CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS399318	Klebsiella pneumoniae isolate CNR48 genome assembly, chromosome: CNR48	1 crisprs	csa3,cas3,DinG,WYL,DEDDh,RT	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS399318_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS399318_1

1632146-1632240

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS399318_1

>merge|LS399318|1|1632146-1632240|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>LS399318|1|1|1632146-1632240|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
LS399318.1\|SPR85914.1\|1635924_1638147_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	unknown	unknown	gnl\|CDD\|235158
LS399318.1\|SPR85919.1\|1641685_1642534_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	unknown	unknown	gnl\|CDD\|273208
LS399318.1\|SPR85908.1\|1629239_1629899_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LS399318.1\|SPR85907.1\|1626383_1629227_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
LS399318.1\|SPR85917.1\|1640479_1641301_+\|SSU-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-##-SSU-rRNA-m6,m6-A1518-1519	unknown	unknown	gnl\|CDD\|234708
LS399318.1\|SPR85903.1\|1619544_1621254_+\|Ribulokinase	unknown	unknown	gnl\|CDD\|235221
LS399318.1\|SPR85910.1\|1630692_1632084_-\|Malate-Na(+)-symporter	unknown	unknown	gnl\|CDD\|377030
LS399318.1\|SPR85905.1\|1622904_1623600_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
LS399318.1\|SPR85912.1\|1633996_1634695_+\|Transcriptional-regulatory-protein-CitB,-DpiA	unknown	unknown	gnl\|CDD\|226931
LS399318.1\|SPR85906.1\|1623775_1626133_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LS399318.1\|SPR85918.1\|1641303_1641681_+\|ApaG-protein	unknown	unknown	gnl\|CDD\|180098
LS399318.1\|SPR85909.1\|1629973_1630513_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
LS399318.1\|SPR85913.1\|1634727_1635555_-\|DnaJ-like-protein-DjlA	unknown	unknown	gnl\|CDD\|236512
LS399318.1\|SPR85920.1\|1643127_1643607_-\|Dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
LS399318.1\|SPR85902.1\|1619192_1619363_+\|FIG00732864:-hypothetical-protein	unknown	unknown	unknown
LS399318.1\|SPR85915.1\|1638201_1639488_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	unknown	unknown	gnl\|CDD\|236758
LS399318.1\|SPR85911.1\|1632381_1634007_+\|Sensor-kinase-CitA,-DpiB	unknown	unknown	gnl\|CDD\|225827
LS399318.1\|SPR85916.1\|1639493_1640483_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234696
LS399318.1\|SPR85904.1\|1621264_1622767_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
LS399318.1\|SPR85901.1\|1618361_1619207_-\|Arabinose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|236717

Protein	Function_ID	Function_description	E-value
LS399318.1\|SPR85914.1\|1635924_1638147_+\|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
LS399318.1\|SPR85919.1\|1641685_1642534_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
LS399318.1\|SPR85908.1\|1629239_1629899_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
LS399318.1\|SPR85907.1\|1626383_1629227_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LS399318.1\|SPR85917.1\|1640479_1641301_+\|SSU-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-##-SSU-rRNA-m6,m6-A1518-1519	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
LS399318.1\|SPR85903.1\|1619544_1621254_+\|Ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
LS399318.1\|SPR85910.1\|1630692_1632084_-\|Malate-Na(+)-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	1.7266e-170
LS399318.1\|SPR85905.1\|1622904_1623600_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
LS399318.1\|SPR85906.1\|1623775_1626133_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
LS399318.1\|SPR85918.1\|1641303_1641681_+\|ApaG-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
LS399318.1\|SPR85909.1\|1629973_1630513_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
LS399318.1\|SPR85913.1\|1634727_1635555_-\|DnaJ-like-protein-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
LS399318.1\|SPR85920.1\|1643127_1643607_-\|Dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
LS399318.1\|SPR85912.1\|1633996_1634695_+\|Transcriptional-regulatory-protein-CitB,-DpiA	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
LS399318.1\|SPR85915.1\|1638201_1639488_+\|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
LS399318.1\|SPR85911.1\|1632381_1634007_+\|Sensor-kinase-CitA,-DpiB	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
LS399318.1\|SPR85916.1\|1639493_1640483_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
LS399318.1\|SPR85904.1\|1621264_1622767_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
LS399318.1\|SPR85901.1\|1618361_1619207_-\|Arabinose-operon-regulatory-protein	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0

>LS399318.1|SPR85910.1|1630692_1632084_-|Malate-Na(+)-symporter
MNNNDRAEFMSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>LS399318.1|SPR85909.1|1629973_1630513_-|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>LS399318.1|SPR85908.1|1629239_1629899_+|Ribosomal-large-subunit-pseudouridine-synthase-A
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>LS399318.1|SPR85907.1|1626383_1629227_+|RNA-polymerase-associated-protein-RapA
MVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>LS399318.1|SPR85906.1|1623775_1626133_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>LS399318.1|SPR85905.1|1622904_1623600_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>LS399318.1|SPR85904.1|1621264_1622767_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>LS399318.1|SPR85903.1|1619544_1621254_+|Ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILLVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>LS399318.1|SPR85902.1|1619192_1619363_+|FIG00732864:-hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPVACIPP
>LS399318.1|SPR85901.1|1618361_1619207_-|Arabinose-operon-regulatory-protein
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>LS399318.1|SPR85911.1|1632381_1634007_+|Sensor-kinase-CitA,-DpiB
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>LS399318.1|SPR85912.1|1633996_1634695_+|Transcriptional-regulatory-protein-CitB,-DpiA
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>LS399318.1|SPR85913.1|1634727_1635555_-|DnaJ-like-protein-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>LS399318.1|SPR85914.1|1635924_1638147_+|Outer-membrane-protein-Imp,-required-for-envelope-biogenesis-/-Organic-solvent-tolerance-protein-precursor
MEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>LS399318.1|SPR85915.1|1638201_1639488_+|Survival-protein-SurA-precursor-(Peptidyl-prolyl-cis-trans-isomerase-SurA)
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>LS399318.1|SPR85916.1|1639493_1640483_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>LS399318.1|SPR85917.1|1640479_1641301_+|SSU-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-##-SSU-rRNA-m6,m6-A1518-1519
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>LS399318.1|SPR85918.1|1641303_1641681_+|ApaG-protein
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>LS399318.1|SPR85919.1|1641685_1642534_+|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>LS399318.1|SPR85920.1|1643127_1643607_-|Dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

627784 : 637258

Brazilian_cedratvirus(16.67%)

tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPR84975.1\|627784_629506_+	Transport ATP-binding protein CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
SPR84976.1\|629532_630252_+\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
SPR84977.1\|630605_630824_+	Translation initiation factor 1	NA	NA	NA	NA
SPR84978.1\|630824_630944_+	hypothetical protein	NA	NA	NA	NA
SPR84979.1\|630954_633234_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
SPR84980.1\|633264_633582_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
SPR84981.1\|633907_634129_+	Cold shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
SPR84982.1\|634205_636146_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
SPR84983.1\|636142_637258_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_2

1118867 : 1129931

Enterobacteria_phage(28.57%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPR85420.1\|1118867_1119107_-	hypothetical protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
SPR85421.1\|1120022_1122011_-	FIG00644701: hypothetical protein	A0A286S1P0	Klebsiella_phage	7.2e-24	28.5
SPR85422.1\|1122098_1124576_-	FIG00553532: hypothetical protein	F1C5A7	Cronobacter_phage	1.4e-197	45.3
SPR85423.1\|1124562_1124958_-	Phage protein	F1C5F2	Cronobacter_phage	4.7e-36	54.8
SPR85424.1\|1124954_1125425_-	Phage protein	R9TPR6	Aeromonas_phage	1.2e-27	40.4
SPR85425.1\|1125424_1125901_-	Phage protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.0
SPR85426.1\|1126447_1126627_-	hypothetical protein	NA	NA	NA	NA
SPR85427.1\|1126667_1129931_-\|tail	Phage tail length tape-measure protein 1	Q5G8W8	Enterobacteria_phage	6.2e-134	40.7

DBSCAN-SWA_3

1134226 : 1170251

Cronobacter_phage(29.41%)

tRNA,terminase,integrase

attL 1163929:1163942|attR 1168352:1168365

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPR85430.1\|1134226_1134553_-	Phage protein	G0ZNE7	Cronobacter_phage	2.0e-32	66.3
SPR85431.1\|1134962_1135715_-	Putative phage protein	G0ZNE6	Cronobacter_phage	1.7e-42	41.8
SPR85432.1\|1135783_1136017_-	hypothetical protein	G0ZNE4	Cronobacter_phage	4.3e-13	47.4
SPR85433.1\|1137135_1137516_-	FIG00731856: hypothetical protein	F1C5E2	Cronobacter_phage	1.8e-29	56.1
SPR85434.1\|1137518_1137794_-	hypothetical protein	NA	NA	NA	NA
SPR85435.1\|1137804_1138899_-	FIG01045895: hypothetical protein	F1C5E1	Cronobacter_phage	2.2e-123	62.8
SPR85436.1\|1138910_1139339_-	gp8	F1C5E0	Cronobacter_phage	8.1e-42	60.8
SPR85437.1\|1139342_1140728_-	gp7	F1C5D9	Cronobacter_phage	1.5e-153	59.7
SPR85438.1\|1141250_1141979_-	COG0840: Methyl-accepting chemotaxis protein	F1C5D8	Cronobacter_phage	1.8e-94	71.1
SPR85439.1\|1142196_1143660_-	gp5	F1C5D7	Cronobacter_phage	4.0e-149	56.1
SPR85440.1\|1143672_1144848_-\|terminase	Phage terminase, large subunit	Q5G8Y7	Enterobacteria_phage	2.8e-217	94.0
SPR85441.1\|1145452_1146079_-	FIG00956635: hypothetical protein	I6S676	Salmonella_phage	8.4e-104	84.9
SPR85442.1\|1147820_1147958_-	hypothetical protein	NA	NA	NA	NA
SPR85443.1\|1147960_1148131_-	Phage outer membrane lytic protein Rz; Endopeptidase	H6WZK2	Escherichia_phage	3.1e-13	74.1
SPR85444.1\|1148424_1148955_-	phage lysozyme	G9L6J6	Escherichia_phage	5.4e-80	79.7
SPR85445.1\|1148957_1149074_-	hypothetical protein	NA	NA	NA	NA
SPR85446.1\|1150502_1151177_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.0e-55	54.6
SPR85447.1\|1151188_1151329_-	hypothetical protein	NA	NA	NA	NA
SPR85448.1\|1151325_1151961_-	Phage NinG rap recombination	M9NYX8	Enterobacteria_phage	2.2e-80	77.0
SPR85449.1\|1152104_1152572_-	Phage NinB DNA recombination	Q8VNP6	Enterobacteria_phage	1.5e-33	46.5
SPR85450.1\|1152762_1153020_-	DNA polymerase III theta subunit	G8C7V1	Escherichia_phage	6.4e-26	74.0
SPR85451.1\|1153348_1153546_-	hypothetical protein	NA	NA	NA	NA
SPR85452.1\|1153538_1153805_-	Phage protein	A0A077SLR0	Escherichia_phage	4.6e-27	69.8
SPR85453.1\|1153797_1154820_-	hypothetical protein	A0A248SKW5	Klebsiella_phage	1.7e-61	71.8
SPR85454.1\|1155334_1155778_-	hypothetical protein	I6RSM9	Salmonella_phage	3.9e-07	56.2
SPR85455.1\|1155837_1156035_-	hypothetical protein	NA	NA	NA	NA
SPR85456.1\|1156027_1156291_-	Phage protein	T1S9K2	Salmonella_phage	1.3e-29	75.6
SPR85457.1\|1156287_1156710_-	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
SPR85458.1\|1156706_1157009_-	hypothetical protein	NA	NA	NA	NA
SPR85459.1\|1157005_1157743_-	Origin specific replication binding factor	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
SPR85460.1\|1157739_1158705_-	FIG00640106: hypothetical protein	K7PGZ0	Enterobacteria_phage	5.1e-60	78.9
SPR85461.1\|1158764_1159562_-	Predicted transcriptional regulators	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
SPR85462.1\|1159647_1159869_-	hypothetical protein	NA	NA	NA	NA
SPR85463.1\|1160519_1160936_+	COG2932: Predicted transcriptional regulator	Q76H56	Enterobacteria_phage	9.9e-69	89.1
SPR85464.1\|1160958_1161078_+	hypothetical protein	NA	NA	NA	NA
SPR85465.1\|1162577_1162781_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.0e-18	71.6
SPR85466.1\|1163027_1163216_+	hypothetical protein	NA	NA	NA	NA
SPR85467.1\|1163244_1163403_+	hypothetical protein	NA	NA	NA	NA
SPR85468.1\|1163492_1163777_+	hypothetical protein	G8C7T1	Escherichia_phage	1.7e-40	81.9
1163929:1163942	attL	NA	NA	NA	NA
SPR85469.1\|1164417_1164540_+	hypothetical protein	NA	NA	NA	NA
SPR85470.1\|1164656_1165160_+	phage-related exonuclease	A0A0S2SY31	Pseudomonas_phage	4.6e-44	59.4
SPR85471.1\|1165188_1165716_+	putative DNA methylase	Q9ZWX6	Enterobacteria_phage	1.1e-56	61.0
SPR85472.1\|1165712_1165931_+	Phage protein	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
SPR85473.1\|1166144_1167308_+\|integrase	Phage integrase	G8C7S0	Escherichia_phage	2.9e-203	87.1
SPR85474.1\|1167739_1168606_+	Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
1168352:1168365	attR	NA	NA	NA	NA
SPR85475.1\|1168607_1168820_+	FIG002958: hypothetical protein	NA	NA	NA	NA
SPR85476.1\|1168865_1170251_-\|tRNA	Cysteinyl-tRNA synthetase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_4

3802894 : 3859042

Klebsiella_phage(51.35%)

terminase,holin,tRNA,tail,portal,capsid,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPR87949.1\|3802894_3804313_+\|tRNA	Glutamyl-tRNA synthetase	NA	NA	NA	NA
SPR87950.1\|3804364_3804757_-	FIG00731774: hypothetical protein	NA	NA	NA	NA
SPR87951.1\|3804760_3805114_-	Putative negative regulator	NA	NA	NA	NA
SPR87952.1\|3805735_3807907_+	FIG00732589: hypothetical protein	NA	NA	NA	NA
SPR87953.1\|3807955_3809158_-	Na+ dependent nucleoside transporter NupC	NA	NA	NA	NA
SPR87954.1\|3809567_3810746_+	Manganese transport protein MntH	NA	NA	NA	NA
SPR87955.1\|3810803_3811157_-	FIG00731689: hypothetical protein	NA	NA	NA	NA
SPR87956.1\|3811287_3812244_-	Putative ion-channel protein	NA	NA	NA	NA
SPR87957.1\|3812460_3814122_+	Pyruvate decarboxylase; Alpha-keto-acid decarboxylase	NA	NA	NA	NA
SPR87958.1\|3814118_3815354_-	Chloride channel protein	NA	NA	NA	NA
SPR87959.1\|3815749_3816583_+	Glucokinase	NA	NA	NA	NA
SPR87960.1\|3816636_3817389_-	Hypothetical response regulatory protein ypdB	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
SPR87961.1\|3817385_3819065_-\|lysis	Autolysis histidine kinase LytS	Q9EYF3	Enterobacteria_phage	3.3e-46	28.4
SPR87962.1\|3819081_3819195_+	hypothetical protein	NA	NA	NA	NA
SPR87963.1\|3819191_3819377_-	hypothetical protein	NA	NA	NA	NA
SPR87964.1\|3819465_3820680_+	Uncharacterized PLP-dependent aminotransferase YfdZ	NA	NA	NA	NA
SPR87965.1\|3821160_3822357_-	Cyanate transport protein CynX	NA	NA	NA	NA
SPR87966.1\|3822353_3822812_-	Probable deaminase	A0A0B5J096	Pandoravirus	7.2e-12	33.1
SPR87967.1\|3822944_3823853_+	Cyn operon transcriptional activator	A0A2P0ZL89	Lactobacillus_phage	4.6e-10	24.2
SPR87968.1\|3823862_3824744_-	FIG00731430: hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
SPR87969.1\|3825110_3825593_-	Tryptophan synthase beta chain like	NA	NA	NA	NA
SPR87970.1\|3826111_3827281_+	Mobile element protein	A0A2R2Z2Y0	Escherichia_phage	1.1e-200	85.5
SPR87971.1\|3827313_3828252_+	hypothetical protein	J9Q7Y9	Salmonella_phage	5.8e-08	31.7
SPR87972.1\|3828460_3829069_-	Phage EaA protein	S4TSR6	Salmonella_phage	4.8e-48	82.4
SPR87973.1\|3829065_3829278_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
SPR87974.1\|3829277_3830018_-	Phage EaA protein	R9TPK2	Aeromonas_phage	2.5e-30	97.3
SPR87975.1\|3830014_3830191_-	hypothetical protein	NA	NA	NA	NA
SPR87976.1\|3830295_3830706_-	hypothetical protein	NA	NA	NA	NA
SPR87977.1\|3830702_3830837_-	hypothetical protein	NA	NA	NA	NA
SPR87978.1\|3830833_3831619_-	putative chromosome partitioning protein	C7BGF1	Burkholderia_phage	8.1e-64	53.3
SPR87979.1\|3833169_3833742_+	Orf33	K7PJS5	Enterobacterial_phage	2.7e-69	88.2
SPR87980.1\|3834148_3835117_+	Primosomal protein I	U5P0A0	Shigella_phage	5.5e-86	66.4
SPR87981.1\|3835113_3835923_+	Methyl-directed repair DNA adenine methylase	A0A1C9II58	Salmonella_phage	3.5e-110	69.3
SPR87982.1\|3836124_3836310_+	Holliday junction resolvase / Crossover junction endodeoxyribonuclease rusA	Q8HA93	Salmonella_phage	2.2e-20	75.4
SPR87983.1\|3836322_3837303_+	FIG074102: hypothetical protein	A0A291AWV9	Escherichia_phage	1.1e-134	66.9
SPR87984.1\|3837316_3837895_+	Phage antitermination protein Q	A0A0U2S606	Escherichia_phage	1.9e-49	55.6
SPR87985.1\|3838443_3838755_+\|holin	Putative holin protein	A0A286N2Q5	Klebsiella_phage	1.1e-40	83.5
SPR87986.1\|3838751_3839291_+	FIG00621989: hypothetical protein	A0A286N2Q6	Klebsiella_phage	3.1e-99	96.6
SPR87987.1\|3839287_3839635_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.7e-38	78.3
SPR87988.1\|3839631_3839907_+	hypothetical protein	G8C7W1	Escherichia_phage	2.1e-22	65.2
SPR87989.1\|3839923_3840055_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.6e-09	77.8
SPR87990.1\|3840611_3841922_+	hypothetical protein	NA	NA	NA	NA
SPR87991.1\|3841998_3842244_+	hypothetical protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
SPR87992.1\|3843222_3843657_+	FIG00461598: hypothetical protein	A0A286S1P9	Klebsiella_phage	2.4e-73	99.3
SPR87993.1\|3843666_3845199_+\|terminase	Phage terminase, large subunit	A0A286S1M9	Klebsiella_phage	3.9e-296	100.0
SPR87994.1\|3845642_3846479_+\|portal	Phage portal protein	A0A286S1N5	Klebsiella_phage	9.3e-159	100.0
SPR87995.1\|3846484_3847165_+\|capsid	Phage capsid and scaffold	A0A286S1N1	Klebsiella_phage	6.0e-124	99.6
SPR87996.1\|3847176_3848340_+\|capsid	Phage major capsid protein	A0A286S1R4	Klebsiella_phage	7.7e-212	99.7
SPR87997.1\|3848566_3848893_+	hypothetical protein	A0A286S294	Klebsiella_phage	7.5e-56	100.0
SPR87998.1\|3848953_3849151_+	Phage protein	A0A286S2A5	Klebsiella_phage	1.7e-26	100.0
SPR87999.1\|3849477_3850017_+	hypothetical protein	A0A286S249	Klebsiella_phage	2.3e-94	99.4
SPR88000.1\|3850970_3851354_+	Lambda gpG analog	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
SPR88001.1\|3851356_3851620_+	Orf18	A0A286S1P2	Klebsiella_phage	3.0e-39	91.9
SPR88002.1\|3852101_3854639_+\|tail	Phage tail length tape-measure protein 1	A0A286S1S3	Klebsiella_phage	0.0e+00	74.4
SPR88003.1\|3855104_3855587_+	FIG00732879: hypothetical protein	A0A286S2B1	Klebsiella_phage	3.9e-85	98.8
SPR88004.1\|3855596_3855977_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	1.8e-69	96.0
SPR88005.1\|3855973_3859042_+	FIG00731921: hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	97.7

DBSCAN-SWA_5

4087003 : 4093908

Planktothrix_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPR88204.1\|4087003_4087867_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	G9BWD6	Planktothrix_phage	5.7e-10	27.5
SPR88205.1\|4087877_4088651_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	G9BWD6	Planktothrix_phage	3.9e-26	36.7
SPR88206.1\|4088891_4089788_-	Transcription regulator [contains diacylglycerol kinase catalytic domain]	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
SPR88207.1\|4090030_4091392_-\|protease	Putative protease	Q6DW11	Phage_TP	1.8e-207	94.8
SPR88208.1\|4091710_4092433_-	Response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
SPR88209.1\|4092429_4093908_-	Sensory histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_6

4363306 : 4410746

Salmonella_phage(27.45%)

terminase,integrase

attL 4361573:4361590|attR 4400271:4400288

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4361573:4361590	attL	NA	NA	NA	NA
SPR88453.1\|4363306_4364698_+	metabolite/H symporter, major facilitator superfamily (MFS)	Q6JIH2	Burkholderia_virus	1.0e-61	36.8
SPR88454.1\|4364709_4365519_+	Hypothetical ABC transport system, periplasmic component	NA	NA	NA	NA
SPR88455.1\|4365493_4365703_-	LysR family transcriptional regulator YbhD	NA	NA	NA	NA
SPR88456.1\|4365759_4367022_-\|integrase	Phage integrase	A0A286S1S8	Klebsiella_phage	1.7e-233	95.0
SPR88457.1\|4367064_4367256_-	Phage excisionase	A0A286S2A4	Klebsiella_phage	5.2e-25	91.4
SPR88458.1\|4367313_4367532_-	Phage protein	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
SPR88459.1\|4367528_4367738_-	hypothetical protein	NA	NA	NA	NA
SPR88460.1\|4367734_4368040_-	hypothetical protein	A0A1B3AZN4	Gordonia_phage	7.4e-05	35.6
SPR88461.1\|4368036_4368228_-	Phage protein	A0A0P0ZC60	Stx2-converting_phage	1.6e-13	64.4
SPR88462.1\|4368224_4368989_-	Phage-related protein	Q71T76	Escherichia_phage	2.7e-72	58.7
SPR88463.1\|4369972_4370500_-	putative DNA methylase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
SPR88464.1\|4370651_4371170_-	Phage exonuclease; Putative phage-encoded enzyme involved in integration-recombination	A0A0M3ULE0	Salmonella_phage	5.5e-93	94.8
SPR88465.1\|4371947_4372793_-	FIG01078329: hypothetical protein	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
SPR88466.1\|4372808_4373093_-	hypothetical protein	G8C7T1	Escherichia_phage	4.3e-39	78.7
SPR88467.1\|4373182_4373341_-	hypothetical protein	NA	NA	NA	NA
SPR88468.1\|4373369_4373528_-	hypothetical protein	NA	NA	NA	NA
SPR88469.1\|4373545_4373758_+	hypothetical protein	NA	NA	NA	NA
SPR88470.1\|4374989_4375139_+	Phage repressor protein C1	H6WRX6	Salmonella_phage	5.1e-12	69.4
SPR88471.1\|4375225_4376023_+	Predicted transcriptional regulators	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
SPR88472.1\|4376082_4377048_+	FIG00640106: hypothetical protein	K7PGZ0	Enterobacteria_phage	5.1e-60	78.9
SPR88473.1\|4377044_4377782_+	Origin specific replication binding factor	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
SPR88474.1\|4377778_4378081_+	hypothetical protein	NA	NA	NA	NA
SPR88475.1\|4378077_4378500_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
SPR88476.1\|4378496_4378757_+	Phage protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
SPR88477.1\|4378753_4378867_+	hypothetical protein	A0A1U8QWK2	Salmonella_phage	9.0e-09	67.6
SPR88478.1\|4378863_4379289_+	hypothetical protein	NA	NA	NA	NA
SPR88479.1\|4379288_4379501_+	Phage protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
SPR88480.1\|4379497_4379788_+	hypothetical protein	F1C5B5	Cronobacter_phage	5.7e-07	50.9
SPR88481.1\|4381043_4381499_+	FIG00638895: hypothetical protein	K7P7B8	Enterobacteria_phage	4.0e-55	68.2
SPR88482.1\|4381661_4382300_+	Phage NinG rap recombination	H6WRY9	Salmonella_phage	1.2e-73	68.4
SPR88483.1\|4382296_4382437_+	hypothetical protein	NA	NA	NA	NA
SPR88484.1\|4383096_4383243_+	hypothetical protein	M9NZB0	Enterobacteria_phage	1.3e-12	76.6
SPR88485.1\|4384757_4385249_+	Phage lysin # Phage lysozyme or muramidase	A0A1V0E5Q7	Salmonella_phage	3.2e-74	84.4
SPR88486.1\|4385245_4385713_+	Phage outer membrane lytic protein Rz; Endopeptidase	Q76H63	Enterobacteria_phage	2.2e-56	73.5
SPR88487.1\|4385715_4385853_+	hypothetical protein	NA	NA	NA	NA
SPR88488.1\|4386209_4386698_+\|terminase	Phage terminase, small subunit	NA	NA	NA	NA
SPR88489.1\|4386648_4388049_+\|terminase	Phage terminase, large subunit	A0A077KAW0	Edwardsiella_phage	7.2e-188	69.2
SPR88490.1\|4388232_4388373_-	hypothetical protein	NA	NA	NA	NA
SPR88491.1\|4388352_4389738_+	Phage protein	A0A0M4S6U1	Salmonella_phage	1.8e-183	67.8
SPR88492.1\|4390387_4390582_+	hypothetical protein	NA	NA	NA	NA
SPR88493.1\|4390789_4391794_+	FIG01070919: hypothetical protein	A0A0M4R5A6	Salmonella_phage	3.4e-83	51.6
SPR88494.1\|4391797_4392292_+	FIG00643583: hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	2.1e-49	61.5
SPR88495.1\|4392303_4393245_+	COG4834: Uncharacterized protein conserved in bacteria	A0A2H4J191	uncultured_Caudovirales_phage	7.8e-138	77.4
SPR88496.1\|4393284_4393566_+	hypothetical protein	NA	NA	NA	NA
SPR88497.1\|4393534_4393954_+	FIG00643583: hypothetical protein	A0A0M5M3S2	Salmonella_phage	1.1e-40	61.5
SPR88498.1\|4393950_4394457_+	Phage protein	A0A2H4J488	uncultured_Caudovirales_phage	2.4e-16	37.2
SPR88499.1\|4394456_4394843_+	Phage protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.8e-49	79.0
SPR88500.1\|4394937_4395378_+	FIG00643583: hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
SPR88501.1\|4395381_4396527_+	Phage-related protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	77.2
SPR88502.1\|4396536_4396980_+	FIG00643583: hypothetical protein	A0A0M5M1K6	Salmonella_phage	2.1e-61	80.0
SPR88503.1\|4396983_4397403_+	Putative bacteriophage protein	A0A2H4J2V6	uncultured_Caudovirales_phage	8.8e-41	63.4
SPR88504.1\|4397420_4397597_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.7e-17	84.0
SPR88505.1\|4397586_4399506_+	FIG00639358: hypothetical protein	A0A0M4REK7	Salmonella_phage	3.0e-192	72.3
SPR88506.1\|4399811_4400105_+	FIG00643583: hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	3.5e-20	56.2
SPR88507.1\|4400180_4400408_+	probable bacteriophage protein STY1063	A0A2H4J495	uncultured_Caudovirales_phage	1.7e-19	54.7
4400271:4400288	attR	NA	NA	NA	NA
SPR88508.1\|4400410_4401442_+	FIG00643583: hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	3.5e-99	54.0
SPR88509.1\|4401542_4401776_+	FIG01200701: possible membrane protein	A0A2H4J1A5	uncultured_Caudovirales_phage	8.9e-19	52.6
SPR88510.1\|4402359_4403115_+	Phage-related protein	A0A0M5M1K7	Salmonella_phage	4.0e-84	66.0
SPR88511.1\|4403114_4403468_+	FIG00643583: hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	1.8e-50	79.5
SPR88512.1\|4403473_4404667_+	FIG00643583: hypothetical protein	A0A0M4RD32	Salmonella_phage	8.3e-161	75.2
SPR88513.1\|4404663_4405437_+	Putative bacteriophage protein	A0A0M5M1K4	Salmonella_phage	1.8e-68	51.0
SPR88514.1\|4406278_4407202_-	Mobile element protein	Q9MCT5	Escherichia_phage	1.1e-176	99.3
SPR88515.1\|4407297_4409274_+	FIG00644701: hypothetical protein	A0A286S1P0	Klebsiella_phage	8.1e-28	28.4
SPR88516.1\|4410189_4410429_+	hypothetical protein	K7P7N3	Enterobacteria_phage	1.1e-16	54.4
SPR88517.1\|4410539_4410746_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.9e-09	49.2

DBSCAN-SWA_7

5103253 : 5114128

Escherichia_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPR89191.1\|5103253_5106361_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
SPR89192.1\|5106415_5107681_+	Lactose permease	NA	NA	NA	NA
SPR89193.1\|5107711_5108800_-	putative RecF protein	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
SPR89194.1\|5108886_5109147_-	FIG00732096: hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
SPR89195.1\|5109444_5110305_+	Beta-lactamase	A0A077SL40	Escherichia_phage	2.2e-155	99.3
SPR89196.1\|5110325_5111087_-	Glycerol-3-phosphate regulon repressor, DeoR family	A0A077SK06	Escherichia_phage	1.9e-134	100.0
SPR89197.1\|5111348_5112251_+	D-beta-hydroxybutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
SPR89198.1\|5112262_5112895_+	FIG00641944: hypothetical protein	A0A077SLJ7	Escherichia_phage	8.5e-96	98.9
SPR89199.1\|5112891_5113515_+	FIG00641944: hypothetical protein	A0A077SLJ7	Escherichia_phage	2.5e-108	98.6
SPR89200.1\|5113507_5114128_+	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	A0A077SK32	Escherichia_phage	8.0e-115	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage