CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992461	Staphylococcus aureus isolate 8_LA_272 genome assembly, chromosome: I	10 crisprs	NA	5	4	0	0

Cas Category Instructions

Results visualization

1. LT992461

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CRISPR-Cas detection and classification

Crispr_ID: LT992461_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_1

11359-11452

Orphan

Consensus_repeat	Method
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992461_1

>merge|LT992461|1|11359-11452|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

>LT992461|1|1|11359-11452|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	AGAATTTCAAAAAAGAAATTCTACAG
GCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

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Crispr_ID: LT992461_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_2

293398-293610

Orphan

Consensus_repeat	Method
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992461_2

>merge|LT992461|2|293398-293610|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATGTGCTGGTACCACGATGCGTCTTGATGTAGTGCTATGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATGTGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTTTGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

>LT992461|2|2|293398-293610|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATG	TGCTGGTACCACGATGCGTCTTGATGTAGTGCTA
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	TGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTT
TGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

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Crispr_ID: LT992461_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_3

349028-349178

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992461_3

>merge|LT992461|3|349028-349178|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTAAGGGGCTCTTATGCAGTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGAGCTTCTTTCTA

>LT992461|3|3|349028-349178|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTAAGGGGCTCTTATGCA	GTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGAGCTTCTTTCTA

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Crispr_ID: LT992461_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_4

689163-689257

Orphan

Consensus_repeat	Method
AGGCTCTTATGCAGTTGGTGCGAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992461_4

>merge|LT992461|4|689163-689257|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAGAGGCTCTTATGCAGTTGTTGCGAAGCAA

>LT992461|4|4|689163-689257|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAA	GCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAG
AGGCTCTTATGCAGTTGTTGCGAAGCAA

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Crispr_ID: LT992461_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_5

1264839-1265038

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of LT992461_5

>merge|LT992461|5|1264839-1265038|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCTGGCGAAAATACAGCTTACAATAATGTGCGAGTTGGCAGGCCTCCAACACAGAGAAATTGGAACAGCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTAGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGGCCCCAACACAGAAGCT

>LT992461|5|5|1264839-1265038|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCT	GGCGAAAATACAGCTTACAATAATG
TGCGAGTTGGCAGGCCTCCAACACAGAGAAA	TTGGAACAGCAATTTCTACAGACAA
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	AGCGAAAAGTCAGCTTACAATAATGT
GCAAGTTGGCGGGGGCCCCAACACAGAAGCT

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Crispr_ID: LT992461_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_6

1663463-1663571

Orphan

Consensus_repeat	Method
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992461_6

>merge|LT992461|6|1663463-1663571|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAAAGCCTCTAATCACTAGAGTTCAAGAGGCTTTAAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

>LT992461|6|6|1663463-1663571|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	AGCCTCTAATCACTAGAGTTCAAGAGGCTTT
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

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Crispr_ID: LT992461_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_7

1825817-1825899

Orphan

Consensus_repeat	Method
CACCCCAACTCGCATTGCTTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992461_7

>merge|LT992461|7|1825817-1825899|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAA

>LT992461|7|7|1825817-1825899|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAA	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC
CACCCCAACTCGCATTGCCTGTAGAA

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Crispr_ID: LT992461_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_8

1875169-1875249

Orphan

Consensus_repeat	Method
TCTTTATCATTTCTGTCCCACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992461_8

>merge|LT992461|8|1875169-1875249|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCCAAGAACCAATACATAATAAAGCATAAGTGATTCTTTATCATTTCTCTCCCACTCCC

>LT992461|8|8|1875169-1875249|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCC	AAGAACCAATACATAATAAAGCATAAGTGAT
TCTTTATCATTTCTCTCCCACTCCC

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Crispr_ID: LT992461_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_9

2802450-2802532

Orphan

Consensus_repeat	Method
GAAGCTGACGAAAAAGTCAGCTTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992461_9

>merge|LT992461|9|2802450-2802532|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAAGTCAGCTTAC

>LT992461|9|9|2802450-2802532|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTAC	TATAATGTGCAAGTTGGGGTGGGCCCCAACACA
GAAGCTGACGAAAAAGTCAGCTTAC

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Crispr_ID: LT992461_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992461_10

2890786-2890873

Orphan

Consensus_repeat	Method
AAGAAATTCTACAAGCAATGCGCGTTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992461_10

>merge|LT992461|10|2890786-2890873|CRISPRCasFinder
AAGAAATTCTACAAGCAATGCGCGTTGGGGTGTGGGGCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCGCGTTGGG

>LT992461|10|10|2890786-2890873|CRISPRCasFinder
AAGAAATTCTACAAGCAATGCGCGTTGGG	GTGTGGGGCCCAACATAGAGAATTTCAAAA
AAGAAATTCTACAGGCAATGCGCGTTGGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992461_1	1.1\|11393\|26\|LT992461\|CRISPRCasFinder	11393-11418	26	LT992461.1	109154-109179	0	1.0
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	109107-109137	0	1.0
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	109217-109247	0	1.0
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	177317-177347	0	1.0
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1963079-1963109	0	1.0
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2001910-2001940	0	1.0
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	11320-11350	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	467894-467924	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	512929-512959	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1246851-1246881	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1246909-1246939	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1246967-1246997	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1385507-1385537	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1654930-1654960	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1779500-1779530	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1870762-1870792	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2094875-2094905	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2195173-2195203	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2195227-2195257	1	0.968
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2799987-2800017	1	0.968
LT992461_5	5.1\|1264870\|25\|LT992461\|CRISPRCasFinder	1264870-1264894	25	LT992461.1	1265039-1265063	2	0.92
LT992461_5	5.2\|1264926\|25\|LT992461\|CRISPRCasFinder	1264926-1264950	25	LT992461.1	304472-304496	2	0.92
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	478642-478672	2	0.935
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	910410-910440	2	0.935
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1834824-1834854	2	0.935
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	1874870-1874900	2	0.935
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2404122-2404152	2	0.935
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2450212-2450242	2	0.935
LT992461_7	7.1\|1825843\|31\|LT992461\|CRISPRCasFinder	1825843-1825873	31	LT992461.1	2890761-2890791	2	0.935
LT992461_8	8.1\|1875194\|31\|LT992461\|CRISPRCasFinder	1875194-1875224	31	LT992461.1	1820240-1820270	2	0.935

1. spacer 1.1|11393|26|LT992461|CRISPRCasFinder matches to position: 109154-109179, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

2. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 109107-109137, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

3. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 109217-109247, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

4. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 177317-177347, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

5. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1963079-1963109, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

6. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2001910-2001940, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

7. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 11320-11350, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

8. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 467894-467924, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

9. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 512929-512959, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctgtgttggggccc	Protospacer
********.**********************

10. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1246851-1246881, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

11. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1246909-1246939, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

12. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1246967-1246997, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

13. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1385507-1385537, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

14. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1654930-1654960, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttgggcccc	Protospacer
*************************** ***

15. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1779500-1779530, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

16. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1870762-1870792, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

17. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2094875-2094905, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

18. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2195173-2195203, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

19. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2195227-2195257, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

20. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2799987-2800017, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

21. spacer 5.1|1264870|25|LT992461|CRISPRCasFinder matches to position: 1265039-1265063, mismatch: 2, identity: 0.92

ggcgaaaatacagcttacaataatg	CRISPR spacer
ggcgaaaagtcagcttacaataatg	Protospacer
********  ***************

22. spacer 5.2|1264926|25|LT992461|CRISPRCasFinder matches to position: 304472-304496, mismatch: 2, identity: 0.92

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacaccaattcctacagacaa	Protospacer
******** *****.**********

23. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 478642-478672, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

24. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 910410-910440, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtattgggggcc	Protospacer
*********************.****** **

25. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1834824-1834854, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcatttcgaaattctctatgttggggccc	Protospacer
**** **************.***********

26. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 1874870-1874900, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaatcctctgtgttggggacc	Protospacer
**************.************* **

27. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2404122-2404152, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcggaattctctgtgttggagccc	Protospacer
**********.***************.****

28. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2450212-2450242, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaaatctctgtgttgaggccc	Protospacer
************* ***********.*****

29. spacer 7.1|1825843|31|LT992461|CRISPRCasFinder matches to position: 2890761-2890791, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttgggcccc	Protospacer
****** ******************** ***

30. spacer 8.1|1875194|31|LT992461|CRISPRCasFinder matches to position: 1820240-1820270, mismatch: 2, identity: 0.935

aagaaccaatacataataaagcataagtgat	CRISPR spacer
aagaaccaatacataataaatcattagtgat	Protospacer
******************** *** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992461_5	5.1\|1264870\|25\|LT992461\|CRISPRCasFinder	1264870-1264894	25	NC_014792	Enterobacteria phage vB_EcoM-VR7, complete genome	154175-154199	3	0.88
LT992461_1	1.1\|11393\|26\|LT992461\|CRISPRCasFinder	11393-11418	26	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	17379-17404	4	0.846
LT992461_1	1.1\|11393\|26\|LT992461\|CRISPRCasFinder	11393-11418	26	NZ_CP017210	Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence	2023-2048	4	0.846
LT992461_5	5.2\|1264926\|25\|LT992461\|CRISPRCasFinder	1264926-1264950	25	MW117966	Synechococcus phage S-H9-1, complete genome	42366-42390	4	0.84
LT992461_1	1.1\|11393\|26\|LT992461\|CRISPRCasFinder	11393-11418	26	NC_008443	Borrelia burgdorferi strain Ip21 plasmid, complete sequence	5652-5677	5	0.808
LT992461_1	1.1\|11393\|26\|LT992461\|CRISPRCasFinder	11393-11418	26	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	3460-3485	5	0.808
LT992461_1	1.1\|11393\|26\|LT992461\|CRISPRCasFinder	11393-11418	26	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	13739-13764	5	0.808
LT992461_5	5.2\|1264926\|25\|LT992461\|CRISPRCasFinder	1264926-1264950	25	NZ_CP038259	Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence	11151-11175	5	0.8
LT992461_1	1.1\|11393\|26\|LT992461\|CRISPRCasFinder	11393-11418	26	MK448662	Streptococcus satellite phage Javan97, complete genome	6198-6223	6	0.769
LT992461_5	5.2\|1264926\|25\|LT992461\|CRISPRCasFinder	1264926-1264950	25	NZ_CP047617	Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence	79395-79419	6	0.76
LT992461_2	2.1\|293445\|34\|LT992461\|CRISPRCasFinder	293445-293478	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992461_2	2.1\|293445\|34\|LT992461\|CRISPRCasFinder	293445-293478	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 5.1|1264870|25|LT992461|CRISPRCasFinder matches to NC_014792 (Enterobacteria phage vB_EcoM-VR7, complete genome) position: , mismatch: 3, identity: 0.88

ggcgaaaatacagcttacaataatg	CRISPR spacer
gacgaaaatacatattacaataatg	Protospacer
*.**********  ***********

2. spacer 1.1|11393|26|LT992461|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaataaaatctattg	Protospacer
************** *** ****. *

3. spacer 1.1|11393|26|LT992461|CRISPRCasFinder matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
acaatttcaaaaaagaaatattacac	Protospacer
* ***************** .****

4. spacer 5.2|1264926|25|LT992461|CRISPRCasFinder matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 4, identity: 0.84

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacagcaatttctactggtat	Protospacer
******************* *..*

5. spacer 1.1|11393|26|LT992461|CRISPRCasFinder matches to NC_008443 (Borrelia burgdorferi strain Ip21 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
ccaatttcaaaaaagaaattttccac	Protospacer
  ******************.* **

6. spacer 1.1|11393|26|LT992461|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

7. spacer 1.1|11393|26|LT992461|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

8. spacer 5.2|1264926|25|LT992461|CRISPRCasFinder matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 5, identity: 0.8

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctccagaggt	Protospacer
.**************** **** .

9. spacer 1.1|11393|26|LT992461|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 6, identity: 0.769

agaatttcaaaaaagaaattctacag	CRISPR spacer
gctttttcaaaaaagaaattctagac	Protospacer
.   ******************* *

10. spacer 5.2|1264926|25|LT992461|CRISPRCasFinder matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 6, identity: 0.76

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctacattatc	Protospacer
.*******************

11. spacer 2.1|293445|34|LT992461|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

12. spacer 2.1|293445|34|LT992461|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage