CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT992477	Staphylococcus aureus isolate 22_LA_562 genome assembly, chromosome: I	11 crisprs	NA	3	1	0	0

Cas Category Instructions

Results visualization

1. LT992477

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CRISPR-Cas detection and classification

Crispr_ID: LT992477_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_1

787062-787142

Orphan

Consensus_repeat	Method
GGGAGTGGGAGAGAAATGATAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992477_1

>merge|LT992477|1|787062-787142|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGAATCACTTATGCTTTATTATGTATTGGTTCTTGGGAGTGGGACAGAAATGATAAAGA

>LT992477|1|1|787062-787142|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGA	ATCACTTATGCTTTATTATGTATTGGTTCTT
GGGAGTGGGACAGAAATGATAAAGA

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Crispr_ID: LT992477_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_2

1001079-1001187

Orphan

Consensus_repeat	Method
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992477_2

>merge|LT992477|2|1001079-1001187|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTTAAAGCCTCTTGAACTCTAGTGATTAGAGGCTTTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

>LT992477|2|2|1001079-1001187|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	AAAGCCTCTTGAACTCTAGTGATTAGAGGCT
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

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Crispr_ID: LT992477_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_3

1943155-1943288

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992477_3

>merge|LT992477|3|1943155-1943288|PILER-CR
TATTGAAGAAGATACAAACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992477|3|1|1943155-1943288|PILER-CR
TATTGAAGAAGATACAA	ACAAAGACAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: LT992477_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_4

1946699-1946832

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of LT992477_4

>merge|LT992477|4|1946699-1946832|PILER-CR
TATTGAAGAAGATACAAACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>LT992477|4|2|1946699-1946832|PILER-CR
TATTGAAGAAGATACAA	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: LT992477_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_5

1971296-1971390

Orphan

Consensus_repeat	Method
TTGCTTCGCAACAACTGCATAAGAGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992477_5

>merge|LT992477|5|1971296-1971390|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCTCTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCACCAACTGCATAAGAGCCT

>LT992477|5|3|1971296-1971390|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCT	CTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGC
TTGCTTCGCACCAACTGCATAAGAGCCT

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Crispr_ID: LT992477_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_6

2015644-2015722

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992477_6

>merge|LT992477|6|2015644-2015722|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>LT992477|6|4|2015644-2015722|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

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Crispr_ID: LT992477_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_7

2031021-2031115

Orphan

Consensus_repeat	Method
GCCTTTCTAACAAATAAATTTGAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992477_7

>merge|LT992477|7|2031021-2031115|CRISPRCasFinder
GCCTTTCTAACAAATAAATTTGAAGAAGACGAAGGAACGCAGTTGGACGTAAAACGTCAACTGCATAAGCCTTTCTAACAAATAAATTTGAAGAA

>LT992477|7|5|2031021-2031115|CRISPRCasFinder
GCCTTTCTAACAAATAAATTTGAAGAA	GACGAAGGAACGCAGTTGGACGTAAAACGTCAACTGCATAA
GCCTTTCTAACAAATAAATTTGAAGAA

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Crispr_ID: LT992477_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_8

2147447-2147532

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992477_8

>merge|LT992477|8|2147447-2147532|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LT992477|8|6|2147447-2147532|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Crispr_ID: LT992477_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_9

2311422-2311572

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTTACAACTAAAGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992477_9

>merge|LT992477|9|2311422-2311572|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTATGCATCAACTGCATAAGAGCCCCTTACAACTAAAGTTTAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTT

>LT992477|9|7|2311422-2311572|CRISPRCasFinder
TAGAAAGAAGCTCCTAACAACTAAAGTT	GAAAAATAGAGGAACACAGTTGGATGCTATGCATCAAC
TGCATAAGAGCCCCTTACAACTAAAGTT	TAAAAGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTT

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Crispr_ID: LT992477_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_10

2366991-2367203

Orphan

Consensus_repeat	Method
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LT992477_10

>merge|LT992477|10|2366991-2367203|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCAAAGTAACATGGCACCAACACCAAGCTCCCACAACAGCACATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCATAGCACTACATCAAGACGCATCGTGGTACCAGCACATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

>LT992477|10|8|2366991-2367203|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	AAGTAACATGGCACCAACACCAAGCTCCCACAACAGCA
CATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCA	TAGCACTACATCAAGACGCATCGTGGTACCAGCA
CATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

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Crispr_ID: LT992477_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT992477_11

2744292-2744376

Orphan

Consensus_repeat	Method
TGTAAGCTGACTTTTTCGTCAGCTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT992477_11

>merge|LT992477|11|2744292-2744376|CRISPRCasFinder
TGTAAGCTGACTTTTTCGTCAGCTTCTGTGTTGGGGCCCACCCCAACTTGCACATTAATGTAAGCTGACTTTTCCGTCAGCTTCT

>LT992477|11|9|2744292-2744376|CRISPRCasFinder
TGTAAGCTGACTTTTTCGTCAGCTTCT	GTGTTGGGGCCCACCCCAACTTGCACATTAA
TGTAAGCTGACTTTTCCGTCAGCTTCT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LT992477_8	8.1\|2147477\|26\|LT992477\|CRISPRCasFinder	2147477-2147502	26	LT992477.1	25819-25844	0	1.0
LT992477_8	8.1\|2147477\|26\|LT992477\|CRISPRCasFinder	2147477-2147502	26	LT992477.1	791460-791485	1	0.962
LT992477_1	1.1\|787087\|31\|LT992477\|CRISPRCasFinder	787087-787117	31	LT992477.1	843391-843421	2	0.935
LT992477_6	6.1\|2015667\|33\|LT992477\|CRISPRCasFinder	2015667-2015699	33	LT992477.1	1417982-1418014	2	0.939
LT992477_8	8.1\|2147477\|26\|LT992477\|CRISPRCasFinder	2147477-2147502	26	LT992477.1	300131-300156	2	0.923
LT992477_8	8.1\|2147477\|26\|LT992477\|CRISPRCasFinder	2147477-2147502	26	LT992477.1	742380-742405	2	0.923
LT992477_8	8.1\|2147477\|26\|LT992477\|CRISPRCasFinder	2147477-2147502	26	LT992477.1	787315-787340	2	0.923
LT992477_8	8.1\|2147477\|26\|LT992477\|CRISPRCasFinder	2147477-2147502	26	LT992477.1	2356066-2356091	2	0.923

1. spacer 8.1|2147477|26|LT992477|CRISPRCasFinder matches to position: 25819-25844, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 8.1|2147477|26|LT992477|CRISPRCasFinder matches to position: 791460-791485, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctatgttggggccccg	Protospacer
***.**********************

3. spacer 1.1|787087|31|LT992477|CRISPRCasFinder matches to position: 843391-843421, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

4. spacer 6.1|2015667|33|LT992477|CRISPRCasFinder matches to position: 1417982-1418014, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatg	Protospacer
*** ********.********************

5. spacer 8.1|2147477|26|LT992477|CRISPRCasFinder matches to position: 300131-300156, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagtttctgtgttggggccccg	Protospacer
*******.****.*************

6. spacer 8.1|2147477|26|LT992477|CRISPRCasFinder matches to position: 742380-742405, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccaccagcttctgtgttggggccccg	Protospacer
**.*********.*************

7. spacer 8.1|2147477|26|LT992477|CRISPRCasFinder matches to position: 787315-787340, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgctactatgttggggccccg	Protospacer
***** *** ****************

8. spacer 8.1|2147477|26|LT992477|CRISPRCasFinder matches to position: 2356066-2356091, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT992477_10	10.2\|2367123\|34\|LT992477\|CRISPRCasFinder	2367123-2367156	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
LT992477_10	10.2\|2367123\|34\|LT992477\|CRISPRCasFinder	2367123-2367156	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 10.2|2367123|34|LT992477|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

2. spacer 10.2|2367123|34|LT992477|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage