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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS398550 Orientia tsutsugamushi isolate Kato genome assembly, chromosome: I 1 crisprs RT,DEDDh 2 1 31 0

Results visualization

1. LS398550
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398550_3 1880340-1880418 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
LS398550_1 1.1|29099|49|LS398550|CRISPRCasFinder 29099-29147 49 LS398550.1 808301-808349 0 1.0
LS398550_2 2.1|497023|49|LS398550|CRISPRCasFinder 497023-497071 49 LS398550.1 808301-808349 1 0.98
LS398550_2 2.1|497023|49|LS398550|CRISPRCasFinder 497023-497071 49 LS398550.1 1548848-1548896 2 0.959

1. spacer 1.1|29099|49|LS398550|CRISPRCasFinder matches to position: 808301-808349, mismatch: 0, identity: 1.0

ccttcggctttaccttcggctttaccttcagctttaccgagctttatgc	CRISPR spacer
ccttcggctttaccttcggctttaccttcagctttaccgagctttatgc	Protospacer
*************************************************

2. spacer 2.1|497023|49|LS398550|CRISPRCasFinder matches to position: 808301-808349, mismatch: 1, identity: 0.98

ccttcggctttaccttcagctttaccttcagctttaccgagctttatgc	CRISPR spacer
ccttcggctttaccttcggctttaccttcagctttaccgagctttatgc	Protospacer
*****************.*******************************

3. spacer 2.1|497023|49|LS398550|CRISPRCasFinder matches to position: 1548848-1548896, mismatch: 2, identity: 0.959

ccttcggctttaccttcagctttaccttcagctttaccgagctttatgc	CRISPR spacer
ccttcggctttaccttcagctttacctttagcttcaccgagctttatgc	Protospacer
****************************.*****.**************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS398550_3 3.1|1880364|31|LS398550|CRISPRCasFinder 1880364-1880394 31 MN694638 Marine virus AFVG_250M1093, complete genome 6247-6277 8 0.742
LS398550_3 3.1|1880364|31|LS398550|CRISPRCasFinder 1880364-1880394 31 MN694344 Marine virus AFVG_250M1167, complete genome 37690-37720 9 0.71
LS398550_3 3.1|1880364|31|LS398550|CRISPRCasFinder 1880364-1880394 31 MN693686 Marine virus AFVG_250M1168, complete genome 6759-6789 9 0.71

1. spacer 3.1|1880364|31|LS398550|CRISPRCasFinder matches to MN694638 (Marine virus AFVG_250M1093, complete genome) position: , mismatch: 8, identity: 0.742

aaattgcggctaatcaaaagctaaaacatct	CRISPR spacer
tagctgcggaaaatcaaaagctaaaacaata	Protospacer
 *..*****  ***************** . 

2. spacer 3.1|1880364|31|LS398550|CRISPRCasFinder matches to MN694344 (Marine virus AFVG_250M1167, complete genome) position: , mismatch: 9, identity: 0.71

aaattgcggctaatcaaaagctaaaacatct	CRISPR spacer
ttgctgcggaaaatcaaaagctaaaacaata	Protospacer
  ..*****  ***************** . 

3. spacer 3.1|1880364|31|LS398550|CRISPRCasFinder matches to MN693686 (Marine virus AFVG_250M1168, complete genome) position: , mismatch: 9, identity: 0.71

aaattgcggctaatcaaaagctaaaacatct	CRISPR spacer
ttgctgcggaaaatcaaaagctaaaacaata	Protospacer
  ..*****  ***************** . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 8579 : 121065 101 Pseudomonas_phage(18.75%) transposase,integrase attL 85883:85898|attR 122472:122487
DBSCAN-SWA_2 137710 : 189609 53 Streptococcus_phage(33.33%) transposase,integrase attL 160785:160826|attR 180286:180327
DBSCAN-SWA_3 200723 : 241119 49 uncultured_Mediterranean_phage(14.29%) tRNA,integrase,terminase,transposase attL 191519:191544|attR 241624:241649
DBSCAN-SWA_4 249679 : 334809 98 Salicola_phage(18.18%) protease,tRNA,integrase,transposase attL 261172:261200|attR 284314:284342
DBSCAN-SWA_5 351109 : 409924 60 Aeromonas_phage(20.0%) tRNA,integrase,transposase attL 350339:350355|attR 383002:383018
DBSCAN-SWA_6 422648 : 512359 95 Wolbachia_phage(10.0%) tRNA,transposase,integrase attL 438772:438789|attR 514792:514811
DBSCAN-SWA_7 555292 : 712587 160 Wolbachia_phage(11.54%) tRNA,integrase,transposase attL 556706:556730|attR 712960:712976
DBSCAN-SWA_8 770805 : 852584 88 Tupanvirus(18.18%) tRNA,transposase,integrase attL 790363:790384|attR 820575:820596
DBSCAN-SWA_9 861325 : 907646 53 Mannheimia_phage(33.33%) tRNA,capsid,transposase,integrase attL 865667:865700|attR 874248:874281
DBSCAN-SWA_10 915480 : 946884 37 Streptococcus_phage(25.0%) transposase,integrase attL 915760:915779|attR 947038:947057
DBSCAN-SWA_11 963007 : 1008762 55 Geobacillus_virus(16.67%) tRNA,integrase,transposase attL 967223:967246|attR 1007756:1007779
DBSCAN-SWA_12 1024281 : 1060722 34 Wolbachia_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_13 1076909 : 1107568 38 Lymantria_dispar_multicapsid_nuclear_polyhedrosis_virus(50.0%) integrase,transposase attL 1071607:1071624|attR 1086720:1086737
DBSCAN-SWA_14 1119607 : 1191912 60 Streptococcus_phage(18.18%) integrase,transposase attL 1120080:1120107|attR 1198029:1198056
DBSCAN-SWA_15 1197861 : 1260696 50 Streptococcus_phage(21.43%) tRNA,integrase,transposase attL 1192167:1192192|attR 1216451:1216476
DBSCAN-SWA_16 1273802 : 1316210 40 Mannheimia_phage(16.67%) tRNA,integrase,transposase attL 1304778:1304793|attR 1318124:1318139
DBSCAN-SWA_17 1332106 : 1369511 38 Streptococcus_phage(50.0%) transposase NA
DBSCAN-SWA_18 1376953 : 1405827 42 Wolbachia_phage(50.0%) transposase,integrase attL 1385748:1385763|attR 1412257:1412272
DBSCAN-SWA_19 1414309 : 1453150 36 Wolbachia_phage(16.67%) protease,tRNA,transposase NA
DBSCAN-SWA_20 1490330 : 1538395 43 Pseudomonas_phage(25.0%) tRNA,transposase,integrase attL 1502829:1502846|attR 1517075:1517092
DBSCAN-SWA_21 1548696 : 1577436 32 uncultured_Mediterranean_phage(27.27%) tRNA,transposase,integrase attL 1569914:1569928|attR 1580731:1580745
DBSCAN-SWA_22 1597738 : 1655299 56 Pseudomonas_phage(11.11%) tRNA,transposase NA
DBSCAN-SWA_23 1660224 : 1716559 58 Streptococcus_phage(21.43%) tRNA,transposase NA
DBSCAN-SWA_24 1734511 : 1769503 43 Indivirus(33.33%) integrase,transposase attL 1735685:1735703|attR 1765228:1765246
DBSCAN-SWA_25 1777170 : 1897449 113 Bacillus_phage(20.0%) tRNA,transposase,integrase attL 1776745:1776767|attR 1896561:1896602
DBSCAN-SWA_26 1901666 : 1961244 60 Acinetobacter_phage(25.0%) tRNA,transposase,integrase attL 1912287:1912315|attR 1970713:1970741
DBSCAN-SWA_27 1971822 : 2013306 48 Acanthocystis_turfacea_Chlorella_virus(12.5%) protease,tRNA,transposase,integrase attL 1970713:1970736|attR 1983381:1983404
DBSCAN-SWA_28 2024377 : 2081208 53 Bacillus_phage(12.5%) transposase,integrase attL 2045275:2045295|attR 2082943:2082963
DBSCAN-SWA_29 2135963 : 2175607 49 Bordetella_phage(22.22%) transposase NA
DBSCAN-SWA_30 2185771 : 2229009 50 Moraxella_phage(25.0%) transposase,integrase attL 2209273:2209332|attR 2229066:2229181
DBSCAN-SWA_31 2239373 : 2290781 56 Mannheimia_phage(33.33%) tRNA,transposase,integrase attL 2252690:2252706|attR 2290870:2290886
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage