CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LT993737	Brochothrix thermosphacta isolate CD 337 genome assembly, chromosome: CD337	4 crisprs	cas3,WYL,DinG,DEDDh,csa3	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LT993737_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT993737_1

260803-260931

Orphan

Consensus_repeat	Method
CGCAATCTCCGTCCCATACTGTCATTGTAAGCTCATGTCTTCGCAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT993737_1

>merge|LT993737|1|260803-260931|CRISPRCasFinder
CGCAATCTCCGTCCCATACTGTCATTGTAAGCTCATGTCTTCGCAACAATGTCAGCAAAGGATTGGTACTCAATTGCTGGCGCAATTTCCGTCCCATACTGTCATTGTAAGCTCATGTCTTCGCAACAA

>LT993737|1|1|260803-260931|CRISPRCasFinder
CGCAATCTCCGTCCCATACTGTCATTGTAAGCTCATGTCTTCGCAACAA	TGTCAGCAAAGGATTGGTACTCAATTGCTGG
CGCAATTTCCGTCCCATACTGTCATTGTAAGCTCATGTCTTCGCAACAA

Protein	Signature genes	Signature genes Name	Protein_function
LT993737.1\|SPN70842.1\|262593_262944_+\|putative-integral-inner-membrane-protein	unknown	unknown	gnl\|CDD\|224861
LT993737.1\|SPN70838.1\|257692_260563_+\|excinuclease-ABC-(subunit-A)	unknown	unknown	gnl\|CDD\|234734
LT993737.1\|SPN70835.1\|254646_255291_+\|putative-nucleotidase-(HD-domain-protein)	unknown	unknown	gnl\|CDD\|378993
LT993737.1\|SPN70845.1\|265251_266727_+\|succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
LT993737.1\|SPN70843.1\|263196_264135_+\|serine/threonine-protein-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
LT993737.1\|SPN70830.1\|248940_249825_+\|phosphate-ABC-transporter-(permease)	unknown	unknown	gnl\|CDD\|223654
LT993737.1\|SPN70834.1\|252372_254514_+\|putative-Heavy-metal-translocating-P-type-ATPase-(putative-cadmium-transporting-ATPase)	unknown	unknown	gnl\|CDD\|225127
LT993737.1\|SPN70848.1\|269729_270755_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378494
LT993737.1\|SPN70847.1\|268446_269406_+\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
LT993737.1\|SPN70844.1\|264165_264987_+\|prelipoprotein-diacylglycerol-transferase	unknown	unknown	gnl\|CDD\|183527
LT993737.1\|SPN70832.1\|250608_251361_+\|phosphate-ABC-transporter-(ATP-binding-protein)	unknown	unknown	gnl\|CDD\|224042
LT993737.1\|SPN70841.1\|262331_262571_+\|putative-DNA-binding-transcriptional-regulator-(stress-mediated)	unknown	unknown	gnl\|CDD\|377200
LT993737.1\|SPN70836.1\|255287_255530_+\|putative-membrane-protein-(putative-CsbA-protein)	unknown	unknown	gnl\|CDD\|370765
LT993737.1\|SPN70846.1\|266872_268390_+\|protein-of-unknown-function	unknown	unknown	gnl\|CDD\|276809
LT993737.1\|SPN70840.1\|261139_262318_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|226123
LT993737.1\|SPN70833.1\|251376_252042_+\|putative-phosphate-transport-system-regulatory-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
LT993737.1\|SPN70829.1\|248038_248944_+\|phosphate-ABC-transporter-(permease)	unknown	unknown	gnl\|CDD\|223646
LT993737.1\|SPN70849.1\|270815_271031_+\|hypothetical-protein	unknown	unknown	unknown
LT993737.1\|SPN70837.1\|255716_257678_+\|excinuclease-ABC-(subunit-B)	unknown	unknown	gnl\|CDD\|235395
LT993737.1\|SPN70831.1\|249838_250597_+\|phosphate-ABC-transporter-(ATP-binding-protein)	unknown	unknown	gnl\|CDD\|224042

Protein	Function_ID	Function_description	E-value
LT993737.1\|SPN70842.1\|262593_262944_+\|putative-integral-inner-membrane-protein	gnl\|CDD\|224861	COG1950, COG1950, Predicted membrane protein [Function unknown].	5.42073e-18
LT993737.1\|SPN70838.1\|257692_260563_+\|excinuclease-ABC-(subunit-A)	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
LT993737.1\|SPN70835.1\|254646_255291_+\|putative-nucleotidase-(HD-domain-protein)	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	2.47124e-68
LT993737.1\|SPN70845.1\|265251_266727_+\|succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
LT993737.1\|SPN70843.1\|263196_264135_+\|serine/threonine-protein-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.19097e-161
LT993737.1\|SPN70830.1\|248940_249825_+\|phosphate-ABC-transporter-(permease)	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.36777e-94
LT993737.1\|SPN70834.1\|252372_254514_+\|putative-Heavy-metal-translocating-P-type-ATPase-(putative-cadmium-transporting-ATPase)	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
LT993737.1\|SPN70848.1\|269729_270755_+\|hypothetical-protein	gnl\|CDD\|378494	pfam10783, DUF2599, Protein of unknown function (DUF2599). This family is conserved in Actinobacteria. The function is not known.	2.79768e-12
LT993737.1\|SPN70847.1\|268446_269406_+\|thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	1.19039e-142
LT993737.1\|SPN70844.1\|264165_264987_+\|prelipoprotein-diacylglycerol-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	6.06088e-117
LT993737.1\|SPN70832.1\|250608_251361_+\|phosphate-ABC-transporter-(ATP-binding-protein)	gnl\|CDD\|224042	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism].	6.05086e-171
LT993737.1\|SPN70841.1\|262331_262571_+\|putative-DNA-binding-transcriptional-regulator-(stress-mediated)	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	7.84393e-24
LT993737.1\|SPN70836.1\|255287_255530_+\|putative-membrane-protein-(putative-CsbA-protein)	gnl\|CDD\|370765	pfam09964, DUF2198, Uncharacterized protein conserved in bacteria (DUF2198). This domain, found in various hypothetical bacterial proteins, has no known function.	1.39834e-13
LT993737.1\|SPN70846.1\|266872_268390_+\|protein-of-unknown-function	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.88831e-08
LT993737.1\|SPN70840.1\|261139_262318_+\|conserved-protein-of-unknown-function	gnl\|CDD\|226123	COG3595, COG3595, Uncharacterized conserved protein [Function unknown].	3.5875e-16
LT993737.1\|SPN70833.1\|251376_252042_+\|putative-phosphate-transport-system-regulatory-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	6.48587e-44
LT993737.1\|SPN70829.1\|248038_248944_+\|phosphate-ABC-transporter-(permease)	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	5.08525e-93
LT993737.1\|SPN70837.1\|255716_257678_+\|excinuclease-ABC-(subunit-B)	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LT993737.1\|SPN70831.1\|249838_250597_+\|phosphate-ABC-transporter-(ATP-binding-protein)	gnl\|CDD\|224042	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism].	1.46517e-169

>LT993737.1|SPN70838.1|257692_260563_+|excinuclease-ABC-(subunit-A)
MVRKNEISVQGARVNNLKNIDVVIPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSHNPRSTVGTVTEINDYLRLLYARVGHPICPNHNIEIKAQTIEKMVERIMALPERSRIQILSPLVRGKKGEHKKLLQDIKKEGYVRVRVDGELYDVSDEITLEKNKKHNIDIIIDRIVVKEGIETRLSDSLEAALRLADGYAVIDVSESEELLFSEHYACPYCGFNVGELEPRLFSFNAPYGSCETCDGLGRTLKADIELVIPDMQKTLNEGAFVAWNPISSKYYPQMLASACHDFNIDMDTPFADLSADDQQLLLNGSGERLFHFHYTNDFGNTKDVDIPFEGVMTNIERRYKETNSDFVRDTMMGYMAEQPCKACSGYRLNEKARSVKIAGRHIGEICELAIVDSVKWVEALTLGAQDAQIAEPIVKEICNRLGFLDNVGLEYLTLARTAGTLSGGEAQRIRLATQIGSKLTGVLYILDEPSIGLHQRDNARLIDALKEMRDIGNTLIVVEHDEDTMMAADYLIDVGPGAGEHGGEIVAAGTPEKVMKNRKSLTGQYLNGKKFITVPTERRKGNGNFLKVTGATENNLKNIDFTVPLNTFTTVTGVSGSGKSTIVNEIVRKALSRHVNRANVKPGKHKKITGMEHIEKIIDINQSPIGRTPRSNPATYTGVFDDIRDLFTATNEAKVRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNSETLDIHYRGKNISDILNMTIEEGVEFFQNVPRIERKLRTIVDVGLGYVRLGQPATTLSGGEAQRVKLASELHKRSAGKSFYILDEPTTGLHADDIKRLLTVMQRLVDNGDTVLVIEHNLDVIKQADNIIDLGPEGGAGGGQVIAVGTPEEICKVPESYTGKYLKEVLERDKARVSATVKKAKAK
>LT993737.1|SPN70837.1|255716_257678_+|excinuclease-ABC-(subunit-B)
MGNETFKLESPYQPAGDQPRAIEKLVKNLKNGVKQQTLLGATGTGKTFTVSNVIRDLNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDFFQPEAYVPSKDLYIEKDSSVNDEIDQLRHSATASLLERRDTIVIASVSCIYGLGDPKSYFDRLISLREGMEIERNTLLRRLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRSERCLRIEFFGDEIERIREMDALTGEIIADREHVTIFPATHFVTAPEKMEVAMQNIRVELAEQLKYFRDEGKLIEAQRLEQRTNYDLEMLEEIGYCSGVENYSRQIELRPPGSTPHTLIDYFPDDFQIIIDESHVTMPQIRGMFNGDQARKQMLVDYGFRLPSALDNRPLRLEEFEEHVNQITYISATPGPYELEQNPDVIEQIIRPTGLLDPEVEIRPIDGQIDDLIGEINKRIEVDERVLITTLTKRMSEDLTDYLKELGIKVQYLHSEVKTIERLEILQDLRRGKFDVLVGINLLREGIDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNANGHVLMYANRITDSMQKALDETERRRIIQKAYNEEHGITPTTIKKAIHEVVSAGNTDVVEEVEEVIDTRTIAELEDDMKEAARMLDFETAAAIRDKILALKTSDEEE
>LT993737.1|SPN70836.1|255287_255530_+|putative-membrane-protein-(putative-CsbA-protein)
MSLDVFLSALLLPMLMVIVLTKVTYSRIMAVVLTVILIMTSAFLGYTNSLAIIIVDAFSITVGLIIVNYFKKKNEEGKEQ
>LT993737.1|SPN70835.1|254646_255291_+|putative-nucleotidase-(HD-domain-protein)
MGIHHFFGSLSDLELIVRCPGKFKYQPHNVAAHSFKVAQIAQFLGVVEEQSGQTIDWRSLYEKSLNHDYSELFIGDIKTPVKYASVELREMLSDVEHSMTQNFISKEIPERFQADFARFFKEGKDETLEGQILAVADKVDLLYESYAEIQQGNSEPLFFEIYAEALETIIKYRHLASVTYFIEEILPDVLKQNDASASHLATTTQALLKEATRK
>LT993737.1|SPN70834.1|252372_254514_+|putative-Heavy-metal-translocating-P-type-ATPase-(putative-cadmium-transporting-ATPase)
MEKHKITGIDCANCALELERDIRKVPNAKEAKLTYATETLVLPENVDLDQVSKVLAREGAAFAEIPNNHSDHDHGHDHDHSAGSHKKELTLLAVSAVLFAAVMMMEANLPRWAELILYLIAASISGYTTFLRGLRNLFRFRFTIDTLMTIAMIGAFLIGEWREGAMVAILFGLNEYLESYGMRRAQQSMKSLLSLAPETATLIIDGKEREVGIENLAVGDKVIVKAGEKIPSDARVYSGSSNVNEAAITGEAVPVKKREGDDVFGGAVNQDGTLILSITKVYKESSMAKIFALVEEAQSQQTPLELAIDKFARFYTPVILVLAMLVMLVPGAITGDWNLWVYQGLAILIIGCPCALVLSSPIALMAGLTRSAKIGVLVKSGVFLEQLAKLDEVVMDKTGTLTKGELSVVSTWLAPADPTINVFEIVRKMEGESHHPLALALITEAEKQGANNTLADGSVRTIAGKGLEMTTEDTSYFLGNNRLFEEATWSIDAKHAYDLMLKEGMTVAILGTKTDILAIFGIRDQLREEAKETVAALKRSGVKQVTMLTGDNAESAQLMAEKAGLDQFKANLLPEDKVAYIKEAKEKRLVAMVGDGINDSPALATAQVGIAMGQGSDSAIEVADVVLMQSHLKRLPFVVDIGHKVQRVIHWNIGIALGLKIIALLLTIPGWLTLWFAILSDMGATVLVTLISLTLLIPSKAEKELLVGKKVEE
>LT993737.1|SPN70833.1|251376_252042_+|putative-phosphate-transport-system-regulatory-protein-PhoU
MNGRQLLDQEMRNLQQQLAEMGLLVNEAILKAGKAFATKDADAANEVIRNDEVINEKEQQLEQHIIEVIALQQPVTLDLRRVITMIKISADLERMGDHAVVLAKAARSAEKHDIDISLKECEKITQLLSETLTETLEAYGEMNEEKAKKIALKIFSINQLSHQLGKQILSNIVPYPEHVKPISKLFNGIKSFERIGAYTLNICEWVIYLKTGTMVELEEEE
>LT993737.1|SPN70832.1|250608_251361_+|phosphate-ABC-transporter-(ATP-binding-protein)
MTVVETKALNLFYGNKQALFDVSLTFPKNQIISLIGPSGCGKSTFLRTLNRMNDLIPNVKTSGDIFVKDIKVTSSRTDLVDLRQRVGMVFQQPNPFPFSIYDNVAYGPRLHGTTNKWELDKIVQESLMKASLWEEVQDRMHTSALGLSGGQQQRLCIARVLAVKPEIILMDEPTAALDPISTAKIESLIVELKEKYTILIVTHNMQQASRISDLTAFFLNGHVVEYDDTKNIFLNPKEKETQDYISGRFG
>LT993737.1|SPN70831.1|249838_250597_+|phosphate-ABC-transporter-(ATP-binding-protein)
MSEFAIETKKLNVHYGDKHAIKDVSLAFPKNQVIALIGPSGCGKSTYLRSLNRMNDEIEGCRSEGPILYHGRDVNTAAEDLYELRKNIGMVFQKPNPFTKSIYKNITFALKRHGIKEKHVLEERVEKSLKAAALWEEVKDTLNKSALSLSGGQQQRLCIARTVATEPDILLLDEPASALDPISTSKIENLITQLKEHYTIIIVTHNMQQAARISDKTAFFYLGEVIEYNDTATIFTNPSHERTQAYVSGNFG
>LT993737.1|SPN70830.1|248940_249825_+|phosphate-ABC-transporter-(permease)
MNSKLKDRFATSILYVIAGIICALLLGIIGYVLVLGVPQISWNFLTAPSESFSAGGGIGPQLFNSFYLLFLTLCISVPISLGAAIYLSEYAKDNWITKSVRLMVEVLSSLPSIVVGLFGFLIFVIYFGWSFSILSGALALTLFNLPILVRVMEESLKSVASTQREAGLALGLTRWETVIYVLVPTVLPGIITGIILSAGRVFGEAAALIYTAGQNAPALNFANFNIFSQESPWNIMRPAETLAVHIWKVNSEGVVPDATAISNGTAAILIIAILLFNVLARVIGKYVYRLMTSS
>LT993737.1|SPN70829.1|248038_248944_+|phosphate-ABC-transporter-(permease)
MSEITRSNKKNLERFGKIISFICVSVMAIGALVIIYFVASKGLSTFFVNKVSIWSFLTGQDWQPSKVDASGNPLVGALPMIIGSFGVTLLAALIAAPLAIGAAIFMVEISPKFGKRILQPVIELLVGIPSVVYGLIGLSVIVPMMRHFFGGTGFGIGAGTLVLTVMILPTVTSLSVDAISAVPRHYREASLALGATRWQTIWGVILKSCRSGLLTALVFGMARAFGEALAVQMVIGNAAIMPTSLVEPASTLTSILTMSMGNTIPGQLENNVLWSLALVLLLMSLFFIIIVRLIGKRGSIK
>LT993737.1|SPN70840.1|261139_262318_+|conserved-protein-of-unknown-function
MENERKRILEFVKQGVITTEEALVLLENMAKKEGATVAEEKVNRTDSQNQEQNKRTEPQNGKAQSQYKRNDSNEWEQHKEQSTKETSEGTDWNRMGDQIGSFMNDAFKQLKEVALPFLKPARLERHFVYNKPTASNITLDVFNGHVEVVESDNEDIHLFVKAQNYKPIKQEDMESYFFKQTSLQNDDDNFVFKSPSKGIRVDVVLQLPAGKYDLISVKSLNGNISISELSCNDLLAKSTNGNIIIGKLDATDAEIQSVNGELRIDKATLRQIEMTTVNGPIHYTGDSKQVELQTKNGLINARIEGIDTEEAKIRTTAGTIKVAVPNDIGIDGDIRSNFGKIQLNLSDFDILQDEKDKVKKHTIFSKMPVSPGNITLVCDSSAGNVQIEEYRI
>LT993737.1|SPN70841.1|262331_262571_+|putative-DNA-binding-transcriptional-regulator-(stress-mediated)
MSKKLTKSRSDRKLAGVCGGLAAYFNIDATIVRLIFAIGALFSFGTLLLIYIVLYFVLPDETAGNTYRSSTEDEANKSW
>LT993737.1|SPN70842.1|262593_262944_+|putative-integral-inner-membrane-protein
MKWLSGIVINAIVFIAIAGFTQSFHVASIWVALGASFVLAVLNILLKPILIILTLPINFLTLGFFTFVINAFLLQLTSKIVGSSAFHIDTFGIALLIAIAMTIVNMAISSAFRKEV
>LT993737.1|SPN70843.1|263196_264135_+|serine/threonine-protein-kinase/phosphorylase
MVEPSVTVEALYENMDFKLLAGEKGLNHEVQVSDLSRPGLELSGFMNYYPEDRIQLFGMAETSYLENLTSAEKTVLFDKLCTPRTPAFVIARSLPAPQELVDIANERGIPVLSSKLKTTRLSVYITNFLETELAPISTMHGVLVDIYGVGVLIRGNSGVGKSETALELVQRGHRLVADDSVEIRQLDGITLIGRSPKLIEHLLEIRGLGIINVMDLFGAGSVRPDKKISLVIELELWDAQKQYDRVGLEEHTTGICDVQVPKITVPVRPGRNLAVIIEVACMNFRLKQLGNNAARKFTDSLTQEIQSKNNNN
>LT993737.1|SPN70844.1|264165_264987_+|prelipoprotein-diacylglycerol-transferase
MTEPLNPIALQIGGLAIHWYGIIIASAVVIAFLLTIPEAKRQNFDHEKFIDLLIWAIPLAIISARIYYVAFEWSYYSQHPGDIIKIWEGGIAIYGALIGAVVTAIIFTHIKKISFWQIVDIAAPSLIIAQAIGRWGNFMNQEAYGEAVSRTYLEGLHLPMFIINQMNIEGVYHHPTFLYESLWSIVGFIVLLVIRRLLPLKSGEVFISYVIWYSFGRFFIEGMRTDSLMLDIFGADLRVSQVLALLLVLGGIGLWVYRRLTNKNLPYYKDAER
>LT993737.1|SPN70845.1|265251_266727_+|succinate-semialdehyde-dehydrogenase
MDKTKIETLIEEVPKGLFINGQWQEADGGKQTEVINPATGQVIAHVANAGEKETEQAITAAEKAFPKWSGLTADERGAWLHKMADAIRGAAKDLAVVMTIEQGKPLNQAEAEILSGAACLDWNAEEVKRLKGETIPGPTGELLLVQHEPLGVVAAITPWNFPSAMITRKMAPAIAVGNTVVLKPSPETPLSALALMALFDKIGLPAGVVNIVTGDAKAIGCVLTADNRVRKLTFTGSTAVGKMLFAQSADTVKKLSLELGGHAPFIVFEDANVDKVVADLVAAKFRNNGQVCTSPNRIFVHESIQATFTEKLVSAVEQVKIANGLDENASAGPLIREDAIEKIDKQLDDAKGKGAKILSGGERLTSAEFDDGYFYKPTVITGITKEMAIFYEETFGPVLPIITFNEDDEVIEAANDTLYGLASYFYTNDIGRIAEVGRRLQYGMVGVNSINISYPQTPFGGVKHSGFGRENGAQGLSDYIQVKFLNITYKK
>LT993737.1|SPN70846.1|266872_268390_+|protein-of-unknown-function
MPESDSTRIHFLNPTPEFYFAKGTKAFEQSDLPAAIKYLTRAAGLAPKNTLIICQLAICYTENGECEKSNELLSDALKIEYKPYFYYFMANNYAYLANFKQAIYYSRRYLQEKPRGEYAGPARELVAVLEERFEAEQQDEAVKPLVRESTPLERQQQAVVDQVESYVKEGYVDKAVRYLETAMLTETLPIYALELSVLYYRNNRKSEAEALIAGVETAYEGHYLARCHRAISAYYSGDWQLFQSYVTQLEAIYPFTSHEQLQYAIVKTLAKDYEGALAIFTKLNENIGAHRKFYFYVSKAAFYSGNQALADYYWQQFGNYDTTEPYANIWREMSDDNIIEADAQLMFSLLNSTEQADRLMALMLVHLTKNKVEALLFSYHFTPGFFTEMEKGFYADASIITNSKQTLAYKNGGFTKQVALALSAEGCKVTRETIDVYKLLFRFTTEQTEKGIICQEEDQEALVAALLHENQQKMADKLTKRTLIKRFGVTQGQLNKYIKKIQAYK
>LT993737.1|SPN70847.1|268446_269406_+|thioredoxin-reductase
MSTEEKVYDVIIIGAGPAGMAAALYASRSELSTLMIERGVPGGQMVNTAEVENYPGFGNITGPDLSTKMMDGAKQFGAEYAYGDIKGIEDHDTYKIVTAGKKSFKARAVIIATGAEHRKADVAGEDDYSGRGVSYCAVCDGAFFKDQELIVVGGGDSAVEEGTYLTRFASKVTIVHRRDKLRASPLIQKRAFDNEKVDFVWNHTIKEIKGDDKKVSSVVLESTTDDTTQEINASGVFVYVGIIPLTEPFKDLGILNEEGYIKTNANMETEIPGIFAAGDARDTNLRQIVTAAADGGIAGQFVLKYLEELEERVAETANN
>LT993737.1|SPN70848.1|269729_270755_+|hypothetical-protein
MKKIVITLLCTTLILTNVVMMNSEVQASEDGTVLFEKGIVDELSPQPLVNVAIEEKNERFIAETDESQVTIPKDMEEPAILSDNEEGQSLSMQVNLDEKQNETISAEDTVVYETKNTSLGIDAFDGGLRHTYVMENKEAPNTFEVKYDADNISHLELSKDGEGKTDGSILICDKAGETLAALDIPWAKDANGKDVETYYQINENNTVKQVIKVTDEVVYPVVADPTTFTTYFSSGKWIVRGKGKYNRSLSLVPKAKLRASGAFSFSLPFVVLSNAVAKDSWNKVYNKYKNSKHWEKTTGMKNQYMCHFSFAFGKSAFNLEPKRPVRSYFNTVRPPVYCNPE
>LT993737.1|SPN70849.1|270815_271031_+|hypothetical-protein
MKNKIILVLAIVGLFVFVYLTTQLGIKSDEMTFNSYMNYYSYAVFALGFISMLTIILMLFHLFNKKLFILV

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Crispr_ID: LT993737_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT993737_2

635390-635514

Orphan

Consensus_repeat	Method
CAATCGATGAAGCGAATAAACATGGCATTAGTATGGTATTTACAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT993737_2

>merge|LT993737|2|635390-635514|CRISPRCasFinder
CAATCGATGAAGCGAATAAACATGGCATTAGTATGGTATTTACAAAAATTCGTCATTTTAAACATTAACATAAGAAACAATCGATGAAACGAATAAACATGGCATTAGTATGGTATTTACAAAAA

>LT993737|2|2|635390-635514|CRISPRCasFinder
CAATCGATGAAGCGAATAAACATGGCATTAGTATGGTATTTACAAAAA	TTCGTCATTTTAAACATTAACATAAGAAA
CAATCGATGAAACGAATAAACATGGCATTAGTATGGTATTTACAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LT993737.1\|SPN71203.1\|623903_624392_+\|N5-carboxyaminoimidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
LT993737.1\|SPN71216.1\|637786_639997_+\|ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|273429
LT993737.1\|SPN71211.1\|632289_633330_+\|phosphoribosylaminoimidazole-synthetase	unknown	unknown	gnl\|CDD\|235439
LT993737.1\|SPN71208.1\|627968_628649_+\|phosphoribosylformylglycinamidine-synthetase-I	unknown	unknown	gnl\|CDD\|235140
LT993737.1\|SPN71215.1\|637261_637573_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|226893
LT993737.1\|SPN71206.1\|626992_627715_+\|phosphoribosylaminoimidazole-succinocarboxamide-synthetase	unknown	unknown	gnl\|CDD\|181800
LT993737.1\|SPN71207.1\|627717_627972_+\|factor-required-for-phosphoribosylformylglycinamidine-synthetase-activity	unknown	unknown	gnl\|CDD\|235659
LT993737.1\|SPN71220.1\|643748_645200_+\|glutamyl-tRNA(Gln)-amidotransferase-(subunit-A)	unknown	unknown	gnl\|CDD\|234572
LT993737.1\|SPN71205.1\|625522_626824_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176464
LT993737.1\|SPN71204.1\|624384_625506_+\|N5-carboxyaminoimidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
LT993737.1\|SPN71214.1\|635551_636859_+\|phosphoribosylglycinamide-synthetase	unknown	unknown	gnl\|CDD\|234856
LT993737.1\|SPN71212.1\|633334_633922_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
LT993737.1\|SPN71219.1\|643435_643726_+\|glutamyl-tRNA(Gln)-amidotransferase-(subunit-C)	unknown	unknown	gnl\|CDD\|178810
LT993737.1\|SPN71221.1\|645213_646644_+\|glutamyl-tRNA(Gln)-amidotransferase-(subunit-B)	unknown	unknown	gnl\|CDD\|235489
LT993737.1\|SPN71210.1\|630842_632276_+\|glutamine-phosphoribosylpyrophosphate-amidotransferase	unknown	unknown	gnl\|CDD\|235984
LT993737.1\|SPN71222.1\|646896_647589_+\|putative-two-component-response-regulator	unknown	unknown	gnl\|CDD\|223816
LT993737.1\|SPN71209.1\|628638_630858_+\|phosphoribosylformylglycinamidine-synthetase-II	unknown	unknown	gnl\|CDD\|234921
LT993737.1\|SPN71218.1\|642020_643184_+\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|377863
LT993737.1\|SPN71217.1\|640011_642024_+\|DNA-ligase	unknown	unknown	gnl\|CDD\|236137
LT993737.1\|SPN71223.1\|647566_649750_+\|putative-two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
LT993737.1\|SPN71203.1\|623903_624392_+\|N5-carboxyaminoimidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	5.37079e-94
LT993737.1\|SPN71216.1\|637786_639997_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
LT993737.1\|SPN71211.1\|632289_633330_+\|phosphoribosylaminoimidazole-synthetase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LT993737.1\|SPN71208.1\|627968_628649_+\|phosphoribosylformylglycinamidine-synthetase-I	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	5.63854e-160
LT993737.1\|SPN71215.1\|637261_637573_+\|transcriptional-repressor	gnl\|CDD\|226893	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown].	1.18139e-52
LT993737.1\|SPN71206.1\|626992_627715_+\|phosphoribosylaminoimidazole-succinocarboxamide-synthetase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	5.21405e-134
LT993737.1\|SPN71207.1\|627717_627972_+\|factor-required-for-phosphoribosylformylglycinamidine-synthetase-activity	gnl\|CDD\|235659	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed.	6.97031e-33
LT993737.1\|SPN71220.1\|643748_645200_+\|glutamyl-tRNA(Gln)-amidotransferase-(subunit-A)	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
LT993737.1\|SPN71205.1\|625522_626824_+\|adenylosuccinate-lyase	gnl\|CDD\|176464	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).	0
LT993737.1\|SPN71204.1\|624384_625506_+\|N5-carboxyaminoimidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
LT993737.1\|SPN71214.1\|635551_636859_+\|phosphoribosylglycinamide-synthetase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
LT993737.1\|SPN71212.1\|633334_633922_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	2.40919e-90
LT993737.1\|SPN71219.1\|643435_643726_+\|glutamyl-tRNA(Gln)-amidotransferase-(subunit-C)	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.93467e-37
LT993737.1\|SPN71221.1\|645213_646644_+\|glutamyl-tRNA(Gln)-amidotransferase-(subunit-B)	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
LT993737.1\|SPN71210.1\|630842_632276_+\|glutamine-phosphoribosylpyrophosphate-amidotransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
LT993737.1\|SPN71222.1\|646896_647589_+\|putative-two-component-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.33083e-82
LT993737.1\|SPN71209.1\|628638_630858_+\|phosphoribosylformylglycinamidine-synthetase-II	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
LT993737.1\|SPN71218.1\|642020_643184_+\|putative-lipoprotein	gnl\|CDD\|377863	pfam07537, CamS, CamS sex pheromone cAM373 precursor. This family includes CamS, from which Staphylococcus aureus sex pheromone staph-cAM373 is processed.	1.39437e-139
LT993737.1\|SPN71217.1\|640011_642024_+\|DNA-ligase	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
LT993737.1\|SPN71223.1\|647566_649750_+\|putative-two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.94299e-36

>LT993737.1|SPN71212.1|633334_633922_+|phosphoribosylglycinamide-formyltransferase
MKIALFASGNGSNFAAMLAAIETGHLSAEIGILVCDQPEAVVVERAKVNNIETFVFKARQYKDKATFETKIIEQLQQHEIELVVLAGYMRLIGPTLLTAYEGKIINIHPSLLPAYAGKDAIERAYAAGEKEIGITIHYVDAGMDTGEPIAQFKVARTEGDTLESLEARLHQTEHVYYPQIVQQLIEKMEGTVKDK
>LT993737.1|SPN71211.1|632289_633330_+|phosphoribosylaminoimidazole-synthetase
MTNNAYARAGVDVTAGYETVERIKKHVQRTERQGVMGAIGGFGGLFDLSELKLKQPVLVSGTDGVGTKLKVAIAANKHESIGIDCVAMCVNDIVAQGAEPLFFLDYIATGKAIPEQLEQIVVGVAEGCVQAGCALVGGETAEMPGMYADNDYDLAGFTVGAAEKTALITSDNVKAGDVLLGLPSSGIHSNGYSLVRKIFFEQKDFELDVILPELGQPLSDVLLTPTKIYVKPILALKEAVAIHGISHVTGGGFVENIPRMLPEGLSANIKLGSWPTLPIFEALQHYGALDPLEVYEIFNMGIGMVVAIAPEDVANAQATLLAAGESSYVIGTVVADDAHHVRLEEV
>LT993737.1|SPN71210.1|630842_632276_+|glutamine-phosphoribosylpyrophosphate-amidotransferase
MSAEIKGLNEECGVFGIWGHHEAPSVTYFGLHSLQHRGQEGAGICVTDGEKIDGHRNLGLLADVFKNGELDQLHGDGAIGHVRYATAGGKTLSNVQPMLFHFQDSSLALAHNGNLINARTLRRKLEREGAIFQSSSDTEVLAHLIQRGISDDFYDNLKAALCQVKGGFAYVLLTEDAMICALDPSGFRPLSIGKIGDAYVVASETCAFDVVGAEFVRDVEPGEMIVFDKDGMHIDHYRTDTQHAICSMEYVYFARPDSNIAGVNVHTARKRMGVSLAQEAPVEADMVIGVPDSSISAAIGYAEEAQLPYELGLIKNRYVARTFIQPSQELREQGVKMKLSAVSGVVKGKRVVMIDDSIVRGTTSKRIVKLLREAGAAEVHVRIASPPLKYPCFYGIDIQTRRELIAANYTVAEICEQIGADSLEYLSCDGLVEAIGRPFPAEKYGGITMAYFNGDYPTGLYDYEQEYLESLEESSLR
>LT993737.1|SPN71209.1|628638_630858_+|phosphoribosylformylglycinamidine-synthetase-II
MLTKNEPTAAMIAEQQLYLEMGLTPSEYDMVCDILKRQPNYTETGLFSVMWSEHCSYKNSKPVLAKFPTTGEQVLMGPGEGAGIVDIGDGQGVCFKVESHNHPSYVEPYQGAATGVGGIIRDIFSMGARPIALLNSLRFGEIDNAHTKYLVNEVVAGIAGYGNSIGIPTVGGEIQFEPSYAKNPLVNAMCVGIIDQKDIQKGKASGVGNSVMYVGAKTGRDGIHGATFASVEFSEEGEQQRSAVQVGDPFMEKLLIEACLEVIQKHSDILIGIQDMGAAGLVSSSSEMASKAGSGLRLNMDVVPQRETEMTPYEMLLSESQERMLLCIKKGEEHTIQALFERYGLEGVVIGEVTDDGMYTIIHQGEVVADVPVDALAEEAPVYHKLATEPQQYRDFQAEAPFVPQITNAAQTWKDLLSQPTIASKRHVYEQFDYQVRTNTVVIPGSDAAVLRVRGTNKAIAMTVDCNSRYLYLDPKVGGQIALAEAARNIVCSGAQPLAITDGLNFGNPEKPEIFWQIEQAADGIAEGCRVLNTPVISGNVSLYNETDGEAIYPTPVIGMVGLIKDLAHVTTQSFAAADDSIFLIGETAAEFNGSELQKLQLGHISGKAPALDLAVEQDYQAKLLTAIKQGLVVSAHDLAEGGLAIALAESAFKGEFGVAVSVDFEQALLFSESQSRFLISVKPEQHEAFAQHFGAAAVAIGKVTADGLLRAQTTNGTVEVTTAALKTAWEATLPCLLK
>LT993737.1|SPN71208.1|627968_628649_+|phosphoribosylformylglycinamidine-synthetase-I
MKFAVIQFPGSNCDIDMLSAIREIVKEEADYVWYAETSLEGYDAVLLPGGFSYGDYLRTGAIAKFAPIMSEVIRFATEGKPVLGVCNGFQILTESGLLPGALIRNKNLHFVCKMSQLKIENTATLFTNAYQQNDTLSIPIAHGEGNYYCDEETLQRLKENKQIVFTYAGENPNGSIANIAGIVNEQGNVLGMMPHPERAVESLLGSADGLNVFQSIVKQWRESHVN
>LT993737.1|SPN71207.1|627717_627972_+|factor-required-for-phosphoribosylformylglycinamidine-synthetase-activity
MFKVKVYVTLKKSVLDPQGVAVKDSLNSMDYSEIEDVRIGKYMEVMVNPKERSVETVVNEICDKLLANPVMENYWYEIEEVEEA
>LT993737.1|SPN71206.1|626992_627715_+|phosphoribosylaminoimidazole-succinocarboxamide-synthetase
MQKGHLLYEGKAKSLFATESPDILWMTYKDDTTALNGARKTAFTDKGKLNNQISTLLFHFLEKNGVQTHLLETLSDTEQLVKKVTVIPIEIIIRNVIAGSFAKKLGVAEGEELAEPIVEFYYKEDALDDPFINDDHVRYLKLATTAEIVELKELALIINTLLQQRFLAADILLVDFKIECGRLNNQTIVLADEISPDSCRLWDVNTKQKLDKDVFRHDLGDLVSVYQEVLQRLLNKTTEV
>LT993737.1|SPN71205.1|625522_626824_+|adenylosuccinate-lyase
MIERYTRPEMGNIWTMENRYKAWLEVEILADEAWAELGMIPKEDAAKIRANASFDSARIAEIEKETRHDVVAFTRSVSESLGDEKKWVHYGLTSTDVVDTANGYLLKQANDILRTDLHNFIEIIKNKAIEHKDTVTMGRTHGVHAEPTTFGLKLALWYSEMQRNLERFEHAAHTVEFGKISGAVGTYANIDPFVESYVCEKIGISADPISTQVLQRDRHAEYVSTLALIATSIEKFATEIRGLQKSEIREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVVRGHVMTAFENVTLWHERDISHSSAERIILPDATILLDYMLNRFGNIVKNLTVFPENMKRNMEATHGLIYSQHVLLTLIDKGMAREEAYDTVQPLAMTSWEESLPFRGLVENNPIIAGKLSAEEIEACFDYNYHLTKVDFIFERLGLISK
>LT993737.1|SPN71204.1|624384_625506_+|N5-carboxyaminoimidazole-ribonucleotide-synthase
MNKQLYPGQTIGIIGGGQLGKMLALSAKSNGFYVIVLDPVANCPCAQVSDEQIVADYDDKTALKQLAQRVDVLTYEFENIDYNALQAVENETIVAPNAEILSITQDRILEKTFLTDLSINVAPFAVIVDRTDIDAKIAGIGFPSVLKTSNGGYDGKGQVVMQDEQDIEEAAKLLQYGPCVLEAWIPFDSEASILVSRNHSGDIQLFPVVENEHRDNILHLTIAPARLSAEVILQAESIATKLAQKTGLVGTLAIELFIGKNEAVYVNELAPRPHNSGHYSIEACDFSQFEQHIRAIADWPLQRPQLLKKAIMVNVLGQHVDKVYAAIPHHPDWHIHMYGKDEAKHNRKMGHITLLTNDVESALEDLKNTRIWD
>LT993737.1|SPN71203.1|623903_624392_+|N5-carboxyaminoimidazole-ribonucleotide-mutase
MTVKIGVIMGSTSDWPTMKLACDVLEQYGIDYEKKVVSAHRTPDLMFEYAEQARQRGIQIIIAGAGGAAHLPGMVAAKTTLPVIGVPIQSRALNGMDSLLSIVQMPGGVPVATVAIGEAGAKNAGLLAAQILGINDNDIATRLDDNRNDMRNTVIESSDFLE
>LT993737.1|SPN71214.1|635551_636859_+|phosphoribosylglycinamide-synthetase
MKLLVIGSGGREHAVSKKLLQSNRVTAVYCAPGNPGMHGDGIKTVAIAETDVAELITFSKREQITWAFVGPEVPLLEGVVDALEKAGIPTFGPRKQAALIEGSKDFAKQLMSKYGIPTAASQTFTDFEKAKNYLLEQGAPIVVKADGLAAGKGVVVAITVEEAIAAAQAMLCDKQFGNSGAQIVVEAFLEGEEFSLMAFVDGAKVYPMVIAQDHKRALAGDKGLNTGGMGAYAPVHHIPAAVVETAIETILEPTALALVNEGRSFTGVLYAGLILTSDGPKVIEFNARFGDPETQVVLDRLSSDFAAVITDLLAHRTPTLVWQTEGVTLGVVLASKGYPEAYEKGAQLVGLEKLADHTQVFHAGVAQNEAKQLIANGGRVSLFSVRAKTMAEAQQSIYAELAKLDTSDYVYRNDIGHRALKAPSSPFRTEEIGKE
>LT993737.1|SPN71215.1|637261_637573_+|transcriptional-repressor
MQIEKLRGEGLDEFFQAVLTLKDLEECYHFFDDVCTVNEIQALSQRFQVAKMLRGGSTYSKIEEATGASTATISRVKRSLNWGNDSYELVMSRLEENKKAENK
>LT993737.1|SPN71216.1|637786_639997_+|ATP-dependent-DNA-helicase
MEITGKQLVEGLNPEQQKAVITTEGPLLIMAGAGSGKTRVLTHRVAYLIKEKNVNPYNILAITFTNKAAREMKERVGKILGSDADSVWVSTFHSMCVRILRRDAERMGLSRSFTILDSSDQLTVVKKIMKDRDIDPKRYQPRAMLSAISNAKNELINATEYTKEAAGYFEKLVADVYMDYEKKLRKNQALDFDDLIMMTIELFQQVPEVLEFYQRKFQYIHVDEYQDTNKAQYTLVKLMAARFQNICVVGDSDQSIYGWRGADISNILDFEKDYPKSTTIVLEQNYRSTKRILAAANGVIEKNSNRRPKELWTGNSEGNKITYHRALTEREEATYVVGKIQDRLSEYKYKDMAILYRTNAQSRVLEETLMKSSIPYTMVGGQKFYDRKEIKDVLSYLRLVANNADDISLARVVNVPKRGVGPGSLDKLAAASLAYDTTMFEMMGRIELVALSTKISKELLSFYDMIIGFSQQQDYLSVTELIEQILEKSGYRDMLKAEKTIEAETRVENIDEFLSVAQQFEKDNDDKSLIAFLTDLALVADVDSLQDPAENPADGAITLMTLHAVKGLEFPVVYLVGMEEGIFPHSRALDDEDEMEEERRIAYVGITRAEKELYMTAAYSRTLYGRSTSNAESRFINEIPEELLERATETKIKQAIPFATNRRSTGQKTPEVKALQQTGGSQAGWSVGDKAKHKIWGVGTVVSVKNEGRSMELDIAFPSPTGVKRLLAEFSPIEKV
>LT993737.1|SPN71217.1|640011_642024_+|DNA-ligase
MNERLDELKQRLHELSYAYYVLDNPVAEDGEYDALYAELVTIETAHPELVTEDSPTQRIGGVVLDKFEKVPHDVPMLSMGDVFNEEEIRQFDQRVRKELEVDQVDYTVELKIDGLALSLKFEEGRLVQGATRGNGTIGENITANVKTIRSVPLKLREPLTIEIRGEAYMPKRSFAKLNESREEEGLALFANPRNAAAGSLRQLDTKIAASRNLDTFLYAVANPSVLNVERHSEMLAAIEKIGCHVNNEFKVVHSIEGVMEYIAKWTEKRNQLPYDIDGIVIKVDRFDYQRQLGATVKVPRWMIAYKFPAEEQSTRLIDIELSIGRTGVVTPTAILNPVQLAGTTVQRASLHNADYINGKDIRINDEVIVKKAGDIIPEVVRVLSEKRPADSEPYVMPTHCPSCESELVRLDDEVALRCINPKCGAQIREGLIHFASRNAMNIEGLGDKVVSQLHEHHLIADVADLYKLKMEDLLPLERMGEKSATKLLAAIETSKANSLEMLLFGLGIRHVGAKAAKSLAQHFGEIEALQTATVEELISIDDVGGIMADSIVTYFSNPQVVELIEELRQVNVNLTYTGPSLANKSADELVFNGQTVVLTGKLEHMTRNEAQLLIESLGGKVTGSVSKKTDVVVAGTDAGSKRTKAESLQIPIWSEADLRVYLKDEGDQKL
>LT993737.1|SPN71218.1|642020_643184_+|putative-lipoprotein
MKKLIILAAGLTLVLAGCAPQLSSEKAVKNDSSTSKKETQIVTKNNISSDYYRTILPYKESPTRGLIVSNLNTRFDINEMEIGLQRIATTKYNSEDYAFQEGQYLTKGTVTSWLNRKYSDKQLKEKKLSDSDNVGLNPVFNGNGTDRNPIYLAHILEQNYLENKGDTVKLNGVMIGLAMNSVDYYQKESYGATYSTPISKAKMKEEGQKMADTLITRMRQMKGLSDVPITIAIFAQNSKDAMVSGSYLSYATAKQGSSELGKWDDLDESFVLFPSDEAKSDHLDDYNWFKSFSADIQTYFSNFNGVIGRGFYEGKELKKITIDIPVNFFGEAEIVGFTQFATDMVAKHLPSSVDVEVNVTTTDNQANASLITRDAGSKTANVHIFDR
>LT993737.1|SPN71219.1|643435_643726_+|glutamyl-tRNA(Gln)-amidotransferase-(subunit-C)
MSVISKAEVEKVASLARLEITEAEAEQYATQLEQIINMVEKLNELDTENIKPTTHAVPLTNVLREDVAAEGLDRNLVLKNAPDSQDGYIKVPSIMD
>LT993737.1|SPN71220.1|643748_645200_+|glutamyl-tRNA(Gln)-amidotransferase-(subunit-A)
MALFDLTIKELHQKLVNKEVTAVDLVNAVYARVDEVEEKVQAFITLTKEQALAEAAAIDAKGIDPDNVLAGLPIGIKDNIVTKDILTTAASKILTGFEPIYDATAMVKLHEKDMITVGKLNMDEFAMGSTTETSYYAKTANPWDLSRIPGGSSGGSAAAVAAGEVPVALGSDTGGSVRQPAAFCGVVGMKPTYGRVSRYGLIAFASSLDQIGPITRTVEDNALVLEAISGVDAHDSTSVPQPKADFTSEITKDIKGMKIAVPKEYLGDGVQDGVKARVLEAIETLKNLGATVDEVSLPHIEYGVAAYYVLASSEASSNLSRFDGVRYGYRSPDAHDLETLYTKSRAEGFGPEVKRRIMLGTFALSSGYYDAYYKKAQQARTMIIGDFEKIFADYDVIVGPTAPTIAFKSGDYAKDPITMYMNDVLTIPSNMAGVPSLSVPCGLSENMPVGLQIIGKQFDEATVYRVGHAFEQATNFNELKAEL
>LT993737.1|SPN71221.1|645213_646644_+|glutamyl-tRNA(Gln)-amidotransferase-(subunit-B)
MNFETVVGLEVHVELKTDSKVFSSSPAHFGAEPNTNTSVVDLGYPGVLPTLNKRAVEFAMKAGIALNCEINRETKFDRKNYFYPDNPKAYQISQFDKPVAKNGWIDIVVGGETKRIRIERVHLEEDAGKLNHEGNGYSLVDYNRQGTPLIEIVSEADMRTAEEAYAYLEAIKSIIQYTGVSDVKMEEGSLRCDANISIRPLGQEKFGTKTEIKNLNSFSYVRKGIEFEEKRQEKVLLAGGVIGQETRRFNEATGETLLMRVKEGSDDYRYFPEPDLVDLVIDDEWMAAVKAEIPELPGSRRARYINEWGIPSYDAMVLTLTKEMSDFFEATVANGAEAKQASNWLMGEVSAYLNAEQQELHDTALTPENLAGLIKLIEAGTISSKIAKKVFRDVITEGGNPEEIVKAKGLVQMSDAGELTKIITEIIDNNLQSVEDFKNGKDRAVGFLVGQAMKVTKGQANPKMVNQIIVDELNRR
>LT993737.1|SPN71222.1|646896_647589_+|putative-two-component-response-regulator
MAYRVLVADDDHDIRQAITIYLKNEGLEVSEAANGEEVLRIIANEEVHLLILDVMMPILDGLTTAIKLRENDENIPILMLSAKSEDIDKIHGLQVGADDYLEKPFNPLELMARVRAHLRRYTKLGTMEKPASVLTIEGLTLDQVTKIVTIEGQPLKMTPKEFQILALLMSHPNQVFSMEQIYEQIWKEVGFNIENTVSVHIRKIREKIEIDPKKPKYLKVVWGVGYKIEH
>LT993737.1|SPN71223.1|647566_649750_+|putative-two-component-sensor-histidine-kinase
MVTKSNIKTAIVLTILLTVICYTLIPLAMSHDLRERLVMDNDKAVVSNYNANNDYLVHDYTSELFLTALTQKNKDNTLNLTTADARELYDNEKANAAENTDDKSTEEMKLYRTKITEAQASGDTKRAKSLRSEFDAMIKTQYDYYFDDKKILAWANTKLLANLKEGRPSLADSKEEFDDTYYYYIFDTASKEILTNMPTIKASSSKADVQMELERLGANKNKEIIQTRTVKINLKDELNNESINLYKAPSAEYQTIFADKDLLANYSTYVKEVGQTKMITWLYVISGGLALIVLGWLVAKKQTLKIAPLFNLPLDIALIGTLFSGGLLIVVYRSTTAYELTPLILSGILMAIIVISSPRLYQAYRSETVRNELKSGVIGKWLENYQRLSLMMHVFCLIVMMCMSGALGLLIATQESPYVGLFVFSVLALLSLIMHMVYYHRVRETMKRPATIIQAATGEAIMQVSNKTVAEVNVDYERLEQLINQKIQKSEKSESLKTDLITNVSHDLRTPLTSIVTYSDLMQQPNVTLADQAAYAEVIQRKAQRMKQLIDDLFEVTKMDNGAIELNYTEVDLVALVKQSVGEYTEEFNSSSYLLRTTYPEQPIMVTIDSDKIWRVIDNLLQNTLKYTLPQSRIYVTVQDEMNQSRIIIKNISNYELNEAAPLLIERFKRGEQEKARDTEGHGLGLAIVQSIVSLHQGQLIVTVDGDMFKVQVVLPHKAAQESQFGL

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Crispr_ID: LT993737_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT993737_4

1353953-1354061

Orphan

Consensus_repeat	Method
TCTCGTAAAGCGGATAAATCCGCTACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT993737_4

>merge|LT993737|4|1353953-1354061|CRISPRCasFinder
TCTCGTAAAGCGGATAAATCCGCTACGATATTAGCAAAGGATTGGTACTCAATTTCTGGCGAAATTTCCGTCCCATACTGTTCTCGTAAAGCGGATAAATCCGCTACGA

>LT993737|4|4|1353953-1354061|CRISPRCasFinder
TCTCGTAAAGCGGATAAATCCGCTACGA	TATTAGCAAAGGATTGGTACTCAATTTCTGGCGAAATTTCCGTCCCATACTGT
TCTCGTAAAGCGGATAAATCCGCTACGA

Protein	Signature genes	Signature genes Name	Protein_function
LT993737.1\|SPN71941.1\|1364095_1364941_-\|conserved-exported-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|224429
LT993737.1\|SPN71929.1\|1349411_1350143_-\|ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
LT993737.1\|SPN71928.1\|1348418_1349303_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
LT993737.1\|SPN71926.1\|1346987_1347545_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
LT993737.1\|SPN71939.1\|1362743_1363259_-\|Putative-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
LT993737.1\|SPN71930.1\|1350254_1350392_+\|protein-of-unknown-function	unknown	unknown	unknown
LT993737.1\|SPN71924.1\|1345204_1345993_-\|phosphatidate-cytidylyltransferase-(CDP-diglyceride-synthase)	unknown	unknown	gnl\|CDD\|366491
LT993737.1\|SPN71936.1\|1358444_1361537_-\|putative-Nuclease-SbcCD-subunit-C	unknown	unknown	gnl\|CDD\|223496
LT993737.1\|SPN71927.1\|1347546_1348272_-\|uridylate-kinase	unknown	unknown	gnl\|CDD\|234735
LT993737.1\|SPN71935.1\|1357786_1358371_-\|Putative-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LT993737.1\|SPN71940.1\|1363432_1364038_+\|1-acylglycerol-phosphate-(1-acyl-G3P)-acyltransferase	unknown	unknown	gnl\|CDD\|153251
LT993737.1\|SPN71923.1\|1344048_1345188_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
LT993737.1\|SPN71932.1\|1353684_1353921_-\|protein-of-unknown-function	unknown	unknown	unknown
LT993737.1\|SPN71934.1\|1354660_1357786_-\|putative-SNF2-family-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|223627
LT993737.1\|SPN71933.1\|1354070_1354646_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|381602
LT993737.1\|SPN71938.1\|1362103_1362688_-\|Putative-nuclease-SbcCD-subunit-D-(fragment)	unknown	unknown	gnl\|CDD\|223497
LT993737.1\|SPN71942.1\|1364967_1365534_-\|Protein-LemA	unknown	unknown	gnl\|CDD\|377192
LT993737.1\|SPN71931.1\|1350453_1353153_-\|aconitate-hydratase-(aconitase)	unknown	unknown	gnl\|CDD\|236445
LT993737.1\|SPN71925.1\|1346015_1346783_-\|undecaprenyl-pyrophosphate-synthase	unknown	unknown	gnl\|CDD\|184840
LT993737.1\|SPN71937.1\|1361537_1362107_-\|Putative-nuclease-SbcCD-subunit-D,-C-terminal-domain-(fragment)	unknown	unknown	gnl\|CDD\|223497

Protein	Function_ID	Function_description	E-value
LT993737.1\|SPN71941.1\|1364095_1364941_-\|conserved-exported-protein-of-unknown-function	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.35927e-41
LT993737.1\|SPN71929.1\|1349411_1350143_-\|ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	1.77586e-173
LT993737.1\|SPN71928.1\|1348418_1349303_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.04735e-155
LT993737.1\|SPN71926.1\|1346987_1347545_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.28108e-102
LT993737.1\|SPN71939.1\|1362743_1363259_-\|Putative-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.81456e-32
LT993737.1\|SPN71924.1\|1345204_1345993_-\|phosphatidate-cytidylyltransferase-(CDP-diglyceride-synthase)	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.22944e-53
LT993737.1\|SPN71936.1\|1358444_1361537_-\|putative-Nuclease-SbcCD-subunit-C	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	4.62284e-72
LT993737.1\|SPN71927.1\|1347546_1348272_-\|uridylate-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	4.29065e-148
LT993737.1\|SPN71935.1\|1357786_1358371_-\|Putative-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.95401e-13
LT993737.1\|SPN71940.1\|1363432_1364038_+\|1-acylglycerol-phosphate-(1-acyl-G3P)-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	6.99516e-40
LT993737.1\|SPN71923.1\|1344048_1345188_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
LT993737.1\|SPN71925.1\|1346015_1346783_-\|undecaprenyl-pyrophosphate-synthase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	1.58078e-165
LT993737.1\|SPN71933.1\|1354070_1354646_-\|conserved-protein-of-unknown-function	gnl\|CDD\|381602	cd13399, Slt35-like, Slt35-like lytic transglycosylase. Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.7871e-27
LT993737.1\|SPN71938.1\|1362103_1362688_-\|Putative-nuclease-SbcCD-subunit-D-(fragment)	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	2.34418e-41
LT993737.1\|SPN71942.1\|1364967_1365534_-\|Protein-LemA	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	2.51838e-80
LT993737.1\|SPN71931.1\|1350453_1353153_-\|aconitate-hydratase-(aconitase)	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
LT993737.1\|SPN71934.1\|1354660_1357786_-\|putative-SNF2-family-N-terminal-domain-protein	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	6.53059e-94
LT993737.1\|SPN71937.1\|1361537_1362107_-\|Putative-nuclease-SbcCD-subunit-D,-C-terminal-domain-(fragment)	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	6.24954e-12

>LT993737.1|SPN71932.1|1353684_1353921_-|protein-of-unknown-function
MSLQGQYGTQRQRVPILQAIEYQSFKQLSTIPYVGIFIVLFYLSNYLSVVAFLSILNRGERSTFKNSILSILNKKTAA
>LT993737.1|SPN71931.1|1350453_1353153_-|aconitate-hydratase-(aconitase)
MLKHNDYMSEMTVDNEVYTYFDIASYCKDQLNDVTTLPYSIRVLLESVLRQFDGLIITEEHVEALSQWQPAVQPGEVPFKPARVILQDFTGVPAVVDLAAMRDALQKLGGNPEAINPEVPVDLVIDHSVQVDTYGTADALQRNMALEFKRNQERYEFLKWAQSAFDNYQAVPPATGIVHQVNLEFLARVVFEKEEAGKTILYPDTLVGTDSHTTMVNALGVLGWGVGGIEAEAGMLGQPSYFPIPEVVGVKLTNALPPGATATDLALKVTQVLREHGVVGKFVEFTGEGLATLTLSDRATVANMAPEYGATCGFFPVDNETLNYLALTGRKQRQIKVIESYLKENALFHDVTEEITYSSNVTIDLSEIAPNLAGPKRPQDLIPLTEMKESFETALVAPSGNQGFGLSKEESEREAVVKFDDGRQVTMPTGAVVIAAITSCTNTSNPYVLLSAGLLAKRAVELGLKVPDYVKPSLAPGSKVVTAYLDNAGLTPYMDELGFNLVGYGCTTCIGNSGPLLPEIEAAIQAEDLLVSSVLSGNRNFEGRIHPLVKANYLASPPLVVAFALAGRTAFDFETESLGTDKEGQPVFLRDIWPEKHEIEALVKEVVTPELFIEQYAQVFDDNDVWNAIETTDEASYDWNDDSTYIANPPFFDDLSMDIAPITDIKGGRVLAYFGDSVTTDHISPAGAIGKDTPAGQYLREQDVPIRSFNSYGSRRGHHDVMMRGTFANIRIRNKIAVGTEGGYTTYWPETKVTSIYEAAMAYKETQTPLVVLAGKDYGMGSSRDWAAKGPKLLGVQAVIAESFERIHRSNLVLMGILPMQYQPGDTAESLGLTGEETFDIEIDDNATVRQLVTVTATLGETVKKFQVIARFDSLIDVIYYRNGGILPLILRQKAVATV
>LT993737.1|SPN71930.1|1350254_1350392_+|protein-of-unknown-function
MDFNNTDNYITTFLIMQHLKSYQNAFYTQKAVYYNFFMKITEKCI
>LT993737.1|SPN71929.1|1349411_1350143_-|ribosomal-protein-S2
MAVISMKQLLEAGVHFGHQTRRWNPKMKKFIFTERNGIYIIDLQKTVKKVDEAFNFVKSIAEDGGRVLFVGTKKQAQESVKDEAIRSGQFYVNHRWLGGTLTNFGTIKKRVRRLKDIEKMAEDGTFEVLPKKEVVLLKKEQEKLERFLGGIKEMQDIPDALFIVDPRKERIAVQEARKLNIPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTGRMADAIIETKQGQEEVVEEAVATETVEG
>LT993737.1|SPN71928.1|1348418_1349303_-|elongation-factor-Ts
MAQISAAQVKELREKTGAGMMDCKKALVETNGDIDAAIDYLREKGISNAAKKADRIAAEGITNVLTDGNFAVLLEVNAETDFVAKNEGFQTVVKELSEHLLASKPADLEAALASEINAGETVETYITTAMNKIGEKLSLRRFVIMEKNETSAFGAYLHMGGRIGALTVIEGTTDEATAKDVAMHIAAVNPKYITRDEVAPEELAHEKEVLTQQALNEGKPANIVEKMITGRLNKFLSDISLVDQPFVKNPDVTVGKFVEEKGAKVLEFARFEVGEGIEKREENFAEEVMNQINN
>LT993737.1|SPN71927.1|1347546_1348272_-|uridylate-kinase
MNTPKYKRIVFKLSGEALAGEEGFGINPTVVNSIAKQVKEVVELGIEVAIVCGGGNIWRGKIGSEMGMDRANADYMGMLATVMNSLSLQDSLENVGVPTRVQSSIEMRQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFSTDTTAALRAAEIEADVILMGKNNVDGVYTADPKTDATATKFEELSYLEIISSGLEVMDTTASSLSMDNDIPLVVFSLNEEGNIKRAAMGEKIGTTVRGKY
>LT993737.1|SPN71926.1|1346987_1347545_-|ribosome-recycling-factor
MTKEILNSAKERMVGAEGALSRELANIRAGRANTSILDRITVEYWGAQTPLNQLAAISVPEARVLMIAPFDKGTLSDVERAIFASDLGLTPSNDGEVIRLTIPALTEERRKVLAKQVKSEAENAKVSVRNVRRDANDDLKKAEKAGDITEDELRQLSDEVQKYTDASIKKIDSITKDKEDEIMSV
>LT993737.1|SPN71925.1|1346015_1346783_-|undecaprenyl-pyrophosphate-synthase
MFNKLFNNNNGSDDIESQLSKENIPKHIAIIMDGNGRWANKRFLPRIAGHKEGMNTVKKITTSASKLGVEVLTLYAFSTENWKRPDEEVQFLMKLPVDFFETFMPDLMKENVRVHVMGYHDVLPKHTQKVITDAMDKTKNNTGLVLNFALNYGGRAEIVSATQAAMRELLAQELTPDDLTEELITKHLMTHTFPDPDLLIRTSGEMRVSNFMLWQIAYSEFYFVEKHWPDFSHQDLCEAIATYQNRTRRFGGILK
>LT993737.1|SPN71924.1|1345204_1345993_-|phosphatidate-cytidylyltransferase-(CDP-diglyceride-synthase)
MKTRIITAILALAVFVPFLVIGGTPFQAMMYLITTIAIGEVIRMQKRSLFAIDSILLFILGWVILLPTSILDRLAEYNISFILIVSVIVMMNLTASVLSADKVNVAQAALGIILSLYIAAGFRSFITVRSDSFNLLMFGILVVILTDSFAYFVGRKFGKTKLAPTISPNKTIEGSIGGTVIATIVAVIYTLIFPIDLSLLHIIIGTIVLSIVGQCGDLVESSVKRYCGVKDSGKILPGHGGLYDRFDSWLFVFPMMIILQFM
>LT993737.1|SPN71923.1|1344048_1345188_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKISLLGATGSVGVQTLAVVRQHPAAFQIVALAFGSNIQKGAQIIREFSPEIVSVATKDIARQLAHQFPTVTFYHGMAGLIEVATFHKSTMLVNAILGSRGLLPTLRAIESHKTIALANKETLVTAGHLVMDAVKKNNVTLLPVDSEHSAIFQSLQGNSKRAVDSILLTASGGSFRDKTREQLANVTLADALNHPNWAMGPKITIDSATLFNKGLEVIEAHWLFGLPYDKINVTIHRESIIHSCVNYVDGSMIAQMGAPDMRLPIQYALTYPNRLPISYDEPFDLNKIGQLSFEAVDMKRFRALYLSYEAGKAGGSMPTVLNAANEVAVEAFLTKKISFLDIENLVEKAMLAHSIIKNPELETILAIETETRQRVTSWL
>LT993737.1|SPN71933.1|1354070_1354646_-|conserved-protein-of-unknown-function
MTLMKRVVRAFGFLLFTVVFVTLLFGSFWQSQAIKIKGHIPKQYIETYKAAGKEYNIDWQLLAAVHRVETNFSRSKSMVSNAGAIGPMQFLPLTWVGWNYPGKNNEVTEKDLTDIKIIAKYGGYGVDGDGDGIADPMNAVDAIYSTANYLNKTKASIDRKHLKKAIFDYNHSDIYVRDILYYQDIYKELYK
>LT993737.1|SPN71934.1|1354660_1357786_-|putative-SNF2-family-N-terminal-domain-protein
MLSITHMRQDKEHDMIMATVKDTRVSYIVSAFHLNEKDPTYRCECREYESDPKTGCVHINKVIDELVQQKVIKPRPKNTTVSLINDFASDLAEDTYHYDFEKTERTPYELTYMLMPLFVSEADRKIAISLQIGKVGQTHYVIKDIRAFLKAWENDTYYIVNPRLTIEFKDILFSKAHQQILTDLSELARMARIYDTNDWSRTYAEEKQLTLTSEMMVRILKQMPMQLASFTYQDVSYPVQGFYENTKVPITLNHQFVEEGISFDFQEFEQLLLFEQEQLVFFDGSFYHFSEHTIKPFTIIKKWLKKTEETVHFVLQEDYSNFFSYILTSLEKITLIQLPEFEEMEVVHHPIHTVIEIAVIDNEHRLQVTHYYNDFGYDPFFDRWTPELSGEALFIRDTYAEHAVMRILEQAPLHVKKNTVLVSAKASERYVFYKYIVPLLREHAEIVMDESLENIITEMPVETYFNEDSQDGYVNFSVQFKDFEGDHSKSLIEHILEGELVYEDEEGRLISLESEEALALHALLRKMRIKPADWQQNQLRLSIYRALPLMQNRETQIHITDQLHDLMILMQSGDWDLEKVSEKLTGGTLQPHQIEGYSWLSLLSQYGLNGILADEMGLGKTIQTIAYICSLLDKYESFEPTLIVCPSSVVYNWQNEWSKFAPEIKAQIIDGNKVKRQEAIAEMKENQIYITSYAMLREDLQEYRQHHLGCFVLDEAQSLKNSRSLISQAAKHVKAKHKVALSGTPIENRSDDLWALFQIILPGYLPVLTQFKKLPPAEVKKLTAPFILRRLKQDILSDLPSLNETNLSIDLNSEQKRIYMQVINSLRVSLEEDKSEPQQRMQILAALTRLRQICDDPRLILEDYQGGSAKLDELLRIVTETAAEDKQMLIFSQFASMLPLIGQELEKLGIPYFLLDGKTNASKRMEMATAFNNSERTVFLISLKAGGTGLNLTGASRVILYDLWWNPAVEQQAAARAHRIGQTKDVDVVRIISKGTIEENIRDLQQSKLSLVDQILPSNEQKANININELKQLLFNTDKLS
>LT993737.1|SPN71935.1|1357786_1358371_-|Putative-acetyltransferase
MMRNAQKEDAKQIAPLLSVILRDIELPVFAQYKSDEELNNKIIPIIEGEESRYSYKNFYVYEQAGTILGFLCGYSGSDAARLDEPFKQYNASFNLPPDEVLFPDVETFPGEWYIDALVTSSEARGKGIGSALLNYANEVAAEAGETRIGLNCDQHNPKAGALYERLGFKTDGTLKIGDHMYNRMFRILPLRDDK
>LT993737.1|SPN71936.1|1358444_1361537_-|putative-Nuclease-SbcCD-subunit-C
MKPIELIIEAFGPYAKKQVIDFRELASEHIFLITGKTGAGKSTLFDAMSFALYGEANGDMRDSQSLRSDYADADTPTEVSLTFDTNGVRYRIVRRPQQLLNKKRGSGQRLISGEASLFKLESGTETVLGANIRDVQEAMAGIIPLTVTQFRQIMMIPQNEFRELLMSNSKDKEEILQKLADTAIYKKIQEQLFEKQRESEEVVKVIDRQLQGLRDDYHELAAADENLQQHSDIMAHLATLNQATLAALESTEMQKNSVEQRHTKIQQELAIAQTLIRQWEQREQVTTSLATLEEQAEEQSRQSHLLEQATAAQPIMAWISEQEKIKAAILEKEQLVKTAAEELTLLNSTTDQLTTTKAELEAKREQYLTTKAETAEWQRYLPAWQQLQSLQEQMNTIVKAQEANKEKFDRQVVLLETDNQLVVEAEKHVERAQGQETQRLLITQRMEEQQRWLQLYSEVDELLDASSRNTEAVGYLEQQLAKEVAKSERLQQERSNIIAEERQQLVAQIASQLQEGDACPVCGSESHPHIAEAAHLIDSEKALADIEQLMKGVLSQIEETKIQIRTKQFQIKQTAGHIAASYEKLNVTATTASEQYEWHVQALKDEQAELSALNYLLTYEEAKAKQQRLIANYNRHLEEKQALEVALKTAVAQIRGIASDRQRLEADTPPRPDDLKAVIKAVEEATQIISAFEAEEQSVSERVQANQIQLTKQTAALDSAEKALHTEQERLTEMTNSILEKQRAAGFNDQASFEAACLASEVFLELKEQVTAYQQKYAQLKEQLATLVGVLDGQTYPDIASIQNNLNLCNEERHVIEQRVRVYQQQAGQEEQLINGYRKQQAAIVSAESVYSQVSYLANVARGKNGSKLTFERYVLTAFLDLILEYANPRLRTMTDGRYQLQRQAELTKGNAQSGLELSVIDAYTSKTRHVKTLSGGESFKASLALALALADCIQELSGGMSLETIFIDEGFGTLDPDSLEQAIDMLLDTQANGRLVGIISHVPELKSRIHSKLVINQTAKGSTTHFSFN
>LT993737.1|SPN71937.1|1361537_1362107_-|Putative-nuclease-SbcCD-subunit-D,-C-terminal-domain-(fragment)
MSAKLFKAFDYTALGHLHRPHALGKITTDTLPQGTVSYSGSLLKYSFSEVKDQKSVRIITVPQKGELQMREVPLHPQRDMRLVKTEMAALLAEPTAFGPVDDYLQITLTDVGDVYEPMRRLKEVFPHLLHLERAAQTAIHQQGQQFKDLKQADILTLFSQFFETVEQQPLTDVDREFMQNVIDESRRGE
>LT993737.1|SPN71938.1|1362103_1362688_-|Putative-nuclease-SbcCD-subunit-D-(fragment)
MKIVHTADWHLGKIVSGQSLTEDQAYQLQQLVELLKDEAADVLMIAGDLYDRAIPPLEAVELLNETLATINLELKIPIVAISGNHDSSNRLNFGSSWYQKNGFYLTTQISQIFKPVTIGDVQFWLIPFFENLEAAAYFEDSTIRTQEAAMRRIIEQIEPLMDRSKRQIAMAHLFVTGAEPSESERPLAMGVLML
>LT993737.1|SPN71939.1|1362743_1363259_-|Putative-acetyltransferase
MITTERLFLREMTTKDFTDLCLILQDDKVMTAYEGAFNDTEVSDWLAKQQRNYRDHGIGLWAVILKENGRFIGQCGLTWQEVEGEHLLEVGYLFNADYWHQGFATEAAIACKKYAFKRLGADKVFSIIRDTNRASQAVALRNQMTPIKTIIKHYRQIDMPHTVYCVEKGGQ
>LT993737.1|SPN71940.1|1363432_1364038_+|1-acylglycerol-phosphate-(1-acyl-G3P)-acyltransferase
MFYNFARSIIAFCLLVINGRYTVQNRDKVIPAPFVLVSPHTSWLEILYLGVTIKPIKIHFMAKEELFHNKLFGKVLRGLKAFPVNRTNPGPSALKVPVKLLKDGNVLGIFPSGTRKNTHNQLKRGAVTIAKMAKVPIVPAYYDGPQNVKDWFKRHKVTIRYGEPIYMDDAKTKEALEEKSLLLVAAFEKLRLEVEASKKQK
>LT993737.1|SPN71941.1|1364095_1364941_-|conserved-exported-protein-of-unknown-function
MRKLNHPLFLVSILLIMLTSFVTLPVVHAAVKYPEQTKAFYVSDEAGILTTDTTKYMIDVNKNYESTKEKPQIVVATVDSLQGQEINDYAVKLFEKWKIGNKATDNGVLILFSKGDRNIHIEVGYGLEGALTDSGTGAILDNNMAALKSDDFDKALKGIFTEVAVKVNKEYEFNNDTIFAGYDVDTSVSEDNSSGFGGGIGIAILLIVILLALFSGRGGKGGSGGGNNVGTILWILSLLSNNNRGGGSGGGFGGGSGGGFGGGGSFGGGGSSGGGGSSRKF
>LT993737.1|SPN71942.1|1364967_1365534_-|Protein-LemA
MKSWMKIGIIIVAILAVVAIPVVSTYNSLVTVQNDVEEQWANVDSKLQRRFDLIPNLVNSVKGSMKQEKEVFGQIAEARTQYGSAKSTNEKVEASNQLDSALSRLLVVTENYPDLKSNENVTKLMDELAGTENRISVERDRYNKVVKDYNAKTKRFPGSIVAGMFGFEKMKFFEATAGADKAPTVDLD

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Crispr_ID: LT993737_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LT993737_5

1441988-1442089

Orphan

Consensus_repeat	Method
AGTATGGGACGGAGCGACAGCGAGTACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LT993737_5

>merge|LT993737|5|1441988-1442089|CRISPRCasFinder
AGTATGGGACGGAGCGACAGCGAGTACCACTCCTTTGCTAATATCGTAGCGAATTCATTCGCTTTACGAGAGTAGTATGGTACGGAGCGACAGCGAGTACCA

>LT993737|5|5|1441988-1442089|CRISPRCasFinder
AGTATGGGACGGAGCGACAGCGAGTACCA	CTCCTTTGCTAATATCGTAGCGAATTCATTCGCTTTACGAGAGT
AGTATGGTACGGAGCGACAGCGAGTACCA

Protein	Signature genes	Signature genes Name	Protein_function
LT993737.1\|SPN72031.1\|1453158_1454448_+\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|226068
LT993737.1\|SPN72018.1\|1436933_1437599_-\|putative-metal-dependent-HD-phosphohydrolase	unknown	unknown	gnl\|CDD\|224336
LT993737.1\|SPN72016.1\|1436002_1436728_-\|putative-phosphosugar-binding-transcriptional-regulator,-RpiR-family	unknown	unknown	gnl\|CDD\|224651
LT993737.1\|SPN72020.1\|1438399_1438903_+\|putative-ribosome-biogenesis-GTPase-RsgA-(fragment)	unknown	unknown	gnl\|CDD\|234988
LT993737.1\|SPN72029.1\|1449659_1451864_-\|putative-alpha-1,2-mannosidase	unknown	unknown	gnl\|CDD\|226067
LT993737.1\|SPN72025.1\|1445338_1445956_-\|putative-integral-inner-membrane-component,-YesV	unknown	unknown	gnl\|CDD\|227865
LT993737.1\|SPN72014.1\|1434311_1435793_-\|putative-PTS-system-beta-glucoside-specific-EIIBCA-component	unknown	unknown	gnl\|CDD\|273919
LT993737.1\|SPN72015.1\|1435826_1435955_+\|protein-of-unknown-function	unknown	unknown	unknown
LT993737.1\|SPN72013.1\|1432850_1434281_-\|aryl-6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
LT993737.1\|SPN72028.1\|1448520_1449450_-\|putative-ABC-transporter-permease-protein-YesP	unknown	unknown	gnl\|CDD\|226666
LT993737.1\|SPN72026.1\|1446093_1447566_-\|conserved-protein-of-unknown-function	unknown	unknown	gnl\|CDD\|378792
LT993737.1\|SPN72022.1\|1439998_1441105_+\|multiple-sugar-binding-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
LT993737.1\|SPN72024.1\|1443633_1445337_-\|putative-two-component-sensor-kinase-YesM	unknown	unknown	gnl\|CDD\|225519
LT993737.1\|SPN72021.1\|1438998_1439862_-\|putative-transcriptional-regulator-(regulates-yxkF-msmX-expression)	unknown	unknown	gnl\|CDD\|225306
LT993737.1\|SPN72027.1\|1447582_1448500_-\|putative-ABC-transporter-(permease)	unknown	unknown	gnl\|CDD\|223472
LT993737.1\|SPN72032.1\|1454472_1457178_+\|putative-alpha-mannosidase	unknown	unknown	gnl\|CDD\|223460
LT993737.1\|SPN72030.1\|1451867_1452941_-\|putative-transcriptional-regulator,-GntR-family	unknown	unknown	gnl\|CDD\|380491
LT993737.1\|SPN72017.1\|1436740_1436917_-\|protein-of-unknown-function	unknown	unknown	unknown
LT993737.1\|SPN72023.1\|1442165_1443641_-\|putative-two-component-transcriptional-regulator,-AraC-family,-YesN	unknown	unknown	gnl\|CDD\|227095
LT993737.1\|SPN72019.1\|1437876_1438416_+\|putative-ribosome-biogenesis-GTPase-RsgA-(fragment)	unknown	unknown	gnl\|CDD\|234988

Protein	Function_ID	Function_description	E-value
LT993737.1\|SPN72031.1\|1453158_1454448_+\|conserved-protein-of-unknown-function	gnl\|CDD\|226068	COG3538, COG3538, Uncharacterized conserved protein [Function unknown].	0
LT993737.1\|SPN72018.1\|1436933_1437599_-\|putative-metal-dependent-HD-phosphohydrolase	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	3.61956e-31
LT993737.1\|SPN72016.1\|1436002_1436728_-\|putative-phosphosugar-binding-transcriptional-regulator,-RpiR-family	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.23305e-55
LT993737.1\|SPN72020.1\|1438399_1438903_+\|putative-ribosome-biogenesis-GTPase-RsgA-(fragment)	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	9.98872e-71
LT993737.1\|SPN72029.1\|1449659_1451864_-\|putative-alpha-1,2-mannosidase	gnl\|CDD\|226067	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism].	0
LT993737.1\|SPN72025.1\|1445338_1445956_-\|putative-integral-inner-membrane-component,-YesV	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	2.85901e-30
LT993737.1\|SPN72014.1\|1434311_1435793_-\|putative-PTS-system-beta-glucoside-specific-EIIBCA-component	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	2.35514e-155
LT993737.1\|SPN72013.1\|1432850_1434281_-\|aryl-6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
LT993737.1\|SPN72028.1\|1448520_1449450_-\|putative-ABC-transporter-permease-protein-YesP	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	3.61579e-140
LT993737.1\|SPN72026.1\|1446093_1447566_-\|conserved-protein-of-unknown-function	gnl\|CDD\|378792	pfam12010, DUF3502, Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.	3.44644e-44
LT993737.1\|SPN72022.1\|1439998_1441105_+\|multiple-sugar-binding-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
LT993737.1\|SPN72024.1\|1443633_1445337_-\|putative-two-component-sensor-kinase-YesM	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.59011e-52
LT993737.1\|SPN72021.1\|1438998_1439862_-\|putative-transcriptional-regulator-(regulates-yxkF-msmX-expression)	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.34843e-16
LT993737.1\|SPN72027.1\|1447582_1448500_-\|putative-ABC-transporter-(permease)	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.65191e-72
LT993737.1\|SPN72030.1\|1451867_1452941_-\|putative-transcriptional-regulator,-GntR-family	gnl\|CDD\|380491	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.	4.76016e-58
LT993737.1\|SPN72032.1\|1454472_1457178_+\|putative-alpha-mannosidase	gnl\|CDD\|223460	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism].	0
LT993737.1\|SPN72023.1\|1442165_1443641_-\|putative-two-component-transcriptional-regulator,-AraC-family,-YesN	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.19261e-85
LT993737.1\|SPN72019.1\|1437876_1438416_+\|putative-ribosome-biogenesis-GTPase-RsgA-(fragment)	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	7.75174e-55

>LT993737.1|SPN72022.1|1439998_1441105_+|multiple-sugar-binding-transporter-ATP-binding-protein
MVQMALRNIYKKYDNSDGFAVTDFNLEIADQEFIVFVGPSGCGKSTTLRMVAGLEDISDGELYIGDKLMNEVAPKDRDIGMVFQNYALYPHMSIYDNMAFGLKLRKYSKAEIKQRVTDAADILGLTEYLERKPAALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVAMRAEIAKLHNRLKTTTIYVTHDQTEAMTMADRIVIMKDGFVQQIGSPKEVYNHPNNVFVAGFIGSPAMNFFNVELKNGYISTEGGDMNFHVPEGKYKVLKAQGYEGKKLVFGIRPEDIHNEPLVLETLAESTMDVEVVVSELLGAETMLYTKIEDTEFVSKVPARDDYEAGDIIKLAFNLSKAHFFDTETELVIK
>LT993737.1|SPN72021.1|1438998_1439862_-|putative-transcriptional-regulator-(regulates-yxkF-msmX-expression)
MTPTKLLTIYPTAKTGSNPLPAHINIPHETQYLSIPETDLTASEIALLTSLYQQEIVSKPSIKRSPWHAFLTGETAILPSVSAPVRCIYFDVRFADNTQQMGEWLNLFDALFEGRRTRFLLTETSGVLVEEKTTDALTDESLASILTVLDSDFYAHSSCVIGSYYDVSPQLPAYFIEEKRLFQVHLQHLTGDSVVNIPKLLFKEHASQMTADSVILQQLKEVLIAQPDTVSLIKELWKNEGNIAHTAQKLFIHRNTLLYRIQRFYEQTGLSLKSNEALFLCYLLVGV
>LT993737.1|SPN72020.1|1438399_1438903_+|putative-ribosome-biogenesis-GTPase-RsgA-(fragment)
MGAGFDRLNKRLVEHRTIALVGSSGAGKSTLLNYLAGEEIQTTSGIRDDDSRGRHTTTSRFLLPVGDAWIIDTPGMRELQLWADSESLDTTFTDIKELTANCHFNNCTHNNEPGCAVTAALTDGTLSTQRWAEYTKLQKELAYLERKANPVSQRQYMKAIIKKYKKK
>LT993737.1|SPN72019.1|1437876_1438416_+|putative-ribosome-biogenesis-GTPase-RsgA-(fragment)
MYTLEQLGWHTFFEDTLTEQERSRLARITVTGQNTYQALTLEGKINLKLTGSFSRTITTKFELPAVGDWVVTDETKQVIHRRLPRQTNFVRNIPGEKDERQVVAANIEEVWLAMSLNKDFNLKRLNRYVTTAWDSGAIPVIVLTKSDLVTDLEDYLAQVESEHMGIEIIACSALNGGWF
>LT993737.1|SPN72018.1|1436933_1437599_-|putative-metal-dependent-HD-phosphohydrolase
MMPTNAIKESCLLATEQHVKQLLAADTTGHDWWHIHRVRKLTLTLAKEEQADLFICEMAALLHDTVDDKLVADEKIAQTELLDWLFEQQLEENVVRQIMQIIADMSFKGGSNADKVLTLEGKVVQDADRIDALGAIGIARTMVYSGSKGRPMHLPNSQPRLNMTLAEYRNGEDTAIMHFYEKLLTLKDTMNTLTGKKLAEQRHLFLETYLEQFYAEWAGER
>LT993737.1|SPN72017.1|1436740_1436917_-|protein-of-unknown-function
MTKKRVRNIFFTLIILGLLIFQKQIGYTLSLVLAGIIIAYYIAEGIIRTRGSKHDQPK
>LT993737.1|SPN72016.1|1436002_1436728_-|putative-phosphosugar-binding-transcriptional-regulator,-RpiR-family
MFTYEIIQKFNSLELALYEYIQKHPREILYMTVRELADAVHVSTSTVMRFCKKTGCEGYTEFRFRFKMSLAKETEKRRESNSISEIMNYFKYIDNPVFDGKVNRIVSLVRDSNRIVFVGIGTSGAIGKYGARYFSMNGKFSHYIEDPFYPVMEELDHKTVVIALSVSGETEETVLLLDKLKQHSCQIVSITNQENATISRMSVETISYYMSNERIAGDYNTASQVPVIYIIEEIARRLPIK
>LT993737.1|SPN72015.1|1435826_1435955_+|protein-of-unknown-function
MLTSISYQNICENKAYSLIKTLVFHWEICYIKKTPCIFTAKK
>LT993737.1|SPN72014.1|1434311_1435793_-|putative-PTS-system-beta-glucoside-specific-EIIBCA-component
MAINYTKSAKEIIKAVGGDENINSLTHCATRLRFILNDDKIVNKDEVNKIEGVITTMEAGGQFQVVIGNHVKDVYELIMQDIKVDDSKASNSNNKNKVGVFSRIIDVISSIFAPFLYTLAACGILQGLLGVMVALGWLDTAGGTYRILNFVSWTGFTFLPVLIAITAAKKFGANIYVAVVTACALVNPDFMKMFAANDFLNNASADPKVQSMITQATNNPDTMKLINDVLGIPVLSQPLDFLGLPIKMLSYTSSVIPIILAIWILSYVQRFFERILPSVIRNLFTPLLSLVIIVPMTLLVFGPVGSTIGGAIGDVYNFLYGLSPIIAGAIVGGFWEVLVIFGVHWGITPVTVGNYASLGYDTFTALQASAVFAQAGAALGVFFKSRDSAMRGVALPAAITGFFGITEPAIYGVTLRLKTPFIMGCIAGAVGGAIAGAFRSVSWAYNMPGIATLPAFFKSGHATEFIGLLISIVVAFVLGLVLTYVVGFKEEAK
>LT993737.1|SPN72013.1|1432850_1434281_-|aryl-6-phospho-beta-glucosidase
MTKLNDDFLWGGAVAAHQVEGAWNVGGKGPSIADVLTGGAHGVDRIITTEIEDKYRYPNHEAVDFYHTYKEDIALFAEMGFKCFRTSIAWSRIFPKGDETEANEAGLQFYDDLFDELLKYGIEPVVTLSHFEMPNHLVTAYGGWKNRQVIDFFVHYSEVVMRRYQKKVKYWMTFNEINNQKSFKAPLFGYTNSGVIFNDAEKPEETMYQVVHHQLVASAKVVTIGHEINKDMQIGCMIAVVPLYPYSCHPDDMMLSVESMHDRYLFGDVHVRGEYPSYAYKEWERKGFNIEITAEDSAALRAGTVDYVGLSYYMTNTVRAGVKGEGTATAGFEGSVPNPHVKVSDWGWQIDPVGLRYALNLLHERYQLPLFIVENGFGAIDTPEADGTINDDYRIAYLKAHIEEMTKAVTLDGVDLMGYTPWGCIDCVSFTTGEYKKRYGFIYVDKHDDGSGTMARSKKKSFNWYKEVIASNGENL
>LT993737.1|SPN72023.1|1442165_1443641_-|putative-two-component-transcriptional-regulator,-AraC-family,-YesN
MYKLLLVDDEYMILNGLKKIINWENMGIEISGTAKNGQEALDFIREHPVDIVITDVTMPAMSGIEFVQQAQKEGYRFHFIIMSGYQEFSYVKEGLVLGAENYLVKPVDKSELLKNVESIVEKISMIETSNSGQPQQFQTLIQEWLNLPNVTENFVTEMATYGYTIENERYTALIFKGLEKHHGFLMDLVKKNKQPYFFFQEDIFMIVFRGLKYELRDFLRQLRELLKEADFKLGLGKTEVPYTEVVHSYEQAQQVLTLCSFYELSGVQQLKRLLASLDESEVPQEISLDKLHHALTLGKMTTIEAEVQAIFTLMYEQEMTPSYVTHISFLILADIYRRFNQADQVAYQEALLEISTIKTFQKLQKIIETSIKQVEREIDVKQFSPNIQHVLQIIMERYRTDLTLKEVAEQLHLNAMYLGQLFKKETKKSFSQYLNQYRITKAKDLLLHSDYNINEISEKIGYTSTGYFYKNFKNVSGISPRDYRQQFGNEE
>LT993737.1|SPN72024.1|1443633_1445337_-|putative-two-component-sensor-kinase-YesM
MKQTNLMNTLLRIYAVVMIIIITLFTLIVGYTIFQTYVEDAQKDNEQTANFLTDTVNNLEQQTDLIVDNLLNDSKSIENLYEYFNLGHAEYLRATLKREGTEQRYWPQMVKQLYQLQTGIGGIQVSLNDFDETYYSNQSKKAGEKIKALPQPKNQLVISKPITQTESINSTGTFSLIADEAMIKNIITSMSGARQQQILIYSQTDQLMYSYTGNKVTKPLDARKDLKSIISLKENVLDDNYFMTQNASGANLKVVVLTPKNIIYEAAFKNYSWILMGSLLLDGILLIILFRTFGAYSRQVEDILVTMNHVTDSNLSVRINEENKQRELKEIAVGINLMLDDINQQVKDIYLLEIEQKDAHMRALQSQINPHFLYNTLEYIRMYAVSEGVDELAEVVYSFASLLRNNTMQEKTVTLQRELEFCEKYVYLYQMRYPDRIAYHFTVDSEIDDVMVPKYIVQPLIENYFVHGIDFSRIDNAISVKVYRKNTSVVIDVIGNGKGMSDERLTEVNRLLVEDVSKKRHQTSIGLMNVSDRLKLVFGDNATMVLYHNLSGGVIVRLTFEEEITDV
>LT993737.1|SPN72025.1|1445338_1445956_-|putative-integral-inner-membrane-component,-YesV
MIGEMLENVFIRCYVIIKLNLYFILLTVMGLIVVGIGPAFLTINQLFTEHEWDYKKITWKNAWLTYKQNWKRGNALFGIYAGLSLFIGYNLYLSVQVQGILFLVIDFLLVFVLFCLFVTYSYSLVLHSRFDMGLANLIKLAFITFYSNFFMLVKLIFGIGIVLFITYKFPGLIMFATMALIQIICIFTAKQWVSIIEDKLAADGE
>LT993737.1|SPN72026.1|1446093_1447566_-|conserved-protein-of-unknown-function
MMKKWSKVVATSLVTVLAVGALAGCGSLSGDKKAKTTDKGDTPTLLMYQIGDKPKNYDQLMEIANKRIEDKIGAKVNIQYIGWGDYEQKMSVIVSSGENYDIALAKNYVTNAQKGAYADLTKLLPEKAEAAYKMLDESYIKGNTIDGKMYAFPVNANIFSQQMLTFNKKFVDKYNLDISKVKTYADVEPLLETIKEKEPKVMPIAVGQGFRAEAGFDFALGNGLPFGVDLNGDTKKIINPFEEKGMMTAYQTLHDFYKAGYIAKDASTSNTEYPLDSSTWFARQETQGPFDYGDTILTQAAGQELVSKAISVPLKTTQAAQMASFVVSSGSKNIDKSVEFLGLLNSDPELLNGLVLGVEGEAWEKVGDDRSKLLEGYQPNMHMAAWNTANNKILYADETITDKQIEARDKSIEDAIESPILGFVFNTETVKNEISNLNNVMSQYLDGLNTGTLDPTVAVPEMNKKLETAGFSKVQKEMQKQYDAFMAEAK
>LT993737.1|SPN72027.1|1447582_1448500_-|putative-ABC-transporter-(permease)
MRKKKIQKVGVRSFGKKADIFFNVFLALFALSCVFPFLFVIIISLTSENSLVTNGYSLWPSEWSLDGYRYLADLKEQLLQSLFVTVMVTVVGTLINTTFTSTYAYAISRPDFILRKFFTIACLITMLFSAGMVPNYIVMTSMLGLKDTIWALILPMAISPFNIIVMRTFFKRTVPDAIIESARIDGASELRIFGQIVLPLAVPGIATISLFAALGFWNDWFNALLYIQSDNLVPLQYLLMKIQANIEYMTQNASMSTALSSGAQAIPKEATRMAMVVISTLPIALSYPFFQKYFVSGLTIGGVKE
>LT993737.1|SPN72028.1|1448520_1449450_-|putative-ABC-transporter-permease-protein-YesP
MKKKLKKCYKHRALIFMALPGFIWMIFFFYIPVLGNIVAFKDFRYSPDGFLASLKNSPWIGFDNFKFLFSSSDAYLITRNTLLYNIAFILIGLVCAILFAVVLSEIRSRKMIKIYQTSMLLPYFLSWVIIGYFVYAFLSPDKGLLNSMITSFGGEAINWYNEPKYWPFILIVLGVWKSVGYSSIIYFAAIMGINPTYYEAAMVDGATKWQQIRHVTLPQLIPLITILSILSVGNIFKADFGLFYQVTRNSGVLYEVTSVLDTYVYNGLANTGDIGMAAAAGLYQSVVGCVLLIAANAVVRKLDDSSALF
>LT993737.1|SPN72029.1|1449659_1451864_-|putative-alpha-1,2-mannosidase
MLHIEDLLQIDTRQGTNNQHTFSHGNCLPYTGVPFGMNHFVVQTADQRGSWYFNPHDRTFQGIRLTHQPSPWMGDFSQLLLAPTAGHVVKSDLFHHQSSYRTEEAVFSPFYLKVKQERYQITTEFSPTTYGGVLQSRYLKNSQPGLFIRSQGPSEIAVDVANKTVRGYITNASGSEDKDFKMYFTLRFDQAIDAATTGYYTDDALVPSTTYAGTDPIFDIRFPAAETLTTHLATSFLSQDQADLNLSRIENDSFDTIKQAAADKWLSYLNKIEIENRNKEQIKTFYACLYRTCLFPQKFYELDEANQPQHYNTLAKKVQPGYLYTNNGFWDTYKTVYPLYSLIAHEEYEEMLQGYLQSYREAGFLPKWLSPDERGMMPGTLIDAVIADAAVKGLATDLMPEFLEGMLAGATTKSASGNYGRRGTLDYLKYGYVPLDYHESVNHTLDYAYSDFCISQVARVLGKGDIQAKYQKQSRNFLNIFDANTGFMRAKDKEGNFRHDFKHDRWGLDYAEGSTWQNGFATYHDFAALIAAYGGERAFFDKLTTLCNTPPTYGVEGYGFEIHEMSEMAAVDFGQVALSNQPSFHLPYLFNYVGKPASTQVVVKQLMTELFNAGWDGFPGDEDNGSMSGWYIFSILGFYPVCPGSGEYVLGIPLFDKATVHLANGKTLVVEAAGNQAHTNFVSEIALNETPHTALAIQHESLMAGGNLKFTMALAPVDREYSNAEKPFSLTTNH
>LT993737.1|SPN72030.1|1451867_1452941_-|putative-transcriptional-regulator,-GntR-family
MKQPLYQQILNDLKADITAGTYLPEDKLPTELELSERYGVSRITSKRALVELENEGMIYRLRGKGSFVCAKDGLTEEKTVAKTDILFIMPFPHNAGLGDYTQGMLRCLEETSYRLQVQPHQYLSSTDVAEIVAQYAGIIYYPTNNSSDLELLYGLHLNALPTVLLDKEFESLPFSAVVADNQQGGFEATQHLIAQGHQQVAFVSTEHLGEVSSVRERYFGYMKALHAAGATQPIHLKKTGTEEVSVYLEQVTRQLLDQGITGVIAENDIIAIQLINTMKQMGYQVPADFAVVGFDNIQAASLLEPSLTTISQKFEEMGTIASQTLLAEISQPTQVKEKHIVPVELIVRKSSQIESGG
>LT993737.1|SPN72031.1|1453158_1454448_+|conserved-protein-of-unknown-function
MTYTTVPTSVQQFMDDMTKRAEAENPRWAEIFNKCFANTLLTTVKRFDDGSTFLLTGDIPAMWLRDSTAQVRPYLAIAKEDDDLQAMIAGLVKRQFRYINLDPYANAFNEEANNAGHQTDHTEMNPWIWERKYEIDSLCYPIQLAYLLYKETGRRDQFDASFESGITEILKVWETEQNHDQSPYTFERDTTRVEDTLTHDGRGTPVGTTGMTWSGFRPSDDVCKYGYLVPSNMFAVVVLSYLEEIYTDLLPQPDVVARVTKLKNEIDAGIKEYAQVANAAGETVFAFEVDGLGNHSIHDDSNVLSLMAAPYLGYCAQDDPIYLATRKTLLSSENPYYYEGKNAKGIGSSHTPENYIWPIALAIEGLTTSDKADKKRILDMLVDNDGGTNLMHEGFDVNDANNYTREWFSWANMMFCELLMDYYDIKITA
>LT993737.1|SPN72032.1|1454472_1457178_+|putative-alpha-mannosidase
MTTKKVYIISHSHWDREWYMAYEQHHMRLVALMDDLLHLFKTNPDFHSFHLDGQTIAIDDYLEVRPEKREEVQAAITAGKLKIGPFYILQDDFLISSESNTRNMLVGLEESRKWGDPVMLGYFPDTFGNMGQAPQMMKEGGIEAAAFGRGVKPTGFNNVVINDEKYTSQFSEMWWEGADKSKIFSLLFANWYSNGNEIPVEKEAAQAFWKEKLADAEQFTSTDHILMMNGVDHQPVQMDVTDAIKVANNLYDDYEFIHSSFDEYLEAVMNDVPADLSTVSGELTSQETDGWYTLANTASARIYLKQKNTDVQRQLENITEPLATMAFDVTGEYPHDQLRYAWKLLMQNHPHDSICGCSVDEVHREMITRYDKALEVGKFLASEAVESLTASIDTSLFPTDSKPFVVFNTAGSAKTGTIETEIEWKRLPFSQGVPEELYAQLKNETLPELTVIDAKGQPVTAEILSHEVRFNYDLPKDAFRVPFMAIYVKVRLVVTDMPAVSWESLALTVGQNTTSALPTIVSEADNRLENEFLHVKVESNGQLTVTDKTTGITYPNVLTYENVGDIANEYIFKQPEGDQAIYAHDFPATTTVAINTTKIGEITLTQTLMIPVSADETLAEKMKAVVEMRQRKAQRSKELAPFTLTTKIRLEQGSRQLKFSTHFDNQMKDHRLRVLFPTNITTDKHYAESIFEVVERPNGVSASWENPTNPQHQHSFVNVQDATHGMTVSNYGLNEYEILADNTTIALTLHRSVGELGDWGYFPTPEAQCMGEQTVAFALAFHGADDQNRTFHDGQNFQIPFTVAQTSVHNGRWAPKAAYLTIDSSAYALTALKRKEHQTEIVTRGFNLSNTAPAPLEIKISGYTPTRCTLIETPHEKPLSAILEPAEINSLLWTKSASVND

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LT993737_2	2.1\|635438\|29\|LT993737\|CRISPRCasFinder	635438-635466	29	NZ_CP041067	Bacillus megaterium strain KNU-01 plasmid pKNU_01_3, complete sequence	65135-65163	7	0.759

1. spacer 2.1|635438|29|LT993737|CRISPRCasFinder matches to NZ_CP041067 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_3, complete sequence) position: , mismatch: 7, identity: 0.759

ttcgtcattttaaacattaacataagaaa	CRISPR spacer
actaccattttaaacattaatattagaaa	Protospacer
 ....***************.** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31000 : 40789

Bacillus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPN70625.1\|31000_32755_+	ABC membrane transporter (ATP-binding protein) required for cytochrome bb' function	W8CYL7	Bacillus_phage	4.1e-23	23.5
SPN70626.1\|33226_33850_-	putative transcriptional regulator (fragment)	A0A0A7AQV8	Bacillus_phage	6.1e-06	48.1
SPN70627.1\|34038_34473_-	putative transcriptional regulator (fragment)	A0A0S2MVM8	Bacillus_phage	1.6e-05	42.4
SPN70628.1\|34934_36722_+	DNA polymerase III (gamma and tau subunits)	A0A1U9WR94	Streptococcus_virus	1.0e-53	36.4
SPN70629.1\|36738_37059_+	DNA binding protein	NA	NA	NA	NA
SPN70630.1\|37150_37747_+	DNA repair and recombination protein	NA	NA	NA	NA
SPN70631.1\|37768_38011_+	conserved protein of unknown function	NA	NA	NA	NA
SPN70632.1\|38244_38907_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.1e-53	48.8
SPN70633.1\|38908_39238_+	signal transduction receptor, cyclic di-AMP binding	NA	NA	NA	NA
SPN70634.1\|39298_40789_+	di-tripeptide-proton ABC symporter	A0A0P0IY73	Acinetobacter_phage	7.1e-77	36.0

DBSCAN-SWA_2

411017 : 420510

Lactococcus_phage(16.67%)

integrase

attL 415069:415092|attR 431397:431420

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPN70986.1\|411017_413384_+	ribonuclease R	Q0GXV6	Lactococcus_phage	6.4e-88	36.9
SPN70987.1\|413983_414451_+	tmRNA-binding protein	W5RAM5	Staphylococcus_phage	9.8e-49	65.5
415069:415092	attL	NA	NA	NA	NA
SPN70988.1\|415096_416245_-\|integrase	putative phage integrase	Q938N9	Temperate_phage	1.2e-58	36.4
SPN70989.1\|416309_416852_-	putative HTH-type transcriptional regulator ImmR	L0P7E1	Lactobacillus_phage	3.9e-09	47.5
SPN70990.1\|416997_417192_+	putative HTH type transcriptionnel regulator	NA	NA	NA	NA
SPN70991.1\|417343_417610_+	conserved protein of unknown function	NA	NA	NA	NA
SPN70992.1\|417685_417994_+	conserved protein of unknown function	NA	NA	NA	NA
SPN70993.1\|417990_418257_+	protein of unknown function	NA	NA	NA	NA
SPN70994.1\|418352_419123_+	putative Bifunctional DNA primase/polymerase	A0A286QQQ4	Streptococcus_phage	2.0e-22	32.7
SPN70995.1\|419109_420510_+	putative DNA primase	A0A2H4J1M0	uncultured_Caudovirales_phage	4.0e-29	31.0
431397:431420	attR	NA	NA	NA	NA

DBSCAN-SWA_3

621962 : 633922

Synechococcus_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPN71201.1\|621962_623150_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	9.5e-32	31.3
SPN71202.1\|623170_623527_+	nitrogen-regulated PII-like regulator protein	NA	NA	NA	NA
SPN71203.1\|623903_624392_+	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.7e-19	40.1
SPN71204.1\|624384_625506_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
SPN71205.1\|625522_626824_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.5e-22	32.8
SPN71206.1\|626992_627715_+	phosphoribosylaminoimidazole succinocarboxamide synthetase	A0A0E3FUQ7	Synechococcus_phage	4.9e-39	39.0
SPN71207.1\|627717_627972_+	factor required for phosphoribosylformylglycinamidine synthetase activity	A0A1D8KKU6	Synechococcus_phage	9.4e-06	36.1
SPN71208.1\|627968_628649_+	phosphoribosylformylglycinamidine synthetase I	NA	NA	NA	NA
SPN71209.1\|628638_630858_+	phosphoribosylformylglycinamidine synthetase II	A6N228	Microbacterium_phage	5.7e-155	41.3
SPN71210.1\|630842_632276_+	glutamine phosphoribosylpyrophosphate amidotransferase	A0A0M3SGR2	Mollivirus	9.6e-55	35.1
SPN71211.1\|632289_633330_+	phosphoribosylaminoimidazole synthetase	A0A0E3F760	Synechococcus_phage	6.1e-59	43.8
SPN71212.1\|633334_633922_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-17	31.9

DBSCAN-SWA_4

1094386 : 1102872

Staphylococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPN71661.1\|1094386_1095004_+	putative ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-21	36.2
SPN71662.1\|1095319_1095628_-	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	4.8e-20	55.1
SPN71663.1\|1095694_1096189_+	putative 8-oxo-dGTP diphosphatase YtkD	NA	NA	NA	NA
SPN71664.1\|1096518_1097715_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	8.6e-150	70.4
SPN71665.1\|1097801_1098488_+	uracil-DNA glycosylase	A0A0B5IW78	Pandoravirus	1.0e-46	43.0
SPN71666.1\|1098584_1100486_+	asparagine synthetase / meso-diaminopimelic acid amidotransferase	A0A1V0SGM7	Hokovirus	6.6e-27	29.3
SPN71667.1\|1100611_1101001_+	conserved protein of unknown function	NA	NA	NA	NA
SPN71668.1\|1101082_1102099_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	9.3e-28	26.4
SPN71669.1\|1102296_1102872_-	putative RNA methylase (YtqB)	A0A2H4PQV0	Staphylococcus_phage	1.2e-35	44.4

DBSCAN-SWA_5

1556464 : 1564944

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPN72144.1\|1556464_1557289_-	ammonium-dependent NAD+ synthetase	G3MA24	Bacillus_virus	8.5e-72	55.5
SPN72145.1\|1557304_1558798_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	8.9e-112	46.8
SPN72146.1\|1559071_1559452_+	large conductance mechanosensitive channel protein	NA	NA	NA	NA
SPN72147.1\|1559706_1561134_+	putative peptidoglycan LysM binding protein	Q9ZXE4	Bacillus_phage	1.0e-19	42.4
SPN72148.1\|1561319_1562195_-	GTPase possibly involved in regulator sRNA degradation	A0A0R8VB27	Thermobifida_phage	2.3e-06	28.8
SPN72149.1\|1562218_1563949_-	alpha-phosphoglucomutase	A0A1X9I671	Streptococcus_phage	1.9e-145	46.5
SPN72150.1\|1563978_1564944_-	putative glycosyltransferase	U5P087	Shigella_phage	6.3e-66	42.5

DBSCAN-SWA_6

1631032 : 1646459

Brochothrix_phage(66.67%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SPN72218.1\|1631032_1631872_-	putative Lysozyme (Muramidase)	B7SSN6	Bacillus_phage	3.3e-39	57.3
SPN72219.1\|1632052_1632865_-	putative N-acetylmuramoyl-L-alanine amidase CwlA	D7RWK6	Brochothrix_phage	2.1e-91	62.4
SPN72220.1\|1632868_1633144_-\|holin	putative phage holin (fragment)	D7RWE6	Brochothrix_phage	8.3e-32	79.5
SPN72221.1\|1633156_1633378_-	conserved protein of unknown function	Q77MU0	Lactococcus_phage	3.0e-08	38.4
SPN72222.1\|1633377_1633548_-	conserved protein of unknown function	D7RWE4	Brochothrix_phage	8.8e-08	50.9
SPN72223.1\|1633547_1633853_-	protein of unknown function	S4V993	Staphylococcus_phage	1.3e-06	34.9
SPN72224.1\|1633852_1635484_-	protein of unknown function	D7RWE2	Brochothrix_phage	1.4e-38	49.4
SPN72225.1\|1635510_1637586_-	protein of unknown function	W6E9L3	Staphylococcus_phage	3.9e-81	35.8
SPN72226.1\|1637598_1640337_-	protein of unknown function	D7RWE0	Brochothrix_phage	0.0e+00	73.8
SPN72227.1\|1640333_1641101_-	conserved protein of unknown function	D7RWD9	Brochothrix_phage	4.3e-78	56.5
SPN72228.1\|1641221_1642502_-	membrane protein of unknown function	D7RWD8	Brochothrix_phage	1.4e-76	48.6
SPN72229.1\|1642516_1642804_-	conserved protein of unknown function	D7RWD7	Brochothrix_phage	6.0e-25	60.9
SPN72230.1\|1642863_1643211_-	conserved protein of unknown function	D7RWD6	Brochothrix_phage	5.9e-51	88.7
SPN72231.1\|1643292_1643817_-\|tail	Putative phage tail protein	D7RWD5	Brochothrix_phage	1.2e-63	74.4
SPN72232.1\|1644366_1644858_-	putative phage encoded transcriptional regulator, ArpU family protein	D7RWH7	Brochothrix_phage	1.8e-37	50.3
SPN72233.1\|1644905_1645139_-	protein of unknown function	D7RWH2	Brochothrix_phage	2.2e-17	64.2
SPN72234.1\|1645411_1645609_-	Predicted transcriptional regulator	A0A1X9I583	Streptococcus_phage	7.1e-09	50.0
SPN72235.1\|1645793_1646459_+	Predicted transcriptional regulator	A0A2I7SCV6	Paenibacillus_phage	9.7e-26	36.6

DBSCAN-SWA_7

1818730 : 1861539

Listeria_phage(38.46%)

protease,holin,capsid,terminase,integrase

attL 1818356:1818377|attR 1860132:1860153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1818356:1818377	attL	NA	NA	NA	NA
SPN72408.1\|1818730_1819552_-	putative N-acetylmuramoyl-L-alanine amidase CwlA	D7RWK6	Brochothrix_phage	5.6e-140	94.9
SPN72409.1\|1819553_1819952_-\|holin	putative holin; skin element	D7RWK5	Brochothrix_phage	3.5e-63	100.0
SPN72410.1\|1820019_1820253_-	conserved protein of unknown function	D7RWK4	Brochothrix_phage	2.3e-30	98.7
SPN72411.1\|1820254_1820695_-	conserved protein of unknown function	D7RWK3	Brochothrix_phage	2.4e-73	97.9
SPN72412.1\|1820694_1823535_-	putative surface protein of unknown function	D7RWK2	Brochothrix_phage	0.0e+00	92.7
SPN72413.1\|1823547_1825893_-	conserved protein of unknown function	A0A1I9KKS3	Lactobacillus_phage	8.7e-37	24.9
SPN72414.1\|1825905_1827600_-	putative phage related protein	A0A059T682	Listeria_phage	9.6e-70	31.6
SPN72415.1\|1827650_1833212_-	putative phage related protein	A0A1Q1PW35	Staphylococcus_phage	4.1e-69	43.8
SPN72416.1\|1833226_1833370_-	putative phage related protein	NA	NA	NA	NA
SPN72417.1\|1833417_1833762_-	protein of unknown function	NA	NA	NA	NA
SPN72418.1\|1833830_1834268_-	putative phage related protein	A0A1D6Z291	Staphylococcus_phage	2.6e-19	47.8
SPN72419.1\|1834321_1834909_-	putative phage related protein	A0A059T7Y4	Listeria_phage	8.6e-26	35.4
SPN72420.1\|1834955_1835348_-	phage protein Gp10	A8ATA3	Listeria_phage	7.7e-31	50.8
SPN72421.1\|1835344_1835746_-	phage protein Gp9	A0A059T5F3	Listeria_phage	1.4e-32	50.4
SPN72422.1\|1835742_1836105_-	phage protein Gp8	A8ATA1	Listeria_phage	4.6e-38	66.9
SPN72423.1\|1836088_1836376_-	phage protein Gp7	A0A059T7R0	Listeria_phage	2.9e-19	50.5
SPN72424.1\|1836448_1837591_-\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	7.2e-146	66.9
SPN72425.1\|1837616_1838378_-\|protease	phage protein Gp4, Clp protease-like protein	A8AT97	Listeria_phage	6.9e-60	56.9
SPN72426.1\|1838377_1839556_-	putative phage related protein	A0A1W6JPQ9	Staphylococcus_phage	1.9e-85	42.3
SPN72427.1\|1839577_1841221_-\|terminase	putative terminase large subunit	A0A059T7Q8	Listeria_phage	6.4e-236	70.0
SPN72428.1\|1841217_1841523_-\|terminase	putative terminase small subunit	A0A059T7Y1	Listeria_phage	2.1e-20	49.0
SPN72429.1\|1841674_1842004_-	putative phage related endonuclease	A8ATF8	Listeria_phage	1.3e-34	67.3
SPN72430.1\|1841969_1842386_-	protein of unknown function	NA	NA	NA	NA
SPN72431.1\|1842400_1842640_-	phage protein Gp4	D7RWP7	Brochothrix_phage	2.9e-12	46.8
SPN72432.1\|1842656_1843055_-	putative phage related protein	U6E9D1	Streptococcus_phage	2.3e-30	55.0
SPN72433.1\|1843075_1843198_-	protein of unknown function	NA	NA	NA	NA
SPN72434.1\|1843276_1843627_-	protein of unknown function	NA	NA	NA	NA
SPN72435.1\|1844139_1844547_-	putative sigma factor	Q2I8C1	Bacillus_phage	6.1e-15	39.1
SPN72436.1\|1844543_1844729_-	protein of unknown function	NA	NA	NA	NA
SPN72437.1\|1844834_1845092_-	protein of unknown function	NA	NA	NA	NA
SPN72438.1\|1845088_1845850_-	putative phage related protein	A0A0E3TA88	Enterococcus_phage	1.8e-15	56.9
SPN72439.1\|1845846_1846158_-	phage related protein	D7RWG8	Brochothrix_phage	4.2e-48	95.0
SPN72440.1\|1846158_1846341_-	phage related protein	D7RWG7	Brochothrix_phage	3.6e-23	90.0
SPN72441.1\|1846341_1846758_-	phage related protein	D7RWN3	Brochothrix_phage	2.4e-46	64.3
SPN72442.1\|1846754_1847171_-	conserved protein of unknown function	NA	NA	NA	NA
SPN72443.1\|1847133_1847490_-	phage related protein	A0A1X9I642	Streptococcus_phage	1.7e-29	64.8
SPN72444.1\|1847758_1850068_-	putative phage related primage	Q8W5V7	Listeria_phage	5.4e-233	54.4
SPN72445.1\|1850092_1850605_-	putative phage related protein	R4ICE5	Listeria_phage	5.5e-45	51.5
SPN72446.1\|1850654_1851149_-	putative phage related protein	NA	NA	NA	NA
SPN72447.1\|1851161_1852442_-	putative phage related helicase	Q8W5V9	Listeria_phage	1.2e-125	57.9
SPN72448.1\|1852395_1852545_-	protein of unknown function	NA	NA	NA	NA
SPN72449.1\|1852489_1853176_-	Phage nucleotide-binding protein	A0A059T7T3	Listeria_phage	1.3e-89	68.0
SPN72450.1\|1853188_1853668_-	phage related protein	W8CYU7	Bacillus_phage	1.8e-26	42.8
SPN72451.1\|1853683_1853884_-	protein of unknown function	NA	NA	NA	NA
SPN72452.1\|1853933_1854140_-	protein of unknown function	NA	NA	NA	NA
SPN72453.1\|1854140_1854314_-	protein of unknown function	NA	NA	NA	NA
SPN72454.1\|1854318_1854588_-	putative excisionase (fragment)	NA	NA	NA	NA
SPN72455.1\|1854653_1855385_-	putative phage related regulatory protein, Rha family	A0A0P0IDD0	Lactobacillus_phage	2.8e-26	57.8
SPN72456.1\|1855608_1855878_-	protein of unknown function	NA	NA	NA	NA
SPN72457.1\|1855941_1856154_-	putative phage related Cro-like repressor	NA	NA	NA	NA
SPN72458.1\|1856324_1857029_+	putative phage related repressor	O64370	Lactobacillus_phage	1.5e-21	34.0
SPN72459.1\|1857051_1858014_+	conserved protein of unknown function	D7RWC7	Brochothrix_phage	2.3e-12	83.0
SPN72460.1\|1858006_1858771_+	putative phage related protein conferring self-immunity to the host	X5JB37	Clostridium_phage	6.3e-29	42.1
SPN72461.1\|1858888_1859026_+	protein of unknown function	NA	NA	NA	NA
SPN72462.1\|1858890_1860036_+\|integrase	putative phage related integrase	A0A1P8BMN3	Lactococcus_phage	4.4e-66	40.6
SPN72463.1\|1860135_1861539_-	dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes	A0A2K5B2C5	Erysipelothrix_phage	1.4e-45	27.9
1860132:1860153	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LT993737

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection