CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992465	Staphylococcus aureus isolate 6_LA_232 genome assembly, chromosome: I	11 crisprs	NA	2	1	0	0

Cas Category Instructions

Results visualization

1. LT992465

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CRISPR-Cas detection and classification

Crispr_ID: LT992465_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_1

866372-866452

Orphan

Consensus_repeat	Method
GGGAGTGGGAGAGAAATGATAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992465_1

>merge|LT992465|1|866372-866452|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGAATCACTTATGCTTTATTATGTATTGGTTCTTGGGAGTGGGACAGAAATGATAAAGA

>LT992465|1|1|866372-866452|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGA	ATCACTTATGCTTTATTATGTATTGGTTCTT
GGGAGTGGGACAGAAATGATAAAGA

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Crispr_ID: LT992465_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_2

1077626-1077734

Orphan

Consensus_repeat	Method
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992465_2

>merge|LT992465|2|1077626-1077734|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTTAAAGCCTCTTGAACTCTAGTGATTAGAGGCTTTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

>LT992465|2|2|1077626-1077734|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	AAAGCCTCTTGAACTCTAGTGATTAGAGGCT
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

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Crispr_ID: LT992465_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_3

1976183-1976316

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992465_3

>merge|LT992465|3|1976183-1976316|PILER-CR
TATTGAAGAAGATACAAACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992465|3|1|1976183-1976316|PILER-CR
TATTGAAGAAGATACAA	ACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: LT992465_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_4

1979727-1979860

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992465_4

>merge|LT992465|4|1979727-1979860|PILER-CR
TATTGAAGAAGATACAAACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992465|4|2|1979727-1979860|PILER-CR
TATTGAAGAAGATACAA	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: LT992465_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_5

2004324-2004418

Orphan

Consensus_repeat	Method
TTGCTTCGCAACAACTGCATAAGAGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992465_5

>merge|LT992465|5|2004324-2004418|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCTCTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCACCAACTGCATAAGAGCCT

>LT992465|5|3|2004324-2004418|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCT	CTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGC
TTGCTTCGCACCAACTGCATAAGAGCCT

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Crispr_ID: LT992465_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_6

2048671-2048749

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992465_6

>merge|LT992465|6|2048671-2048749|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>LT992465|6|4|2048671-2048749|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

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Crispr_ID: LT992465_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_7

2064048-2064142

Orphan

Consensus_repeat	Method
GCCTTTCTAACAAATAAATTTGAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992465_7

>merge|LT992465|7|2064048-2064142|CRISPRCasFinder
GCCTTTCTAACAAATAAATTTGAAGAAGACGAAGGAACGCAGTTGGACGTAAAACGTCAACTGCATAAGCCTTTCTAACAAATAAATTTGAAGAA

>LT992465|7|5|2064048-2064142|CRISPRCasFinder
GCCTTTCTAACAAATAAATTTGAAGAA	GACGAAGGAACGCAGTTGGACGTAAAACGTCAACTGCATAA
GCCTTTCTAACAAATAAATTTGAAGAA

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Crispr_ID: LT992465_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_8

2180474-2180559

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992465_8

>merge|LT992465|8|2180474-2180559|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LT992465|8|6|2180474-2180559|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: LT992465_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_9

2344434-2344584

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTTACAACTAAAGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992465_9

>merge|LT992465|9|2344434-2344584|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTATGCATCAACTGCATAAGAGCCCCTTACAACTAAAGTTTAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTT

>LT992465|9|7|2344434-2344584|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTT	GAAAAATAGAGGAACACAGTTGGATGCTATGCATCAAC
TGCATAAGAGCCCCTTACAACTAAAGTT	TAAAAGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTT

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Crispr_ID: LT992465_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_10

2400003-2400215

Orphan

Consensus_repeat	Method
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992465_10

>merge|LT992465|10|2400003-2400215|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCAAAGTAACATGGCACCAACACCAAGCTCCCACAACAGCACATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCATAGCACTACATCAAGACGCATCGTGGTACCAGCACATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

>LT992465|10|8|2400003-2400215|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	AAGTAACATGGCACCAACACCAAGCTCCCACAACAGCA
CATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCA	TAGCACTACATCAAGACGCATCGTGGTACCAGCA
CATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

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Crispr_ID: LT992465_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992465_11

2772591-2772673

Orphan

Consensus_repeat	Method
GTAAGCTGACTTTTTCGTCAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992465_11

>merge|LT992465|11|2772591-2772673|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTCTGTGTTGGGGCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTTCGTCAGCTTC

>LT992465|11|9|2772591-2772673|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTC	TGTGTTGGGGCCCACCCCAACTTGCACATTATA
GTAAGCTGACTTTTTCGTCAGCTTC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992465_8	8.1\|2180504\|26\|LT992465\|CRISPRCasFinder	2180504-2180529	26	LT992465.1	115203-115228	0	1.0
LT992465_8	8.1\|2180504\|26\|LT992465\|CRISPRCasFinder	2180504-2180529	26	LT992465.1	870770-870795	1	0.962
LT992465_1	1.1\|866397\|31\|LT992465\|CRISPRCasFinder	866397-866427	31	LT992465.1	921266-921296	2	0.935
LT992465_8	8.1\|2180504\|26\|LT992465\|CRISPRCasFinder	2180504-2180529	26	LT992465.1	383680-383705	2	0.923
LT992465_8	8.1\|2180504\|26\|LT992465\|CRISPRCasFinder	2180504-2180529	26	LT992465.1	821690-821715	2	0.923
LT992465_8	8.1\|2180504\|26\|LT992465\|CRISPRCasFinder	2180504-2180529	26	LT992465.1	866625-866650	2	0.923
LT992465_8	8.1\|2180504\|26\|LT992465\|CRISPRCasFinder	2180504-2180529	26	LT992465.1	2389078-2389103	2	0.923

1. spacer 8.1|2180504|26|LT992465|CRISPRCasFinder matches to position: 115203-115228, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 8.1|2180504|26|LT992465|CRISPRCasFinder matches to position: 870770-870795, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctatgttggggccccg	Protospacer
***.**********************

3. spacer 1.1|866397|31|LT992465|CRISPRCasFinder matches to position: 921266-921296, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

4. spacer 8.1|2180504|26|LT992465|CRISPRCasFinder matches to position: 383680-383705, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagtttctgtgttggggccccg	Protospacer
*******.****.*************

5. spacer 8.1|2180504|26|LT992465|CRISPRCasFinder matches to position: 821690-821715, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccaccagcttctgtgttggggccccg	Protospacer
**.*********.*************

6. spacer 8.1|2180504|26|LT992465|CRISPRCasFinder matches to position: 866625-866650, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgctactatgttggggccccg	Protospacer
***** *** ****************

7. spacer 8.1|2180504|26|LT992465|CRISPRCasFinder matches to position: 2389078-2389103, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992465_10	10.2\|2400135\|34\|LT992465\|CRISPRCasFinder	2400135-2400168	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992465_10	10.2\|2400135\|34\|LT992465\|CRISPRCasFinder	2400135-2400168	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 10.2|2400135|34|LT992465|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

2. spacer 10.2|2400135|34|LT992465|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage