CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT996891	Staphylococcus aureus isolate 24117-WT genome assembly, chromosome: I	6 crisprs	NA	5	2	0	0

Cas Category Instructions

Results visualization

1. LT996891

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CRISPR-Cas detection and classification

Crispr_ID: LT996891_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT996891_1

531619-531697

Orphan

Consensus_repeat	Method
CCAGCCTCTGTGTTGGGGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT996891_1

>merge|LT996891|1|531619-531697|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCGCCAACTTGCACACTATTGTAAGCTGACTTTCCACCAGCCTCTGTGTTGGGGCCCCG

>LT996891|1|1|531619-531697|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCG	CCAACTTGCACACTATTGTAAGCTGACTTTCCA
CCAGCCTCTGTGTTGGGGCCCCG

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Crispr_ID: LT996891_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT996891_2

618068-618258

Orphan

Consensus_repeat	Method
GGGGCCCCAACACAGAAGCTG	CRT

3 spacers

The CRISPR arrays of LT996891_2

>merge|LT996891|2|618068-618258|CRT
GGGGCCCCAACACAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGGGTGGGCCCCAACACAGAGAATTTCGAAATGAAATTCTACAGGCAATGCAAGTTGGGGTGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTG

>LT996891|2|1|618068-618258|CRT
GGGGCCCCAACACAGAAGCTG	GCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGGG
TGGGCCCCAACACAGAGAATT	TCGAAATGAAATTCTACAGGCAATGCAAGTTGGGGT
GGGGCCCCAACATAGAAGCTG	GCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGC
GGGGCCCCAACACAGAAGCTG

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Crispr_ID: LT996891_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT996891_3

630875-630955

Orphan

Consensus_repeat	Method
AGTTGGCGGGGCCCCAACATAAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT996891_3

>merge|LT996891|3|630875-630955|CRISPRCasFinder
AGTTGGCGGGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAA

>LT996891|3|2|630875-630955|CRISPRCasFinder
AGTTGGCGGGGCCCCAACATAAAGAA	TTTCGAAAAGAAATTCTACAAACAATGCA
AGTTGGCGGGGCCCCAACATAAAGAA

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Crispr_ID: LT996891_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT996891_4

1731053-1731150

Orphan

Consensus_repeat	Method
GCCTTTCTAGCTCATAAAATTCGCAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT996891_4

>merge|LT996891|4|1731053-1731150|CRISPRCasFinder
GCCTTTCTAGCTCATAAAATTCGCAGAAAATAAAGGAACGCATTAGTTAGCTTCGCTACTAATGCATAAGCCTTTCTAGCTCATAAAATTCGCAGAAA

>LT996891|4|3|1731053-1731150|CRISPRCasFinder
GCCTTTCTAGCTCATAAAATTCGCAGAAA	ATAAAGGAACGCATTAGTTAGCTTCGCTACTAATGCATAA
GCCTTTCTAGCTCATAAAATTCGCAGAAA

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Crispr_ID: LT996891_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT996891_5

2395376-2395457

Orphan

Consensus_repeat	Method
TGTTGGGCCCCACCCCAACTTGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT996891_5

>merge|LT996891|5|2395376-2395457|CRISPRCasFinder
TGTTGGGCCCCACCCCAACTTGCATGGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTTGCAT

>LT996891|5|4|2395376-2395457|CRISPRCasFinder
TGTTGGGCCCCACCCCAACTTGCAT	GGTCTGTAGAATTTCTTTTCGAAATTCTCTGT
GTTGGGGCCCCACCCCAACTTGCAT

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Crispr_ID: LT996891_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT996891_6

2481510-2481595

Orphan

Consensus_repeat	Method
AAGTTGGGGACGGGGCCCCAACACAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT996891_6

>merge|LT996891|6|2481510-2481595|CRISPRCasFinder
AAGTTGGGGACGGGGCCCCAACACAGAAGCTGACCAAAAGTCAGCTTTCAATAATGTGCAAGTTGGGGATGGGGCCCCAACACAGA

>LT996891|6|5|2481510-2481595|CRISPRCasFinder
AAGTTGGGGACGGGGCCCCAACACAGA	AGCTGACCAAAAGTCAGCTTTCAATAATGTGC
AAGTTGGGGATGGGGCCCCAACACAGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT996891_2	2.1\|618089\|36\|LT996891\|CRT	618089-618124	36	LT996891.1	222939-222974	0	1.0
LT996891_2	2.1\|618089\|36\|LT996891\|CRT	618089-618124	36	LT996891.1	580298-580333	0	1.0
LT996891_2	2.1\|618089\|36\|LT996891\|CRT	618089-618124	36	LT996891.1	1271734-1271769	0	1.0
LT996891_2	2.3\|618203\|35\|LT996891\|CRT	618203-618237	35	LT996891.1	580242-580276	0	1.0
LT996891_2	2.3\|618203\|35\|LT996891\|CRT	618203-618237	35	LT996891.1	1443319-1443353	0	1.0
LT996891_2	2.3\|618203\|35\|LT996891\|CRT	618203-618237	35	LT996891.1	1715695-1715729	0	1.0
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	311303-311331	0	1.0
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1443373-1443401	0	1.0
LT996891_2	2.1\|618089\|36\|LT996891\|CRT	618089-618124	36	LT996891.1	531584-531619	1	0.972
LT996891_2	2.1\|618089\|36\|LT996891\|CRT	618089-618124	36	LT996891.1	662367-662402	1	0.972
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	1271905-1271940	1	0.972
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	1690301-1690336	1	0.972
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	1690359-1690394	1	0.972
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1070044-1070072	1	0.966
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1070099-1070127	1	0.966
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1152507-1152535	1	0.966
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	2337930-2337958	1	0.966
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	2393122-2393150	1	0.966
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	2514163-2514191	1	0.966
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	10960-10995	2	0.944
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	98652-98687	2	0.944
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	381891-381926	2	0.944
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	625410-625445	2	0.944
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	2179714-2179749	2	0.944
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	2189122-2189157	2	0.944
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	2393113-2393148	2	0.944
LT996891_2	2.2\|618146\|36\|LT996891\|CRT	618146-618181	36	LT996891.1	2514165-2514200	2	0.944
LT996891_2	2.3\|618203\|35\|LT996891\|CRT	618203-618237	35	LT996891.1	311012-311046	2	0.943
LT996891_2	2.3\|618203\|35\|LT996891\|CRT	618203-618237	35	LT996891.1	2232084-2232118	2	0.943
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	223061-223089	2	0.931
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	408698-408726	2	0.931
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1271856-1271884	2	0.931
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1271914-1271942	2	0.931
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1690310-1690338	2	0.931
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1690368-1690396	2	0.931
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	1881359-1881387	2	0.931
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	LT996891.1	2179712-2179740	2	0.931
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	11013-11044	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	98603-98634	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	223120-223151	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	307108-307139	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	408521-408552	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	408637-408668	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	1070213-1070244	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	1167669-1167700	2	0.938
LT996891_6	6.1\|2481537\|32\|LT996891\|CRISPRCasFinder	2481537-2481568	32	LT996891.1	2337816-2337847	2	0.938

1. spacer 2.1|618089|36|LT996891|CRT matches to position: 222939-222974, mismatch: 0, identity: 1.0

gcggaaagtcagcttacaataatgtgcaagttgggg	CRISPR spacer
gcggaaagtcagcttacaataatgtgcaagttgggg	Protospacer
************************************

2. spacer 2.1|618089|36|LT996891|CRT matches to position: 580298-580333, mismatch: 0, identity: 1.0

gcggaaagtcagcttacaataatgtgcaagttgggg	CRISPR spacer
gcggaaagtcagcttacaataatgtgcaagttgggg	Protospacer
************************************

3. spacer 2.1|618089|36|LT996891|CRT matches to position: 1271734-1271769, mismatch: 0, identity: 1.0

gcggaaagtcagcttacaataatgtgcaagttgggg	CRISPR spacer
gcggaaagtcagcttacaataatgtgcaagttgggg	Protospacer
************************************

4. spacer 2.3|618203|35|LT996891|CRT matches to position: 580242-580276, mismatch: 0, identity: 1.0

gcggaaagtcagcttacaataatgtgcaagttggc	CRISPR spacer
gcggaaagtcagcttacaataatgtgcaagttggc	Protospacer
***********************************

5. spacer 2.3|618203|35|LT996891|CRT matches to position: 1443319-1443353, mismatch: 0, identity: 1.0

gcggaaagtcagcttacaataatgtgcaagttggc	CRISPR spacer
gcggaaagtcagcttacaataatgtgcaagttggc	Protospacer
***********************************

6. spacer 2.3|618203|35|LT996891|CRT matches to position: 1715695-1715729, mismatch: 0, identity: 1.0

gcggaaagtcagcttacaataatgtgcaagttggc	CRISPR spacer
gcggaaagtcagcttacaataatgtgcaagttggc	Protospacer
***********************************

7. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 311303-311331, mismatch: 0, identity: 1.0

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaaacaatgca	Protospacer
*****************************

8. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1443373-1443401, mismatch: 0, identity: 1.0

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaaacaatgca	Protospacer
*****************************

9. spacer 2.1|618089|36|LT996891|CRT matches to position: 531584-531619, mismatch: 1, identity: 0.972

gcggaaagtcagcttacaataatgtgcaagttgggg	CRISPR spacer
gcggaaagtcagcttacaatagtgtgcaagttgggg	Protospacer
*********************.**************

10. spacer 2.1|618089|36|LT996891|CRT matches to position: 662367-662402, mismatch: 1, identity: 0.972

gcggaaagtcagcttacaataatgtgcaagttgggg	CRISPR spacer
gcggaaagtcagctaacaataatgtgcaagttgggg	Protospacer
************** *********************

11. spacer 2.2|618146|36|LT996891|CRT matches to position: 1271905-1271940, mismatch: 1, identity: 0.972

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcaagttggggt	Protospacer
****** *****************************

12. spacer 2.2|618146|36|LT996891|CRT matches to position: 1690301-1690336, mismatch: 1, identity: 0.972

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcaagttggggt	Protospacer
****** *****************************

13. spacer 2.2|618146|36|LT996891|CRT matches to position: 1690359-1690394, mismatch: 1, identity: 0.972

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcaagttggggt	Protospacer
****** *****************************

14. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1070044-1070072, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

15. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1070099-1070127, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

16. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1152507-1152535, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacagacaatgca	Protospacer
********************.********

17. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 2337930-2337958, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacagacaatgca	Protospacer
********************.********

18. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 2393122-2393150, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacagacaatgca	Protospacer
********************.********

19. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 2514163-2514191, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacagacaatgca	Protospacer
********************.********

20. spacer 2.2|618146|36|LT996891|CRT matches to position: 10960-10995, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcgagttggggt	Protospacer
****** *******************.*********

21. spacer 2.2|618146|36|LT996891|CRT matches to position: 98652-98687, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcgagttggggt	Protospacer
****** *******************.*********

22. spacer 2.2|618146|36|LT996891|CRT matches to position: 381891-381926, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcgagttggggt	Protospacer
****** *******************.*********

23. spacer 2.2|618146|36|LT996891|CRT matches to position: 625410-625445, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcgagttggggt	Protospacer
****** *******************.*********

24. spacer 2.2|618146|36|LT996891|CRT matches to position: 2179714-2179749, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaggaaattctacagacaatgcaagttggggt	Protospacer
****** ************.****************

25. spacer 2.2|618146|36|LT996891|CRT matches to position: 2189122-2189157, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacaggcaatgcgagttggggt	Protospacer
****** *******************.*********

26. spacer 2.2|618146|36|LT996891|CRT matches to position: 2393113-2393148, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacagacaatgcaagttggggt	Protospacer
****** ************.****************

27. spacer 2.2|618146|36|LT996891|CRT matches to position: 2514165-2514200, mismatch: 2, identity: 0.944

tcgaaatgaaattctacaggcaatgcaagttggggt	CRISPR spacer
tcgaaaagaaattctacagacaatgcaagttggggt	Protospacer
****** ************.****************

28. spacer 2.3|618203|35|LT996891|CRT matches to position: 311012-311046, mismatch: 2, identity: 0.943

gcggaaagtcagcttacaataatgtgcaagttggc	CRISPR spacer
gcgaaaagtcagcttacaaaaatgtgcaagttggc	Protospacer
***.*************** ***************

29. spacer 2.3|618203|35|LT996891|CRT matches to position: 2232084-2232118, mismatch: 2, identity: 0.943

gcggaaagtcagcttacaataatgtgcaagttggc	CRISPR spacer
gcggaaagtcagcatacaataacgtgcaagttggc	Protospacer
************* ********.************

30. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 223061-223089, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

31. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 408698-408726, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

32. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1271856-1271884, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

33. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1271914-1271942, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

34. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1690310-1690338, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

35. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1690368-1690396, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

36. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 1881359-1881387, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcaaaaagaaattctacagacaatgca	Protospacer
****.***************.********

37. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to position: 2179712-2179740, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaggaaattctacagacaatgca	Protospacer
********.***********.********

38. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 11013-11044, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

39. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 98603-98634, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

40. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 223120-223151, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

41. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 307108-307139, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

42. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 408521-408552, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

43. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 408637-408668, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

44. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 1070213-1070244, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

45. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 1167669-1167700, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgc	Protospacer
******* ************ ***********

46. spacer 6.1|2481537|32|LT996891|CRISPRCasFinder matches to position: 2337816-2337847, mismatch: 2, identity: 0.938

agctgaccaaaagtcagctttcaataatgtgc	CRISPR spacer
agctggccaatagtcagctttcaataatgtgc	Protospacer
*****.**** *********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT996891_3	3.1\|630901\|29\|LT996891\|CRISPRCasFinder	630901-630929	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
LT996891_5	5.1\|2395401\|32\|LT996891\|CRISPRCasFinder	2395401-2395432	32	KM359505	Prochlorococcus phage P-TIM68, complete genome	102705-102736	8	0.75

1. spacer 3.1|630901|29|LT996891|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
cacttagaagaaatcctacaaacaatgca	Protospacer
. .. *.*******.**************

2. spacer 5.1|2395401|32|LT996891|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 8, identity: 0.75

ggtctgtagaatttcttttcgaaattctctgt	CRISPR spacer
gatctgtataatttcttttggaaatagttaat	Protospacer
*.****** ********** *****  *. .*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage