CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992474	Staphylococcus aureus isolate 19_LA_388 genome assembly, chromosome: I	10 crisprs	NA	5	4	0	0

Cas Category Instructions

Results visualization

1. LT992474

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LT992474_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_1

317293-317387

Orphan

Consensus_repeat	Method
AGGCTCTTATGCAGTTGGTGCGAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992474_1

>merge|LT992474|1|317293-317387|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAGAGGCTCTTATGCAGTTGTTGCGAAGCAA

>LT992474|1|1|317293-317387|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAA	GCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAG
AGGCTCTTATGCAGTTGTTGCGAAGCAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_2

345238-345348

Orphan

Consensus_repeat	Method
GGTACTTCTGGTGTCGGTGGCGTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992474_2

>merge|LT992474|2|345238-345348|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGTTCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTCGGTACTTCTGGTGTCGGTGGTGTTGGT

>LT992474|2|2|345238-345348|CRISPRCasFinder
GGTACTTCTGGTGTCGGTGGCGTTGGT	TCGCCTGGCTCACTCGGCACTTCTGGTGTCGGTGGTGTTGGTGTTTCCGGCTCACTC
GGTACTTCTGGTGTCGGTGGTGTTGGT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_3

900755-900954

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of LT992474_3

>merge|LT992474|3|900755-900954|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCTGGCGAAAATACAGCTTACAATAATGTGCGAGTTGGCAGGCCTCCAACACAGAGAAATTGGAACAGCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTAGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGGCCCCAACACAGAAGCT

>LT992474|3|3|900755-900954|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCT	GGCGAAAATACAGCTTACAATAATG
TGCGAGTTGGCAGGCCTCCAACACAGAGAAA	TTGGAACAGCAATTTCTACAGACAA
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	AGCGAAAAGTCAGCTTACAATAATGT
GCAAGTTGGCGGGGGCCCCAACACAGAAGCT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_4

1300262-1300370

Orphan

Consensus_repeat	Method
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992474_4

>merge|LT992474|4|1300262-1300370|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAAAGCCTCTAATCACTAGAGTTCAAGAGGCTTTAAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

>LT992474|4|4|1300262-1300370|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	AGCCTCTAATCACTAGAGTTCAAGAGGCTTT
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_5

1462547-1462629

Orphan

Consensus_repeat	Method
CACCCCAACTCGCATTGCTTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992474_5

>merge|LT992474|5|1462547-1462629|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAA

>LT992474|5|5|1462547-1462629|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAA	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC
CACCCCAACTCGCATTGCCTGTAGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_6

1511899-1511979

Orphan

Consensus_repeat	Method
TCTTTATCATTTCTGTCCCACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992474_6

>merge|LT992474|6|1511899-1511979|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCCAAGAACCAATACATAATAAAGCATAAGTGATTCTTTATCATTTCTCTCCCACTCCC

>LT992474|6|6|1511899-1511979|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCC	AAGAACCAATACATAATAAAGCATAAGTGAT
TCTTTATCATTTCTCTCCCACTCCC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_7

2396179-2396261

Orphan

Consensus_repeat	Method
GAAGCTGACGAAAAAGTCAGCTTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992474_7

>merge|LT992474|7|2396179-2396261|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAAGTCAGCTTAC

>LT992474|7|7|2396179-2396261|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTAC	TATAATGTGCAAGTTGGGGTGGGCCCCAACACA
GAAGCTGACGAAAAAGTCAGCTTAC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_8

2484533-2484626

Orphan

Consensus_repeat	Method
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992474_8

>merge|LT992474|8|2484533-2484626|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

>LT992474|8|8|2484533-2484626|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	AGAATTTCAAAAAAGAAATTCTACAG
GCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_9

2767535-2767747

Orphan

Consensus_repeat	Method
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992474_9

>merge|LT992474|9|2767535-2767747|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATGTGCTGGTACCACGATGCGTCTTGATGTAGTGCTATGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATGTGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTTTGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

>LT992474|9|9|2767535-2767747|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATG	TGCTGGTACCACGATGCGTCTTGATGTAGTGCTA
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	TGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTT
TGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LT992474_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992474_10

2823166-2823316

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992474_10

>merge|LT992474|10|2823166-2823316|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTAAGGGGCTCTTATGCAGTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGAGCTTCTTTCTA

>LT992474|10|10|2823166-2823316|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTAAGGGGCTCTTATGCA	GTTGATGCATAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGAGCTTCTTTCTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1556831-1556861	0	1.0
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1595662-1595692	0	1.0
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	2582282-2582312	0	1.0
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	2582392-2582422	0	1.0
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	2692788-2692818	0	1.0
LT992474_8	8.1\|2484567\|26\|LT992474\|CRISPRCasFinder	2484567-2484592	26	LT992474.1	2582329-2582354	0	1.0
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	96023-96053	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	141058-141088	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	882767-882797	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	882825-882855	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	882883-882913	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1022447-1022477	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1291729-1291759	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1416230-1416260	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1507492-1507522	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1688628-1688658	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1788926-1788956	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1788980-1789010	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	2393716-2393746	1	0.968
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	2484494-2484524	1	0.968
LT992474_3	3.1\|900786\|25\|LT992474\|CRISPRCasFinder	900786-900810	25	LT992474.1	900955-900979	2	0.92
LT992474_3	3.2\|900842\|25\|LT992474\|CRISPRCasFinder	900842-900866	25	LT992474.1	2778609-2778633	2	0.92
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	106771-106801	2	0.935
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	543160-543190	2	0.935
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1471554-1471584	2	0.935
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1511600-1511630	2	0.935
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	1997901-1997931	2	0.935
LT992474_5	5.1\|1462573\|31\|LT992474\|CRISPRCasFinder	1462573-1462603	31	LT992474.1	2043991-2044021	2	0.935
LT992474_6	6.1\|1511924\|31\|LT992474\|CRISPRCasFinder	1511924-1511954	31	LT992474.1	1456970-1457000	2	0.935

1. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1556831-1556861, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

2. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1595662-1595692, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

3. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 2582282-2582312, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

4. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 2582392-2582422, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

5. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 2692788-2692818, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

6. spacer 8.1|2484567|26|LT992474|CRISPRCasFinder matches to position: 2582329-2582354, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

7. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 96023-96053, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

8. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 141058-141088, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctgtgttggggccc	Protospacer
********.**********************

9. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 882767-882797, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

10. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 882825-882855, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

11. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 882883-882913, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

12. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1022447-1022477, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

13. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1291729-1291759, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttgggcccc	Protospacer
*************************** ***

14. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1416230-1416260, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

15. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1507492-1507522, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

16. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1688628-1688658, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

17. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1788926-1788956, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

18. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1788980-1789010, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

19. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 2393716-2393746, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

20. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 2484494-2484524, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

21. spacer 3.1|900786|25|LT992474|CRISPRCasFinder matches to position: 900955-900979, mismatch: 2, identity: 0.92

ggcgaaaatacagcttacaataatg	CRISPR spacer
ggcgaaaagtcagcttacaataatg	Protospacer
********  ***************

22. spacer 3.2|900842|25|LT992474|CRISPRCasFinder matches to position: 2778609-2778633, mismatch: 2, identity: 0.92

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacaccaattcctacagacaa	Protospacer
******** *****.**********

23. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 106771-106801, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

24. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 543160-543190, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtattgggggcc	Protospacer
*********************.****** **

25. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1471554-1471584, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcatttcgaaattctctatgttggggccc	Protospacer
**** **************.***********

26. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1511600-1511630, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaatcctctgtgttggggacc	Protospacer
**************.************* **

27. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 1997901-1997931, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcggaattctctgtgttggagccc	Protospacer
**********.***************.****

28. spacer 5.1|1462573|31|LT992474|CRISPRCasFinder matches to position: 2043991-2044021, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaaatctctgtgttgaggccc	Protospacer
************* ***********.*****

29. spacer 6.1|1511924|31|LT992474|CRISPRCasFinder matches to position: 1456970-1457000, mismatch: 2, identity: 0.935

aagaaccaatacataataaagcataagtgat	CRISPR spacer
aagaaccaatacataataaatcattagtgat	Protospacer
******************** *** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992474_3	3.1\|900786\|25\|LT992474\|CRISPRCasFinder	900786-900810	25	NC_014792	Enterobacteria phage vB_EcoM-VR7, complete genome	154175-154199	3	0.88
LT992474_3	3.2\|900842\|25\|LT992474\|CRISPRCasFinder	900842-900866	25	MW117966	Synechococcus phage S-H9-1, complete genome	42366-42390	4	0.84
LT992474_8	8.1\|2484567\|26\|LT992474\|CRISPRCasFinder	2484567-2484592	26	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	17379-17404	4	0.846
LT992474_8	8.1\|2484567\|26\|LT992474\|CRISPRCasFinder	2484567-2484592	26	NZ_CP017210	Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence	2023-2048	4	0.846
LT992474_3	3.2\|900842\|25\|LT992474\|CRISPRCasFinder	900842-900866	25	NZ_CP038259	Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence	11151-11175	5	0.8
LT992474_8	8.1\|2484567\|26\|LT992474\|CRISPRCasFinder	2484567-2484592	26	NC_008443	Borrelia burgdorferi strain Ip21 plasmid, complete sequence	5652-5677	5	0.808
LT992474_8	8.1\|2484567\|26\|LT992474\|CRISPRCasFinder	2484567-2484592	26	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	3460-3485	5	0.808
LT992474_8	8.1\|2484567\|26\|LT992474\|CRISPRCasFinder	2484567-2484592	26	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	13739-13764	5	0.808
LT992474_3	3.2\|900842\|25\|LT992474\|CRISPRCasFinder	900842-900866	25	NZ_CP047617	Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence	79395-79419	6	0.76
LT992474_8	8.1\|2484567\|26\|LT992474\|CRISPRCasFinder	2484567-2484592	26	MK448662	Streptococcus satellite phage Javan97, complete genome	6198-6223	6	0.769
LT992474_9	9.1\|2767582\|34\|LT992474\|CRISPRCasFinder	2767582-2767615	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992474_9	9.1\|2767582\|34\|LT992474\|CRISPRCasFinder	2767582-2767615	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 3.1|900786|25|LT992474|CRISPRCasFinder matches to NC_014792 (Enterobacteria phage vB_EcoM-VR7, complete genome) position: , mismatch: 3, identity: 0.88

ggcgaaaatacagcttacaataatg	CRISPR spacer
gacgaaaatacatattacaataatg	Protospacer
*.**********  ***********

2. spacer 3.2|900842|25|LT992474|CRISPRCasFinder matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 4, identity: 0.84

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacagcaatttctactggtat	Protospacer
******************* *..*

3. spacer 8.1|2484567|26|LT992474|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaataaaatctattg	Protospacer
************** *** ****. *

4. spacer 8.1|2484567|26|LT992474|CRISPRCasFinder matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
acaatttcaaaaaagaaatattacac	Protospacer
* ***************** .****

5. spacer 3.2|900842|25|LT992474|CRISPRCasFinder matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 5, identity: 0.8

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctccagaggt	Protospacer
.**************** **** .

6. spacer 8.1|2484567|26|LT992474|CRISPRCasFinder matches to NC_008443 (Borrelia burgdorferi strain Ip21 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
ccaatttcaaaaaagaaattttccac	Protospacer
  ******************.* **

7. spacer 8.1|2484567|26|LT992474|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

8. spacer 8.1|2484567|26|LT992474|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

9. spacer 3.2|900842|25|LT992474|CRISPRCasFinder matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 6, identity: 0.76

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctacattatc	Protospacer
.*******************

10. spacer 8.1|2484567|26|LT992474|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 6, identity: 0.769

agaatttcaaaaaagaaattctacag	CRISPR spacer
gctttttcaaaaaagaaattctagac	Protospacer
.   ******************* *

11. spacer 9.1|2767582|34|LT992474|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

12. spacer 9.1|2767582|34|LT992474|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage