CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992471	Staphylococcus aureus isolate 17_LA_343 genome assembly, chromosome: I	12 crisprs	NA	6	4	0	0

Cas Category Instructions

Results visualization

1. LT992471

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CRISPR-Cas detection and classification

Crispr_ID: LT992471_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_1

336240-336439

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of LT992471_1

>merge|LT992471|1|336240-336439|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCTGGCGAAAATACAGCTTACAATAATGTGCGAGTTGGCAGGCCTCCAACACAGAGAAATTGGAACAGCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTAGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGGCCCCAACACAGAAGCT

>LT992471|1|1|336240-336439|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCT	GGCGAAAATACAGCTTACAATAATG
TGCGAGTTGGCAGGCCTCCAACACAGAGAAA	TTGGAACAGCAATTTCTACAGACAA
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	AGCGAAAAGTCAGCTTACAATAATGT
GCAAGTTGGCGGGGGCCCCAACACAGAAGCT

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Crispr_ID: LT992471_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_2

753569-753677

Orphan

Consensus_repeat	Method
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_2

>merge|LT992471|2|753569-753677|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAAAGCCTCTAATCACTAGAGTTCAAGAGGCTTTAAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

>LT992471|2|2|753569-753677|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	AGCCTCTAATCACTAGAGTTCAAGAGGCTTT
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

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Crispr_ID: LT992471_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_3

915579-915661

Orphan

Consensus_repeat	Method
CACCCCAACTCGCATTGCTTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_3

>merge|LT992471|3|915579-915661|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAA

>LT992471|3|3|915579-915661|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAA	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC
CACCCCAACTCGCATTGCCTGTAGAA

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Crispr_ID: LT992471_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_4

1008579-1008659

Orphan

Consensus_repeat	Method
TCTTTATCATTTCTGTCCCACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_4

>merge|LT992471|4|1008579-1008659|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCCAAGAACCAATACATAATAAAGCATAAGTGATTCTTTATCATTTCTCTCCCACTCCC

>LT992471|4|4|1008579-1008659|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCC	AAGAACCAATACATAATAAAGCATAAGTGAT
TCTTTATCATTTCTCTCCCACTCCC

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Crispr_ID: LT992471_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_5

1896370-1896454

Orphan

Consensus_repeat	Method
AGAAGCTGACGGAAAAGTCAGCTTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_5

>merge|LT992471|5|1896370-1896454|CRISPRCasFinder
AGAAGCTGACGGAAAAGTCAGCTTACATTAATGTGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAAGTCAGCTTACA

>LT992471|5|5|1896370-1896454|CRISPRCasFinder
AGAAGCTGACGGAAAAGTCAGCTTACA	TTAATGTGCAAGTTGGGGTGGGCCCCAACAC
AGAAGCTGACGAAAAAGTCAGCTTACA

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Crispr_ID: LT992471_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_6

1984730-1984823

Orphan

Consensus_repeat	Method
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_6

>merge|LT992471|6|1984730-1984823|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

>LT992471|6|6|1984730-1984823|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	AGAATTTCAAAAAAGAAATTCTACAG
GCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

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Crispr_ID: LT992471_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_7

2274873-2275085

Orphan

Consensus_repeat	Method
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992471_7

>merge|LT992471|7|2274873-2275085|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATGTGCTGGTACCACGATGCGTCTTGATGTAGTGCTATGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATGTGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTTTGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

>LT992471|7|7|2274873-2275085|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATG	TGCTGGTACCACGATGCGTCTTGATGTAGTGCTA
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	TGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTT
TGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

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Crispr_ID: LT992471_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_8

2330504-2330654

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992471_8

>merge|LT992471|8|2330504-2330654|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTAAGGGGCTCTTATGCAGTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGAGCTTCTTTCTA

>LT992471|8|8|2330504-2330654|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTAAGGGGCTCTTATGCA	GTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGAGCTTCTTTCTA

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Crispr_ID: LT992471_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_9

2494545-2494630

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_9

>merge|LT992471|9|2494545-2494630|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>LT992471|9|9|2494545-2494630|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

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Crispr_ID: LT992471_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_10

2610961-2611055

Orphan

Consensus_repeat	Method
TTCTTCAAATTTATTTGTTAGAAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_10

>merge|LT992471|10|2610961-2611055|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGGCTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTTCGTCTTCTTCAAATTTATTTGTTAGAAAGGC

>LT992471|10|10|2610961-2611055|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGGC	TTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTTCGTC
TTCTTCAAATTTATTTGTTAGAAAGGC

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Crispr_ID: LT992471_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_11

2670685-2670779

Orphan

Consensus_repeat	Method
AGGCTCTTATGCAGTTGGTGCGAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_11

>merge|LT992471|11|2670685-2670779|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAGAGGCTCTTATGCAGTTGTTGCGAAGCAA

>LT992471|11|11|2670685-2670779|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAA	GCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAG
AGGCTCTTATGCAGTTGTTGCGAAGCAA

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Crispr_ID: LT992471_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992471_12

2698629-2698739

Orphan

Consensus_repeat	Method
GGTACTTCTGGTGTCGGTGGCGTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992471_12

>merge|LT992471|12|2698629-2698739|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGTTCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTCGGTACTTCTGGTGTCGGTGGTGTTGGT

>LT992471|12|12|2698629-2698739|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGT	TCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTC
GGTACTTCTGGTGTCGGTGGTGTTGGT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1053511-1053541	0	1.0
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1092342-1092372	0	1.0
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2085146-2085176	0	1.0
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2085256-2085286	0	1.0
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2200151-2200181	0	1.0
LT992471_6	6.1\|1984764\|26\|LT992471\|CRISPRCasFinder	1984764-1984789	26	LT992471.1	2085193-2085218	0	1.0
LT992471_9	9.1\|2494575\|26\|LT992471\|CRISPRCasFinder	2494575-2494600	26	LT992471.1	1769876-1769901	0	1.0
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	318310-318340	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	318368-318398	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	459123-459153	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	745036-745066	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	869262-869292	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1004172-1004202	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1186641-1186671	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1286929-1286959	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1286983-1287013	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1894025-1894055	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1984691-1984721	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2449370-2449400	1	0.968
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2494463-2494493	1	0.968
LT992471_9	9.1\|2494575\|26\|LT992471\|CRISPRCasFinder	2494575-2494600	26	LT992471.1	1004236-1004261	1	0.962
LT992471_1	1.1\|336271\|25\|LT992471\|CRISPRCasFinder	336271-336295	25	LT992471.1	336440-336464	2	0.92
LT992471_1	1.2\|336327\|25\|LT992471\|CRISPRCasFinder	336327-336351	25	LT992471.1	2285947-2285971	2	0.92
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	924586-924616	2	0.935
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1008280-1008310	2	0.935
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1498561-1498591	2	0.935
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	1547315-1547345	2	0.935
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2460118-2460148	2	0.935
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2460173-2460203	2	0.935
LT992471_3	3.1\|915605\|31\|LT992471\|CRISPRCasFinder	915605-915635	31	LT992471.1	2895545-2895575	2	0.935
LT992471_4	4.1\|1008604\|31\|LT992471\|CRISPRCasFinder	1008604-1008634	31	LT992471.1	910002-910032	2	0.935
LT992471_9	9.1\|2494575\|26\|LT992471\|CRISPRCasFinder	2494575-2494600	26	LT992471.1	1008381-1008406	2	0.923
LT992471_9	9.1\|2494575\|26\|LT992471\|CRISPRCasFinder	2494575-2494600	26	LT992471.1	1053316-1053341	2	0.923
LT992471_9	9.1\|2494575\|26\|LT992471\|CRISPRCasFinder	2494575-2494600	26	LT992471.1	1494232-1494257	2	0.923
LT992471_9	9.1\|2494575\|26\|LT992471\|CRISPRCasFinder	2494575-2494600	26	LT992471.1	2285985-2286010	2	0.923
LT992471_9	9.1\|2494575\|26\|LT992471\|CRISPRCasFinder	2494575-2494600	26	LT992471.1	2626397-2626422	2	0.923

1. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1053511-1053541, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

2. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1092342-1092372, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

3. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2085146-2085176, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

4. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2085256-2085286, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

5. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2200151-2200181, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

6. spacer 6.1|1984764|26|LT992471|CRISPRCasFinder matches to position: 2085193-2085218, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

7. spacer 9.1|2494575|26|LT992471|CRISPRCasFinder matches to position: 1769876-1769901, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

8. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 318310-318340, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

9. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 318368-318398, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

10. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 459123-459153, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

11. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 745036-745066, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttgggcccc	Protospacer
*************************** ***

12. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 869262-869292, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

13. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1004172-1004202, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

14. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1186641-1186671, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

15. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1286929-1286959, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

16. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1286983-1287013, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

17. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1894025-1894055, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

18. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1984691-1984721, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

19. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2449370-2449400, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

20. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2494463-2494493, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctgtgttggggccc	Protospacer
********.**********************

21. spacer 9.1|2494575|26|LT992471|CRISPRCasFinder matches to position: 1004236-1004261, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctgacgg	Protospacer
**********************.***

22. spacer 1.1|336271|25|LT992471|CRISPRCasFinder matches to position: 336440-336464, mismatch: 2, identity: 0.92

ggcgaaaatacagcttacaataatg	CRISPR spacer
ggcgaaaagtcagcttacaataatg	Protospacer
********  ***************

23. spacer 1.2|336327|25|LT992471|CRISPRCasFinder matches to position: 2285947-2285971, mismatch: 2, identity: 0.92

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacaccaattcctacagacaa	Protospacer
******** *****.**********

24. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 924586-924616, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcatttcgaaattctctatgttggggccc	Protospacer
**** **************.***********

25. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1008280-1008310, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaatcctctgtgttggggacc	Protospacer
**************.************* **

26. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1498561-1498591, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcggaattctctgtgttggagccc	Protospacer
**********.***************.****

27. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 1547315-1547345, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaaatctctgtgttgaggccc	Protospacer
************* ***********.*****

28. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2460118-2460148, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

29. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2460173-2460203, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

30. spacer 3.1|915605|31|LT992471|CRISPRCasFinder matches to position: 2895545-2895575, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtattgggggcc	Protospacer
*********************.****** **

31. spacer 4.1|1008604|31|LT992471|CRISPRCasFinder matches to position: 910002-910032, mismatch: 2, identity: 0.935

aagaaccaatacataataaagcataagtgat	CRISPR spacer
aagaaccaatacataataaatcattagtgat	Protospacer
******************** *** ******

32. spacer 9.1|2494575|26|LT992471|CRISPRCasFinder matches to position: 1008381-1008406, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagtagcaggcgg	Protospacer
**************** *** *****

33. spacer 9.1|2494575|26|LT992471|CRISPRCasFinder matches to position: 1053316-1053341, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggtgg	Protospacer
*************.*********.**

34. spacer 9.1|2494575|26|LT992471|CRISPRCasFinder matches to position: 1494232-1494257, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaaactggcgg	Protospacer
*************.****.*******

35. spacer 9.1|2494575|26|LT992471|CRISPRCasFinder matches to position: 2285985-2286010, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
*************.*.**********

36. spacer 9.1|2494575|26|LT992471|CRISPRCasFinder matches to position: 2626397-2626422, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagtagctggcgg	Protospacer
*************.** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992471_1	1.1\|336271\|25\|LT992471\|CRISPRCasFinder	336271-336295	25	NC_014792	Enterobacteria phage vB_EcoM-VR7, complete genome	154175-154199	3	0.88
LT992471_1	1.2\|336327\|25\|LT992471\|CRISPRCasFinder	336327-336351	25	MW117966	Synechococcus phage S-H9-1, complete genome	42366-42390	4	0.84
LT992471_6	6.1\|1984764\|26\|LT992471\|CRISPRCasFinder	1984764-1984789	26	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	17379-17404	4	0.846
LT992471_6	6.1\|1984764\|26\|LT992471\|CRISPRCasFinder	1984764-1984789	26	NZ_CP017210	Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence	2023-2048	4	0.846
LT992471_1	1.2\|336327\|25\|LT992471\|CRISPRCasFinder	336327-336351	25	NZ_CP038259	Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence	11151-11175	5	0.8
LT992471_6	6.1\|1984764\|26\|LT992471\|CRISPRCasFinder	1984764-1984789	26	NC_008443	Borrelia burgdorferi strain Ip21 plasmid, complete sequence	5652-5677	5	0.808
LT992471_6	6.1\|1984764\|26\|LT992471\|CRISPRCasFinder	1984764-1984789	26	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	3460-3485	5	0.808
LT992471_6	6.1\|1984764\|26\|LT992471\|CRISPRCasFinder	1984764-1984789	26	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	13739-13764	5	0.808
LT992471_1	1.2\|336327\|25\|LT992471\|CRISPRCasFinder	336327-336351	25	NZ_CP047617	Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence	79395-79419	6	0.76
LT992471_6	6.1\|1984764\|26\|LT992471\|CRISPRCasFinder	1984764-1984789	26	MK448662	Streptococcus satellite phage Javan97, complete genome	6198-6223	6	0.769
LT992471_7	7.1\|2274920\|34\|LT992471\|CRISPRCasFinder	2274920-2274953	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992471_7	7.1\|2274920\|34\|LT992471\|CRISPRCasFinder	2274920-2274953	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 1.1|336271|25|LT992471|CRISPRCasFinder matches to NC_014792 (Enterobacteria phage vB_EcoM-VR7, complete genome) position: , mismatch: 3, identity: 0.88

ggcgaaaatacagcttacaataatg	CRISPR spacer
gacgaaaatacatattacaataatg	Protospacer
*.**********  ***********

2. spacer 1.2|336327|25|LT992471|CRISPRCasFinder matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 4, identity: 0.84

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacagcaatttctactggtat	Protospacer
******************* *..*

3. spacer 6.1|1984764|26|LT992471|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaataaaatctattg	Protospacer
************** *** ****. *

4. spacer 6.1|1984764|26|LT992471|CRISPRCasFinder matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
acaatttcaaaaaagaaatattacac	Protospacer
* ***************** .****

5. spacer 1.2|336327|25|LT992471|CRISPRCasFinder matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 5, identity: 0.8

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctccagaggt	Protospacer
.**************** **** .

6. spacer 6.1|1984764|26|LT992471|CRISPRCasFinder matches to NC_008443 (Borrelia burgdorferi strain Ip21 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
ccaatttcaaaaaagaaattttccac	Protospacer
  ******************.* **

7. spacer 6.1|1984764|26|LT992471|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

8. spacer 6.1|1984764|26|LT992471|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

9. spacer 1.2|336327|25|LT992471|CRISPRCasFinder matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 6, identity: 0.76

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctacattatc	Protospacer
.*******************

10. spacer 6.1|1984764|26|LT992471|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 6, identity: 0.769

agaatttcaaaaaagaaattctacag	CRISPR spacer
gctttttcaaaaaagaaattctagac	Protospacer
.   ******************* *

11. spacer 7.1|2274920|34|LT992471|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

12. spacer 7.1|2274920|34|LT992471|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage