CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992467	Staphylococcus aureus isolate 16_LA_309 genome assembly, chromosome: I	11 crisprs	NA	6	4	0	0

Cas Category Instructions

Results visualization

1. LT992467

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CRISPR-Cas detection and classification

Crispr_ID: LT992467_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_1

331143-331225

Orphan

Consensus_repeat	Method
GAAGCTGACGAAAAAGTCAGCTTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_1

>merge|LT992467|1|331143-331225|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAAGTCAGCTTAC

>LT992467|1|1|331143-331225|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTAC	TATAATGTGCAAGTTGGGGTGGGCCCCAACACA
GAAGCTGACGAAAAAGTCAGCTTAC

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Crispr_ID: LT992467_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_2

420837-420930

Orphan

Consensus_repeat	Method
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_2

>merge|LT992467|2|420837-420930|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

>LT992467|2|2|420837-420930|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	AGAATTTCAAAAAAGAAATTCTACAG
GCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

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Crispr_ID: LT992467_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_3

709590-709802

Orphan

Consensus_repeat	Method
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992467_3

>merge|LT992467|3|709590-709802|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATGTGCTGGTACCACGATGCGTCTTGATGTAGTGCTATGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATGTGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTTTGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

>LT992467|3|3|709590-709802|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATG	TGCTGGTACCACGATGCGTCTTGATGTAGTGCTA
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	TGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTT
TGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

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Crispr_ID: LT992467_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_4

766553-766703

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992467_4

>merge|LT992467|4|766553-766703|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTAAGGGGCTCTTATGCAGTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGAGCTTCTTTCTA

>LT992467|4|4|766553-766703|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTAAGGGGCTCTTATGCA	GTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGAGCTTCTTTCTA

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Crispr_ID: LT992467_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_5

933246-933331

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_5

>merge|LT992467|5|933246-933331|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>LT992467|5|5|933246-933331|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

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Crispr_ID: LT992467_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_6

1110788-1110882

Orphan

Consensus_repeat	Method
AGGCTCTTATGCAGTTGGTGCGAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_6

>merge|LT992467|6|1110788-1110882|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAGAGGCTCTTATGCAGTTGTTGCGAAGCAA

>LT992467|6|6|1110788-1110882|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAA	GCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAG
AGGCTCTTATGCAGTTGTTGCGAAGCAA

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Crispr_ID: LT992467_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_7

1138733-1138843

Orphan

Consensus_repeat	Method
GGTACTTCTGGTGTCGGTGGCGTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_7

>merge|LT992467|7|1138733-1138843|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGTTCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTCGGTACTTCTGGTGTCGGTGGTGTTGGT

>LT992467|7|7|1138733-1138843|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGT	TCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTC
GGTACTTCTGGTGTCGGTGGTGTTGGT

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Crispr_ID: LT992467_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_8

1687043-1687242

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of LT992467_8

>merge|LT992467|8|1687043-1687242|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCTGGCGAAAATACAGCTTACAATAATGTGCGAGTTGGCAGGCCTCCAACACAGAGAAATTGGAACAGCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTAGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGGCCCCAACACAGAAGCT

>LT992467|8|8|1687043-1687242|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCT	GGCGAAAATACAGCTTACAATAATG
TGCGAGTTGGCAGGCCTCCAACACAGAGAAA	TTGGAACAGCAATTTCTACAGACAA
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	AGCGAAAAGTCAGCTTACAATAATGT
GCAAGTTGGCGGGGGCCCCAACACAGAAGCT

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Crispr_ID: LT992467_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_9

2058884-2058992

Orphan

Consensus_repeat	Method
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_9

>merge|LT992467|9|2058884-2058992|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAAAGCCTCTAATCACTAGAGTTCAAGAGGCTTTAAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

>LT992467|9|9|2058884-2058992|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	AGCCTCTAATCACTAGAGTTCAAGAGGCTTT
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

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Crispr_ID: LT992467_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_10

2221033-2221115

Orphan

Consensus_repeat	Method
CACCCCAACTCGCATTGCTTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_10

>merge|LT992467|10|2221033-2221115|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAA

>LT992467|10|10|2221033-2221115|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAA	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC
CACCCCAACTCGCATTGCCTGTAGAA

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Crispr_ID: LT992467_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992467_11

2271717-2271797

Orphan

Consensus_repeat	Method
TCTTTATCATTTCTGTCCCACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992467_11

>merge|LT992467|11|2271717-2271797|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCCAAGAACCAATACATAATAAAGCATAAGTGATTCTTTATCATTTCTCTCCCACTCCC

>LT992467|11|11|2271717-2271797|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCC	AAGAACCAATACATAATAAAGCATAAGTGAT
TCTTTATCATTTCTCTCCCACTCCC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992467_2	2.1\|420871\|26\|LT992467\|CRISPRCasFinder	420871-420896	26	LT992467.1	518634-518659	0	1.0
LT992467_5	5.1\|933276\|26\|LT992467\|CRISPRCasFinder	933276-933301	26	LT992467.1	208687-208712	0	1.0
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	518587-518617	0	1.0
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	518697-518727	0	1.0
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	634844-634874	0	1.0
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2358538-2358568	0	1.0
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2397369-2397399	0	1.0
LT992467_5	5.1\|933276\|26\|LT992467\|CRISPRCasFinder	933276-933301	26	LT992467.1	2267374-2267399	1	0.962
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	328680-328710	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	420798-420828	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	886738-886768	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	933164-933194	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	1669113-1669143	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	1669171-1669201	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	1764160-1764190	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2050351-2050381	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2174716-2174746	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2267310-2267340	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2491668-2491698	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2591956-2591986	1	0.968
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2592010-2592040	1	0.968
LT992467_5	5.1\|933276\|26\|LT992467\|CRISPRCasFinder	933276-933301	26	LT992467.1	722034-722059	2	0.923
LT992467_5	5.1\|933276\|26\|LT992467\|CRISPRCasFinder	933276-933301	26	LT992467.1	1066499-1066524	2	0.923
LT992467_5	5.1\|933276\|26\|LT992467\|CRISPRCasFinder	933276-933301	26	LT992467.1	2271519-2271544	2	0.923
LT992467_5	5.1\|933276\|26\|LT992467\|CRISPRCasFinder	933276-933301	26	LT992467.1	2358343-2358368	2	0.923
LT992467_5	5.1\|933276\|26\|LT992467\|CRISPRCasFinder	933276-933301	26	LT992467.1	2796532-2796557	2	0.923
LT992467_8	8.1\|1687074\|25\|LT992467\|CRISPRCasFinder	1687074-1687098	25	LT992467.1	1687243-1687267	2	0.92
LT992467_8	8.2\|1687130\|25\|LT992467\|CRISPRCasFinder	1687130-1687154	25	LT992467.1	721996-722020	2	0.92
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	897486-897516	2	0.935
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	897541-897571	2	0.935
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	1336611-1336641	2	0.935
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2230040-2230070	2	0.935
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2271418-2271448	2	0.935
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2800861-2800891	2	0.935
LT992467_10	10.1\|2221059\|31\|LT992467\|CRISPRCasFinder	2221059-2221089	31	LT992467.1	2846951-2846981	2	0.935
LT992467_11	11.1\|2271742\|31\|LT992467\|CRISPRCasFinder	2271742-2271772	31	LT992467.1	2215456-2215486	2	0.935

1. spacer 2.1|420871|26|LT992467|CRISPRCasFinder matches to position: 518634-518659, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

2. spacer 5.1|933276|26|LT992467|CRISPRCasFinder matches to position: 208687-208712, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

3. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 518587-518617, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

4. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 518697-518727, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

5. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 634844-634874, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

6. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2358538-2358568, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

7. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2397369-2397399, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

8. spacer 5.1|933276|26|LT992467|CRISPRCasFinder matches to position: 2267374-2267399, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctgacgg	Protospacer
**********************.***

9. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 328680-328710, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

10. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 420798-420828, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

11. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 886738-886768, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

12. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 933164-933194, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctgtgttggggccc	Protospacer
********.**********************

13. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 1669113-1669143, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

14. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 1669171-1669201, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

15. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 1764160-1764190, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

16. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2050351-2050381, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttgggcccc	Protospacer
*************************** ***

17. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2174716-2174746, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

18. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2267310-2267340, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

19. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2491668-2491698, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

20. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2591956-2591986, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

21. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2592010-2592040, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

22. spacer 5.1|933276|26|LT992467|CRISPRCasFinder matches to position: 722034-722059, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
*************.*.**********

23. spacer 5.1|933276|26|LT992467|CRISPRCasFinder matches to position: 1066499-1066524, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagtagctggcgg	Protospacer
*************.** *********

24. spacer 5.1|933276|26|LT992467|CRISPRCasFinder matches to position: 2271519-2271544, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagtagcaggcgg	Protospacer
**************** *** *****

25. spacer 5.1|933276|26|LT992467|CRISPRCasFinder matches to position: 2358343-2358368, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggtgg	Protospacer
*************.*********.**

26. spacer 5.1|933276|26|LT992467|CRISPRCasFinder matches to position: 2796532-2796557, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaaactggcgg	Protospacer
*************.****.*******

27. spacer 8.1|1687074|25|LT992467|CRISPRCasFinder matches to position: 1687243-1687267, mismatch: 2, identity: 0.92

ggcgaaaatacagcttacaataatg	CRISPR spacer
ggcgaaaagtcagcttacaataatg	Protospacer
********  ***************

28. spacer 8.2|1687130|25|LT992467|CRISPRCasFinder matches to position: 721996-722020, mismatch: 2, identity: 0.92

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacaccaattcctacagacaa	Protospacer
******** *****.**********

29. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 897486-897516, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

30. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 897541-897571, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

31. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 1336611-1336641, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtattgggggcc	Protospacer
*********************.****** **

32. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2230040-2230070, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcatttcgaaattctctatgttggggccc	Protospacer
**** **************.***********

33. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2271418-2271448, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaatcctctgtgttggggacc	Protospacer
**************.************* **

34. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2800861-2800891, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcggaattctctgtgttggagccc	Protospacer
**********.***************.****

35. spacer 10.1|2221059|31|LT992467|CRISPRCasFinder matches to position: 2846951-2846981, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaaatctctgtgttgaggccc	Protospacer
************* ***********.*****

36. spacer 11.1|2271742|31|LT992467|CRISPRCasFinder matches to position: 2215456-2215486, mismatch: 2, identity: 0.935

aagaaccaatacataataaagcataagtgat	CRISPR spacer
aagaaccaatacataataaatcattagtgat	Protospacer
******************** *** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992467_8	8.1\|1687074\|25\|LT992467\|CRISPRCasFinder	1687074-1687098	25	NC_014792	Enterobacteria phage vB_EcoM-VR7, complete genome	154175-154199	3	0.88
LT992467_2	2.1\|420871\|26\|LT992467\|CRISPRCasFinder	420871-420896	26	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	17379-17404	4	0.846
LT992467_2	2.1\|420871\|26\|LT992467\|CRISPRCasFinder	420871-420896	26	NZ_CP017210	Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence	2023-2048	4	0.846
LT992467_8	8.2\|1687130\|25\|LT992467\|CRISPRCasFinder	1687130-1687154	25	MW117966	Synechococcus phage S-H9-1, complete genome	42366-42390	4	0.84
LT992467_2	2.1\|420871\|26\|LT992467\|CRISPRCasFinder	420871-420896	26	NC_008443	Borrelia burgdorferi strain Ip21 plasmid, complete sequence	5652-5677	5	0.808
LT992467_2	2.1\|420871\|26\|LT992467\|CRISPRCasFinder	420871-420896	26	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	3460-3485	5	0.808
LT992467_2	2.1\|420871\|26\|LT992467\|CRISPRCasFinder	420871-420896	26	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	13739-13764	5	0.808
LT992467_8	8.2\|1687130\|25\|LT992467\|CRISPRCasFinder	1687130-1687154	25	NZ_CP038259	Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence	11151-11175	5	0.8
LT992467_2	2.1\|420871\|26\|LT992467\|CRISPRCasFinder	420871-420896	26	MK448662	Streptococcus satellite phage Javan97, complete genome	6198-6223	6	0.769
LT992467_8	8.2\|1687130\|25\|LT992467\|CRISPRCasFinder	1687130-1687154	25	NZ_CP047617	Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence	79395-79419	6	0.76
LT992467_3	3.1\|709637\|34\|LT992467\|CRISPRCasFinder	709637-709670	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992467_3	3.1\|709637\|34\|LT992467\|CRISPRCasFinder	709637-709670	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 8.1|1687074|25|LT992467|CRISPRCasFinder matches to NC_014792 (Enterobacteria phage vB_EcoM-VR7, complete genome) position: , mismatch: 3, identity: 0.88

ggcgaaaatacagcttacaataatg	CRISPR spacer
gacgaaaatacatattacaataatg	Protospacer
*.**********  ***********

2. spacer 2.1|420871|26|LT992467|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaataaaatctattg	Protospacer
************** *** ****. *

3. spacer 2.1|420871|26|LT992467|CRISPRCasFinder matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
acaatttcaaaaaagaaatattacac	Protospacer
* ***************** .****

4. spacer 8.2|1687130|25|LT992467|CRISPRCasFinder matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 4, identity: 0.84

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacagcaatttctactggtat	Protospacer
******************* *..*

5. spacer 2.1|420871|26|LT992467|CRISPRCasFinder matches to NC_008443 (Borrelia burgdorferi strain Ip21 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
ccaatttcaaaaaagaaattttccac	Protospacer
  ******************.* **

6. spacer 2.1|420871|26|LT992467|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

7. spacer 2.1|420871|26|LT992467|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

8. spacer 8.2|1687130|25|LT992467|CRISPRCasFinder matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 5, identity: 0.8

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctccagaggt	Protospacer
.**************** **** .

9. spacer 2.1|420871|26|LT992467|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 6, identity: 0.769

agaatttcaaaaaagaaattctacag	CRISPR spacer
gctttttcaaaaaagaaattctagac	Protospacer
.   ******************* *

10. spacer 8.2|1687130|25|LT992467|CRISPRCasFinder matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 6, identity: 0.76

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctacattatc	Protospacer
.*******************

11. spacer 3.1|709637|34|LT992467|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

12. spacer 3.1|709637|34|LT992467|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage