CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT991956	Enterobacter hormaechei subsp. steigerwaltii isolate C309 genome assembly, plasmid: pC309-p2	1 crisprs	NA	0	1	0	0
LT991955	Enterobacter hormaechei subsp. steigerwaltii isolate C309 genome assembly, plasmid: pC309-VIM4	0 crisprs	NA	0	0	0	0
LT991954	Enterobacter hormaechei subsp. steigerwaltii isolate C309 genome assembly, chromosome: C309	1 crisprs	NA	0	5	0	0

1. LT991956

CRISPR-Cas detection and classification

Crispr_ID: LT991956_1

• CRISPR_ID: LT991956_1
• CRISPR_location: 52439-52573
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LT991956_1

Consensus_repeat	Method
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CRISPRCasFinder

spacers of LT991956_1

>1.1|52487|39|LT991956|CRISPRCasFinder
CTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGCC

CRISPR arrays and Neighbor proteins around LT991956_1

CRISPR arrays

The CRISPR arrays of LT991956_1

>merge|LT991956|1|52439-52573|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCACCTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGCCTGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

>LT991956|1|1|52439-52573|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGCC
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

Protein sequences

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP035636	Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence	100226-100264	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1315-1353	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1402-1440	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP031569	Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence	7815-7853	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP050011	Citrobacter sp. Y3 plasmid unnamed2, complete sequence	27572-27610	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP019840	Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence	70340-70378	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP022149	Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence	50338-50376	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	14593-14631	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP008907	Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence	83191-83229	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP026851	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1	65584-65622	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_LT991956	Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2	52487-52525	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP029719	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence	1341-1379	0	1.0
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP012428	Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence	20127-20165	1	0.974
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NC_014107	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	48095-48133	1	0.974
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP046273	Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence	40032-40070	1	0.974
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP012169	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence	40032-40070	1	0.974
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP042541	Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence	40032-40070	1	0.974
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP031723	Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence	50311-50349	1	0.974
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP042567	Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence	40032-40070	1	0.974
LT991956_1	1.1|52487|39|LT991956|CRISPRCasFinder	52487-52525	39	NZ_CP039454	Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence	72766-72804	2	0.949

1. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

2. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

3. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

4. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

5. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP050011 (Citrobacter sp. Y3 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

6. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

7. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP022149 (Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

8. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

9. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

10. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

11. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

12. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

13. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP012428 (Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

14. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

15. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

16. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

17. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

18. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

19. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

20. spacer 1.1|52487|39|LT991956|CRISPRCasFinder matches to NZ_CP039454 (Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence) position: , mismatch: 2, identity: 0.949

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtttcagaactcatccgtcaaccccgcc	Protospacer
************* ************* ***********

2. LT991954

CRISPR-Cas detection and classification

Crispr_ID: LT991954_1

• CRISPR_ID: LT991954_1
• CRISPR_location: 2396305-2396517
• CRISPR_type: Orphan
• Repeat_type: I-F
• Spacer_info: 3 spacers

Consensus repeat of LT991954_1

Consensus_repeat	Method
TTCAGTTCACTGCCGGGCAGGCAGCTTAGAAATCT	PILER-CR
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CRT

spacers of LT991954_1

>1.1|2396340|29|LT991954|PILER-CR
AACTGCCAGACTTCCTGGCTTTCTCCCTC
>1.2|2396404|25|LT991954|PILER-CR
GGCGACACCGACACGCGCCAGCGTG
>1.3|2396338|31|LT991954|CRISPRCasFinder,CRT
CTAACTGCCAGACTTCCTGGCTTTCTCCCTC
>1.4|2396398|31|LT991954|CRISPRCasFinder,CRT
ACGGCGACACCGACACGCGCCAGCGTGTTTT
>1.5|2396458|31|LT991954|CRT
CTTGCCTGATTTGCTCATGCCTTTAGTCACG

CRISPR arrays and Neighbor proteins around LT991954_1

CRISPR arrays

The CRISPR arrays of LT991954_1

>merge|LT991954|1|2396305-2396517|PILER-CR,CRISPRCasFinder,CRT
TTCAGTTCACTGCCGGGCAGGCAGCTTAGAAATCTAACTGCCAGACTTCCTGGCTTTCTCCCTCGTTCACTGCCGGGCAGGCAGCTTAGAAATACGGCGACACCGACACGCGCCAGCGTGTTTTGTTCACTGCCGGGCAGGCAGCTTAGAAATCTTGCCTGATTTGCTCATGCCTTTAGTCACGGTTCACTGCCGTACAGGCCGTAGGCACAA

>LT991954|1|1|2396305-2396459|PILER-CR
TTCAGTTCACTGCCGGGCAGGCAGCTTAGAAATCT	AACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAATACGGCG	ACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAATCT

>LT991954|1|1|2396309-2396457|CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CTAACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	ACGGCGACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAAT

>LT991954|1|1|2396309-2396517|CRT
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CTAACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	ACGGCGACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CTTGCCTGATTTGCTCATGCCTTTAGTCACG
GTTCACTGCCGTACAGGCCGTAGGCACAA

Protein sequences

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK972693	Salmonella phage SI23, complete genome	6397-6427	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK770415	Salmonella phage SF11, complete genome	15202-15232	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK972694	Salmonella phage SE22, complete genome	27485-27515	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK770414	Salmonella phage SE16, complete genome	19098-19128	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	NC_013059	Salmonella phage c341, complete genome	37506-37536	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK972686	Salmonella phage SF3, complete genome	38552-38582	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK972685	Salmonella phage SE10, complete genome	39771-39801	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK972687	Salmonella phage SE1 (in:P22virus), complete genome	30045-30075	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	FJ000341	Salmonella phage g341c, complete genome	37506-37536	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	EU570103	Salmonella phage epsilon34, complete genome	39547-39577	2	0.935
LT991954_1	1.5|2396458|31|LT991954|CRT	2396458-2396488	31	MK972692	Salmonella phage SE21, complete genome	26621-26651	2	0.935
LT991954_1	1.2|2396404|25|LT991954|PILER-CR	2396404-2396428	25	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714190-714214	4	0.84
LT991954_1	1.2|2396404|25|LT991954|PILER-CR	2396404-2396428	25	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62536-62560	4	0.84
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	JF974302	Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces	21037-21067	6	0.806
LT991954_1	1.1|2396340|29|LT991954|PILER-CR	2396340-2396368	29	NC_023006	Pseudomonas phage PPpW-3 DNA, complete sequence	36335-36363	7	0.759
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592513	Vibrio phage 1.142.O._10N.261.49.E11, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592412	Vibrio phage 1.028.O._10N.286.45.B6, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592527	Vibrio phage 1.159.O._10N.261.46.F12, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592588	Vibrio phage 1.217.O._10N.261.45.A1, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592589	Vibrio phage 1.219.O._10N.261.45.E2, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592524	Vibrio phage 1.156.O._10N.261.45.A6, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592669	Vibrio phage 2.159.A._10N.261.46.F12, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592670	Vibrio phage 2.159.B._10N.261.46.F12, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	MG592507	Vibrio phage 1.136.O._10N.261.45.E11, partial genome	26631-26661	7	0.774
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1534665-1534695	7	0.774
LT991954_1	1.3|2396338|31|LT991954|CRISPRCasFinder,CRT	2396338-2396368	31	NC_023006	Pseudomonas phage PPpW-3 DNA, complete sequence	36335-36365	8	0.742
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62534-62564	8	0.742
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	283146-283176	8	0.742
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	22328-22358	9	0.71
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	475099-475129	9	0.71
LT991954_1	1.4|2396398|31|LT991954|CRISPRCasFinder,CRT	2396398-2396428	31	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714186-714216	10	0.677

1. spacer 1.5|2396458|31|LT991954|CRT matches to MK972693 (Salmonella phage SI23, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

2. spacer 1.5|2396458|31|LT991954|CRT matches to MK770415 (Salmonella phage SF11, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

3. spacer 1.5|2396458|31|LT991954|CRT matches to MK972694 (Salmonella phage SE22, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

4. spacer 1.5|2396458|31|LT991954|CRT matches to MK770414 (Salmonella phage SE16, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

5. spacer 1.5|2396458|31|LT991954|CRT matches to NC_013059 (Salmonella phage c341, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

6. spacer 1.5|2396458|31|LT991954|CRT matches to MK972686 (Salmonella phage SF3, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

7. spacer 1.5|2396458|31|LT991954|CRT matches to MK972685 (Salmonella phage SE10, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

8. spacer 1.5|2396458|31|LT991954|CRT matches to MK972687 (Salmonella phage SE1 (in:P22virus), complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

9. spacer 1.5|2396458|31|LT991954|CRT matches to FJ000341 (Salmonella phage g341c, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

10. spacer 1.5|2396458|31|LT991954|CRT matches to EU570103 (Salmonella phage epsilon34, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

11. spacer 1.5|2396458|31|LT991954|CRT matches to MK972692 (Salmonella phage SE21, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

12. spacer 1.2|2396404|25|LT991954|PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgacaccgacacgcgccagcgtg	CRISPR spacer
ggcgactccgacccgcgccagcgcc	Protospacer
****** ***** **********. 

13. spacer 1.2|2396404|25|LT991954|PILER-CR matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgacaccgacacgcgccagcgtg	CRISPR spacer
ggcgacaccgacactcgcccgcgat	Protospacer
************** **** ***  

14. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 6, identity: 0.806

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcattgt	Protospacer
**********.** ********* *..** *

15. spacer 1.1|2396340|29|LT991954|PILER-CR matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 7, identity: 0.759

aactgccagacttcctggctttctccctc	CRISPR spacer
tgctgcccgacttcctggccttctcgccg	Protospacer
 .***** ***********.***** *. 

16. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

17. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

18. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

19. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

20. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

21. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

22. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

23. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

24. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

25. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccag----cgtgtttt	CRISPR spacer
acggcgagaccgtcacgcgccaggtgccggg----	Protospacer
******* **** **********    ** *    

26. spacer 1.3|2396338|31|LT991954|CRISPRCasFinder,CRT matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 8, identity: 0.742

ctaactgccagacttcctggctttctccctc	CRISPR spacer
tttgctgcccgacttcctggccttctcgccg	Protospacer
.* .***** ***********.***** *. 

27. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.742

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
gcggcgacaccgacactcgcccgcgatctca	Protospacer
.*************** **** ***  .*. 

28. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 8, identity: 0.742

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
tcggcgatgccgacacgcgccagcagttcta	Protospacer
 ******..***************.  *.* 

29. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.71

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ccggcgacatcgacacgcggcagcccaggat	Protospacer
 ********.********* **** ..   *

30. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.71

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ccggcgacaccgacacccggcagcccaggat	Protospacer
 *************** ** **** ..   *

31. spacer 1.4|2396398|31|LT991954|CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.677

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ggggcgactccgacccgcgccagcgccgcag	Protospacer
. ****** ***** **********.  .