CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992466	Staphylococcus aureus isolate 4_LA_208 genome assembly, chromosome: I	10 crisprs	NA	3	1	0	0

Cas Category Instructions

Results visualization

1. LT992466

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CRISPR-Cas detection and classification

Crispr_ID: LT992466_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_1

513534-513667

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992466_1

>merge|LT992466|1|513534-513667|PILER-CR
TATTGAAGAAGATACAAACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992466|1|1|513534-513667|PILER-CR
TATTGAAGAAGATACAA	ACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: LT992466_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_2

517078-517211

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992466_2

>merge|LT992466|2|517078-517211|PILER-CR
TATTGAAGAAGATACAAACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992466|2|2|517078-517211|PILER-CR
TATTGAAGAAGATACAA	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: LT992466_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_3

541675-541769

Orphan

Consensus_repeat	Method
TTGCTTCGCAACAACTGCATAAGAGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992466_3

>merge|LT992466|3|541675-541769|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCTCTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCACCAACTGCATAAGAGCCT

>LT992466|3|1|541675-541769|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCT	CTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGC
TTGCTTCGCACCAACTGCATAAGAGCCT

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Crispr_ID: LT992466_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_4

586023-586101

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992466_4

>merge|LT992466|4|586023-586101|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>LT992466|4|2|586023-586101|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

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Crispr_ID: LT992466_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_5

717894-717979

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992466_5

>merge|LT992466|5|717894-717979|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LT992466|5|3|717894-717979|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: LT992466_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_6

881872-882022

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTTACAACTAAAGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992466_6

>merge|LT992466|6|881872-882022|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTATGCATCAACTGCATAAGAGCCCCTTACAACTAAAGTTTAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTT

>LT992466|6|4|881872-882022|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTT	GAAAAATAGAGGAACACAGTTGGATGCTATGCATCAAC
TGCATAAGAGCCCCTTACAACTAAAGTT	TAAAAGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTT

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Crispr_ID: LT992466_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_7

937441-937653

Orphan

Consensus_repeat	Method
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992466_7

>merge|LT992466|7|937441-937653|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCAAAGTAACATGGCACCAACACCAAGCTCCCACAACAGCACATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCATAGCACTACATCAAGACGCATCGTGGTACCAGCACATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

>LT992466|7|5|937441-937653|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	AAGTAACATGGCACCAACACCAAGCTCCCACAACAGCA
CATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCA	TAGCACTACATCAAGACGCATCGTGGTACCAGCA
CATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

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Crispr_ID: LT992466_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_8

1309075-1309157

Orphan

Consensus_repeat	Method
GTAAGCTGACTTTTTCGTCAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992466_8

>merge|LT992466|8|1309075-1309157|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTCTGTGTTGGGGCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTTCGTCAGCTTC

>LT992466|8|6|1309075-1309157|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTC	TGTGTTGGGGCCCACCCCAACTTGCACATTATA
GTAAGCTGACTTTTTCGTCAGCTTC

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Crispr_ID: LT992466_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_9

2181906-2181986

Orphan

Consensus_repeat	Method
GGGAGTGGGAGAGAAATGATAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992466_9

>merge|LT992466|9|2181906-2181986|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGAATCACTTATGCTTTATTATGTATTGGTTCTTGGGAGTGGGACAGAAATGATAAAGA

>LT992466|9|7|2181906-2181986|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGA	ATCACTTATGCTTTATTATGTATTGGTTCTT
GGGAGTGGGACAGAAATGATAAAGA

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Crispr_ID: LT992466_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992466_10

2393513-2393621

Orphan

Consensus_repeat	Method
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992466_10

>merge|LT992466|10|2393513-2393621|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTTAAAGCCTCTTGAACTCTAGTGATTAGAGGCTTTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

>LT992466|10|8|2393513-2393621|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	AAAGCCTCTTGAACTCTAGTGATTAGAGGCT
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992466_5	5.1\|717924\|26\|LT992466\|CRISPRCasFinder	717924-717949	26	LT992466.1	1431588-1431613	0	1.0
LT992466_5	5.1\|717924\|26\|LT992466\|CRISPRCasFinder	717924-717949	26	LT992466.1	2186304-2186329	1	0.962
LT992466_4	4.1\|586046\|33\|LT992466\|CRISPRCasFinder	586046-586078	33	LT992466.1	2742753-2742785	2	0.939
LT992466_5	5.1\|717924\|26\|LT992466\|CRISPRCasFinder	717924-717949	26	LT992466.1	926516-926541	2	0.923
LT992466_5	5.1\|717924\|26\|LT992466\|CRISPRCasFinder	717924-717949	26	LT992466.1	1700297-1700322	2	0.923
LT992466_5	5.1\|717924\|26\|LT992466\|CRISPRCasFinder	717924-717949	26	LT992466.1	2137224-2137249	2	0.923
LT992466_5	5.1\|717924\|26\|LT992466\|CRISPRCasFinder	717924-717949	26	LT992466.1	2182159-2182184	2	0.923
LT992466_9	9.1\|2181931\|31\|LT992466\|CRISPRCasFinder	2181931-2181961	31	LT992466.1	2236885-2236915	2	0.935

1. spacer 5.1|717924|26|LT992466|CRISPRCasFinder matches to position: 1431588-1431613, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 5.1|717924|26|LT992466|CRISPRCasFinder matches to position: 2186304-2186329, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctatgttggggccccg	Protospacer
***.**********************

3. spacer 4.1|586046|33|LT992466|CRISPRCasFinder matches to position: 2742753-2742785, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatg	Protospacer
*** ********.********************

4. spacer 5.1|717924|26|LT992466|CRISPRCasFinder matches to position: 926516-926541, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

5. spacer 5.1|717924|26|LT992466|CRISPRCasFinder matches to position: 1700297-1700322, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagtttctgtgttggggccccg	Protospacer
*******.****.*************

6. spacer 5.1|717924|26|LT992466|CRISPRCasFinder matches to position: 2137224-2137249, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccaccagcttctgtgttggggccccg	Protospacer
**.*********.*************

7. spacer 5.1|717924|26|LT992466|CRISPRCasFinder matches to position: 2182159-2182184, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgctactatgttggggccccg	Protospacer
***** *** ****************

8. spacer 9.1|2181931|31|LT992466|CRISPRCasFinder matches to position: 2236885-2236915, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992466_7	7.2\|937573\|34\|LT992466\|CRISPRCasFinder	937573-937606	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992466_7	7.2\|937573\|34\|LT992466\|CRISPRCasFinder	937573-937606	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 7.2|937573|34|LT992466|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

2. spacer 7.2|937573|34|LT992466|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage