CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992436	Staphylococcus aureus isolate 1549-REV genome assembly, chromosome: I	4 crisprs	NA	2	0	0	0

Cas Category Instructions

Results visualization

1. LT992436

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CRISPR-Cas detection and classification

Crispr_ID: LT992436_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992436_1

1239985-1240123

Orphan

Consensus_repeat	Method
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992436_1

>merge|LT992436|1|1239985-1240123|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTCGAA

>LT992436|1|1|1239985-1240123|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	AGCTCACAAAACCCTTGATATCATTGGTTTCCCATGA
TTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTCGAA

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Crispr_ID: LT992436_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992436_2

1430971-1431064

Orphan

Consensus_repeat	Method
TTCTTCAAATTTATTTGTTAGAAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992436_2

>merge|LT992436|2|1430971-1431064|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGGCTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTCTTCTTCAAATTTATTTGTTAGAAAGG

>LT992436|2|2|1430971-1431064|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGG	CTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTC
TTCTTCAAATTTATTTGTTAGAAAGG

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Crispr_ID: LT992436_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992436_3

2437182-2437283

Orphan

Consensus_repeat	Method
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992436_3

>merge|LT992436|3|2437182-2437283|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAACCCCTAATTAATAAATTAAAAGGGG

>LT992436|3|3|2437182-2437283|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTG
CATAAGAACCCCTAATTAATAAATTAAAAGGGG

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Crispr_ID: LT992436_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992436_4

2647048-2647193

Orphan

Consensus_repeat	Method
CAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGCCAG	PILER-CR

2 spacers

The CRISPR arrays of LT992436_4

>merge|LT992436|4|2647048-2647193|PILER-CR
CGGGGCCCCAACACAGAGAAATTTAGGAGCCAATTTCTACAGACAATACAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGTGGAAAGCCAG

>LT992436|4|1|2647048-2647193|PILER-CR
CGGGGCCCCAACACAGAGAAATTTAGGAGCCAATTTCTACAGAC	AATACAAGTTGGCGGGGCCCCAACACAGA
AGCTGGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGG	CCCCAACACAGAAG
CTGGTGGAAAGCCAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	30035-30048	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	130496-130509	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	350011-350024	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	1267738-1267751	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	1278544-1278557	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	1278658-1278671	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	1278718-1278731	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	1313112-1313125	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	1471625-1471638	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	1983162-1983175	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	2020315-2020328	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	2542274-2542287	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	2598342-2598355	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	2647194-2647207	0	1.0
LT992436_4	4.2\|2647165\|14\|LT992436\|PILER-CR	2647165-2647178	14	LT992436.1	2647250-2647263	0	1.0
LT992436_1	1.1\|1240036\|37\|LT992436\|CRISPRCasFinder	1240036-1240072	37	LT992436.1	1239947-1239983	2	0.946

1. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 30035-30048, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

2. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 130496-130509, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

3. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 350011-350024, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

4. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 1267738-1267751, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

5. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 1278544-1278557, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

6. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 1278658-1278671, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

7. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 1278718-1278731, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

8. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 1313112-1313125, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

9. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 1471625-1471638, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

10. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 1983162-1983175, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

11. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 2020315-2020328, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

12. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 2542274-2542287, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

13. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 2598342-2598355, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

14. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 2647194-2647207, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

15. spacer 4.2|2647165|14|LT992436|PILER-CR matches to position: 2647250-2647263, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

16. spacer 1.1|1240036|37|LT992436|CRISPRCasFinder matches to position: 1239947-1239983, mismatch: 2, identity: 0.946

agctcacaaaacccttgatatcattggtttcccatga	CRISPR spacer
agctcacaaaacccttgatatcactggtttctcatga	Protospacer
***********************.*******.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage