CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992469	Staphylococcus aureus isolate 15_LA_305 genome assembly, chromosome: I	10 crisprs	NA	3	1	0	0

Cas Category Instructions

Results visualization

1. LT992469

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LT992469_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_1

75629-75779

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTTACAACTAAAGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992469_1

>merge|LT992469|1|75629-75779|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTATGCATCAACTGCATAAGAGCCCCTTACAACTAAAGTTTAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTT

>LT992469|1|1|75629-75779|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTT	GAAAAATAGAGGAACACAGTTGGATGCTATGCATCAAC
TGCATAAGAGCCCCTTACAACTAAAGTT	TAAAAGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_2

131198-131410

Orphan

Consensus_repeat	Method
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992469_2

>merge|LT992469|2|131198-131410|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCAAAGTAACATGGCACCAACACCAAGCTCCCACAACAGCACATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCATAGCACTACATCAAGACGCATCGTGGTACCAGCACATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

>LT992469|2|2|131198-131410|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	AAGTAACATGGCACCAACACCAAGCTCCCACAACAGCA
CATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCA	TAGCACTACATCAAGACGCATCGTGGTACCAGCA
CATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_3

491871-491953

Orphan

Consensus_repeat	Method
GTAAGCTGACTTTTTCGTCAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992469_3

>merge|LT992469|3|491871-491953|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTCTGTGTTGGGGCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTTCGTCAGCTTC

>LT992469|3|3|491871-491953|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTC	TGTGTTGGGGCCCACCCCAACTTGCACATTATA
GTAAGCTGACTTTTTCGTCAGCTTC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_4

1417438-1417518

Orphan

Consensus_repeat	Method
GGGAGTGGGAGAGAAATGATAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992469_4

>merge|LT992469|4|1417438-1417518|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGAATCACTTATGCTTTATTATGTATTGGTTCTTGGGAGTGGGACAGAAATGATAAAGA

>LT992469|4|4|1417438-1417518|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGA	ATCACTTATGCTTTATTATGTATTGGTTCTT
GGGAGTGGGACAGAAATGATAAAGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_5

1629048-1629156

Orphan

Consensus_repeat	Method
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992469_5

>merge|LT992469|5|1629048-1629156|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTTAAAGCCTCTTGAACTCTAGTGATTAGAGGCTTTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

>LT992469|5|5|1629048-1629156|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	AAAGCCTCTTGAACTCTAGTGATTAGAGGCT
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_6

2535795-2535928

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992469_6

>merge|LT992469|6|2535795-2535928|PILER-CR
TATTGAAGAAGATACAAACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992469|6|1|2535795-2535928|PILER-CR
TATTGAAGAAGATACAA	ACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_7

2539339-2539472

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992469_7

>merge|LT992469|7|2539339-2539472|PILER-CR
TATTGAAGAAGATACAAACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992469|7|2|2539339-2539472|PILER-CR
TATTGAAGAAGATACAA	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_8

2563936-2564030

Orphan

Consensus_repeat	Method
TTGCTTCGCAACAACTGCATAAGAGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992469_8

>merge|LT992469|8|2563936-2564030|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCTCTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCACCAACTGCATAAGAGCCT

>LT992469|8|6|2563936-2564030|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCT	CTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGC
TTGCTTCGCACCAACTGCATAAGAGCCT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_9

2608284-2608362

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992469_9

>merge|LT992469|9|2608284-2608362|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>LT992469|9|7|2608284-2608362|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992469_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992469_10

2740224-2740309

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992469_10

>merge|LT992469|10|2740224-2740309|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LT992469|10|8|2740224-2740309|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992469_10	10.1\|2740254\|26\|LT992469\|CRISPRCasFinder	2740254-2740279	26	LT992469.1	619599-619624	0	1.0
LT992469_10	10.1\|2740254\|26\|LT992469\|CRISPRCasFinder	2740254-2740279	26	LT992469.1	1421836-1421861	1	0.962
LT992469_4	4.1\|1417463\|31\|LT992469\|CRISPRCasFinder	1417463-1417493	31	LT992469.1	1472416-1472446	2	0.935
LT992469_9	9.1\|2608307\|33\|LT992469\|CRISPRCasFinder	2608307-2608339	33	LT992469.1	1991119-1991151	2	0.939
LT992469_10	10.1\|2740254\|26\|LT992469\|CRISPRCasFinder	2740254-2740279	26	LT992469.1	120273-120298	2	0.923
LT992469_10	10.1\|2740254\|26\|LT992469\|CRISPRCasFinder	2740254-2740279	26	LT992469.1	935829-935854	2	0.923
LT992469_10	10.1\|2740254\|26\|LT992469\|CRISPRCasFinder	2740254-2740279	26	LT992469.1	1372756-1372781	2	0.923
LT992469_10	10.1\|2740254\|26\|LT992469\|CRISPRCasFinder	2740254-2740279	26	LT992469.1	1417691-1417716	2	0.923

1. spacer 10.1|2740254|26|LT992469|CRISPRCasFinder matches to position: 619599-619624, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 10.1|2740254|26|LT992469|CRISPRCasFinder matches to position: 1421836-1421861, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctatgttggggccccg	Protospacer
***.**********************

3. spacer 4.1|1417463|31|LT992469|CRISPRCasFinder matches to position: 1472416-1472446, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

4. spacer 9.1|2608307|33|LT992469|CRISPRCasFinder matches to position: 1991119-1991151, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatg	Protospacer
*** ********.********************

5. spacer 10.1|2740254|26|LT992469|CRISPRCasFinder matches to position: 120273-120298, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

6. spacer 10.1|2740254|26|LT992469|CRISPRCasFinder matches to position: 935829-935854, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagtttctgtgttggggccccg	Protospacer
*******.****.*************

7. spacer 10.1|2740254|26|LT992469|CRISPRCasFinder matches to position: 1372756-1372781, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccaccagcttctgtgttggggccccg	Protospacer
**.*********.*************

8. spacer 10.1|2740254|26|LT992469|CRISPRCasFinder matches to position: 1417691-1417716, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgctactatgttggggccccg	Protospacer
***** *** ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992469_2	2.2\|131330\|34\|LT992469\|CRISPRCasFinder	131330-131363	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992469_2	2.2\|131330\|34\|LT992469\|CRISPRCasFinder	131330-131363	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 2.2|131330|34|LT992469|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

2. spacer 2.2|131330|34|LT992469|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage