CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992435	Staphylococcus aureus isolate 1549-SCV genome assembly, chromosome: I	4 crisprs	NA	2	0	0	0

Cas Category Instructions

Results visualization

1. LT992435

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CRISPR-Cas detection and classification

Crispr_ID: LT992435_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992435_1

1239985-1240123

Orphan

Consensus_repeat	Method
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992435_1

>merge|LT992435|1|1239985-1240123|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTCGAA

>LT992435|1|1|1239985-1240123|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	AGCTCACAAAACCCTTGATATCATTGGTTTCCCATGA
TTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTCGAA

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Crispr_ID: LT992435_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992435_2

1430970-1431063

Orphan

Consensus_repeat	Method
TTCTTCAAATTTATTTGTTAGAAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992435_2

>merge|LT992435|2|1430970-1431063|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGGCTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTCTTCTTCAAATTTATTTGTTAGAAAGG

>LT992435|2|2|1430970-1431063|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGG	CTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTC
TTCTTCAAATTTATTTGTTAGAAAGG

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Crispr_ID: LT992435_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992435_3

2437181-2437282

Orphan

Consensus_repeat	Method
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992435_3

>merge|LT992435|3|2437181-2437282|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAACCCCTAATTAATAAATTAAAAGGGG

>LT992435|3|3|2437181-2437282|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTG
CATAAGAACCCCTAATTAATAAATTAAAAGGGG

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Crispr_ID: LT992435_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992435_4

2647047-2647192

Orphan

Consensus_repeat	Method
CAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGCCAG	PILER-CR

2 spacers

The CRISPR arrays of LT992435_4

>merge|LT992435|4|2647047-2647192|PILER-CR
CGGGGCCCCAACACAGAGAAATTTAGGAGCCAATTTCTACAGACAATACAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGTGGAAAGCCAG

>LT992435|4|1|2647047-2647192|PILER-CR
CGGGGCCCCAACACAGAGAAATTTAGGAGCCAATTTCTACAGAC	AATACAAGTTGGCGGGGCCCCAACACAGA
AGCTGGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGG	CCCCAACACAGAAG
CTGGTGGAAAGCCAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	30035-30048	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	130496-130509	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	350011-350024	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	1267737-1267750	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	1278543-1278556	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	1278657-1278670	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	1278717-1278730	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	1313111-1313124	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	1471624-1471637	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	1983161-1983174	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	2020314-2020327	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	2542273-2542286	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	2598341-2598354	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	2647193-2647206	0	1.0
LT992435_4	4.2\|2647164\|14\|LT992435\|PILER-CR	2647164-2647177	14	LT992435.1	2647249-2647262	0	1.0
LT992435_1	1.1\|1240036\|37\|LT992435\|CRISPRCasFinder	1240036-1240072	37	LT992435.1	1239947-1239983	2	0.946

1. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 30035-30048, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

2. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 130496-130509, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

3. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 350011-350024, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

4. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 1267737-1267750, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

5. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 1278543-1278556, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

6. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 1278657-1278670, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

7. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 1278717-1278730, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

8. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 1313111-1313124, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

9. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 1471624-1471637, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

10. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 1983161-1983174, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

11. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 2020314-2020327, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

12. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 2542273-2542286, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

13. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 2598341-2598354, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

14. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 2647193-2647206, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

15. spacer 4.2|2647164|14|LT992435|PILER-CR matches to position: 2647249-2647262, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

16. spacer 1.1|1240036|37|LT992435|CRISPRCasFinder matches to position: 1239947-1239983, mismatch: 2, identity: 0.946

agctcacaaaacccttgatatcattggtttcccatga	CRISPR spacer
agctcacaaaacccttgatatcactggtttctcatga	Protospacer
***********************.*******.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage