CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992463	Staphylococcus aureus isolate 2_LA_86 genome assembly, chromosome: I	10 crisprs	NA	5	4	0	0

Cas Category Instructions

Results visualization

1. LT992463

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CRISPR-Cas detection and classification

Crispr_ID: LT992463_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_1

497709-497908

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of LT992463_1

>merge|LT992463|1|497709-497908|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCTGGCGAAAATACAGCTTACAATAATGTGCGAGTTGGCAGGCCTCCAACACAGAGAAATTGGAACAGCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTAGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGGCCCCAACACAGAAGCT

>LT992463|1|1|497709-497908|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCT	GGCGAAAATACAGCTTACAATAATG
TGCGAGTTGGCAGGCCTCCAACACAGAGAAA	TTGGAACAGCAATTTCTACAGACAA
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	AGCGAAAAGTCAGCTTACAATAATGT
GCAAGTTGGCGGGGGCCCCAACACAGAAGCT

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Crispr_ID: LT992463_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_2

897486-897594

Orphan

Consensus_repeat	Method
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992463_2

>merge|LT992463|2|897486-897594|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAAAGCCTCTAATCACTAGAGTTCAAGAGGCTTTAAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

>LT992463|2|2|897486-897594|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	AGCCTCTAATCACTAGAGTTCAAGAGGCTTT
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

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Crispr_ID: LT992463_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_3

1059773-1059855

Orphan

Consensus_repeat	Method
CACCCCAACTCGCATTGCTTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992463_3

>merge|LT992463|3|1059773-1059855|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAA

>LT992463|3|3|1059773-1059855|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAA	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC
CACCCCAACTCGCATTGCCTGTAGAA

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Crispr_ID: LT992463_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_4

1109125-1109205

Orphan

Consensus_repeat	Method
TCTTTATCATTTCTGTCCCACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992463_4

>merge|LT992463|4|1109125-1109205|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCCAAGAACCAATACATAATAAAGCATAAGTGATTCTTTATCATTTCTCTCCCACTCCC

>LT992463|4|4|1109125-1109205|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCC	AAGAACCAATACATAATAAAGCATAAGTGAT
TCTTTATCATTTCTCTCCCACTCCC

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Crispr_ID: LT992463_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_5

1993154-1993236

Orphan

Consensus_repeat	Method
GAAGCTGACGAAAAAGTCAGCTTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992463_5

>merge|LT992463|5|1993154-1993236|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAAGTCAGCTTAC

>LT992463|5|5|1993154-1993236|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTAC	TATAATGTGCAAGTTGGGGTGGGCCCCAACACA
GAAGCTGACGAAAAAGTCAGCTTAC

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Crispr_ID: LT992463_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_6

2081508-2081601

Orphan

Consensus_repeat	Method
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992463_6

>merge|LT992463|6|2081508-2081601|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

>LT992463|6|6|2081508-2081601|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	AGAATTTCAAAAAAGAAATTCTACAG
GCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

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Crispr_ID: LT992463_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_7

2322326-2322538

Orphan

Consensus_repeat	Method
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992463_7

>merge|LT992463|7|2322326-2322538|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATGTGCTGGTACCACGATGCGTCTTGATGTAGTGCTATGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATGTGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTTTGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

>LT992463|7|7|2322326-2322538|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATG	TGCTGGTACCACGATGCGTCTTGATGTAGTGCTA
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	TGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTT
TGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

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Crispr_ID: LT992463_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_8

2377957-2378107

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992463_8

>merge|LT992463|8|2377957-2378107|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTAAGGGGCTCTTATGCAGTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGAGCTTCTTTCTA

>LT992463|8|8|2377957-2378107|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTAAGGGGCTCTTATGCA	GTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGAGCTTCTTTCTA

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Crispr_ID: LT992463_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_9

2718094-2718188

Orphan

Consensus_repeat	Method
AGGCTCTTATGCAGTTGGTGCGAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992463_9

>merge|LT992463|9|2718094-2718188|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAGAGGCTCTTATGCAGTTGTTGCGAAGCAA

>LT992463|9|9|2718094-2718188|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAA	GCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAG
AGGCTCTTATGCAGTTGTTGCGAAGCAA

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Crispr_ID: LT992463_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992463_10

2746039-2746149

Orphan

Consensus_repeat	Method
GGTACTTCTGGTGTCGGTGGCGTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992463_10

>merge|LT992463|10|2746039-2746149|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGTTCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTCGGTACTTCTGGTGTCGGTGGTGTTGGT

>LT992463|10|10|2746039-2746149|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGT	TCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTC
GGTACTTCTGGTGTCGGTGGTGTTGGT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1154057-1154087	0	1.0
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1192888-1192918	0	1.0
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2179258-2179288	0	1.0
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2179368-2179398	0	1.0
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2179478-2179508	0	1.0
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2247578-2247608	0	1.0
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	LT992463.1	2179305-2179330	0	1.0
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	LT992463.1	2179415-2179440	0	1.0
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	479721-479751	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	479779-479809	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	479837-479867	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	619428-619458	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	888953-888983	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1013455-1013485	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1104718-1104748	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1285854-1285884	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1386152-1386182	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1386206-1386236	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1990691-1990721	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2081469-2081499	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2496824-2496854	1	0.968
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2541859-2541889	1	0.968
LT992463_1	1.1\|497740\|25\|LT992463\|CRISPRCasFinder	497740-497764	25	LT992463.1	497909-497933	2	0.92
LT992463_1	1.2\|497796\|25\|LT992463\|CRISPRCasFinder	497796-497820	25	LT992463.1	2333400-2333424	2	0.92
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	143275-143305	2	0.935
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1068780-1068810	2	0.935
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1108826-1108856	2	0.935
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1595127-1595157	2	0.935
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	1641217-1641247	2	0.935
LT992463_3	3.1\|1059799\|31\|LT992463\|CRISPRCasFinder	1059799-1059829	31	LT992463.1	2507572-2507602	2	0.935
LT992463_4	4.1\|1109150\|31\|LT992463\|CRISPRCasFinder	1109150-1109180	31	LT992463.1	1054196-1054226	2	0.935

1. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1154057-1154087, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

2. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1192888-1192918, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

3. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2179258-2179288, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

4. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2179368-2179398, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

5. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2179478-2179508, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

6. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2247578-2247608, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

7. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to position: 2179305-2179330, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

8. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to position: 2179415-2179440, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

9. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 479721-479751, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

10. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 479779-479809, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

11. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 479837-479867, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

12. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 619428-619458, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

13. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 888953-888983, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttgggcccc	Protospacer
*************************** ***

14. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1013455-1013485, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

15. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1104718-1104748, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

16. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1285854-1285884, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

17. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1386152-1386182, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

18. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1386206-1386236, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

19. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1990691-1990721, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

20. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2081469-2081499, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

21. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2496824-2496854, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

22. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2541859-2541889, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctgtgttggggccc	Protospacer
********.**********************

23. spacer 1.1|497740|25|LT992463|CRISPRCasFinder matches to position: 497909-497933, mismatch: 2, identity: 0.92

ggcgaaaatacagcttacaataatg	CRISPR spacer
ggcgaaaagtcagcttacaataatg	Protospacer
********  ***************

24. spacer 1.2|497796|25|LT992463|CRISPRCasFinder matches to position: 2333400-2333424, mismatch: 2, identity: 0.92

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacaccaattcctacagacaa	Protospacer
******** *****.**********

25. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 143275-143305, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtattgggggcc	Protospacer
*********************.****** **

26. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1068780-1068810, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcatttcgaaattctctatgttggggccc	Protospacer
**** **************.***********

27. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1108826-1108856, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaatcctctgtgttggggacc	Protospacer
**************.************* **

28. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1595127-1595157, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcggaattctctgtgttggagccc	Protospacer
**********.***************.****

29. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 1641217-1641247, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaaatctctgtgttgaggccc	Protospacer
************* ***********.*****

30. spacer 3.1|1059799|31|LT992463|CRISPRCasFinder matches to position: 2507572-2507602, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

31. spacer 4.1|1109150|31|LT992463|CRISPRCasFinder matches to position: 1054196-1054226, mismatch: 2, identity: 0.935

aagaaccaatacataataaagcataagtgat	CRISPR spacer
aagaaccaatacataataaatcattagtgat	Protospacer
******************** *** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992463_1	1.1\|497740\|25\|LT992463\|CRISPRCasFinder	497740-497764	25	NC_014792	Enterobacteria phage vB_EcoM-VR7, complete genome	154175-154199	3	0.88
LT992463_1	1.2\|497796\|25\|LT992463\|CRISPRCasFinder	497796-497820	25	MW117966	Synechococcus phage S-H9-1, complete genome	42366-42390	4	0.84
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	17379-17404	4	0.846
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	NZ_CP017210	Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence	2023-2048	4	0.846
LT992463_1	1.2\|497796\|25\|LT992463\|CRISPRCasFinder	497796-497820	25	NZ_CP038259	Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence	11151-11175	5	0.8
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	NC_008443	Borrelia burgdorferi strain Ip21 plasmid, complete sequence	5652-5677	5	0.808
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	3460-3485	5	0.808
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	13739-13764	5	0.808
LT992463_1	1.2\|497796\|25\|LT992463\|CRISPRCasFinder	497796-497820	25	NZ_CP047617	Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence	79395-79419	6	0.76
LT992463_6	6.1\|2081542\|26\|LT992463\|CRISPRCasFinder	2081542-2081567	26	MK448662	Streptococcus satellite phage Javan97, complete genome	6198-6223	6	0.769
LT992463_7	7.1\|2322373\|34\|LT992463\|CRISPRCasFinder	2322373-2322406	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992463_7	7.1\|2322373\|34\|LT992463\|CRISPRCasFinder	2322373-2322406	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 1.1|497740|25|LT992463|CRISPRCasFinder matches to NC_014792 (Enterobacteria phage vB_EcoM-VR7, complete genome) position: , mismatch: 3, identity: 0.88

ggcgaaaatacagcttacaataatg	CRISPR spacer
gacgaaaatacatattacaataatg	Protospacer
*.**********  ***********

2. spacer 1.2|497796|25|LT992463|CRISPRCasFinder matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 4, identity: 0.84

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacagcaatttctactggtat	Protospacer
******************* *..*

3. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaataaaatctattg	Protospacer
************** *** ****. *

4. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
acaatttcaaaaaagaaatattacac	Protospacer
* ***************** .****

5. spacer 1.2|497796|25|LT992463|CRISPRCasFinder matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 5, identity: 0.8

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctccagaggt	Protospacer
.**************** **** .

6. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to NC_008443 (Borrelia burgdorferi strain Ip21 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
ccaatttcaaaaaagaaattttccac	Protospacer
  ******************.* **

7. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

8. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

9. spacer 1.2|497796|25|LT992463|CRISPRCasFinder matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 6, identity: 0.76

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctacattatc	Protospacer
.*******************

10. spacer 6.1|2081542|26|LT992463|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 6, identity: 0.769

agaatttcaaaaaagaaattctacag	CRISPR spacer
gctttttcaaaaaagaaattctagac	Protospacer
.   ******************* *

11. spacer 7.1|2322373|34|LT992463|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

12. spacer 7.1|2322373|34|LT992463|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage