHDVDLILSTGGVSVGEADFLGHALRKEGELTLWKLAIKPGKPLTFGHFRGVPVIGLPGNPASTLVTFALLARAYLLRRQGVIDVAPLQFPVPAGFVWTRPGNRREYLRGRLEQGRAVAYRNQSSGVLRSAAWADGLIEVREGSTVAEGDWVNFIPLSEVLG
>LT985192.1|SPD81852.1|2574071_2574998_+|O-antigen-biosynthesis-rhamnosyltransferase-RfbN
MAPLRVACVIPTYNGRKDLERLLDSLATQTASFDTLIVDSSSSDGTLELAQARCANVLRIDSKDFNHGGTRQMMVDLHPDYDVYVYLTQDAYVEDINAIANILLPFADPKVGAVCGRQLPHKNANLLAQHARLFNYPPTSQIKTLADARTLGIKTPFMSNSFAAYRGEALRAIGGFPRHVILSEDMYVTAKMLIDGWKAAYEGSAVCRHSHNYSLREEFCRYFDIGVFQSREAWIYETFGGIGGEGMRYVKSELKFLGPRRILWWPMSFVRNALKLLAYKLSKQEKRLPRGVKKKLGMYKRYWDSPYA

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Crispr_ID: LT985192_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985192_4

3971143-3971226

Orphan

Consensus_repeat	Method
CGACGCAGAGCGACGCACGATAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985192_4

>merge|LT985192|4|3971143-3971226|CRISPRCasFinder
CGACGCAGAGCGACGCACGATAGTTGCGATGATCGTTCCTCACGCTCCCGAACGGCATGACGACGCGGAGCGACGCACGATAGT

>LT985192|4|4|3971143-3971226|CRISPRCasFinder
CGACGCAGAGCGACGCACGATAGT	TGCGATGATCGTTCCTCACGCTCCCGAACGGCATGA
CGACGCGGAGCGACGCACGATAGT

Protein	Signature genes	Signature genes Name	Protein_function
LT985192.1\|SPD83146.1\|3962108_3962798_+\|Transcriptional-activator-protein-CzcR	unknown	unknown	gnl\|CDD\|130454
LT985192.1\|SPD83164.1\|3980752_3981289_-\|flavin-reductase	unknown	unknown	gnl\|CDD\|214900
LT985192.1\|SPD83156.1\|3972296_3972662_-\|muconolactone-delta-isomerase	unknown	unknown	gnl\|CDD\|213786
LT985192.1\|SPD83153.1\|3969028_3970462_+\|RND-transporter	unknown	unknown	gnl\|CDD\|273830
LT985192.1\|SPD83148.1\|3964184_3964853_-\|alginate-lyase	unknown	unknown	gnl\|CDD\|378049
LT985192.1\|SPD83163.1\|3979776_3980712_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226763
LT985192.1\|SPD83147.1\|3962776_3964165_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|273593
LT985192.1\|SPD83145.1\|3961333_3961939_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83162.1\|3978139_3979693_-\|aerotaxis-receptor-Aer	unknown	unknown	gnl\|CDD\|214599
LT985192.1\|SPD83160.1\|3975356_3976760_-\|Anthranilate-1,2-dioxygenase-large-subunit	unknown	unknown	gnl\|CDD\|132272
LT985192.1\|SPD83155.1\|3971329_3972235_-\|Catechol-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|239543
LT985192.1\|SPD83154.1\|3970482_3971028_-\|Ribosomal-protein-alanine-acetyltransferase	unknown	unknown	gnl\|CDD\|182749
LT985192.1\|SPD83159.1\|3974844_3975354_-\|Anthranilate-1,2-dioxygenase-small-subunit	unknown	unknown	gnl\|CDD\|132275
LT985192.1\|SPD83149.1\|3965408_3965861_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179596
LT985192.1\|SPD83152.1\|3968147_3969032_+\|membrane-protein	unknown	unknown	gnl\|CDD\|182548
LT985192.1\|SPD83150.1\|3965857_3967945_+\|fusaric-acid-resistance-protein	unknown	unknown	gnl\|CDD\|377393
LT985192.1\|SPD83157.1\|3972627_3973749_-\|Muconate-cycloisomerase-1	unknown	unknown	gnl\|CDD\|239434
LT985192.1\|SPD83151.1\|3967941_3968151_+\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|377931
LT985192.1\|SPD83158.1\|3973806_3974829_-\|Anthranilate-1,2-dioxygenase-electron-transfer-component	unknown	unknown	gnl\|CDD\|183350
LT985192.1\|SPD83161.1\|3976968_3977979_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|373110

Protein	Function_ID	Function_description	E-value
LT985192.1\|SPD83146.1\|3962108_3962798_+\|Transcriptional-activator-protein-CzcR	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	1.6578e-105
LT985192.1\|SPD83164.1\|3980752_3981289_-\|flavin-reductase	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	2.34285e-54
LT985192.1\|SPD83153.1\|3969028_3970462_+\|RND-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.36921e-67
LT985192.1\|SPD83148.1\|3964184_3964853_-\|alginate-lyase	gnl\|CDD\|378049	pfam08787, Alginate_lyase2, Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426.	7.60161e-73
LT985192.1\|SPD83163.1\|3979776_3980712_-\|hypothetical-protein	gnl\|CDD\|226763	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion].	3.22953e-83
LT985192.1\|SPD83147.1\|3962776_3964165_+\|histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	1.44758e-136
LT985192.1\|SPD83156.1\|3972296_3972662_-\|muconolactone-delta-isomerase	gnl\|CDD\|213786	TIGR03221, muco_delta, muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol. [Energy metabolism, Other].	1.95025e-49
LT985192.1\|SPD83162.1\|3978139_3979693_-\|aerotaxis-receptor-Aer	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.20271e-55
LT985192.1\|SPD83160.1\|3975356_3976760_-\|Anthranilate-1,2-dioxygenase-large-subunit	gnl\|CDD\|132272	TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases. [Energy metabolism, Amino acids and amines].	0
LT985192.1\|SPD83155.1\|3971329_3972235_-\|Catechol-1,2-dioxygenase	gnl\|CDD\|239543	cd03460, 1,2-CTD, Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.	1.71779e-163
LT985192.1\|SPD83154.1\|3970482_3971028_-\|Ribosomal-protein-alanine-acetyltransferase	gnl\|CDD\|182749	PRK10809, PRK10809, 30S ribosomal protein S5 alanine N-acetyltransferase.	4.20133e-51
LT985192.1\|SPD83159.1\|3974844_3975354_-\|Anthranilate-1,2-dioxygenase-small-subunit	gnl\|CDD\|132275	TIGR03231, anthran_1_2_B, anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases. [Energy metabolism, Amino acids and amines].	3.37878e-89
LT985192.1\|SPD83149.1\|3965408_3965861_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|179596	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional.	1.27228e-16
LT985192.1\|SPD83152.1\|3968147_3969032_+\|membrane-protein	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	8.33074e-75
LT985192.1\|SPD83150.1\|3965857_3967945_+\|fusaric-acid-resistance-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	9.99642e-174
LT985192.1\|SPD83157.1\|3972627_3973749_-\|Muconate-cycloisomerase-1	gnl\|CDD\|239434	cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.	0
LT985192.1\|SPD83151.1\|3967941_3968151_+\|putative-membrane-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	8.39455e-12
LT985192.1\|SPD83158.1\|3973806_3974829_-\|Anthranilate-1,2-dioxygenase-electron-transfer-component	gnl\|CDD\|183350	PRK11872, antC, anthranilate 1,2-dioxygenase electron transfer component AntC.	0
LT985192.1\|SPD83161.1\|3976968_3977979_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|373110	pfam14525, AraC_binding_2, AraC-binding-like domain. This domain is related to the AraC ligand binding domain pfam02311.	1.44887e-27

>LT985192.1|SPD83154.1|3970482_3971028_-|Ribosomal-protein-alanine-acetyltransferase
MQYSGEGFSIRVLAFDDCELINRYEKANRKHLQPWEPLRDDDYFILENARSRVQQQWESMQSGSAIFFLVTEPDGGELLGRCSYTNIVRGVFQACNLGFSLAEAAQGRGLMQRALEVGNRYCFEQMGLHRIMASHMPANVRSERLLQSLGFEKEGYARAYLKIAGVWEDHVLRALINPNEA
>LT985192.1|SPD83153.1|3969028_3970462_+|RND-transporter
MKRALRMAALGFTAVLSACQVVGPDYQLPKDGAINRPDLQGELAGRSVNTVSAPVPAHWWRLYQDARLDELVRQAIASNTDLRIAAANLQRARYQTSEAEAAGGFTNGAKIGAQRVQESGEAFLLTDKVPVANVGDVGLTTSYQFDLFGTLQRGIEAAQANVDANQAAVDTARITVVADVVRAYTQICAANEELDIARESLDLQQQSVTLNQRLRDAGRGDETQVTRSQTQFKSLRAEMPRYEARRQAAMFRLSMLLAKPVEQLPAGVSSCNALPHIAQVMPVGDGATLLKRRPDVRQAERHLAMSTAQIGVATGELYPDISIGASIGTTGLIENLGKPAANRWGFGPLLNWTIPSNGSRARIHQAEASAQAAMARFDGVVLNAIRETQTGLAQYTALLDRRDALKEAEQSAKEAADQTHRFYQAGRASFLADLQATRTYTDVRAQMAEANTQVAMGQINLFLALGGGWEKDDVPQK
>LT985192.1|SPD83152.1|3968147_3969032_+|membrane-protein
MKKPILTLGRVVLTLLVVTLAAVVVWRMVMYYMYAPWTRDGHIRADIVQIAPDVSGLIQKVEVTDNQPVHKGQVLFTIDQDRFRLALRQAQATVAERQETWEQARRENRRNRGLGNLVAREQLEESQSREARALSALGESKVAVDAAQLNLDRSVIRSPVDGYLNDRAPRDHEFVTAGRPVLSVVDAASFHIDGYFEETKLDGIHVGQGVDIRVIGDNARLTGHVVSIVAGIEDRDRSSGSNLLPNVNPAFSWVRLAQRIPVRIAFDDVPADFRMIAGRTATVSIIDDTQEGTR
>LT985192.1|SPD83151.1|3967941_3968151_+|putative-membrane-protein
MIGDLDISGIFIPTFLAMMGIAYLLFLAVHALLSRAHFYRLVWHRALFNVGLYALLLGAVDTLSRYLMT
>LT985192.1|SPD83150.1|3965857_3967945_+|fusaric-acid-resistance-protein
MNGFFSSVPPARDWFYGVRTFGASMLALYIALLMEMPRPYWAMATVYIVSSPFVGPTSSKALYRAAGTLAGAAASVLLVPMFVQTPLLLAIVVGLWTGTLLFLSLHLRTANSYALMLAGYTMPLISLPVVDNPQAVFDIAVSRTEEIFLGIICAAVVGAMFWPRRLAPVFQATTEKWFSDASTYSQRFISRTCQPEEIGALRNSMVGSFNSLEMMIGQLSHEGARKQTVRNANELRGRMIHLLPVIDALDDALWALERRTPELLASLKPVLQKACDWLESTADGPQREQWQQLHDELERLQPNSTQLDDRDQLLLSNTLFRLGEWIDLWLDCRTLQYAIKTDDQSPWRAVYRHWRLGRLTPFLDRGLMLYSVTSTVLAIIAASVLWILLGWKDGASAVALAAVSCSFFAAMDDPAPQIYRFFFWTLLSVVFASLYLFVVLPNLHDFPMLVLAFAVPFICVGTLTVQPRFFLGTLLTIVNTSSFISIQSAYDADFMNFLNSNLAGPAGLLFAFIWTLVFRPFGVELAVKRLTRFSWRDIASLSEDASLAEHRRMGVQMLDRLMQQLPRLTLTAQDTGIALRELRVALNMLDLLAYTRRATPAAQVLLRQVIDEVSGYFKHCRKAGERLPAPRGLLMAMDRARRSLTAQEMGDNPARLHLLHALSGLRLALLPGVEIVTVGGELTEQLPHNIDGAPL
>LT985192.1|SPD83149.1|3965408_3965861_+|MarR-family-transcriptional-regulator
MLVDPLHRAVSSGLVAASRQWRRICQNTLVTYEISEACAGPLLAIARLGDGVHQVKVAQAAGMESPTLVRLLDQLCKAGIVCRSEDPNDRRAKALSLTDKGRALAGSIEQELTRLRADVLQGLQPADLEATLRVFQAFAEAAQGEHGGQV
>LT985192.1|SPD83148.1|3964184_3964853_-|alginate-lyase
MIDLATWNLSVPVGSPATIIETPKLVKGYRDGYFQSGDTLFFWAPVTGSTTENAKYPRSELRETTSDGRVFNWAYSSADNFLRATLEVDQVPSTGKIVIGQIHCYQSTEPLLKVEYQYKEKLQTGNIVAKFRRTPDSEIEVINIAQGVPLNKQFNYTINLSPSGDLTVNAFDAVWYAKLDSAWASKLFYFKAGVYTQDNTGYTTEGGSATFYKLAIAHEKKN
>LT985192.1|SPD83147.1|3962776_3964165_+|histidine-kinase
MRRQPSLTLRSTLAFALVAMLTVSGAGLYLYQSIEETVMQRSDHAVLARLDHFRKLLRYDLTMDNLKGSPQLFENMLDSEEDIFIIGEPGKPPVISVNPQRAPLPELPTVAQDQPLRVDDLRSGLSLQGVPLRAAAVQVMSNGVAVRLQAAHLMVKEMAMLASFRQSIYIAVALAFLITAVLGYVLLRRGLRPLRRMAAHAAAITPASLHKRLDSHDTPVELQQLSDAFNAMLDRLDDGYRRLMQFSADLAHEIRTPVGSLMGHCQVALRQNRSADEYQVLLASNLEELERISRLVESILFLARADEAQAALERQPLDLHDELQRVAGYFEGLAEERNLRLSHSGQGTLLADPILLRRALSNLVANAIRYANENSEILIRVAAVDRQWRIEVENQGPVLPQATLARLFDRFYRGDASRHERSDSNGLGLAIVTAIMHLHGGRAEVAQPAAGRICFSLIFPAV
>LT985192.1|SPD83146.1|3962108_3962798_+|Transcriptional-activator-protein-CzcR
MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDMNFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEVRPCDASLP
>LT985192.1|SPD83145.1|3961333_3961939_-|hypothetical-protein
MKTALSTTFGLLLLSAAVMTQAADMKVVKPMRGTVDSVSADTLDFTTRSGQHESIKLTDKTGIRLVSEADFKQIKGDSFVGSAAIPQADGTLKALEVTVFEASLKGSGEGHYGWENADGSTGTMTNGTVGTLAGTDGRTLTVKYEGGEKKLVVPQDVPIAYVEPGKVDQLTKGAKVVVFPADDGKSARGVAVGKDGFTPPM
>LT985192.1|SPD83155.1|3971329_3972235_-|Catechol-1,2-dioxygenase
MSVRISQTDDVQQFFNEACGLDQPGGSPRMKSVVHRVLTETIKIIEDLRITPEEFWKAVNYLNVLGSRQEAGLLVAGLGLEHYLDLLMDAEDEQAGQTGGTPRTIEGPLYVAGAPLSDHYARLDDGQDPATVLFMTGQVRGTDGAPLANAIVDVWHANTGGTYSYFDPSQSAFNLRRRIRTDAQGRYRFQSIVPSGYGCPPDGPTQQLLDQLGRHGQRPAHIHFFISAPGHRHLTTQINLAGDKYLHDDFAYATRDELIAEIRFTEDANGRHADIDFDFVLQPATTVEDERRQERLRALEV
>LT985192.1|SPD83156.1|3972296_3972662_-|muconolactone-delta-isomerase
MLSVFRTLPAADLPEHKTSHEDTHNMLFHVRMTVKLPIDMPVDKAARLKADEKALAQRLQQEGTWRHLWRIAGLYANVSIFDVADAQALHDTLLQLPLYPYMEIEVTALCRHPSSIHQDDR
>LT985192.1|SPD83157.1|3972627_3973749_-|Muconate-cycloisomerase-1
MSAITIERFETLIVDLPTIRPHKLAMHTLHGQTLVILRIRCSDGIIGIGEATTIGGLAYAGESPESIKVNLDKWFAPLLVGQDATNLNALMQRVDRAVRGNTFARSAVETALLDAQGKRLGLPVAELLGGRVRDGVEVAWTLASGDTGRDIEEAEHMLEMRRHRHFKLKIGAGEPARDIAHVAAIKRALGDRASVRVDINQAWSEAVAIRGCQLLAEAGVELIEQPLSRHDRAAMVRLNARSPIPLMADEAIESVQDSFALAQSGAASIFALKIAKVGGPRAVLRTAAIAEAAGIGLYGGTMLEGSVGTLAAAHAFATLDRLEWHTELFGPLLLTEDILVEPPVYRDFQLIIPDTPGLGLELDAERLSHFARS
>LT985192.1|SPD83158.1|3973806_3974829_-|Anthranilate-1,2-dioxygenase-electron-transfer-component
MTYKVAFSFADGKTLFCNVQNNELLLDAALRSGITLPMDCREGVCATCQGRCESGQYTQDYVDDEALSASDLAQRKVLSCQTRVKSDAAFYFDFASSLCDNTGPSALQGKVSQVELVSQGTAIVQVTLDEQNSGLDYLPGQYARLQIPGTDLRRSYSFANAPGSNTLEFLIRLLPDGAMSNYVRDRCQVGDVIQFEAPLGTFYLRHVDRPLTLVAGGTGLSAFLGMLDQIAAKGGCGQPVHLYYGVRTAQDLCQLARIEAYSQQIPGFRFVPVVSEEQADWSERRGYIVDHLDAAALAEVPTDIYVCGPPPMVESIKDWLHGHSLDASRLYFEKFADSSV
>LT985192.1|SPD83159.1|3974844_3975354_-|Anthranilate-1,2-dioxygenase-small-subunit
MSAQLQYRIEQFLYHMAEVCDAQDWDRYLDLFSEDSEFHLPQWDSEHVYTTDPRKGMSLIYYPNRGGLEDRVYRLRTGKAASTIPMPRTLHLISNVRIAPAGEGANGQAGELDVQVNWHTLYYRLQVAEQFFGRASYRLRPDGDSWKIARKHVVLLNDTINSVLDFYHL
>LT985192.1|SPD83160.1|3975356_3976760_-|Anthranilate-1,2-dioxygenase-large-subunit
MSSAKTVSQWQHFVEGCLDFRPVEGVYRIAREMFTEPELFDLEMELIFEKNWIYACHESEIANNHDFMTMRAGRQPMIITRDGSGQLNALINACQHRGTTLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYPEGFDKATRGLRKARIESYKGFVFISLDVHGSDSLADYLGDAKVFFDMMVAQSATGELEVLPGKSAYTYDGNWKLQNENGLDGYHVSTVHYNYVATVQHRQQVNAEKGAAAGSTLDYSKLGAGDADTNDGWFSFHNGHSLLFSDMPNPSVRPGYATIMPRLVEEYGQSKAEWMMHRLRNLNIYPSMFFLDQISSQLRIIRPLAWNKTEINSFCLGVKGESDADRENRIRQFEDFFNVSGLGTPDDLVEFREAQRGFQARLERWSDISRGYEKWVDGATPNSEAIGISPVLTGTEFTHEGLYVNQHGNWQRFLLEGLARKAAEEHSLKLREV
>LT985192.1|SPD83161.1|3976968_3977979_+|AraC-family-transcriptional-regulator
MKSEAVLPNDLRAHGLHAAHHDLDGARAWMSTICGPHSLQASAPHCLEFEHSANVLSAMSTVLGRIQYGTDVVIGVEPGSSLKSYSISLPLDGEQELDCGKGLLRSNAGTGLIISPFDSQRLSITGNCRKLQVAIDCCSMQRVLDELLERPAQAPLVFEPCINAELGATASWWRMVRYLVDEMDGDSDYFEHLPMARDLERSLIKGLILSQPNNYSAALNEKVQSRCPAYLKRAQQFIEDHCGDDIHLIDIERAAGIGPQKLHDSFKTHFGVSPVAYLKRFRLQSARRSLLQGHSGYNIAAIASQWGFNHLGRFAQDYQRLFGELPSQTLERGSRH
>LT985192.1|SPD83162.1|3978139_3979693_-|aerotaxis-receptor-Aer
MTIPSNSSAPSRPALICRTNLKGQIKHCSDGFAREHGYARDELLEASVTLLRHELMPAAVFASLWSTLGQGTPWMGIVCNRHRDGSQRWHNVYIKPVYGSEGVQGYGAIYLPLSSEQQHRAQVFFARWQRRGSPVSAVAAMTRWLSWSWPTLLVGSGIALACAALESAWLQGASALLGVLVLTGWQSWRQNRQVRAVLASHPKAFSAPALAGLYADMSATPALVNMALIAGEARLQTALSRIGMSGRLIDEHMGALHELIGHEARRLEEQRSESDQSVVALSEMTATIQEVSRNLQHIAEATGQAVEQSSQGQALAEQSLSAMQRLNASVAEISAAAGELSTATESIGSITDIISNIAGQTNLLALNAAIEAARAGDAGRGFSVVADEVRQLATRTQEATLNIQPLLQRFRQTTEQTVQLTHEGQTLSRQGMTAVTSVRESFSQVNEALDRISSMSVQIASAMEQQGQVAEDLNQQAMRIADASRQSAAKALDGRRISEEIGHQVEGLRSLAERFDR
>LT985192.1|SPD83163.1|3979776_3980712_-|hypothetical-protein
MKTQLMCVCGAGLLIAQGAGAYDLPVVNLGLTSFLDGGLPAGPGWYLQEYFQNYSADRLRDKDGKALGLPKQDLDYQVAVTQLSYLSNVRLGNASLGLNAVLPVVTRMKVDDGLNNAALRGQTGMGDLLIGPFIQFDPVMGPAGPRFVQRIELQVNLPTGEYDDKHAINPGNNAWSFNPYWAATYWFTPKWTASVRAHYLYNGKNDDPAQSFGNVSDIQAGQALHANFATEYAVTDQLRLGINGYWLKQITDTQVDGHDVSGRREKLWAIGPGAMYSFSQNDHVFVNAYFEQDVENRPDGSRVQMRYVHHF
>LT985192.1|SPD83164.1|3980752_3981289_-|flavin-reductase
MSTDIETTQTLCDAKDSDPRDLRGLLGQFATGVTVITTCTADGRKVGMTANSFSSVSLEPALVLWSLARSAPSLNDFCEASHFAINVLGAEQHGLSRHFSRPSSDKFAGVAHAAGTAGVPLLDDVVATLVCRNVRQYEGGDHLIFIGEIEHYRYSGAEPLVFHAGQYRIAAAHPGLAQ

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Crispr_ID: LT985192_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985192_6

4460361-4460449

Orphan

Consensus_repeat	Method
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985192_6

>merge|LT985192|6|4460361-4460449|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGGCCAACAAGCCGAATGCTGACTTGTAGACTCCTGTAGGAGCGGACTTGTCCGCGAAGAGG

>LT985192|6|6|4460361-4460449|CRISPRCasFinder
CCTGTAGGAGCGGACTTGTCCGCAAAGAGG	CCAACAAGCCGAATGCTGACTTGTAGACT
CCTGTAGGAGCGGACTTGTCCGCGAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
LT985192.1\|SPD83605.1\|4451705_4452239_-\|transposase	unknown	unknown	gnl\|CDD\|224854
LT985192.1\|SPD83621.1\|4467460_4467559_+\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83613.1\|4460612_4461860_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
LT985192.1\|SPD83610.1\|4455912_4456479_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|223816
LT985192.1\|SPD83611.1\|4456490_4456658_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381166
LT985192.1\|SPD83618.1\|4465355_4465583_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83617.1\|4464905_4465274_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83619.1\|4465736_4466021_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83620.1\|4466036_4467380_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83622.1\|4467946_4470952_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226973
LT985192.1\|SPD83606.1\|4452257_4452869_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83612.1\|4457375_4460288_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|235966
LT985192.1\|SPD83604.1\|4450837_4451626_+\|dienelactone-hydrolase	unknown	unknown	gnl\|CDD\|223489
LT985192.1\|SPD83608.1\|4453593_4454301_-\|iron-reductase	unknown	unknown	gnl\|CDD\|274875
LT985192.1\|SPD83616.1\|4464193_4464484_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83603.1\|4450314_4450665_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83615.1\|4463565_4464141_+\|phage-antirepressor	unknown	unknown	gnl\|CDD\|214989
LT985192.1\|SPD83607.1\|4452954_4453593_+\|4'-phosphopantetheinyl-transferase	unknown	unknown	gnl\|CDD\|225524
LT985192.1\|SPD83609.1\|4454297_4455908_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236724
LT985192.1\|SPD83614.1\|4462026_4463148_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366960

Protein	Function_ID	Function_description	E-value
LT985192.1\|SPD83605.1\|4451705_4452239_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00166468
LT985192.1\|SPD83613.1\|4460612_4461860_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
LT985192.1\|SPD83610.1\|4455912_4456479_-\|transcriptional-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.82652e-65
LT985192.1\|SPD83611.1\|4456490_4456658_-\|hypothetical-protein	gnl\|CDD\|381166	cd19939, REC_OmpR_BfmR-like, phosphoacceptor receiver (REC) domain of BfmR-like OmpR family response regulators. Acinetobacter baumannii BfmR is part of the BfmR/S two-component system that functions as the master regulator of biofilm initiation. BfmR confers resistance to complement-mediated bactericidal activity, independent of capsular polysaccharide, and also increases resistance to the clinically important antimicrobials meropenem and colistin, making it a potential antimicrobial target. Its inhibition would have the dual benefit of significantly decreasing in vivo survival and increasing sensitivity to selected antimicrobials. Members of this subfamily belong to the OmpR family of DNA-binding response regulators, which are characterized by a REC domain and a winged helix-turn-helix (wHTH) DNA-binding output effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.01541e-10
LT985192.1\|SPD83622.1\|4467946_4470952_-\|membrane-protein	gnl\|CDD\|226973	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown].	1.59386e-95
LT985192.1\|SPD83615.1\|4463565_4464141_+\|phage-antirepressor	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.50029e-24
LT985192.1\|SPD83612.1\|4457375_4460288_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
LT985192.1\|SPD83604.1\|4450837_4451626_+\|dienelactone-hydrolase	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.52639e-58
LT985192.1\|SPD83608.1\|4453593_4454301_-\|iron-reductase	gnl\|CDD\|274875	TIGR03951, Fe_III_red_FhuF, siderophore-iron reductase FhuF. Members of this protein family, including FhuF of E. coli, are siderophore ferric iron reductases that appear to play a role in iron removal from certain hydroxamate-type siderophores, including coprogen, ferrichrome, ferrioxamine B, and aerobactin. Genes occur in regularly in siderophore transport and/or biosynthesis clusters. The C-terminus includes four Cys residues in a C-C-10(X)-C-X-X-C motif that binds a 2Fe-2S cluster. Family TIGR03950 is similar, but especially in the C-terminal region, but likely acts on a different panel of siderophores. [Energy metabolism, Electron transport, Transport and binding proteins, Cations and iron carrying compounds].	2.65119e-66
LT985192.1\|SPD83607.1\|4452954_4453593_+\|4'-phosphopantetheinyl-transferase	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	2.76578e-61
LT985192.1\|SPD83609.1\|4454297_4455908_-\|sensor-histidine-kinase	gnl\|CDD\|236724	PRK10604, PRK10604, sensor protein RstB; Provisional.	5.42387e-85
LT985192.1\|SPD83614.1\|4462026_4463148_+\|HNH-endonuclease	gnl\|CDD\|366960	pfam02182, SAD_SRA, SAD/SRA domain. The domain goes by several names including SAD, SRA and YDG. It adopts a beta barrel, modified PUA-like, fold that is widely present in eukaryotic chromatin proteins and in bacteria. Versions of this domain are known to bind hemi-methylated CpG dinucleotides and also other 5mC containing dinucleotides. The domain binds DNA by flipping out the methylated cytosine base from the DNA double helix.The conserved tyrosine and aspartate residues and a glycine rich patch are critical for recognition of the flipped out base. Mammalian UHRF1 that contains this domain plays an important role in maintenance of methylation at CpG dinucleotides by recruiting DNMT1 to hemimethylated sites associated with replication forks. The SAD/SRA domain has been combined with other domains involved in the ubiquitin pathway on multiple occasions and such proteins link recognition of DNA methylation to chromatin-protein ubiquitination. The domain is also found in species that lack DNA methylation, such as certain apicomplexans, suggestive of other DNA-binding modes or functions. A highly derived and distinct version of the domain is also found in fungi where it is fused to AlkB-type 2OGFeDO domains. In bacteria, the domain is usually fused or associated with restriction endonucleases, many of which target methylated or hemi-methylated DNA.	7.66005e-06

>LT985192.1|SPD83612.1|4457375_4460288_+|Ribonucleoside-diphosphate-reductase-subunit-alpha
MQTDTTRENSPTGAPQASQTPQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDSRAKERAVRAPEDQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGTLPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ
>LT985192.1|SPD83611.1|4456490_4456658_-|hypothetical-protein
MEPHTWHVLIVEDDQRLAELTSDYLHNNGLRVSIEGNGALARWRRRESLPNSRIW
>LT985192.1|SPD83610.1|4455912_4456479_-|transcriptional-regulator
MLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQDMSGHVFSG
>LT985192.1|SPD83609.1|4454297_4455908_-|sensor-histidine-kinase
MNSIFLRIYGGMLGVLVLVALLGVFALHVLNQSRGEQYRERLAHGTFTVMADNLVPLNDIERRRALAIWERLLGIPLSLQSIEQAGLDSGARGRLARGQAVVEQIGPHAARVYRQLNDKEPLLLSGEVQQITEQLARATIYLLIDELVRFPVDEQPARLQALRIDKGFGFDLHLLALDQADLDDDQRRRIYEGDTVMALGKGGDSIRVLAGIVDTNWVLEIGPLYQMNPYPLHWLLVIALMGLCFIGLVVYLLVRRLERRVLELEAAATQIAQGSLQTRVPTEGSDSVGRVAAAFNSMAEHLQRSLMIQRELVRAVSHELRTPVARLRFGLEMVSDPTTPEARRKYMRGMDSDIQDLDKLVDEMLTYARLEQGAPTLNFQRVDLDALIDQVIAELAPLRADVRVSRGECLRAEECEAAWVEGEPRYLHRAVQNLVSNALRHAESEVRISYRLEAQQCRIDVDDDGLGVPEQAWEQIFTPFMRIDDSRTRASGGHGLGLSIVRRIIHWHEGRALIGHSVSLGGACFSLSWPRTQVPR
>LT985192.1|SPD83608.1|4453593_4454301_-|iron-reductase
MSLPSFVGPFARFGRTLLTADDARPVVTLPDLLQPERLDQLLLAVYGPQLMPGQLPVLVSQWAKFYFMQLIPPVLVASLVHHWHWPLQVEQVALALDERGVPNGVRLAEEGRVWRGMSVDPFQRFAGLLDDNLQPFIASLSAYGGLPAAVLWSSAGDYLEGCLAQLATCSDVSLAAGLALLSEKKRPDGRANPLFQAVRYVPQAQGGEPRRQRRVCCLSHRVEWVGRCEHCPLSG
>LT985192.1|SPD83607.1|4452954_4453593_+|4'-phosphopantetheinyl-transferase
MSGHFDPLKLVDGDFQRCELQMPASIQRSVAKRQTEFLAGRLCAREAMRQLDGRLHVPAVGEDRAPAWPADVCGSITHSTGWAAAVVAHKRQWRGLGLDTENLLSHERASRLAGEILTAAELADMAAGAQDQVALRVTLTFSIKEALFKSLYPIVQKRFYFEDAQLLEWSADGSARLRLLIDLSSEWHAGKELDGQFSVLGDHLLSLVAVEG
>LT985192.1|SPD83606.1|4452257_4452869_-|hypothetical-protein
MGGILPGEWVGGKGTGNICVLLTTQSVETCIPTPEREERSSQLSCVAPPCVALRRVQFWTLCVLLATQSVETCIPTLEPEERSSQLSCVALRRMPFRTLRVLLATQSVATCSTTLERGNENLNYRASLCVACCSGRSASSWRRRASRPALPRWSVGTRISTIVRRSASHAVLDALRPLCQVEQKAGHTFIISTHSVGMYRSGL
>LT985192.1|SPD83605.1|4451705_4452239_-|transposase
MGRSRYTITEPEKPHFLTCTVVEWLPLFTRPALVDVLLNAWRYQQLHQGLQLYGYVILENHLHFVAQAPELDKCVNSFKSFTARQIIHVLEKANAQSALQRLRFVKPMHKTDRVYQVWQEGAHAELVWNEAVMRQKLDYIHHNPVKRGYVDVGEHWRYSSARDYEGQRGLIDIQRWY
>LT985192.1|SPD83604.1|4450837_4451626_+|dienelactone-hydrolase
MRVWIAMIMMGLTGLAQAAIKTEQIDYKSADGTKLVGYYAYDDAVKGPRPGVLVVHEWWGLNDYAKRRARDLAALGYSAMAIDMYGEGKNTEHPKDAMAFMQAALKDSDAADKRFDAGLEQLKQQPQTDPKKIAAIGYCFGGKIVLDAARRGEPLLGVVSFHGALVTNTPAKPGIKVPMLVEHGAKDSMVTAENVAAFKKEMDDAKADYKFVSIDGAKHGFTNPDADRLSHGDHGGPDIGYDKAADQSSWSDMQVFFKKIFG
>LT985192.1|SPD83603.1|4450314_4450665_-|hypothetical-protein
MLNLNKFFLALAFLGGSAAAQAGDGRLDVARIEFGKTSERLDDANSWGHALGEQAHTNVSVGTLYSPPVYGTLTGTHNGVPVSREILLGSYDVTQQVPVSARLLSTDATMSFHSLS
>LT985192.1|SPD83613.1|4460612_4461860_+|Ribonucleoside-diphosphate-reductase-subunit-beta
MLSWDEFDKEDGEVVAKATNAGHANEANMDRLDSAGGLAAQEARAVTAADSAALIRAKKALDALDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD
>LT985192.1|SPD83614.1|4462026_4463148_+|HNH-endonuclease
MAIPAVEQKAIEKALKKFDKELRKQPDWATWESNRSHKFAIRVEGQLYPAKKIVSLATGIAVYDFTGGRPTNGYLRARGFEVVDLRKSPKLEFVKGEIYDRRSEIHAPFGGSFQSGIAPSDKAPAVFLFTGSSGEQYGYRDKIDASGVYSYTGEGQIGDMTLTRGNLAIQKHAETGRSLHLFKALDERKGQQYVGEFSCADISWTDGPDREGTTRKALIFHLIPVIDLLTNEESPREILQEEDQQEIDIDILRNLAYEATVALPSKGKMTAIRTVYARSQAVKDYVLRRANGECESCEKSAPFVTKKEQPYLEPHHINRLSDDGLDHPQFIAALCPSCHKEIHYGKMGEQKNEILKEIISSKESPWLANKNKH
>LT985192.1|SPD83615.1|4463565_4464141_+|phage-antirepressor
MLSNLFQASARQPREVCAGFTPTPFHRHNRQLLALLLENQPWFSARDLGRMIGWPLNERTLRKLDADQHRMITLDLHGEAQSELMVSESGAYAMMVHHYHAENRGLRQWLTNEVVPALRDGQVLFDDCTPHLSMLQWPGLSVSMLHWHSEPWIRLRDMPMVLAHPQMQVDARPHRLAKSWWRAVLPVSRLG
>LT985192.1|SPD83616.1|4464193_4464484_-|hypothetical-protein
MKKTGTGFVAILALLCAFSANAREAQVTDASIVKAIIQESIDSYPGNCPCPYNSARNGSQCGKRSAYSRKSGYAPICYKEDVTKEMISDYRRRLKD
>LT985192.1|SPD83617.1|4464905_4465274_-|hypothetical-protein
MFVKQCEWISKDALEAMLTIGDAETQCVAFCHPYHMNVGDMLLEPVLAISIKNVAKMAAGSQPYVLRIDDGFVHEILAEVVSVEKSLVIVGQLTIELDDVLPGDIDLGDMISFSCERLDVIS
>LT985192.1|SPD83618.1|4465355_4465583_-|hypothetical-protein
MVRYLGLKFEEEYAGIKKYTNGQINMSIFLDGNNEVESIYFQAFESFLAGIYKACQNEAVFSGAEIFIPEEMKSF
>LT985192.1|SPD83619.1|4465736_4466021_-|hypothetical-protein
MKYENVRHMLKTVFCSDFNLAEDVAIGIYVNSLNSSGKTDEMRYELAECLRDQNVSWRDMLVNDEYEVLDFETEQEAKDYIKRILWQPLDKKTN
>LT985192.1|SPD83620.1|4466036_4467380_-|hypothetical-protein
MFFFHMLPSWDDIRRKLDRDIAPYRGGHFRTHRNEPVPSPALIIRRFNCVRSAFDRAESEACRILGQRFVDLDISSIIKDLIDVVAQMAMIVVGSAFVGGVAGASAGALFFGVGAAPGGLMGATLGAQASTFILGILGLESIAESVIDGFPRIIHYYTRGISTAWQGPREQGWSSFMGDDPVAQNSAVQEIAQGHVEVVILLLGAIVQYITRGRGNARALANEMRASAKGERLGQWMLEHEDELKKRPDLQGPEPRRGALEPQEALSTNRSKTADAAKPDAIDQKTVSSKIDAKQLDLVTGHPNAHSLSVHGGKVSDGDLMLRAKSAIKPNGDVGPSVPPLSSAFHSDELLIFADQTIRNGGALERAIARQPGQDVIRVTAQDAGDIGVDLGRGFKRVLPTGNILKNLETNGAPEKLENLRSIEGLYQYNPSKKNWETITIFPAPAP
>LT985192.1|SPD83621.1|4467460_4467559_+|hypothetical-protein
MKPAKIRKIRTTALAAQKQPLTDSGFPRVVQV
>LT985192.1|SPD83622.1|4467946_4470952_-|membrane-protein
MRKSKRLGAVRYSFKPLASGALCALSFTFGCSAYADYVEQGKPDDAASWRSAEFQSDWGLGRIQADQAYAAGITGAGVKIGALDSGFDPSHPEATPSRYHAVTATGTYVDGSPFSITGAINPNNDTHGTHVTGTMGAARDGVGVHGVAYNAQIYVGNTNQNDSFLFGPSPDPQYFKAVYGALADAGVRAINNSWGSQPSDVTYATEAGVRAAYAQHYNRGTWLDEAANVSRKGVINVFSAGNSGYANASVRASLPYFEPDLEGHWLAVSGLDSSNGQRYNQCGLSKYWCITMPGRLINGTVPGGGYGIKSGTSMSAPHATGALALVMERFPYLNNEQALQVLLTTATQLDGSVTQAPTNSVGWGVANLERAMRGPGQLLGTFDANLGAGVSDVWSNDISDQALLQRQAEDTAEQATWQQTLISKGWQNGVASTASQQDQADYATGTARAAAAAQRQYQGSLVKSGAGRLILQGANTYRGDTLVNGGLLSVNGSLVSAVQVNAGGTLGGNGQIGGLTARSGGIVAPGNSIGTLQVNGDVTLQPGSTYAVELSPTASDRIVATGSATVSGANMTLAQENATPVALSSAPIQSVVGRQYNVLQAANGVNGQFGSVTSNYAFLGGRLDYAATGVALNVEQTSAFSSVAQTPNQSALATAAEQLGAGNAVYENLLLTQSAAAARDSFQQLSGEIYPAIGSVLINDSRQIRDAVGERLGTSVFGTDGNTAAQDNVWIKALGAWGKTDSRDDTAGYTTSIGGLLAGVDGNLADDTRLGVVAGYSDSSLNMGSGMHSRASVDSYHLGAYLGHEIGALRLTLGGAHSWHRIDAQRDVQVGGAAGKEKTKHDAQSTQVFTEAAYRIHLQPATLEPFANLAYVHLNTDSFTEKGDAAALSAGSDNRDAVLSTLGVRALKTIAISDRQKIDLSGSLGWQHNLSNTDSEQHLAFASAGNSFNVQSVSMDRDAAVVGARASLALGKDARINLDYNGLLGARDKTHGVGLSLDWQF

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Crispr_ID: LT985192_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985192_7

4754308-4754447

Orphan

Consensus_repeat	Method
GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985192_7

>merge|LT985192|7|4754308-4754447|CRISPRCasFinder
GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAGTTGAGGGTTCTTATTGGACTGGCCGCTGTGGTGAGTAAAGACGTTTAGTGATGCGGGTATAGTTTAGTGGTAGAACGAAAGCTTCCCAAGCTTTAG

>LT985192|7|7|4754308-4754447|CRISPRCasFinder
GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAG	TTGAGGGTTCTTATTGGACTGGCCGCTGTGGTGAGTAAAGACGTTTAGTGAT
GCGGGTATAGTTTAGTGGTAGAACGAAAGCTTCCCAAGCTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
LT985192.1\|SPD83864.1\|4742163_4742781_+\|urea-carboxylase	unknown	unknown	gnl\|CDD\|132465
LT985192.1\|SPD83868.1\|4750897_4751971_+\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83873.1\|4754901_4755873_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379328
LT985192.1\|SPD83877.1\|4759191_4759710_-\|integrase	unknown	unknown	gnl\|CDD\|379154
LT985192.1\|SPD83872.1\|4754465_4754585_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83865.1\|4742890_4746673_+\|Urea-amidolyase	unknown	unknown	gnl\|CDD\|274264
LT985192.1\|SPD83875.1\|4757155_4758706_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275009
LT985192.1\|SPD83866.1\|4747066_4748524_+\|Allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
LT985192.1\|SPD83881.1\|4763783_4765292_-\|Transposase-for-insertion-sequences-IS1326/IS1353	unknown	unknown	gnl\|CDD\|226950
LT985192.1\|SPD83867.1\|4748666_4750862_+\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83863.1\|4741426_4742152_+\|urea-carboxylase	unknown	unknown	gnl\|CDD\|163257
LT985192.1\|SPD83874.1\|4756011_4756464_+\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83871.1\|4753277_4754159_+\|(R)-3-hydroxydecanoyl-ACP:CoA-transacylase	unknown	unknown	gnl\|CDD\|223669
LT985192.1\|SPD83870.1\|4752287_4752980_+\|Ribosomal-small-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|211327
LT985192.1\|SPD83876.1\|4758728_4759163_-\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|274056
LT985192.1\|SPD83878.1\|4759759_4761556_-\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|239569
LT985192.1\|SPD83879.1\|4761865_4762732_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD83880.1\|4762987_4763791_-\|ATPase	unknown	unknown	gnl\|CDD\|366760
LT985192.1\|SPD83862.1\|4740647_4741430_+\|lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|213260
LT985192.1\|SPD83869.1\|4752027_4752252_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379586

Protein	Function_ID	Function_description	E-value
LT985192.1\|SPD83876.1\|4758728_4759163_-\|haloacid-dehalogenase	gnl\|CDD\|274056	TIGR02252, Rhythmically_expressed_gene_2_protein, REG-2-like, HAD superfamily (subfamily IA) hydrolase. This family of proteins includes uncharacterized sequences from eukaryotes, cyanobacteria and Leptospira as well as the DREG-2 protein from Drosophila melanogaster which has been identified as a rhythmically (diurnally) regulated gene. This family is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called 'capping domain', or the absence of such a domain. This family is a member of subfamily 1A in which the cap domain consists of a predicted alpha helical bundle found in between the first and second catalytic motifs. A distinctive feature of this family is a conserved tandem pair of tryptophan residues in the cap domain. The most divergent sequences included within the scope of this model are from plants and have "FW" at this position instead. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.	9.3973e-10
LT985192.1\|SPD83873.1\|4754901_4755873_-\|hypothetical-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	2.4727e-14
LT985192.1\|SPD83877.1\|4759191_4759710_-\|integrase	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	0.00830226
LT985192.1\|SPD83878.1\|4759759_4761556_-\|hypothetical-protein	gnl\|CDD\|239569	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	2.42452e-70
LT985192.1\|SPD83875.1\|4757155_4758706_+\|hypothetical-protein	gnl\|CDD\|275009	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family. This model describes a sporadically distributed conserved hypothetical protein in which complete members average over 500 amino acids in length, although matching sequences frequently are truncated or broken into tandem ORFs. Regular co-clustering with known markers of mobility (integrases, transposases, phage proteins, restriction enzymes, etc.) suggests this family also is part of the mobilome. The function is unknown.	0
LT985192.1\|SPD83866.1\|4747066_4748524_+\|Allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
LT985192.1\|SPD83881.1\|4763783_4765292_-\|Transposase-for-insertion-sequences-IS1326/IS1353	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.68994e-14
LT985192.1\|SPD83864.1\|4742163_4742781_+\|urea-carboxylase	gnl\|CDD\|132465	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	2.32191e-133
LT985192.1\|SPD83863.1\|4741426_4742152_+\|urea-carboxylase	gnl\|CDD\|163257	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	2.8409e-123
LT985192.1\|SPD83871.1\|4753277_4754159_+\|(R)-3-hydroxydecanoyl-ACP:CoA-transacylase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17441e-15
LT985192.1\|SPD83870.1\|4752287_4752980_+\|Ribosomal-small-subunit-pseudouridine-synthase-A	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	5.72554e-88
LT985192.1\|SPD83865.1\|4742890_4746673_+\|Urea-amidolyase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
LT985192.1\|SPD83880.1\|4762987_4763791_-\|ATPase	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	3.61367e-76
LT985192.1\|SPD83862.1\|4740647_4741430_+\|lauroyl-acyltransferase	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.54375e-100
LT985192.1\|SPD83869.1\|4752027_4752252_+\|hypothetical-protein	gnl\|CDD\|379586	pfam14375, Cys_rich_CWC, Cysteine-rich CWC. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 74 and 102 amino acids in length. It contains eight conserved cysteines, including a conserved CWC sequence motif.	3.25878e-12

>LT985192.1|SPD83871.1|4753277_4754159_+|(R)-3-hydroxydecanoyl-ACP:CoA-transacylase
MSPEKAVLDIQGQFRVYTEFYHTDAAAKTIILVNGSLATTASFAQTVRNLYPTFNVVLYDQPYSGRSKPHNVHGAPLTREEEGQLLLELIDHFNAEHVLSFSWGGAATLVALAHQPRRIESAVISSFSPVINGPMREYLDKGLDYLGAHSRYDMGHLINNTIGKHLPALFKRVNYRHVSSLDGHEYDQMHHHFSQVLELDPDNYLTAGQRIKVPVLFINGAWDEYTSANDAAQFSRYLQNCSFNTIEATGHFLDMEHKAACRDSKQALMNFLQPAQASSSVYNRVQGHHAFAF
>LT985192.1|SPD83870.1|4752287_4752980_+|Ribosomal-small-subunit-pseudouridine-synthase-A
MRLDRFLSNLPSLNRKSVRLALASGRVQVDGQTTSDPHHEVREFSRVALDGEILQAGKAARYFMLHKPEGCVSATVDTQHPTVLDLLDEPDRHELHIAGRLDFNTTGLMLITNDGQWSRRLTQPQNKMPKVYYVETEQPIDERYAATFAAGMYFSFENITTQPAQLTLLGPRSARLTIVEGRYHQVKRMFGHFNNKVLRLHRENIGALALDPALAPGGYRALHAAEISLF
>LT985192.1|SPD83869.1|4752027_4752252_+|hypothetical-protein
MNDTRLCPLCGFSNQCSLADPRTADQACWCFSESIDPALLEALPAAIRDKACLCPRCAGIQEAASGQSADRINK
>LT985192.1|SPD83868.1|4750897_4751971_+|hypothetical-protein
MTSAQVSLAYWTDRLHHLQRLLVPMSLLLTPAFLASLAADVGLTALSVASANLPGSRYAEKNQALQATLSLGLLQLGPQTPRLLRTLTKIVKPAGHTAGASLVLSGGSRGSSHLGARPLKPRHTRLEKFFHTDALLKRWTITSIVSPGLVPVHAWKLGRRFLLWTSDRGQARTLVVSTHGYYTPWTATVKIPNGTEIRTYAPHGYELVDPKLHRIVNKNARPFAISNTKENILMYPVAAHEPLLMTDKIIAGTSLPGRLKNYSLSKFQTASYETYDDIARVVGNSNASPLKGWLPPTPMDVLTVRNRFGKAPPSLSDLFHSLSTQGIHYDRVLLVHCRCAAISALLRRAPVYHPPAT
>LT985192.1|SPD83867.1|4748666_4750862_+|hypothetical-protein
MNHIWSPLRQDTLFHASSFLLEQPSVLLPEHSNSRHDTLNAWAPLALPALRFPPREQPLPPLAEKHATQDKTARIERTLEALRKSPGFQLIANSALLLEACQLDMDFPPTRKHYVHQQLVMLLKQKTGKTLDPDTLRITFSTQTLPALNDEGHERYSIDMSLTNVALAVFDPEQFVALYRSEIIDTPLSEEAPSLSARQVLKWLSETPLDRDYSMALEAFRTRHTVTCRTLSRLGFLDGLAHRFFHGHISRDGYFLTLDALGLSDFPADVATLEQSGRGEKSEVRILSLNGETVPGIFQVRSKTTSHCFIHILSAKGNVIEYISDDPDQMTNRLLAALNASRLYGYALHALDQDAGIVASAPLLAEDVFTELTQASFAETQLNSQNIDLLKTVSRSLKLAGAVDLWQTNPALLEHIPSASRMAAQVMETYLLEHHGLTLNPDHVFIAYQSGNSISPLGGARNPPTHVHTPDEKPISLSEALVINYRVDAPQGYIDHDGITEVFLDTTGQGVRAQGQSLAITPQSLEDYIKAFDFLNWMTKRIQEFWGQQKEAIEQALKSALIHQALISLKRGSLKRSGFDQVVEALAPSAPNHWMVLGFFVQGSLIDGMEHQYTGLLILEQPGKPKVLYQPGYPEAFIEFTDGDALERYLNLKTAQPDWREAVMRYVPARHHQRLDYLFKLWGGIQAPGPPVSILRPWTDALYNPDARKALHHSLCEKNWRARRSVICINS
>LT985192.1|SPD83866.1|4747066_4748524_+|Allophanate-hydrolase
MGKTNLDQFATGLNGSRSPYGACPNSVLKEYPSGGSSSGSSLAVALEVSSFSLGTDTAGSGRVPAALNNLVGLKASKGLISTAGVVPACRTQDCVSIFTATAREASQLLGLVATLDPHDEYSRRNPQWNDLSAFGAPRPFRFGVPRAEDLEFFGCNEGPRLFSAAIAHLTALGGEAVTVDLSPFLEAARLLYEGPWVAERYSVAGQLMEEHPDAVLPVIRDVLAKAPRVSGVDTFRAQYRLQALKVICDRALEGLDCVVTPSIGRPVTSAELAAEPVLRNSELGYYTNFVNLLDYAAIAVPSAFMSNGLPWGITLFGRAFTDQYLLSLADAFQRHTALPLIGGAAPRLPAPKTLAGNDMARLVVCGAHLDGLALNWQLKRRGARLLECTHSSADYKLFALAGGPPFRPGMVRVAEDGVAIEVEVWELPSVELGSFLTGIPAPLGLGKVQLADGRWETGFICEAYGLTGARDISHLGGWRAHLQQM
>LT985192.1|SPD83865.1|4742890_4746673_+|Urea-amidolyase
MFDKLLIANRGAIACRILRTLRTLQVKGVAVYSEADAASLHLMQADEAHSLGEGGAAGTYLAVDKILAIAKASGARAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTELLDSLESAIAAARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTEQVWGVDLVSWMVQLAAGDLPPLEQLQAGLKPSGHAIQARLYAEDPGRDFQPCPGLLTAVNFPPADGHALRIDTWVEAGCEIPPYFDPMIAKLISWAQTREQASTGLIDALNETRLYGVETNRDYLRQIIADTPFASGQPWTRCLEGLVYHADTFEVLSGGTQTSVQDYPGRLGYWAVGVPPSGPMDSRALRQGNGLLGNAEGCAALEITMSGPLLRFNTDAVIAVTGAQIPITLDGEPRAMNTALLVCAGSTLALGTIAGAGVRSYLCVRGGLDVPDYLGSKSTFTLGQFGGHGGRALRAGDVLHIALLVDRSAGQRVADDALEALPDIRRIRIIYGPHAAPEYFTEAYIETFFATDWEVHFNSSRTGVRLIGPKPEWVRADGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPDGPSLGGFVCPVTIIEADLWQLGQLKAGDRVRFTPVSVEACHAERCRSELVREGYIPDAENTSTVPTSSRASSLPQGTADSRGSELVREGYIPDAENTSTVPPSSRTSPLPQGIANSRGSEAVRIEDLPSPVILDIGQDDKRLVARLSGDTHLLLEIGAPELDLVLRLRGHALMLALEAKQLGGVIDLTPGIRSLQVHYRPEQLPLRQLLDIVAGEWDAVCAAKDLQVASRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIRRINDLPNLDEVQRTVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENSVGIGGAYMCVYGMEGPGGYQFVGRTLQMWNRYRNVAAFEGKPWLLRFFDQIRFYPVSADELLRIRRDFPLGRFDLNIEHSTLNMADYQAFLTREAEGITAFRAQQQSAFNAERERWIANGQADFQSDEGVAPNTEELPLQTGQQGVDSHIAGNLWQVQVQPGERVEAGDVLVILESMKMEIPLLAPVAGVVQEVRVQPGSAVRAGQRVVVLAAD
>LT985192.1|SPD83864.1|4742163_4742781_+|urea-carboxylase
MNSHTHICCDATIPAGEPFLAEVKAGQTVRILDLQGNQAVDTLFFSLANPRERYDVQRTLRRQNSVYLTTGSVLFSNLGQPMLTIVDDTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNYLRACLHDGRLTKADIGPNINFFMNVPVTAEGGLTFEDGISAPGKYVELRAEMDVIVLISNCPQLNNPCNGYNPTPAQLLIRD
>LT985192.1|SPD83863.1|4741426_4742152_+|urea-carboxylase
MTDSTTLYPVFAEEMLPGGGHRSFILKRGELLRLTDLHGNANVSLTLLNAHEKTERLNLPDSLKCQHTARLSNGHCLYSDMGRVLAAIVTDTCGWSDSIGGVLNAQEVAEKYGQGRYQELRNGFFRNGVDNLLVELGKWGLGLSDLLMTLNLFSRIDVDEAGILHFAANNSKAGDYIELYAPMDTLVVLTALQHPMDPNPQYAPQPLRLSWMKADASVAEHCRTSRPENERGFINTDRLFA
>LT985192.1|SPD83862.1|4740647_4741430_+|lauroyl-acyltransferase
MSFICVRNVWQQYDDQVVLEGLNLDVAEGEFCTLVGASGCGKSTFLRLLLGQETPSRGLITLDGKALRNEPDASRGVVFQRYSVFPHLSVLDNVALGLELPRSAWLGRLFGQAKSEAREHAAQLLGKVGLGHALDKYPTQLSGGMQQRLAIAQALIMKPRVLLLDEPFGALDPGIRKDMHHLLLDLWRETKLTVFMVTHDLSEGFNLGTRLLVFDKVRHDPHEPGAYGARITYDIPLNSERRAERAAIDSLLNVSEEPVQ
>LT985192.1|SPD83872.1|4754465_4754585_-|hypothetical-protein
MEGLPADAPGVQKGELSKVQKTLGGQGVPGFEVCVRWSG
>LT985192.1|SPD83873.1|4754901_4755873_-|hypothetical-protein
MPNVFFSYCHADEALRDQLEKQLSMLKRQGVIETWHDRRISAGQEINPAIDDHINTDEIILLLVSPDFIASDYCYDIEMTRAMERHQAKQATVIPVILRACDWHHAPFGKLMGTPQDGKPVTLWPDRDEAFLQVATEVRKAAEKWRNSKPVSPLSSVLTASSASVAAAPHAITGPRSSNLRLAKSFTQLDKDQFQFETFEYIARYFESSLAELQSRNSGYQGTFRRVDANRFSVTIYKDGRDVAKASVFVGGQMGAGIYYSQGDGFGGGSFNEALHVESDDQTLYWRTLGMASFHSQRDQKLSQEGAAEALWEIVITPLQRGH
>LT985192.1|SPD83874.1|4756011_4756464_+|hypothetical-protein
MVSAHNLASVCEFTSQLSGTLQILYASAPQVVVYSSAMMPIYSGCTKSVAVPFHGLPPDLAEYATVIFTDCHLLTLSDFLVALRNVPATTRFVLIDTRPAMAEQPAHFLDALKIYYPVITLDVLNHAVPAIPAPNVERCDEEQVFNVYYA
>LT985192.1|SPD83875.1|4757155_4758706_+|hypothetical-protein
MKITINVFMLKEGRAVQDALNDEVNLQPIAFELNGVDCLFYHQKNPSHPKWTQLFKDIEEVVALDLTGRSLKALLVMAVRGRVFCFTFGHARYLIDSLAIERYFGLRTALSLTDPLLIKSVEKSNIDRTPLRSKSQSSKHLSIAEFDFKFDSEILKSLTGIVESDQDDGEYVSGSDSLALHSDVKLEEFPEIASRLLTAYEDERCKEKYPWMDYIVPVRDSSLNGDLDGLLVEAINAEQFDRVRAASPELLGNDISGFGYVKHSARSHHGPALAFDLDLRQALLAKHILGAVTHPLLLSERIYLYGAEEQRIAMWSLYNCLEAEVEHDGKVYLLSEGDWYQIDRDYTDQVNRFFEAATRCELQFPRYNADNEGPYLRRIADNANFYLLDQKLVRLNNASSPFEFCDLLTPDHHIIHVKKYSSSSVLSHLFSQAYVSAEALINAPDVTAQVNTHLSELGPFQFVFDPATLPRNKIVFAIMQPNDELHMPFFSKVNFRQFSQRLGAMGYQVEVCRIAN
>LT985192.1|SPD83876.1|4758728_4759163_-|haloacid-dehalogenase
MEVIQAALADELESLLPFADGLEAVEMLRGAGVCVGMCANLSAAYRAGVKRLLSAADAFALSYEIGDIKPEPLIYQAMGDLLGVQTHRYVLPGPPSILMIGDSLRCDRDGSRTLGISGHLLTRGGGGIENFVQFAELVLQSTGQ
>LT985192.1|SPD83877.1|4759191_4759710_-|integrase
MISMEMMGKTRRMYLRDKLSVHQIAKRTGLSRNTIRKWIRAPETKQPVYQRQAAFNNLSPFHGTLEQALKADSLRAKHNRRTAEALFEQIKADGYDGGYNQLTAFIRAWRGKQGKSLRAFVPLTFALGEAFQFDWSEEGLLIGGLFRRTQVSHLKLCARRAFWLSWSWSGWK
>LT985192.1|SPD83878.1|4759759_4761556_-|hypothetical-protein
MDIDSIFKDLFGPGFQSLDGFCRLLEVDQNKLLNFLYNRKGSHYVSFSILKKNKTHRSIKAPKRVMKKIQHALLPHLEKFYSPKSSSHGFVKGRNVKTNAQIHSRKRYVFNIDLKDFFESIHFGRVRNLFMAHPFNAPHNVATVIAQICCSYGKLAQGAPTSPLISNMICRKLDSQLQALAKTSKCHFTRYADDITFSFTSTEKHLPKDIVEVSEDGRAIPGRELEEIIRAAGFAINSEKTRLQHRTQRQMVTGLVVNEMPNVTREFIRLTSSMINALKSYGPELAEAKYLEILKAKNHTLQPRQLLRTNDGNGDFFIKVVKGRLNYIQMIRGRGDKIYRRLAYEFTVALGKENPEFKKSPEEILGNSIFVVNNIISESQGAAFLLEGVGIVTNEHVVSGVSKTIARHSISFHRAGDTKEYSAELILSDKKADLAVFRPNEEFRNIPVLKKSDKTIVRAMDAVLSIGFPKYRDGTAHYIARGHTTQRRRQVDLDLWLVDFMLLEGNSGGPMFNDSMEVIGVTARGAKNNIDAALYGFIPLESLNSFTSRSDFILLNRLHDYIGNGSLSLLPQTLGKGVLSITYQAMLRKQHLLPLTEN
>LT985192.1|SPD83879.1|4761865_4762732_-|hypothetical-protein
MSSQSTALEELRAVIGEQSKLLTLILFTISQGPVLRQGQWLSCSLDTEQARATAAVAMGAGQSLGTVVKNSGERGLAVRDLYPIARSVVEGFINAAFFATQPVHVAKRALAHIPYAAWKHSNRVIGSGDFMMTLGDDPTPKATAARLFPDFAGRGQDSWCSLDAPSRINRIGQVVQASGGAFLGAYGGIYSVSSEIIHGSVYGMSYFMSAYTGQARTTEAFQRGTEGQMIDILSAVGHAASGFISAYANIHQYGPLVLEEHELFRRLFKAATGDTWVGGDQPADIPQL
>LT985192.1|SPD83880.1|4762987_4763791_-|ATPase
MRDLMAELKELRLHGMAHAWEELAAQGEASTASSKWLLEHLLQQEQADRAVRSVNHQMNMAKLPMHRDLAGFEFSASSADARLVKELSSLDFTETAQNVVFIGGPGTGKTHLASALAVAGITVHNKRVRFFSTVDLVNLLEREKHDGKTGRIAQGLLRTDLVILDELGYLPFSQSGGALLFHLLSKLYEHTSVIITTNLSFSEWSSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSTLADQTKIKTRERKRKEADVVEDDEPF
>LT985192.1|SPD83881.1|4763783_4765292_-|Transposase-for-insertion-sequences-IS1326/IS1353
MISMEMMGKIRRMYFRDKLSLHQIAKRTGLSRNTIRKWIRAPETKQPVYQRRAAFNKLSPFHATLEQALKADSLRAKHNRRTAKALFEQIKAEGYDGGYSQLTAFIRAWRGEQGKSLRAFVPLTFALGEAFQFDWSEEGLLIGGLFRRIQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKTAVDKVSKGKGRTVNARFSVMCAHYLFDPDFCNVASGWEKGIVEKNVQDSRRRIWLDAQDCLFHTFDELNVWLGQRCRTLWSELPHPQYKGLTVADVLELERVEMMPMPSAFDGYVERTVRVSSTCLISVARNRYSVPCERVGQWVSSRLYPSRVVVVADETTIASHERLFDRDQVSYDWQHYIPLIERKPGALRNGAPFADLPKPLRLLKRGLRRHANGDRVMTQVLAAVPISGLDSVLVAVEIVLESGSLSADHILNVLARLTSTAPPPSVETNLQLKVAPAANTARYDQLRAKDEESRNA

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Crispr_ID: LT985192_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT985192_8

4954483-4954591

Orphan

Consensus_repeat	Method
CGCGCACCTATCGTTCTTCACGCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT985192_8

>merge|LT985192|8|4954483-4954591|CRISPRCasFinder
CGCGCACCTATCGTTCTTCACGCTCCAGCGTGGGGGCGCCGTTCTGGAAGCTTTGCGTCCACTGTTGGGTACGCGGTGCAACACGCGCACCTATCGTTCCTCACGCTCC

>LT985192|8|8|4954483-4954591|CRISPRCasFinder
CGCGCACCTATCGTTCTTCACGCTCC	AGCGTGGGGGCGCCGTTCTGGAAGCTTTGCGTCCACTGTTGGGTACGCGGTGCAACA
CGCGCACCTATCGTTCCTCACGCTCC

Protein	Signature genes	Signature genes Name	Protein_function
LT985192.1\|SPD84058.1\|4954743_4955112_+\|rplA-family-protein	unknown	unknown	gnl\|CDD\|223868
LT985192.1\|SPD84056.1\|4951485_4952937_+\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|234572
LT985192.1\|SPD84053.1\|4949752_4949908_-\|hypothetical-protein	unknown	unknown	unknown
LT985192.1\|SPD84064.1\|4960506_4963530_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377502
LT985192.1\|SPD84050.1\|4947487_4948090_-\|Maf-like-protein	unknown	unknown	gnl\|CDD\|234584
LT985192.1\|SPD84051.1\|4948157_4948649_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
LT985192.1\|SPD84059.1\|4955189_4956221_+\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|273039
LT985192.1\|SPD84048.1\|4942036_4945852_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273971
LT985192.1\|SPD84057.1\|4952947_4954393_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-B	unknown	unknown	gnl\|CDD\|235489
LT985192.1\|SPD84066.1\|4964002_4964356_-\|phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|225379
LT985192.1\|SPD84067.1\|4964644_4966750_-\|Polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
LT985192.1\|SPD84052.1\|4948641_4949709_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
LT985192.1\|SPD84055.1\|4951183_4951471_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C	unknown	unknown	gnl\|CDD\|178810
LT985192.1\|SPD84063.1\|4959411_4960428_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224017
LT985192.1\|SPD84049.1\|4946033_4947491_-\|Ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
LT985192.1\|SPD84065.1\|4963489_4963864_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371338
LT985192.1\|SPD84060.1\|4956252_4956636_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
LT985192.1\|SPD84062.1\|4957679_4959254_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
LT985192.1\|SPD84061.1\|4956632_4957574_-\|malate-transporter	unknown	unknown	gnl\|CDD\|223751
LT985192.1\|SPD84054.1\|4949940_4950978_-\|Rod-shape-determining-protein-MreB	unknown	unknown	gnl\|CDD\|237562

Protein	Function_ID	Function_description	E-value
LT985192.1\|SPD84058.1\|4954743_4955112_+\|rplA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	8.88342e-51
LT985192.1\|SPD84056.1\|4951485_4952937_+\|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
LT985192.1\|SPD84064.1\|4960506_4963530_+\|hypothetical-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	2.0517e-41
LT985192.1\|SPD84050.1\|4947487_4948090_-\|Maf-like-protein	gnl\|CDD\|234584	PRK00032, PRK00032, septum formation inhibitor Maf.	5.15298e-127
LT985192.1\|SPD84051.1\|4948157_4948649_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.84226e-26
LT985192.1\|SPD84059.1\|4955189_4956221_+\|conjugal-transfer-protein-TraR	gnl\|CDD\|273039	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein. This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General].	1.21171e-71
LT985192.1\|SPD84048.1\|4942036_4945852_-\|hypothetical-protein	gnl\|CDD\|273971	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane. [Hypothetical proteins, Conserved].	0
LT985192.1\|SPD84057.1\|4952947_4954393_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-B	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
LT985192.1\|SPD84066.1\|4964002_4964356_-\|phospholipid-binding-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	3.84632e-14
LT985192.1\|SPD84067.1\|4964644_4966750_-\|Polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
LT985192.1\|SPD84052.1\|4948641_4949709_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	2.04857e-99
LT985192.1\|SPD84055.1\|4951183_4951471_+\|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	3.39473e-39
LT985192.1\|SPD84063.1\|4959411_4960428_+\|SAM-dependent-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	3.66763e-58
LT985192.1\|SPD84049.1\|4946033_4947491_-\|Ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
LT985192.1\|SPD84065.1\|4963489_4963864_+\|hypothetical-protein	gnl\|CDD\|371338	pfam11006, DUF2845, Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.	5.74806e-26
LT985192.1\|SPD84060.1\|4956252_4956636_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	4.12288e-47
LT985192.1\|SPD84062.1\|4957679_4959254_-\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
LT985192.1\|SPD84061.1\|4956632_4957574_-\|malate-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.81523e-44
LT985192.1\|SPD84054.1\|4949940_4950978_-\|Rod-shape-determining-protein-MreB	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0

>LT985192.1|SPD84057.1|4952947_4954393_+|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-B
MQWEVVIGLEIHTQLSTQSKIFSGSATTFGSEPNTQASIVDLGMPGVLPVLNKEAVRMAVKFGLAVDAEIGQHNVFARKNYFYPDLPKGYQISQMELPIVGKGHLDITLEDGTVKRIGITRAHLEEDAGKSLHEDFQGMTGIDLNRAGTPLLEIVSEPDMRSAKEAVAYVKAIHAIVRYLGICDGNMAEGSLRCDCNVSIRPKGQVEFGTRCEIKNVNSFRFIEKAINSEIQRQIDLIEDGGKVIQQTRLYDPNTNETRAMRSKEEANDYRYFPDPDLLPVIIEDSFLEETRATLPELPPQKRERFQSQFGLSTYDASVLASSREQADYFEQVVSISGDAKLAANWVMVELGSLLNKQGLEIEQSPVSAEQLGGMLKRITDNTISGKIAKMVFEAMANGEGSADEVIDKRGLKQVTDSGAIESMLDEMLAANAEQVEQYRAADEAKRGKMFGFFVGQAMKASKGKANPQQVNELLKAKLEG
>LT985192.1|SPD84056.1|4951485_4952937_+|Glutamyl-tRNA(Gln)-amidotransferase-subunit-A
MHQMTLAEIARGLAEKKFSSEELTRVLLSRIATLDPQLNSFISLTEDLAITQAQAADARRAAGENGPLLGAPLAHKDLFCTQGIRTSCGSRMLDNFKAPYDATVVSKLASAGTVTLGKTNMDEFAMGSANESSHYGAVKNPWNLQCVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQDSTSIDEPVPDYSASLNTSLKGLRIGVPKEYFSAGLDPRIAQLVHESVKELEKLGAVVKEVSLPNLQHAIPAYYVIAPAEASSNLSRFDGVRFGYRCEDPKDLTDLYKRSRAEGFGPEVQRRIMVGAYALSAGYYDAYYLQAQKIRRLIKNDFMSAFAEVDVILGPTTPNPAWKIGAKTNDPIAEYLEDFYTITANLAGLPGLSMPAGFVDGLPVGVQLLAPYFQEGRLLNVAHQYQQVTDWHTRAPEGF
>LT985192.1|SPD84055.1|4951183_4951471_+|Aspartyl/glutamyl-tRNA(Asn/Gln)-amidotransferase-subunit-C
MALERSDVEKIAHLARLGLNDADIPRTTEALNSILGLVDQMQAVDTTGIEPLAHPLEASQRLREDAVTERNRRDTYQAIAPAVQDGLYLVPKVIE
>LT985192.1|SPD84054.1|4949940_4950978_-|Rod-shape-determining-protein-MreB
MFKKLRGMFSSDLSIDLGTANTLIYVRERGIVLNEPSVVAIRTHGNQKSVVAVGTEAKRMLGRTPGNIAAIRPMKDGVIADFSVCEKMLQYFINKVHENSFLQPSPRVLICVPCKSTQVERRAIRESALGAGAREVFLIEEPMAAAIGAGLPVEEARGSMVVDIGGGTTEIALISLNGVVYAESVRVGGDRFDEAIITYVRRNYGSLIGESTAERIKQEIGTAYPGGEVREVDVRGRNLAEGVPRAFTLNSNEVLEALQESLATIVQAVKSALEQSPPELASDIAERGLVLTGGGALLRDLDKLLAQETGLPVIVAEDPLTCVARGGGRALEMMDKHTMDLLSSE
>LT985192.1|SPD84053.1|4949752_4949908_-|hypothetical-protein
MQVAYVLPVCIVLTPKQGAYLFHLSRPVTYRMNNCQSKFDPTIACPGGAAY
>LT985192.1|SPD84052.1|4948641_4949709_-|rod-shape-determining-protein-MreC
MLAVLSVALMVVDARFTILKPVRSQMSMVLMQSYWIVDLPQRLYQGVASQFGSRTELIAENEKLKTEALLLQGRLQKLAALTEQNVRLRELLNSSALVNEKVEVAELIGMDPNPFTHRIIINKGERDGVVLGQPVLDARGLMGQVVELMPYTSRVLLLTDTTHSIPVQVNRNGLRAIASGTGNPERLELRHVADTADIKEGDLLVSSGLGQRFPAGYPVATVKEVIHDSGQPFAIVRAVPTAALNRSRYLLLVFSDGRSPEERAADAAQAQESIDKGIEPSVMATLPPPTPAFPMWPQATVPVFPGSTATHKPAAQSTTPAPAAAPVTPARPAARPAASQPPASRPSTAREPIDG
>LT985192.1|SPD84051.1|4948157_4948649_-|rod-shape-determining-protein-MreD
MVSHVSGRNGWVVWLTFAIGLLLSVSPLPQFMEIFRPLWLALLLTFWVLALPHKYGMTTAWILGLMEDVLYGTLLGQNALILSLITFLVMSLQQRLRMFPMWQQCLVLLVVFGLAQLAQLWLSALTGNRQPTLALVLPALVSALLWPWISYGLRGLRKRLKIN
>LT985192.1|SPD84050.1|4947487_4948090_-|Maf-like-protein
MPSLYLASGSPRRRELLTQIGVSFTVLNAQIDETPFDHETPAAYVERLALGKAQAGLSVLAAEQQACVMGADTAVVLDGRILGKPADEADALAMLTALSGREHEVMTAVALSDRHRSETRIVTSRVRFRPIQPHEAQAYWASGEPADKAGGYAIQGLAAIFVEGLQGSYSGVVGLPLCETAELLGHFGIPCWQCLEGDES
>LT985192.1|SPD84049.1|4946033_4947491_-|Ribonuclease-G
MSEEILINITPMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFIDIGLDRAAFIHASEISMREGPAVESIASLVHDGQSLVVQVTKDPIGSKGARLTTQLSIPSRYLVYMPRTAHVGISLKIEDEAERERLKKVVSDCVALEGIKEAGGFILRTAAEGAGADEILMDIRYLRRLWDQIGEQIKTVSPPTVIYEDLGLALRTLRDLVSPRIEKIRIDSRETFQKTTQFVAELMPEIADRLEHYPGERPIFDLYGVEDEIQKALERKVPLKSGGYLVVDPAEAMSTIDVNTGAFVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDGEHQRQVLRTLEKQLERDHAKTNIIGITELGLVQMTRKRTRESLEQVLCEPCHCCAGRGKLKTPETICYEIFREILREARAYQAVGYRVLANQRVVDRLLDEESGNVAELESFIGRTIRFQVETMYSQEQYDVVLL
>LT985192.1|SPD84048.1|4942036_4945852_-|hypothetical-protein
MGRLPRLVATLTRWSLSLCALVLVLAALYVSLGRQLTPLVAEYRVDVETRASSALGMPLSIGSLEGSWSRFAPVFLAHDVMVGEGSSAVRLDRVRVVPDLWESLLARQVRIAHLEVDGLQFMLRQDKEGNWSVQGLPVRNDSPFDPGQVLEQMQMVSHLSLLDSQVTVQPFDAAPLTLTYVNLSLATGSYHQRLDARLTLPDGQPFALNVRSRIQASQWKDGEADFYASLPQSDWARWLPKSLTREWTLSKLQAGGELWMSWGKGTVQSATARLNAPHVKGVYAGRKPSTVDNLALNAWFARTDTGFDLNLDSLAMSLGDKRWESRLQLTQTAATPDSEELWHVQADRLDLTPLTPLIDSLAPLPEKAMAVVDGLKVTGGLRNVLLDYRPQAAGDKRLSFAANLDKVGFNAYRGAPAAGNVTGAISGDLGQGELRLDTNDFMLHLDPIFAKPWRYQKANARLTWKLDDQAFTLIAPYIKVLGDEGKIAADFLIRIHLSHEQEDYMDLRVGMVDGDGRYTSKYLPTALSPELDHWLRTAVVSGAVKQGFFQYQGSLNKSSPDTARVISLFFDVSNATLAFQPGWPSLTGVDGKVYVENSGVRVKASKGQLLDTKVSNVLVNIPHVPAGQDSHLLVDGSFSGNLIDGLKILQQAPIGTASTFAGWTGEGPLDGKLKLDIPLAKGVEPKVVVDFSTDNARLKLADPVLELTRLKGDFRFDSAKGLSGKGIKAQAFDRPVTAEIAAEGKPGDNVTRIVANGQITVKRLTDWLSVTQPLPVSGDLPYQLQLTLDSKDSPLVINSTLKGVAIDLPAPFGKTAEEERPSEFRMTLQGAERRLGAAYNDQANFAFAAPNGKFADGRGELYLGRGGAIVPDAKGLRIRGELSELDVAPWQELAGRYTGNDPGGSAKQLLNSVDLQIGKLTAMGTTLDNVRVQLQRNAAAWALSLDSALAKGTAVLPDAKSAPIGINMLYVRLPASDPNAAVVENAPDPLADIDPHNIPALDVKIAQLFQGDQLLGAWSLKTRPTATGMRMSDLSLGLKGILLEGDGAWEGIPGSSSSSFKGRVAGKNLADVLKAWNFAPTVTSESFEMNVDGRWPGSPAWVGLKRYSGSLDATLNRGQFVEVEGGAQALRVFGLLNFNSIGRRLRLDFSDLLGKGLSYDRVKGLLVASDGVYVTRNPITLTGPSSNLELNGTLDMVRDRVDAKLLVTLPVTNNLPIAALIVGAPAIGGALFLVDKLLGDRVARFASVQYKVEGPWKEPKITFDKPFEKPQ
>LT985192.1|SPD84058.1|4954743_4955112_+|rplA-family-protein
MRRLIFACSLLTLLAGCANHIIDPHGYDETGTAAYYGARHHGNRTASGEPFNQNALTAAHRQLPFGTRVKVTNLDNDRSVVVRINARGPHTRGRLIDVSREAAEQLGMLRSGTAPVRVQALD
>LT985192.1|SPD84059.1|4955189_4956221_+|conjugal-transfer-protein-TraR
MFSGLLLLLIGAELSVRAAVHLAAIFKVRPLLIGMTVVAMGTSAPQMAVSLQAAFADNTDIAVGSVIGGNIFNVLVILGLCALIIPLRVARQVLHIDIPLMIGACLLAIGLSWNGEFSKFDGALLLAGLLVCLIVIIRQGGHTPRHGHAETTEKPRTFTRILMLAAGLLLLTAGGHLLVDASVVIAIHLGLSERIVGLTIIAIGTSLPALMTSLIAAFRGERDIAVGNVIGSNLFNLLGVLGVTALFAPVPLTISPNAMVFDLPIMLGVSLLCVPLFYSGYRIDRMEGLFLLSLYLTYGLHILAISTGMALAERLETKMLTLVLPVLGVVVAWGTIRAWRRQH
>LT985192.1|SPD84060.1|4956252_4956636_+|4-carboxymuconolactone-decarboxylase
MTDKTISEGEQIRRQVMGDVYVDRALGNATEFSQPLQDFVNEHAWGSVWSREGLPLKTRSLITLATLTALKCPQELKGHVRGALNNGCTVEEIREALLHCAVYAGVPAAIDAFRAAQEVIDSYVKPD
>LT985192.1|SPD84061.1|4956632_4957574_-|malate-transporter
MLAIFLQTLNITAPVFAMLFLGVLLKRIGAINDGFIVAASGLVFNVTMPALLFLGIIHADLRAALQPGLLIFFSVATLLSFAFAWGWAIWRCPQEERGVYVQGAFRGNNGVIGLALAASMYGPYGISLGAILAALVIVFYNTLSTIVLAVYSPVIKSDPWSVFKSVLANPLIISVIIASPFAYFSIGLPRWLETSGSYLAQMTLPLALICIGGTLSLASLRKSGSLAISASVMKMITLPLLCTLAAWLVGFRGAELGILFLYFASPTAAASYIMARTANGNYELAAAIIVITTLAAAVTTNVGIFILQWGGWI
>LT985192.1|SPD84062.1|4957679_4959254_-|alkaline-phosphatase
MSQFDLKRRRVIQAVGAGLLLPGLAPAVIASVQDRPKMVDGVQSGDVLGDKAMVWSRSDRPSRMVVEWDTRSMFTQPRRVVSALADPRTDFTARVELSGLPVDQAIFYRVSFEDAQSGVASEPWFGHLRSTPQQRRDIRFVWSGDTVGQGFGINPDVGGMRIYEAMRLRLPDFFIHSGDTIYADGPVPEQITTEGGRIWRNLTTEAKSKVAETLDEYRGNYRYNLMDENLRRFNAEVPQIWQWDDHEVTNNWSPSKQLDGRYKVKDIQLLSSRARQAYLEYAPLRLQQADNGGRIYRKIPYGPMLDVFVLDMRSYRDGNDANLAEKPGPTTAFLGREQLDWLKRELNASRAQWKVIAADMPIGLGVPDGEVSPGVARWEAIANGNDGPALGRELEVAELLAYLRAQKIRDCVWLTADVHYCAAHHYQPDRAVFQDFDPFWEFVAGPLNAGSFGPNVLDKTFGPELVFQKAPPAQNTSPFAGYQFFGEVNIDGQTGEMSVALRDLDGVSVFERKLQPTVEISRIV
>LT985192.1|SPD84063.1|4959411_4960428_+|SAM-dependent-methyltransferase
MSSLNQALSVALDNRQSLLGELHQQGTDCYRLFHGSQEGASGLTIDRYGPQLLVQSFHTRLDRDALLALHEQVNARLGLETLLVYNDRSQGNSRVDRQDTVYKADEAALADHIGHEWGLNYRVRGRHAGQDPLLFLDLRNTRGWVKQHSAGKSVLNLFAYTCGVGLSAAAGGASEVCNLDFAEGNLAVGRENGALNPQLPPMQFIQSDYFPAIRQLAGLPIAARRSQQLPSYMKLQQRQYDLVLLDPPAWAKSAFGTVDLLRDYQSLLKPALLTTADGGVLICCNNLAKVSMQDWREQVLRCATKAGRPVRDCQEMLPAKDFPSLDNQPPLKTLILQL
>LT985192.1|SPD84064.1|4960506_4963530_+|hypothetical-protein
MPYSKGFQKRETPLPMSRGLKRTLGSLLTVIVLYSLLGFFILPGVALRIANQQLANYATVPAKLERLEFNPYTLELTLWGLNIGTPGKEQVAFEKLYANLQIDSLWTRALHLQRIELIKPKTELLFDKQGKLNLAQLFKLPASEPAKDEPPGKPFPLRIDEIKLADGYVHFQDMRPSQPIEFLYDTLNFELKNLSTLPEDNADMTLVAAGPDGGQIDWVGRISLIPITSEGTLKVTDSKMKLWWPYVRDALPLALEDGVLNFSTAYTLNLAKETELKLTNVSASVAPFALNTPDGRPLVRLQRLDVSETSVNLAKQLVTVGKIRSQKLETWAAREADGQLDWQKLFASQPGKPAAPQTPAVDDKAAEPAPTTDASAKASAKPATQSTPWQVLLRDVQLRNYMVHLADRVPQEPVALDVGPLNLDIQNFDSLNKSPFTLKLDTGLGKQGNLTAAGDVNLNPVSAQLNVTTRDIDLRLAQAYISPFIRLEMRSGMLGSDLAVNLKSTEPLAFSVTGKAQVNQLHTLDTLKQRDFLKWQQLQLEGLDYQHGTGLSIAKVNMDQPYARFMINEDRTTNVDDLLIPQPDDKTASQPKTARTQPKAKAKADNPLAIYVGEVNIMDGSANFADMTLTPNFATAVQQLNGRIGTIDNRKATPAPVDIQGKVDRYAPVTIKGSLNPFDPMASLDITTSFKRVELTNLTPYSGKFAGFRIRKGRLNLDLHYLITKGQLKAQNKVLVEQLQLGERVDSPDALDLPIRLAVALLKDTQGRISLELPIEGDLNNPQFSVMPIVWQTLRNLVLRAAQAPFKMLGGLVAGGSSEDLGSVSFAPGSSDLSAEAQSALDKLSVALKERPDLKLEIEGTSAASSDGPLLAQQRLEREYQYTYYKILQRRGDKVPARAGLIQVPEDEKAPMLEGIYRTRLKQQPPAEWANLGKEQRANQMRAAVLKFWSSNEVLLRELGQGRASSIKDYLVDKGKLEDARVYFVDARLGQAQPDGKVISPLHLDSE
>LT985192.1|SPD84065.1|4963489_4963864_+|hypothetical-protein
MVKSSAPSTSTVNEALARTRIKLLINLTLATLAGSVATSSYATSTLRCGNQLVSTWDRAFEVQQKCGEPVSQEVLGTQETFNSNYRRSEAVRIEEWIYGPDNGMYRYLRFEGGRLVRIESKRRT
>LT985192.1|SPD84066.1|4964002_4964356_-|phospholipid-binding-protein
MKKFAIAAATATALTLTMANAAFAQTSAQAPMVLAANTTTQEVKEDTSDTWITTKVKADLLTEKGIPGSDIKVETNKGVVSLSSMVKVTEAQKNTAVAITKKIKGVKDVSAAGLKAE
>LT985192.1|SPD84067.1|4964644_4966750_-|Polyribonucleotide-nucleotidyltransferase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTSKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVVAGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEATALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGEIEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFGESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

121773 : 155987

uncultured_Caudovirales_phage(20.0%)

integrase,transposase

attL 127057:127070|attR 137665:137678

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD79672.1\|121773_122808_+\|transposase	putative family 20 transposase	NA	NA	NA	NA
SPD79673.1\|123268_123853_-	tyrosine phosphatase	NA	NA	NA	NA
SPD79674.1\|123821_124175_-	tyrosine phosphatase	NA	NA	NA	NA
SPD79675.1\|124600_125635_+\|transposase	putative family 20 transposase	NA	NA	NA	NA
SPD79676.1\|126062_126743_-	hypothetical protein	NA	NA	NA	NA
127057:127070	attL	NA	NA	NA	NA
SPD79677.1\|127336_128449_-	Transposase for insertion sequence element IS801	NA	NA	NA	NA
SPD79678.1\|128945_130772_-	hypothetical protein	NA	NA	NA	NA
SPD79679.1\|130980_132900_+	hypothetical protein	NA	NA	NA	NA
SPD79680.1\|133313_133646_+	hypothetical protein	A0A2H4J9H6	uncultured_Caudovirales_phage	1.6e-13	45.0
SPD79681.1\|133830_134793_-\|integrase	integrase	A0A142F1N9	Bacillus_phage	1.6e-08	23.3
SPD79682.1\|135131_135380_+	Orf29	NA	NA	NA	NA
SPD79683.1\|135392_135743_+	hypothetical protein	NA	NA	NA	NA
SPD79684.1\|135849_136254_-	hypothetical protein	NA	NA	NA	NA
SPD79685.1\|136243_139066_-	sugar-binding protein	NA	NA	NA	NA
137665:137678	attR	NA	NA	NA	NA
SPD79686.1\|139062_139956_-	YD repeat-containing protein	NA	NA	NA	NA
SPD79687.1\|140580_142089_-	sugar-binding protein	NA	NA	NA	NA
SPD79688.1\|143021_143327_+	hypothetical protein	NA	NA	NA	NA
SPD79689.1\|143419_144631_+	hypothetical protein	NA	NA	NA	NA
SPD79690.1\|144899_145505_-	DNA resolvase	A0A286S1P7	Klebsiella_phage	9.2e-15	33.9
SPD79691.1\|145598_148487_+\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	3.5e-173	35.8
SPD79692.1\|148528_149434_-	beta-lactamase	V5R9Q0	Mycobacterium_phage	2.3e-06	24.5
SPD79693.1\|150026_151112_-	hypothetical protein	NA	NA	NA	NA
SPD79694.1\|151262_151484_+	hypothetical protein	NA	NA	NA	NA
SPD79695.1\|152017_153052_+\|transposase	putative family 20 transposase	NA	NA	NA	NA
SPD79696.1\|153649_153970_-	tyrosine phosphatase	NA	NA	NA	NA
SPD79697.1\|153969_154527_-	tyrosine phosphatase	NA	NA	NA	NA
SPD79698.1\|154952_155987_+\|transposase	putative family 20 transposase	NA	NA	NA	NA

DBSCAN-SWA_2

174281 : 207191

Escherichia_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD79715.1\|174281_175808_-\|transposase	transposase IS66	A0A218MNE7	uncultured_virus	1.2e-122	47.6
SPD79716.1\|175891_176227_-	hypothetical protein	NA	NA	NA	NA
SPD79717.1\|176223_176556_-\|transposase	transposase	NA	NA	NA	NA
SPD79718.1\|176996_177428_-	hypothetical protein	NA	NA	NA	NA
SPD79719.1\|177427_178186_-	hypothetical protein	NA	NA	NA	NA
SPD79720.1\|178626_179052_-	hypothetical protein	NA	NA	NA	NA
SPD79721.1\|179052_179484_-	membrane protein	NA	NA	NA	NA
SPD79722.1\|179494_179998_-	hypothetical protein	NA	NA	NA	NA
SPD79723.1\|181059_181869_-	Insertion sequence IS21 putative ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-77	62.0
SPD79724.1\|181865_182867_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	6.3e-77	46.5
SPD79725.1\|183624_184128_-	hypothetical protein	NA	NA	NA	NA
SPD79726.1\|184164_186336_-	membrane protein	NA	NA	NA	NA
SPD79727.1\|186906_187023_+	hypothetical protein	NA	NA	NA	NA
SPD79728.1\|187252_187915_+	hypothetical protein	NA	NA	NA	NA
SPD79729.1\|187911_188829_+	hypothetical protein	NA	NA	NA	NA
SPD79730.1\|188825_190595_+	nucleotidyltransferase	NA	NA	NA	NA
SPD79731.1\|190795_192169_+\|transposase	transposase	NA	NA	NA	NA
SPD79732.1\|193117_193309_+	hypothetical protein	NA	NA	NA	NA
SPD79733.1\|193395_193668_-	hypothetical protein	NA	NA	NA	NA
SPD79734.1\|193858_194434_+	hypothetical protein	NA	NA	NA	NA
SPD79735.1\|194612_195053_-	hypothetical protein	NA	NA	NA	NA
SPD79736.1\|195113_195890_-	hypothetical protein	NA	NA	NA	NA
SPD79737.1\|196707_197742_-\|transposase	putative family 20 transposase	NA	NA	NA	NA
SPD79738.1\|197852_198197_-	Transposase for transposon Tn501	A0A1B0V7H9	Salmonella_phage	1.5e-54	88.6
SPD79739.1\|198435_198618_-	hypothetical protein	NA	NA	NA	NA
SPD79740.1\|198799_201055_+	peptidase	NA	NA	NA	NA
SPD79741.1\|201334_202318_-	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	2.3e-92	54.7
SPD79742.1\|202523_203141_-	type III effector	NA	NA	NA	NA
SPD79743.1\|203153_203549_-	type III chaperone protein ShcF	NA	NA	NA	NA
SPD79744.1\|203765_204749_+	Transposase InsH for insertion sequence element IS5H	Q38213	Escherichia_phage	2.3e-92	54.7
SPD79745.1\|204916_205249_+\|transposase	transposase	NA	NA	NA	NA
SPD79746.1\|205245_205581_+	hypothetical protein	NA	NA	NA	NA
SPD79747.1\|205664_207191_+\|transposase	transposase IS66	A0A218MNE7	uncultured_virus	1.2e-122	47.6

DBSCAN-SWA_3

1746222 : 1752711

uncultured_Mediterranean_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD81134.1\|1746222_1746972_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-65	50.2
SPD81135.1\|1746971_1747649_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.0e-44	53.7
SPD81136.1\|1747857_1748724_+	NlpD/LppB-like lipoprotein	I3PV79	Clostridium_phage	5.5e-13	35.3
SPD81137.1\|1748827_1749835_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	8.6e-34	35.8
SPD81138.1\|1750423_1750756_+\|transposase	transposase	NA	NA	NA	NA
SPD81139.1\|1750752_1751088_+\|transposase	transposase	NA	NA	NA	NA
SPD81140.1\|1751124_1752144_+\|transposase	transposase IS66	A0A218MNE7	uncultured_virus	2.1e-56	41.7
SPD81141.1\|1752168_1752711_+\|transposase	transposase	A0A218MNE7	uncultured_virus	1.6e-55	58.3

DBSCAN-SWA_4

2190207 : 2266294

uncultured_Caudovirales_phage(39.47%)

bacteriocin,tail,portal,capsid,plate,terminase,holin,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD81542.1\|2190207_2190603_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
SPD81543.1\|2190580_2191033_+	hypothetical protein	NA	NA	NA	NA
SPD81544.1\|2191150_2191549_-	hypothetical protein	NA	NA	NA	NA
SPD81545.1\|2192266_2192833_+	isochorismatase	NA	NA	NA	NA
SPD81546.1\|2192846_2195591_-	helicase	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	1.2e-42	29.6
SPD81547.1\|2195665_2196190_-	hypothetical protein	NA	NA	NA	NA
SPD81548.1\|2196201_2199792_-	Transcription-repair-coupling factor	NA	NA	NA	NA
SPD81549.1\|2199844_2201308_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
SPD81550.1\|2201454_2202717_+	MFS transporter	NA	NA	NA	NA
SPD81551.1\|2202801_2204094_-	Citrate-proton symporter	Q6JIH2	Burkholderia_virus	1.9e-70	38.9
SPD81552.1\|2204471_2205503_+	thiamine biosynthesis lipoprotein ApbE	NA	NA	NA	NA
SPD81553.1\|2205669_2207064_+	Soluble pyridine nucleotide transhydrogenase	NA	NA	NA	NA
SPD81554.1\|2207106_2207829_-	glycerophosphoryl diester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	2.7e-05	38.6
SPD81555.1\|2207901_2208489_-	hypothetical protein	NA	NA	NA	NA
SPD81556.1\|2208591_2209842_+	Lipoprotein-releasing system transmembrane protein LolC	NA	NA	NA	NA
SPD81557.1\|2209834_2210533_+	Lipoprotein-releasing system ATP-binding protein LolD	G9BWD6	Planktothrix_phage	4.7e-39	42.1
SPD81558.1\|2210609_2211854_+	Lipoprotein-releasing system transmembrane protein LolC	NA	NA	NA	NA
SPD81559.1\|2211984_2212815_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	A0A2I7SAX1	Vibrio_phage	1.1e-37	37.2
SPD81560.1\|2213056_2213326_-	chromosome segregation ATPase	NA	NA	NA	NA
SPD81561.1\|2213429_2214038_-	hypothetical protein	NA	NA	NA	NA
SPD81562.1\|2214237_2214939_+	lipoprotein	NA	NA	NA	NA
SPD81563.1\|2215027_2215327_-	pilus assembly protein	NA	NA	NA	NA
SPD81564.1\|2215592_2216777_+	chemotaxis protein CheY	NA	NA	NA	NA
SPD81565.1\|2216773_2217259_+	anti-anti-sigma factor	NA	NA	NA	NA
SPD81566.1\|2217345_2218272_-	Transaldolase	A0A1D7SEQ4	Cyanophage	6.5e-12	34.4
SPD81567.1\|2218480_2220850_-	ligand-gated channel	NA	NA	NA	NA
SPD81568.1\|2221090_2222335_+	glutamate carboxypeptidase	NA	NA	NA	NA
SPD81569.1\|2222469_2222913_+	ultraviolet light resistance protein RulA	A0A1L5C2A3	Pseudoalteromonas_phage	2.2e-10	33.7
SPD81570.1\|2222991_2223231_+	hypothetical protein	NA	NA	NA	NA
SPD81571.1\|2223365_2224388_+	sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	3.0e-111	60.9
SPD81572.1\|2224545_2225349_-	ATPase	A0A2L1IVB6	Escherichia_phage	3.4e-33	37.0
SPD81573.1\|2225341_2226850_-	Transposase for insertion sequences IS1326/IS1353	NA	NA	NA	NA
SPD81574.1\|2226944_2227313_-\|transposase	transposase	Q38213	Escherichia_phage	9.1e-34	55.1
SPD81575.1\|2227870_2228995_+	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	1.0e-43	33.1
SPD81576.1\|2229004_2229739_-	peptidase S24	Q94MM0	Bordetella_phage	8.8e-28	45.2
SPD81577.1\|2230388_2230601_+	hypothetical protein	NA	NA	NA	NA
SPD81578.1\|2230631_2230907_+	hypothetical protein	NA	NA	NA	NA
SPD81579.1\|2231116_2232781_+	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	1.3e-140	45.9
SPD81580.1\|2232805_2233336_+	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	1.8e-35	47.1
SPD81581.1\|2233415_2233688_+	hypothetical protein	NA	NA	NA	NA
SPD81582.1\|2234224_2234539_+\|holin	holin	A0A1V0DYG4	Shewanella_phage	8.7e-09	37.8
SPD81583.1\|2234535_2234922_+	hypothetical protein	NA	NA	NA	NA
SPD81584.1\|2235092_2235356_-	hypothetical protein	NA	NA	NA	NA
SPD81585.1\|2235596_2236082_+	DNA packaging protein	A0A2D1GMW4	Marinobacter_phage	5.8e-20	38.5
SPD81586.1\|2236041_2238051_+\|terminase	terminase	A0A2D1GMT1	Marinobacter_phage	7.7e-167	50.9
SPD81587.1\|2238061_2238277_+	hypothetical protein	NA	NA	NA	NA
SPD81588.1\|2238279_2239881_+\|portal	portal protein, lambda family	A0A067ZJA4	Vibrio_phage	1.1e-94	39.4
SPD81589.1\|2239883_2241116_+	hypothetical protein	A0A2H4EXF7	Aeromonas_phage	1.4e-46	41.6
SPD81590.1\|2241129_2241480_+	hypothetical protein	NA	NA	NA	NA
SPD81591.1\|2241492_2242521_+\|capsid	capsid protein	A0A0C5ABI0	Bacteriophage	6.9e-71	41.6
SPD81592.1\|2242522_2242744_+	hypothetical protein	NA	NA	NA	NA
SPD81593.1\|2242746_2243061_+	hypothetical protein	NA	NA	NA	NA
SPD81594.1\|2243057_2243714_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	7.2e-74	65.9
SPD81595.1\|2243706_2244219_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.2e-49	57.4
SPD81596.1\|2244215_2244800_+\|plate	baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	7.9e-56	59.5
SPD81597.1\|2244843_2245122_+	hypothetical protein	NA	NA	NA	NA
SPD81598.1\|2245125_2245452_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.6e-34	64.8
SPD81599.1\|2245448_2246330_+\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	4.5e-103	66.4
SPD81600.1\|2246331_2246937_+	Tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	3.4e-78	69.3
SPD81601.1\|2246933_2248556_+\|tail	tail fiber protein H	A4PE45	Ralstonia_virus	4.7e-66	45.8
SPD81602.1\|2248556_2248988_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	1.5e-27	44.7
SPD81603.1\|2249063_2250227_+\|tail	tail protein	A0A2H4J869	uncultured_Caudovirales_phage	1.9e-181	81.9
SPD81604.1\|2250239_2250749_+	hypothetical protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.7e-67	73.7
SPD81605.1\|2250765_2251068_+	hypothetical protein	NA	NA	NA	NA
SPD81606.1\|2251206_2253945_+\|tail	tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	5.3e-110	41.9
SPD81607.1\|2253954_2254800_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.6e-87	58.2
SPD81608.1\|2254774_2254981_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	5.8e-22	71.6
SPD81609.1\|2255038_2255179_+	hypothetical protein	NA	NA	NA	NA
SPD81610.1\|2255462_2256524_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	3.3e-145	73.5
SPD81611.1\|2256562_2257108_+	pyocin R, lytic enzyme	A0A2H4JHX4	uncultured_Caudovirales_phage	2.4e-67	70.6
SPD81612.1\|2257311_2258106_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	5.4e-100	65.8
SPD81613.1\|2258399_2258723_+	hypothetical protein	NA	NA	NA	NA
SPD81614.1\|2259232_2259415_-	hypothetical protein	NA	NA	NA	NA
SPD81615.1\|2259655_2261308_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-33	34.9
SPD81616.1\|2261903_2263928_+	hypothetical protein	NA	NA	NA	NA
SPD81617.1\|2264040_2265171_-	chorismate mutase	A0A2K8I325	Pseudomonas_phage	2.1e-145	67.2
SPD81618.1\|2265355_2266294_+\|tRNA	tRNA-dihydrouridine synthase A	NA	NA	NA	NA

DBSCAN-SWA_5

3297995 : 3364708

Pseudomonas_phage(60.87%)

integrase,tail,capsid,terminase,holin,protease,head,tRNA

attL 3353261:3353277|attR 3378273:3378289

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD82531.1\|3297995_3299495_-\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
SPD82532.1\|3299487_3299880_-	cupin	NA	NA	NA	NA
SPD82533.1\|3300214_3301180_-\|integrase	integrase	NA	NA	NA	NA
SPD82534.1\|3301412_3301886_+	hypothetical protein	NA	NA	NA	NA
SPD82535.1\|3301891_3302875_-	Acrylyl-CoA reductase AcuI	NA	NA	NA	NA
SPD82536.1\|3302925_3303513_-	Transcriptional regulator AcuR	NA	NA	NA	NA
SPD82537.1\|3303704_3304784_+	2-nitropropane dioxygenase	NA	NA	NA	NA
SPD82538.1\|3304885_3305653_+	Molybdate-binding periplasmic protein	NA	NA	NA	NA
SPD82539.1\|3305653_3306334_+	Molybdenum transport system permease protein ModB	NA	NA	NA	NA
SPD82540.1\|3306337_3307426_+	Molybdenum import ATP-binding protein ModC	G9BWD6	Planktothrix_phage	5.8e-20	32.3
SPD82541.1\|3307513_3308584_+	DNA topoisomerase	A0A0G2Y4T8	Acanthamoeba_polyphaga_mimivirus	3.3e-44	33.7
SPD82542.1\|3309849_3310470_-	chitin-binding protein	NA	NA	NA	NA
SPD82543.1\|3310754_3311141_-	glyoxalase	NA	NA	NA	NA
SPD82544.1\|3311142_3312156_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
SPD82545.1\|3312383_3313022_-	isochorismatase	NA	NA	NA	NA
SPD82546.1\|3313215_3313593_+	hypothetical protein	NA	NA	NA	NA
SPD82547.1\|3313893_3314475_+	hypothetical protein	A0A2H4J5W2	uncultured_Caudovirales_phage	4.6e-40	47.6
SPD82548.1\|3314894_3315080_-	hypothetical protein	NA	NA	NA	NA
SPD82549.1\|3315574_3315787_+	hypothetical protein	NA	NA	NA	NA
SPD82550.1\|3315952_3317197_-	hypothetical protein	A0A059VA35	Pseudomonas_phage	3.8e-201	84.5
SPD82551.1\|3317193_3317412_-	hypothetical protein	NA	NA	NA	NA
SPD82552.1\|3317429_3317960_-	hypothetical protein	A0A059VF51	Pseudomonas_phage	5.7e-61	79.6
SPD82553.1\|3317956_3318232_-	pyocin R, lytic enzyme	A0A059VA40	Pseudomonas_phage	4.9e-40	86.7
SPD82554.1\|3318210_3318456_-	hypothetical protein	A0A059VA40	Pseudomonas_phage	2.0e-24	92.1
SPD82555.1\|3318516_3318885_-	hypothetical protein	A0A059VFX9	Pseudomonas_phage	5.2e-29	72.6
SPD82556.1\|3319222_3320326_-\|tail	tail fiber protein	A0A059VJZ6	Pseudomonas_phage	1.8e-157	77.5
SPD82557.1\|3320353_3321016_-	hypothetical protein	A0A059VF40	Pseudomonas_phage	5.9e-124	97.3
SPD82558.1\|3321012_3321381_-	hypothetical protein	A0A059VJS9	Pseudomonas_phage	1.1e-60	94.3
SPD82559.1\|3321377_3324998_-	hypothetical protein	A0A2D1GNE3	Pseudomonas_phage	0.0e+00	68.2
SPD82560.1\|3325052_3325640_-	hypothetical protein	A0A2D1GNM2	Pseudomonas_phage	1.5e-75	74.6
SPD82561.1\|3325636_3326419_-	hydrolase Nlp/P60	A0A2D1GNP8	Pseudomonas_phage	6.7e-119	73.1
SPD82562.1\|3326421_3327120_-\|tail	tail protein	A0A2D1GNF3	Pseudomonas_phage	1.3e-108	81.4
SPD82563.1\|3327275_3327530_+	hypothetical protein	NA	NA	NA	NA
SPD82564.1\|3327613_3327871_+	hypothetical protein	NA	NA	NA	NA
SPD82565.1\|3328063_3328369_-	hypothetical protein	A0A2D1GNJ1	Pseudomonas_phage	3.5e-15	58.1
SPD82566.1\|3328368_3330939_-\|tail	tail tape measure protein	A0A2H4PI09	Pseudomonas_phage	9.5e-154	45.2
SPD82567.1\|3330994_3331672_-	hypothetical protein	NA	NA	NA	NA
SPD82568.1\|3331931_3332369_-\|tail	phage tail assembly protein	K7PJU9	Enterobacteria_phage	8.0e-37	65.0
SPD82569.1\|3332378_3332876_-	hypothetical protein	H2BDC0	Pseudomonas_virus	4.7e-57	66.5
SPD82570.1\|3332940_3333309_-	hypothetical protein	A0A1J0GUW9	Halomonas_phage	3.2e-39	62.7
SPD82571.1\|3333308_3333794_-	hypothetical protein	A0A0U3TGT7	Pseudomonas_phage	1.6e-54	66.0
SPD82572.1\|3333786_3334125_-\|head,tail	head-tail adaptor protein	A0A1J0GUY4	Halomonas_phage	1.6e-29	60.0
SPD82573.1\|3334124_3334601_-	hypothetical protein	Q6JIM5	Burkholderia_virus	3.1e-10	33.1
SPD82574.1\|3334604_3335021_-	hypothetical protein	NA	NA	NA	NA
SPD82575.1\|3335071_3336457_-\|capsid	capsid protein	H2BDB0	Pseudomonas_virus	1.2e-131	64.0
SPD82576.1\|3336468_3337311_-	peptidase	A0A1V0E8B8	Vibrio_phage	3.9e-88	62.0
SPD82577.1\|3337314_3338625_-	histone H1	A0A1V0E8B9	Vibrio_phage	5.4e-137	55.8
SPD82578.1\|3338617_3338782_-	putative membrane protein	Q9MCB1	Pseudomonas_phage	4.2e-07	61.5
SPD82579.1\|3338778_3340512_-\|terminase	putative terminase large subunit	A0A2D1GNU5	Pseudomonas_phage	0.0e+00	91.3
SPD82580.1\|3340512_3340998_-\|terminase	terminase	A0A2D1GNP3	Pseudomonas_phage	3.6e-78	90.1
SPD82581.1\|3341165_3341561_-	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	3.0e-59	79.2
SPD82582.1\|3341551_3341791_-	hypothetical protein	NA	NA	NA	NA
SPD82583.1\|3341930_3342179_+	hypothetical protein	NA	NA	NA	NA
SPD82584.1\|3342347_3342737_-	hypothetical protein	NA	NA	NA	NA
SPD82585.1\|3342733_3343051_-\|holin	holin	NA	NA	NA	NA
SPD82586.1\|3343338_3344142_+\|protease	Cysteine protease avirulence protein AvrPphB	NA	NA	NA	NA
SPD82587.1\|3344256_3344640_-	hypothetical protein	A0A1W6JTD2	Pseudomonas_phage	3.1e-32	51.6
SPD82588.1\|3344642_3344963_-	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	2.8e-31	62.3
SPD82589.1\|3344982_3346263_-\|integrase	integrase	A0A2D1GND4	Pseudomonas_phage	5.0e-220	86.4
SPD82590.1\|3346259_3346691_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.3e-50	70.6
SPD82591.1\|3346687_3346984_-	Prophage PssSM-03, Orf40	A0A2D1GNQ4	Pseudomonas_phage	3.6e-41	83.3
SPD82592.1\|3346980_3347469_-	replication P family protein	NA	NA	NA	NA
SPD82593.1\|3347648_3348422_-	hypothetical protein	NA	NA	NA	NA
SPD82594.1\|3348626_3349049_+	hypothetical protein	NA	NA	NA	NA
SPD82595.1\|3348858_3349338_-	hypothetical protein	NA	NA	NA	NA
SPD82596.1\|3349485_3349707_-	hypothetical protein	NA	NA	NA	NA
SPD82597.1\|3349746_3350640_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	2.5e-69	67.2
SPD82598.1\|3350722_3351583_+	hypothetical protein	NA	NA	NA	NA
SPD82599.1\|3351848_3352244_+	hypothetical protein	NA	NA	NA	NA
SPD82600.1\|3352285_3352597_-	hypothetical protein	A0A2D1GND3	Pseudomonas_phage	1.8e-30	67.0
SPD82601.1\|3352689_3352932_-	hypothetical protein	NA	NA	NA	NA
SPD82602.1\|3352988_3353390_+	LuxR family transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	4.1e-19	61.7
3353261:3353277	attL	NA	NA	NA	NA
SPD82603.1\|3353854_3354193_+	hypothetical protein	NA	NA	NA	NA
SPD82604.1\|3354192_3354780_+	hypothetical protein	NA	NA	NA	NA
SPD82605.1\|3354776_3355046_+	hypothetical protein	NA	NA	NA	NA
SPD82606.1\|3355058_3355880_-	toll-Interleukin receptor	K7PLZ9	Enterobacterial_phage	3.2e-63	50.6
SPD82607.1\|3355988_3356753_+	hypothetical protein	B5WZW7	Pseudomonas_phage	2.1e-40	63.6
SPD82608.1\|3356824_3357148_+	hypothetical protein	NA	NA	NA	NA
SPD82609.1\|3357125_3358007_-	hypothetical protein	NA	NA	NA	NA
SPD82610.1\|3358229_3358745_+	hypothetical protein	A0A1P8VV89	Erythrobacter_phage	3.9e-22	47.3
SPD82611.1\|3358654_3358951_-	hypothetical protein	NA	NA	NA	NA
SPD82612.1\|3359055_3359637_+	hypothetical protein	NA	NA	NA	NA
SPD82613.1\|3360095_3360878_+	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	1.2e-14	30.1
SPD82614.1\|3360945_3361527_+	hypothetical protein	I6NP82	Burkholderia_phage	2.2e-18	36.5
SPD82615.1\|3361523_3361652_+	hypothetical protein	NA	NA	NA	NA
SPD82616.1\|3362379_3362697_+	putative prophage PSSB64-02, Orf61	A0A059VA44	Pseudomonas_phage	7.5e-53	86.1
SPD82617.1\|3363171_3363378_+	hypothetical protein	NA	NA	NA	NA
SPD82618.1\|3363414_3363657_+	hypothetical protein	A0A2H4JF29	uncultured_Caudovirales_phage	2.8e-07	38.8
SPD82619.1\|3363658_3364708_+\|integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	2.0e-102	56.3
3378273:3378289	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3707282 : 3717245

Bacillus_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD82912.1\|3707282_3708632_-\|protease	Alkaline protease secretion protein AprF	NA	NA	NA	NA
SPD82913.1\|3708633_3709971_-\|protease	Alkaline protease secretion protein AprE	NA	NA	NA	NA
SPD82914.1\|3709967_3711764_-\|protease	Alkaline protease secretion ATP-binding protein AprD	W8CYL7	Bacillus_phage	1.3e-24	28.8
SPD82915.1\|3711845_3712157_-	Alkaline proteinase inhibitor	NA	NA	NA	NA
SPD82916.1\|3712285_3713059_-	Serralysin	NA	NA	NA	NA
SPD82917.1\|3713221_3713716_-	serine 3-dehydrogenase	NA	NA	NA	NA
SPD82918.1\|3714202_3714874_-	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	8.7e-107	92.8
SPD82919.1\|3715866_3716214_+\|transposase	transposase	S5VXZ8	Leptospira_phage	8.9e-15	39.0
SPD82920.1\|3716601_3716988_+\|transposase	transposase IS66	NA	NA	NA	NA
SPD82921.1\|3716963_3717245_+\|transposase	transposase IS66	A0A218MNE7	uncultured_virus	6.8e-13	49.3

DBSCAN-SWA_7

3726559 : 3734315

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD82935.1\|3726559_3727861_-	Citrate-proton symporter	Q6JIH2	Burkholderia_virus	2.8e-61	35.8
SPD82936.1\|3727969_3728488_+	tusD-like sulfurtransferase	A0A2H4JA39	uncultured_Caudovirales_phage	1.7e-57	80.1
SPD82937.1\|3728489_3728852_+	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.1e-35	60.8
SPD82938.1\|3728851_3729151_+	hypothetical protein	A0A2H4JG28	uncultured_Caudovirales_phage	2.9e-30	62.6
SPD82939.1\|3729147_3729483_+	DsrC family protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.4e-43	77.5
SPD82940.1\|3729479_3730481_+	hypothetical protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.6e-163	83.2
SPD82941.1\|3730589_3731588_+	Glutathionyl-hydroquinone reductase YqjG	NA	NA	NA	NA
SPD82942.1\|3731639_3733034_-	Siroheme synthase	NA	NA	NA	NA
SPD82943.1\|3733034_3734315_-\|tRNA	Serine-tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	53.9

DBSCAN-SWA_8

4195398 : 4207306

Salmonella_phage(60.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD83361.1\|4195398_4195734_+\|transposase	transposase	NA	NA	NA	NA
SPD83362.1\|4195830_4196847_+\|transposase	transposase component	A0A218MNE7	uncultured_virus	1.3e-66	47.2
SPD83363.1\|4197312_4197600_+\|transposase	transposase	U5P4I9	Shigella_phage	8.4e-11	49.3
SPD83364.1\|4197485_4199681_-	type III effector	NA	NA	NA	NA
SPD83365.1\|4199850_4199970_+	hypothetical protein	NA	NA	NA	NA
SPD83366.1\|4200516_4201551_-\|transposase	putative family 20 transposase	NA	NA	NA	NA
SPD83367.1\|4201661_4203317_-	Transposase for transposon Tn501	A0A1B0V7H9	Salmonella_phage	1.2e-298	91.1
SPD83368.1\|4203313_4204075_-	Transposase for transposon Tn501	A0A1B0V7H9	Salmonella_phage	2.0e-107	80.2
SPD83369.1\|4204337_4204616_-\|transposase	transposase	A0A1B0V7H9	Salmonella_phage	7.1e-39	87.0
SPD83370.1\|4205065_4205668_-	virulence surface antigen protein	NA	NA	NA	NA
SPD83371.1\|4206271_4207306_+\|transposase	putative family 20 transposase	NA	NA	NA	NA

DBSCAN-SWA_9

5317806 : 5324525

Shigella_phage(75.0%)

integrase,transposase

attL 5310147:5310160|attR 5326366:5326379

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5310147:5310160	attL	NA	NA	NA	NA
SPD84388.1\|5317806_5318085_+\|transposase	transposase	U5P4I9	Shigella_phage	9.0e-18	58.8
SPD84389.1\|5318075_5318567_+\|transposase	transposase	U5P429	Shigella_phage	6.9e-37	59.2
SPD84390.1\|5318563_5318956_+\|transposase	ISPsy26, transposase orfB	U5P429	Shigella_phage	1.6e-44	63.8
SPD84391.1\|5318973_5319471_+\|transposase	transposase, IS4	A0A0N9SJT9	Paenibacillus_phage	1.1e-13	36.1
SPD84392.1\|5319618_5321874_-	peptidase	NA	NA	NA	NA
SPD84393.1\|5322055_5322238_+	hypothetical protein	NA	NA	NA	NA
SPD84394.1\|5322319_5323720_-\|integrase	integrase	NA	NA	NA	NA
SPD84395.1\|5323712_5324525_-\|integrase	integrase	NA	NA	NA	NA
5326366:5326379	attR	NA	NA	NA	NA

DBSCAN-SWA_10

5371368 : 5404910

Pseudomonas_phage(57.69%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPD84445.1\|5371368_5372580_-\|tRNA	Tyrosine-tRNA ligase	NA	NA	NA	NA
SPD84446.1\|5372781_5374200_+	peptidase M23	A8ATH6	Listeria_phage	4.2e-18	44.7
SPD84447.1\|5374203_5375298_+	Anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
SPD84448.1\|5375360_5375711_-	Iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	7.4e-25	50.5
SPD84449.1\|5375810_5376845_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
SPD84450.1\|5376978_5377407_+	membrane protein	NA	NA	NA	NA
SPD84451.1\|5377515_5378421_+	hypothetical protein	NA	NA	NA	NA
SPD84452.1\|5378487_5379264_+	short-chain dehydrogenase	NA	NA	NA	NA
SPD84453.1\|5379367_5379706_+	HIT family hydrolase	NA	NA	NA	NA
SPD84454.1\|5379828_5380476_+	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
SPD84455.1\|5380552_5381347_-	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA
SPD84456.1\|5381589_5382012_-	peroxiredoxin	NA	NA	NA	NA
SPD84457.1\|5382222_5382867_+	Cyclic AMP receptor-like protein	NA	NA	NA	NA
SPD84458.1\|5382878_5383574_-	hypothetical protein	NA	NA	NA	NA
SPD84459.1\|5383603_5384440_-	Indole-3-glycerol phosphate synthase	A0A0P0IR83	Acinetobacter_phage	2.3e-69	56.2
SPD84460.1\|5384436_5385498_-	Anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	4.1e-111	58.0
SPD84461.1\|5385507_5386107_-	Anthranilate synthase component 2	A0A0P0IKJ1	Acinetobacter_phage	2.5e-73	64.7
SPD84462.1\|5386269_5386521_-	hypothetical protein	NA	NA	NA	NA
SPD84463.1\|5386520_5387030_-	hypothetical protein	B5TK84	Pseudomonas_phage	9.7e-26	46.6
SPD84464.1\|5387026_5387572_-	prophage PSPPH01, chitinase family protein	A0A2H4JHX4	uncultured_Caudovirales_phage	2.0e-69	72.8
SPD84465.1\|5387684_5388296_-\|tail	tail fiber assembly domain-containing protein	NA	NA	NA	NA
SPD84466.1\|5388240_5390115_-\|tail	Mu-like prophage, tail fiber protein H	A0A077K818	Ralstonia_phage	1.3e-38	53.7
SPD84467.1\|5390125_5390725_-\|tail	phage tail protein	B5TK76	Pseudomonas_phage	7.5e-86	72.4
SPD84468.1\|5390712_5391753_-\|plate	baseplate J protein	B5TK75	Pseudomonas_phage	7.1e-132	70.1
SPD84469.1\|5391742_5392141_-	hypothetical protein	B5TK74	Pseudomonas_phage	1.5e-42	63.6
SPD84470.1\|5392137_5392650_-	phage assembly protein	B5TK73	Pseudomonas_phage	2.4e-64	73.2
SPD84471.1\|5392646_5393774_-	hypothetical protein	B5TK72	Pseudomonas_phage	2.1e-113	60.5
SPD84472.1\|5393777_5395118_-	2-hydroxyacid dehydrogenase	B5TK71	Pseudomonas_phage	9.5e-113	47.7
SPD84473.1\|5395114_5397259_-\|tail	tail tape measure protein	U5P420	Shigella_phage	1.0e-76	39.1
SPD84474.1\|5397389_5397686_-	ArsR family transcriptional regulator	B5TK69	Pseudomonas_phage	4.3e-34	77.4
SPD84475.1\|5397682_5398030_-\|tail	phage tail protein	B5TK68	Pseudomonas_phage	8.6e-42	70.4
SPD84476.1\|5398090_5399587_-\|tail	Prophage PSSSM-04, tail sheath protein L	B5TK67	Pseudomonas_phage	1.9e-234	80.1
SPD84477.1\|5399605_5399794_-	hypothetical protein	B5TK66	Pseudomonas_phage	7.7e-13	61.0
SPD84478.1\|5399790_5400381_-	hypothetical protein	B5TK65	Pseudomonas_phage	3.7e-53	52.6
SPD84479.1\|5400426_5400765_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	9.0e-20	59.2
SPD84480.1\|5400745_5401135_-	chemotaxis protein	A0A059VK40	Pseudomonas_phage	2.3e-43	76.4
SPD84481.1\|5401257_5402430_-	glycoside hydrolase	NA	NA	NA	NA
SPD84482.1\|5402432_5402627_-	hypothetical protein	B5TK59	Pseudomonas_phage	2.7e-13	92.1
SPD84483.1\|5402899_5403343_-	hypothetical protein	A0A2H4J8A5	uncultured_Caudovirales_phage	3.5e-24	45.8
SPD84484.1\|5403496_5404144_+	repressor	A0A0M4QWY1	Salmonella_phage	3.8e-51	47.6
SPD84485.1\|5404297_5404546_+	hypothetical protein	NA	NA	NA	NA
SPD84486.1\|5404643_5404910_+	transcriptional regulator	A0A2H4J8B4	uncultured_Caudovirales_phage	1.6e-16	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LT985194

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. LT985192

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection