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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS398589 Bordetella pertussis strain VS366 genome assembly, chromosome: I 5 crisprs csa3,cas3,DinG,DEDDh 0 0 27 0

Results visualization

1. LS398589
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398589_1 254787-254871 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398589_2 437280-437373 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398589_3 1029801-1029895 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398589_4 1893667-1893794 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS398589_5 3469504-3469613 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 61595 57 Natrialba_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_2 168040 : 222657 50 Planktothrix_phage(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_3 228649 : 283842 50 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_4 360943 : 418583 55 Paramecium_bursaria_Chlorella_virus(16.67%) transposase NA
DBSCAN-SWA_5 624996 : 742147 117 uncultured_Caudovirales_phage(14.29%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_6 753434 : 821009 54 Streptococcus_phage(25.0%) transposase NA
DBSCAN-SWA_7 860392 : 920219 50 Vibrio_phage(25.0%) transposase,holin NA
DBSCAN-SWA_8 942023 : 990992 47 Staphylococcus_phage(28.57%) transposase NA
DBSCAN-SWA_9 1127327 : 1179053 46 Planktothrix_phage(18.18%) protease,transposase,tRNA NA
DBSCAN-SWA_10 1185614 : 1251203 57 Erysipelothrix_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_11 1350026 : 1418513 59 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_12 1522235 : 1580479 55 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_13 1626161 : 1692488 60 Streptococcus_virus(10.0%) transposase NA
DBSCAN-SWA_14 1728352 : 1783943 54 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_15 1828488 : 1879001 43 Bacillus_phage(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_16 1891309 : 1946738 52 uncultured_Caudovirales_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_17 2015683 : 2068937 52 Mycobacterium_phage(25.0%) transposase NA
DBSCAN-SWA_18 2103719 : 2148101 39 uncultured_Caudovirales_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_19 2322533 : 2363347 39 Yellowstone_lake_phycodnavirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_20 2610973 : 2664554 51 Salmonella_phage(22.22%) protease,transposase,tRNA NA
DBSCAN-SWA_21 2738016 : 2778685 41 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_22 2839209 : 2889808 39 Moraxella_phage(16.67%) transposase NA
DBSCAN-SWA_23 2910163 : 2960824 37 uncultured_Mediterranean_phage(33.33%) protease,transposase NA
DBSCAN-SWA_24 2970470 : 3088430 117 Staphylococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_25 3223581 : 3296339 60 Xanthomonas_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_26 3316038 : 3357203 38 Erwinia_phage(50.0%) transposase,protease NA
DBSCAN-SWA_27 3515631 : 3573523 55 Acinetobacter_phage(33.33%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage