CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483305	Staphylococcus sciuri subsp. sciuri strain NCTC12103 genome assembly, chromosome: 1	2 crisprs	csa3,cas3,DEDDh,DinG,WYL	6	0	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483305_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483305_2

1030800-1030958

Orphan

Consensus_repeat	Method
TGCGGGAGTATTTCAACTTTTAGAATACATTCCTTCCCGGAATGAGATATAGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483305_2

>merge|LS483305|2|1030800-1030958|CRISPRCasFinder
TGCGGGAGTATTTCAACTTTTAGAATACATTCCTTCCCGGAATGAGATATAGGTGCAAGTCCTATCTTCCGCTCCATTATTATTAATACTGCTATTTATTAAAATGCGGGAGTATTTCAACTCTTAGAATACATTCCTTCCCGGAATGAGATATAGGTG

>LS483305|2|2|1030800-1030958|CRISPRCasFinder
TGCGGGAGTATTTCAACTTTTAGAATACATTCCTTCCCGGAATGAGATATAGGTG	CAAGTCCTATCTTCCGCTCCATTATTATTAATACTGCTATTTATTAAAA
TGCGGGAGTATTTCAACTCTTAGAATACATTCCTTCCCGGAATGAGATATAGGTG

Protein	Signature genes	Signature genes Name	Protein_function
LS483305.1\|SQE50100.1\|1018273_1019368_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226614
LS483305.1\|SQE50112.1\|1035706_1037002_+\|Neu5Ac-permease	unknown	unknown	gnl\|CDD\|224509
LS483305.1\|SQE50102.1\|1020834_1021293_+\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|224146
LS483305.1\|SQE50106.1\|1031414_1031630_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|237343
LS483305.1\|SQE50099.1\|1016650_1018237_+\|glutamate-synthase	unknown	unknown	gnl\|CDD\|223147
LS483305.1\|SQE50104.1\|1022330_1022783_+\|transcription-regulator-Fur-family	unknown	unknown	gnl\|CDD\|223806
LS483305.1\|SQE50109.1\|1033113_1034064_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380496
LS483305.1\|SQE50110.1\|1034224_1035226_+\|Neu5Ac-binding-protein	unknown	unknown	gnl\|CDD\|270389
LS483305.1\|SQE50114.1\|1038467_1040561_-\|Alpha-xylosidase	unknown	unknown	gnl\|CDD\|269885
LS483305.1\|SQE50113.1\|1037017_1038424_+\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|376859
LS483305.1\|SQE50105.1\|1022808_1023234_-\|Protein-of-uncharacterised-function-(DUF2614)	unknown	unknown	gnl\|CDD\|371346
LS483305.1\|SQE50098.1\|1014844_1016584_+\|ABC-type-multidrug-protein-lipid-transport-system-ATPase-component	unknown	unknown	gnl\|CDD\|224055
LS483305.1\|SQE50111.1\|1035218_1035707_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-protein-yiaM	unknown	unknown	gnl\|CDD\|225632
LS483305.1\|SQE50107.1\|1031690_1032656_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380509
LS483305.1\|SQE50108.1\|1032782_1033085_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|227327
LS483305.1\|SQE50103.1\|1021298_1022252_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
LS483305.1\|SQE50096.1\|1013116_1014148_+\|HhH-GPD-superfamily-base-excision-DNA-repair-protein	unknown	unknown	gnl\|CDD\|224115
LS483305.1\|SQE50115.1\|1040701_1041754_+\|Membrane-protein	unknown	unknown	gnl\|CDD\|226167
LS483305.1\|SQE50101.1\|1019463_1020750_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
LS483305.1\|SQE50097.1\|1014228_1014777_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|184219

Protein	Function_ID	Function_description	E-value
LS483305.1\|SQE50100.1\|1018273_1019368_-\|membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.20795e-62
LS483305.1\|SQE50112.1\|1035706_1037002_+\|Neu5Ac-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	6.17603e-125
LS483305.1\|SQE50102.1\|1020834_1021293_+\|AhpC/TSA-family-protein	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	2.39181e-68
LS483305.1\|SQE50106.1\|1031414_1031630_-\|Uncharacterised-protein	gnl\|CDD\|237343	PRK13304, PRK13304, aspartate dehydrogenase.	0.000288458
LS483305.1\|SQE50099.1\|1016650_1018237_+\|glutamate-synthase	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	7.1258e-137
LS483305.1\|SQE50104.1\|1022330_1022783_+\|transcription-regulator-Fur-family	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	4.24397e-53
LS483305.1\|SQE50109.1\|1033113_1034064_-\|transcriptional-regulator	gnl\|CDD\|380496	cd06272, PBP1_hexuronate_repressor-like, ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and close homologs, all members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.2621e-65
LS483305.1\|SQE50110.1\|1034224_1035226_+\|Neu5Ac-binding-protein	gnl\|CDD\|270389	cd13671, PBP2_TRAP_SBP_like_3, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.4742e-129
LS483305.1\|SQE50114.1\|1038467_1040561_-\|Alpha-xylosidase	gnl\|CDD\|269885	cd06599, GH31_glycosidase_Aec37, E.coli Aec37-like. Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	0
LS483305.1\|SQE50113.1\|1037017_1038424_+\|glucuronate-isomerase	gnl\|CDD\|376859	pfam02614, UxaC, Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyzes the reactions: D-glucuronate <=> D-fructuronate and D-galacturonate <=> D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.	0
LS483305.1\|SQE50105.1\|1022808_1023234_-\|Protein-of-uncharacterised-function-(DUF2614)	gnl\|CDD\|371346	pfam11023, DUF2614, Zinc-ribbon containing domain. This is a family of proteins conserved in the Bacillaceae family. Some members are annotated as being protein YgzB. The function is not known.	6.62656e-63
LS483305.1\|SQE50098.1\|1014844_1016584_+\|ABC-type-multidrug-protein-lipid-transport-system-ATPase-component	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
LS483305.1\|SQE50111.1\|1035218_1035707_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-protein-yiaM	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	3.61635e-32
LS483305.1\|SQE50107.1\|1031690_1032656_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380509	cd06286, PBP1_CcpB-like, ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. Catabolite control protein B (CcpB) is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.	5.81882e-90
LS483305.1\|SQE50108.1\|1032782_1033085_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|227327	COG4994, COG4994, Uncharacterized protein conserved in bacteria [Function unknown].	2.51406e-13
LS483305.1\|SQE50103.1\|1021298_1022252_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	2.45821e-140
LS483305.1\|SQE50096.1\|1013116_1014148_+\|HhH-GPD-superfamily-base-excision-DNA-repair-protein	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.94201e-134
LS483305.1\|SQE50115.1\|1040701_1041754_+\|Membrane-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.38766e-84
LS483305.1\|SQE50101.1\|1019463_1020750_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
LS483305.1\|SQE50097.1\|1014228_1014777_+\|Putative-cytosolic-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	9.11255e-124

>LS483305.1|SQE50105.1|1022808_1023234_-|Protein-of-uncharacterised-function-(DUF2614)
MKLFRKKPTSKINRIRSFALGLIFLGMIVMYIGVFFFYYFKSQIVFSIFLVLGMLALGLSFIVYFWIGMLSSRTIQVQCPNCDHYTKMLGRADICANCNQPLTLDKNLEGKAFNQDYNNKRKSKKLEEQQTEEHAEEKKKS
>LS483305.1|SQE50104.1|1022330_1022783_+|transcription-regulator-Fur-family
MQQNIENVEHMLDDAIGTLRSTGVRITPQRQSILQYLIETDSHPTADEIYQSLSPQFPNMSVATVYNNLKVFKETGLVKELTYGDASSRFDFETHNHYHIICDQCGKISDFHYPRLDEVEQLAQHVTSFSVTHHRMEIYGVCPECQNKNK
>LS483305.1|SQE50103.1|1021298_1022252_+|phosphoglycerate-dehydrogenase
MKVVTLMRLKEQEERLKETFPNVDFIFYKHPNEARDEDLEDVDILVSYHGEVNPSFLDKCKNIKLIAWFATGVNQLPLDYIQDRGIKLTNARGVHAIQIAEFIFAYILNDIKLFRTSYESQKKREFNHKLKPDSINEKTILFLGTGKIPQRTAEVAKAFNMKVIGINTTGHVVPGFDEVYSIEERRHVYHKADFIVNVLPETEETIHLLQKEDFKQMNEDTHFINVGRGTVVSESVLYEALSSKDIRYASIDVFEEEPLPENSLLYDLDNVFITAHITGNDLNNLKRSTDILIENLKHIKNDASDKLINIVNAEAGY
>LS483305.1|SQE50102.1|1020834_1021293_+|AhpC/TSA-family-protein
MIQIGEKFPDFNLKNQNGELISNEDLKGSKVVVYFYPRDNTPTCTTEACDFRDNLEDFNELNTKVYGISGDSEKKHANFFNKHNLNFDLLVDEDYKLSEEVGVYQLKKSFGKESMGIVRTTFVLDEEGTVIHKIDKVKVKTQIEDLKNFIKE
>LS483305.1|SQE50101.1|1019463_1020750_-|glutamate-1-semialdehyde-2,1-aminomutase
MEFTKSEYLQTLSNEYILGGVNSPSRSYKAVGGGAPVVMQKGKGAYFYDVDGNKYIDYLQAYGPIIAGHAHPHITEAIKAAAEDGVLFGTPTEYEITFAKKLRNAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRDKIIKFAGCYHGHSDLVLVAAGSGPSQLGTPDSAGVPKSVAQEVITVPFNDIDSFKEAMEHWGDQVAGVLVEPIVGNFGMVEPKEGFLEAVNEVTHQYGGLVIYDEVITAFRFHYGAAQDLLGVYPDLTAFGKVIGGGLPIGAYGGRQEIMEHVAPLGPAYQAGTMAGNPLSMRAGIALLEILEQPGVYDKLDQLGQQLEEGLLELIKKHNVKATVNRIKGALTLYFTDEKVENYVQAENTDGEQFAKFFKLMLNQGINLAPSKYEAWFLTTEHTEEDINQTLNAVDYAFSQL
>LS483305.1|SQE50100.1|1018273_1019368_-|membrane-protein
MKFGARIFKTGIAIVLAIFIANLLPGPAMITSIAGVAAMVAMQPSVYRSFKTIVEQFQGNVIGAITAVAIFSIFGNNVVFIGLTAIIIISILYKFNLQHVSNLAVVTALIILGHHEGDFYISAFYRFVLVMIGVLSAFLVNFTFLPPKFETKMYYNSLNISTDIFKWFRLVLNGTTEFHYVKQDLETIRTRIVKLEQFYLYYKEERAYTKKQAFSQMRKKILFKEIIASTRRAYEVLRKMNRYENDIHNLNDDLKVQMKFELDELMAQHEQILVRISQKAKHEIDQVPDYLVEPYKEDLMEIFIKDIMDNPDQEDYYIENVMQVISAMLDYKATILHLDKLSSSYFKFHPEDSDIQIEDEDFDL
>LS483305.1|SQE50099.1|1016650_1018237_+|glutamate-synthase
MTFLSILQLIVNILFFVIIIGGIIACISLYVIDKRQKHHSVLRNYPVLGRVRYFLESIGPELRQYLILNDNAGKPFSRKQYLNIVMPGKYKNRIESFGSLRKFEEPGFYLQNTMFPVDHDELEINQDEQMSTFIYEISNEGLFDRKEEQKQKDVDPYKLTSDNQIIIGDDLKHPFIVNRLIGQSGMSYGALGKNAITALSKGLGRSGSWMNTGEGGLSDHHLSGGCDIIFQIGPGLFGVRDKEGNFDETEFIEKANMNQVKAFELKLAQGAKTRGGHIEGAKVTEEIAEIRNVTPFETVNSPNRFEFLHNNKELLQFVQRLRELSDKPVGIKLVVGNINDLKKLIHEMVSSNIIPDFITVDGGEGGTGATYQELVDTVGLPLFSALPILDVELKKFKIRDKVKVFASGKLITPDQIAIALALGADLVNVARSLMINVGCIMAQQCHTNNCPVGVATTDPKKESALVVSEKEYRVSNYIVSLHEGLFNLAAAVGVKSPNQINENHLLYRSANGNVMNVKQYKKSIYKEQ
>LS483305.1|SQE50098.1|1014844_1016584_+|ABC-type-multidrug-protein-lipid-transport-system-ATPase-component
MIKRYLQFVKPYKWHIVGTIIIGILKFGIPLLLPLLIKYVIDDVINNGALSIGQKTEKLTYAMLIMGFIFVVLRPPIEYFRQYLAQWTSNKILYDIRKKLYTHLQALSSRFYANNKAGEVISRVINDVEQTKDFILTGLMNVWLDLVTIVIALSIMFVLDIKLTFTAIAIFPVFIFSIYYFFGKLRSLTRRRSQSLAELQGFLHERVSGMSVIKSFAIEKNEEKRFDKRNQNFLTKATDHTKWNAKSFAVINTVTDIGPLLVVGIGGFLVIQGNLTVGTLAAFVAYLEQLYGPLRRLVSSSTTLTQSIASMDRVFHLFDEKYDVKNEDDAQDIVIKEGHITFDDVSFKYNDYEDEVLKHINLDINKGETVAFVGMSGGGKSTLISLLPRFYDVTKGSISIDNHNVKDFTTESLRNQVGMVEQDNILFSDSIKENILLGKPDASDEEVIEASKKANAHDFIMSLPNGYDTEVGERGVKLSGGQKQRVSIARIFLNNPPVLVLDEATSALDLESEKIIQDALEILSTERTTLIVAHRLSTITHADKIVVIQNGQIEEVGSHKELMAAQGSYYNLYNIQSFG
>LS483305.1|SQE50097.1|1014228_1014777_+|Putative-cytosolic-protein
MVKESIPKEGQVIKIQSYKHDGNIHRVWSETTILKGTSHVIIGGNNRTLVTESDGRTWVTREPAIVYFHSEYWFNVICMFREDGVYYYCNLSSPFVCDEEAIKYIDYDLDIKVYPSGKYHLLDEDEYKQHMKQMNYPKDIDVILRRNVDILQQWIERKKGPFAPDFIKVWQERFHSIDRRNS
>LS483305.1|SQE50096.1|1013116_1014148_+|HhH-GPD-superfamily-base-excision-DNA-repair-protein
MIETKQFKDDLLNWFHKNKRQMPWRETSNPYYIWLSEVMLQQTQVNTVRPYYKAFIERFPTIESLSEANEEDVLKYWEGLGYYSRVRNFQEAVKEVHHSYHGVVPDNPDDFKKLKGVGPYTNAAVMSIVHNHPIPAVDGNVLRVWSRLTGNDSDIAAPKTKKLYEDELQPFVEEHSGDFNQAMMELGATICTPKKTLCIMCPVQKHCYAFANGVVEELPVKKKKIKKKTIDFNVLYITNRSGEILVRQRDTKLLNGMWEFPMFEADESIHSIEETLDAVIDIDQTPEFTTKHVFTHMTWNMNVYRAHTQKSEFDYPYKWIKKEEKDQLSFSTSMSKIFNQLNG
>LS483305.1|SQE50106.1|1031414_1031630_-|Uncharacterised-protein
MNKQKVGIDGCNITSEIYVEILQHTSNIDIVACTDESLSKAISMKNKYDIPQVMTRSKMYKDKKIDYIIKL
>LS483305.1|SQE50107.1|1031690_1032656_-|LacI-family-transcriptional-regulator
MTNLKEVAKRAGVSPSTVSRVINNHPYVNEEKRQKVLDTIEELNYIPNINAIHLKKGKTNLIGVVLPFSNHPYFSQLIQGISEEAIKSNKKIVLFQTAYDTDQEIDALEMLKLKQIDALIICSRNISLNIVEQYIEYGPISIFENISNSKFRTTYIDHYNAFKQALNHLYNNGHRHIACAINRRNSTSSILRIQAYKDFCSENSITYNDQDIYENFVLLEDGQRLAQEIENKENPTTAIVVSGDNTAAGLFISLDEEKKKNISIIGFENHKISKLLNLTTIEIPLFQIGKSLFNQLYEDKLNNYLFETKLIKRNSVFKLNH
>LS483305.1|SQE50108.1|1032782_1033085_+|Uncharacterized-protein-conserved-in-bacteria
MDASNREDKSFIINLLDDDFKEIGKSGRMIYKRDIEENTLHTFDYEISDFIVEKIQKGIVLTTYELINKTDHISTKRSTLWIRKQSEWKMRFHQGTIVKK
>LS483305.1|SQE50109.1|1033113_1034064_-|transcriptional-regulator
MAVTLKDIANACGVSYSTVSKALKNSPLVTAETTERIQQKAKEMNYIPNNSARSLVSNKSQTIGLIWPSVDRVAVSTLVSEINNFLKNTGYFMSVSIDDVETAAHKFLELRFDGIIVFDEGEASTLPSIISSNIPVVAYGTDRKLEYPIVNVNHKHAMILSLDDLMQNNITNICYIGDLNTDDIRQIIKKETFEHYCKEHHLNYNMIDSKGLSAEDTFFALKSYLTNHTLPEGIICGSYDITLGLIHTLKDSLDQHIVYSYDNVPQFDHMDTVIHSVGVPTKKIAETLVNILINAIEYKENQPDVYHLEPELVKRK
>LS483305.1|SQE50110.1|1034224_1035226_+|Neu5Ac-binding-protein
MKKILLLIVSVFIVLYGCQQSDAQDKDVKTLTLAHNQSTTHPVHKSLEEFKKEVERKSHGKLKIKIYANGQLGSEREAIEMTQTNAIQFTKVSASALESFSESYSLFSMPYLFKSQDSFRSIMKKPEVQNSFFNTTKDNGFVGITYYDAGLRNIYTKDREIKTNKDLHGLKTRVQPSKTSVELIKSLGGTPTPMAFGEVYTALQSGVIDAAENNETALTDNKHGEVAKNYYNTEHAIVPDILIMNKDAYNDLSKEEKGWIKSAARSSTEKHEVIWDKAIKEGIKTAKEDMNVKFHDVDKSSFKKAVKPLQEEFKNNKGTEKQYKLIKEAEQNE
>LS483305.1|SQE50111.1|1035218_1035707_+|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-protein-yiaM
MNKLTHYIDRTLLSVSGVLVTVMVILSVWQVITRYILNTPSTTSEEIIRFLLIWFALLSAAYVFGKKKHIAILFIREKFPVKAQLFIERLTNIIILLVALILMIYGGIKIVALTWTQIAPSTGVSMALMYGALPISGLFIAFYSIRGIITNELPENDEGGEV
>LS483305.1|SQE50112.1|1035706_1037002_+|Neu5Ac-permease
MTTIAGIVLFVSLAVFLAFGIPIAISIILSSLLTLILIFPFDVTILTAAQRMITGIDNFTMLAIPLFVLAGILMNNGGIAFRLINFAKVLVGRLPGSLAHTNIVGNMLFGSISGSSVAAAAAMGRIMTPMETTQGYKKSYSAAANIASAPSGLLIPPSSLLIVYSLVSGGTSIAALFIAGYIPGILWGLGCMVVAYFLAKKHGYPVSEKVSWKDKLFLTLDAIPSLLLIIIVIGGIVAGIFTATEGAAVAVLYAFILSLIYRNLKIKDIPAIIIETVEITGMILFLITASALFSLVMSFTGLPEAISGGILSLTENPILLLLLMNLILLIVGTFMDITPAVLIFTPIFLPIADSIGLDPIHFGIVIAFNLCIGNITPPVGSALFVGSSVANVRIESVIKTLIPYFIILIILLLLITFVPQLSLFLPKLLGL
>LS483305.1|SQE50113.1|1037017_1038424_+|glucuronate-isomerase
MSMIQENFIVQSKKGQALYKVAKDIPIFDFHCHLDPKEIYENKPFTTITEVWLKHDHYKWRLMRAYGIDESYITGDKSDKEKFDAFISLLPKSIMNPMYHWCHLELARYFNINENLNKIDKEQLYNQLNESLQQPEFLPRKLIERSNVQIICTTDDPCDDLKYHQLLREDKSFDVKVLPTFRPDRYIALTKDNVEASINQLENATGTRINHLEEYINALNERIEYFHQNGARSSDQSFAKVLKVDVTKEQADQYFEQIKQGEDLDEEDLSRLSGYILTEVSKTYKKYNWVVQFHLGPVRNNNTLLFEEVGPDAGFDSVGDMLSSSDLNRFLDHLNQNDALSDTIIYPNNANDHLMVQATAGNFTSDKVKVQLGAAWWFNDTKEGMEQHLVEYANVGLLSTFVGMLTDSRSLLSYTRHEYFRRILCEMIGKRVERGEIIDDDEILSEIIKDICFNNAVTLYNIEGVDAI
>LS483305.1|SQE50114.1|1038467_1040561_-|Alpha-xylosidase
MFNMISQDKNTIVISDKQNEHFFTIRILEDYLINIKSSTQKDISLPTWTITPGDTDLPFEGLSRYDQSNFSCPQYEISEEQHNIIIETKLLKLIIDKEDFYCSWYDLSSSDKEIKIMQDRQTGSYHHQISKNHPTCHYLNRDKNEMYFGLGEKSGKVNKHGRRYRMKNIDAMGYNAETTDPLYKHIPYYLTYNTDENIAFGIFYDDYQDSIVDLGQELDNYHGHYRYYETKSDFLDYYVIAGPSIQQVTTRFSHLTGRPTLMPEWSLSYSGSTMQYTDLPNSDERLLSFLNQCNTHNITIRSFHLSSGYTSIHDKRYVFNWNYDKFKDPKSFGKAYTDQNVELVANIKPTLLTDHPLLDEVLAIDGFIKDMNGKPLLVQFWDEKGYYLDFTNKDTIKWWQSKIEQQLLSNHVNCTWNDNNEFEIWDDKAIVNGFGNEANFQDYKAIMPILMMKASREIQQKYHKEEYPYIISRSGAAGMSKYVQTWTGDNYTSWHTLKYNNAMAIGLSLSGVYNFGHDIGGFSGDKPEAELFLRWVQCGAYYPRFSIHSWNDDGTVNEPWMHQKVLSEVKQAMHFHEKLKPYLQSLVIQAHESYEPIIRPTFYQYENDITTFVENDEFMLGEHMLIAPIVEKSQQERTIYLPNNNKGWIDFHSGKQFEGGQTITVKTTLQHIPTFVVKGAEIPVYKDDLKTIENLKF
>LS483305.1|SQE50115.1|1040701_1041754_+|Membrane-protein
MDKHFTVKEFFFNILNGIGVGIVIALIPNAILGVLFSYLSQFHPLLEMFNQALLLMQFAMSFIIGIVVAHQFKFQATDAVMIGAAGLIGSGAVKIQNGQFIFVSIGDVVNLIVVLIISCYLMIKLKGKFGSLDMLIMPIIISVVSGFIGMLTLPYVSNVTKGIGKLIEQFSTLNPLMMCILIAITYALLMVTPISVVAIATAVGLNGLSSGAGNMGIVAACVTFLMGSWKVNEKGINIVLIIGAAKMMIPVYFKNPIIAVPLIVNGLMSGLLTYFIGIKGTPMSTGFGYTGFVGPANALKFMEGSVFLNILILGVAYFVIPFVFAYIVHKVCLKILPKYNQEMFLFKENN

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Crispr_ID: LS483305_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483305_3

2105673-2106054

Orphan

Consensus_repeat	Method
CAAAACTCGGNCGAAGTGTTAC	CRT

9 spacers

The CRISPR arrays of LS483305_3

>merge|LS483305|3|2105673-2106054|CRT
CAAAACTTGGCTGAACTGTTACTAAGGGCGGCTATATTTACAAAACTCGGTCGAAGTGTTACTATGGGCGGCTATAATTACAGAACTCGGTCGAAGTGTTACTAAGAGCGGCTATATTTACAAAACTCGGTCGAAGTGTTACTACAGACCGCTATATTTACAAAACTCGGCCGAAGTGTTACTAAGAGCGGCTATATTTACAAAACTCGGTCGAAGTGTTACTAAGGATACCCATAGTTACAAAACTCAGCCGAAGTGTTACTACAGACCGCTATATTTACAAAACTCGGCCGAAGTGTTACTAAGAGCGGCTATATTTACAAAAATCGGTCGAAGTGTTACTAAGGATATCCATAGTTACAAAACTCAGCCGAAGTGTTAC

>LS483305|3|1|2105673-2106054|CRT
CAAAACTTGGCTGAACTGTTAC	TAAGGGCGGCTATATTTA
CAAAACTCGGTCGAAGTGTTAC	TATGGGCGGCTATAATTA
CAGAACTCGGTCGAAGTGTTAC	TAAGAGCGGCTATATTTA
CAAAACTCGGTCGAAGTGTTAC	TACAGACCGCTATATTTA
CAAAACTCGGCCGAAGTGTTAC	TAAGAGCGGCTATATTTA
CAAAACTCGGTCGAAGTGTTAC	TAAGGATACCCATAGTTA
CAAAACTCAGCCGAAGTGTTAC	TACAGACCGCTATATTTA
CAAAACTCGGCCGAAGTGTTAC	TAAGAGCGGCTATATTTA
CAAAAATCGGTCGAAGTGTTAC	TAAGGATATCCATAGTTA
CAAAACTCAGCCGAAGTGTTAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483305.1\|SQE51141.1\|2098040_2099006_-\|oligopeptide-transport-system-ATP-binding-protein-OppF	unknown	unknown	gnl\|CDD\|224048
LS483305.1\|SQE51154.1\|2111310_2112156_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
LS483305.1\|SQE51140.1\|2096182_2097853_-\|oligopeptide-ABC-transporter-periplasmic-oligopeptide-binding-protein	unknown	unknown	gnl\|CDD\|173869
LS483305.1\|SQE51139.1\|2094437_2096093_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
LS483305.1\|SQE51155.1\|2112162_2113494_+\|coenzyme-A-disulfide-reductase	unknown	unknown	gnl\|CDD\|184103
LS483305.1\|SQE51156.1\|2114081_2115503_-\|oligo-1,6-glucosidase	unknown	unknown	gnl\|CDD\|200451
LS483305.1\|SQE51143.1\|2100093_2101164_-\|Oligopeptide-transport-system-permease-protein-oppC	unknown	unknown	gnl\|CDD\|224094
LS483305.1\|SQE51151.1\|2109783_2109975_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483305.1\|SQE51149.1\|2106280_2108878_-\|clpB-protein	unknown	unknown	gnl\|CDD\|274529
LS483305.1\|SQE51145.1\|2102471_2102843_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483305.1\|SQE51157.1\|2115656_2116001_-\|Protein-of-uncharacterised-function-(DUF1516)	unknown	unknown	gnl\|CDD\|237465
LS483305.1\|SQE51150.1\|2109048_2109741_+\|carD-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
LS483305.1\|SQE51153.1\|2110485_2111298_+\|hydrolase	unknown	unknown	gnl\|CDD\|319818
LS483305.1\|SQE51146.1\|2102906_2104151_-\|3-oxoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|274452
LS483305.1\|SQE51142.1\|2099005_2100079_-\|oligopeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
LS483305.1\|SQE51158.1\|2116207_2117113_-\|fumarylacetoacetate-(FAA)-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
LS483305.1\|SQE51144.1\|2101163_2102090_-\|oligopeptide-transport-system-permease	unknown	unknown	gnl\|CDD\|223674
LS483305.1\|SQE51152.1\|2110056_2110365_-\|PaaD-like-protein	unknown	unknown	gnl\|CDD\|225062
LS483305.1\|SQE51147.1\|2104165_2105107_-\|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASIII	unknown	unknown	gnl\|CDD\|236475
LS483305.1\|SQE51148.1\|2105293_2105497_+\|Protein-of-uncharacterised-function-(DUF2929)	unknown	unknown	gnl\|CDD\|371396

Protein	Function_ID	Function_description	E-value
LS483305.1\|SQE51141.1\|2098040_2099006_-\|oligopeptide-transport-system-ATP-binding-protein-OppF	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	1.52919e-126
LS483305.1\|SQE51154.1\|2111310_2112156_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.0236e-91
LS483305.1\|SQE51140.1\|2096182_2097853_-\|oligopeptide-ABC-transporter-periplasmic-oligopeptide-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LS483305.1\|SQE51139.1\|2094437_2096093_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LS483305.1\|SQE51155.1\|2112162_2113494_+\|coenzyme-A-disulfide-reductase	gnl\|CDD\|184103	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.	0
LS483305.1\|SQE51156.1\|2114081_2115503_-\|oligo-1,6-glucosidase	gnl\|CDD\|200451	cd00551, AmyAc_family, Alpha amylase catalytic domain family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	3.97969e-23
LS483305.1\|SQE51144.1\|2101163_2102090_-\|oligopeptide-transport-system-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.6698e-111
LS483305.1\|SQE51149.1\|2106280_2108878_-\|clpB-protein	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
LS483305.1\|SQE51158.1\|2116207_2117113_-\|fumarylacetoacetate-(FAA)-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	6.68815e-85
LS483305.1\|SQE51157.1\|2115656_2116001_-\|Protein-of-uncharacterised-function-(DUF1516)	gnl\|CDD\|237465	PRK13673, PRK13673, hypothetical protein; Provisional.	3.93775e-24
LS483305.1\|SQE51150.1\|2109048_2109741_+\|carD-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	6.69985e-38
LS483305.1\|SQE51153.1\|2110485_2111298_+\|hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.1212e-83
LS483305.1\|SQE51146.1\|2102906_2104151_-\|3-oxoacyl-ACP-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
LS483305.1\|SQE51142.1\|2099005_2100079_-\|oligopeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
LS483305.1\|SQE51143.1\|2100093_2101164_-\|Oligopeptide-transport-system-permease-protein-oppC	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.85357e-100
LS483305.1\|SQE51152.1\|2110056_2110365_-\|PaaD-like-protein	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	1.07141e-41
LS483305.1\|SQE51147.1\|2104165_2105107_-\|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASIII	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.31343e-176
LS483305.1\|SQE51148.1\|2105293_2105497_+\|Protein-of-uncharacterised-function-(DUF2929)	gnl\|CDD\|371396	pfam11151, DUF2929, Protein of unknown function (DUF2929). This family of proteins with unknown function appears to be restricted to Firmicutes.	8.29487e-10

>LS483305.1|SQE51148.1|2105293_2105497_+|Protein-of-uncharacterised-function-(DUF2929)
MQYILTFIWAFLLSQMINFVLHSLGGSDEALNFVSPTIYAIIFTVVIILLDALVGKSTSDKQSTQHS
>LS483305.1|SQE51147.1|2104165_2105107_-|3-oxoacyl-[acyl-carrier-protein]-synthase,-KASIII
MDIGIKGFGAYAPKQVVKNGYFESYLDTSDEWITKMTGIKERRFADDTEDTSDLAYEAAVRAIEDSGIDKEEIEMIIVATSTGDKPFPTVATTLQKRLGLNKVPSMDQLAACTGFIYGIVTAQQFVQSGLYKNVLVVGADKLTKITDMNDRSTAILFGDGAGAAIIGEVSEGKGILSVELGSDGNGGPYLYQDMDANTIQMNGREVFKFAVRIMGEASTKAVEKAGLQSDDIDMFVPHQANIRIMESARERLGIAKEKMSVTVDRYGNTSAASIPLSIAYELEQGKIKDNDTIVLVGFGGGLTWGAITLRWGK
>LS483305.1|SQE51146.1|2102906_2104151_-|3-oxoacyl-ACP-synthase-II
MTEKKRVVMTGLGTLNPLGNDVPTTWENAINGKNGIDEVTRIDVSEFPAKLAGELKDFNIDDHIPKKDARKMDRFTQYAIVAAREALKDSKYEITVENSHRVGVWIGSGIGGMETFEYSHNMLLKRGPKRVSPFFVPMMIPDMATGQVSIDLGAKGPNGCTVTACATGTNSIGDAFKIIQRGDADVMLAGGTEAPITEMAMAGFSANKALSTNPDKNTACRPFQEGRDGFIMGEGAGVVVLESLESAEARGAHIYAEVVGYGSTGDAFHITAPSPNGEGGARAMQEAIKDAGIKPEDIQYLNAHGTSTPIGDLYEVLAIKSTFGDAAKNLKVSSTKSMMGHLLGATGAVESILTALSIENSIVAPTINANTPDPEIDLDYTPNEAAKLDIEYAMSNSLGFGGHNAVLVFKKYQK
>LS483305.1|SQE51145.1|2102471_2102843_+|Uncharacterised-protein
MKFWGIFTIGYIGLFAVLCLIFLKDLDQAANIYFYIMTIAFAASWIVAMKQDGVGEVSRQAVRKFNFHMKSKASQDYLKDDEIMNPNMKELHLKERTIHNWVLPFVVLSTLFFIISIFLGFIV
>LS483305.1|SQE51144.1|2101163_2102090_-|oligopeptide-transport-system-permease
MVRYTLKRIIYMFISLFLIMTITFFLMKLLPGSPYNDEKLSEEQKVIINEKYGLNDPVPVQYANYLKNVAKGDFGISFQYDNREVWSLIKPRLGPSVEMGTYAMILGTITGLLLGIVAAIRQNTIVDYGATFLSVIFISVPSFVLAVLLQYVFAVEWQIFPVAGWSGFMTAVLPSIALAAGVTATIARYIRSEMIEVLSSDYIELARAKGMSSARVIFGHAVRNGLIPIITIIVPMLAGILTGTLTIENIFGVPGLGDQFVRSIQTNDYPVIMALTLLFSFLFIISIFLVDVLYGLVDPRIRVEGGKK
>LS483305.1|SQE51143.1|2100093_2101164_-|Oligopeptide-transport-system-permease-protein-oppC
MANNDDNKLNNSGYDNASVTHSTQGMPAESFVLHGRDKVVEEKFERKSRTFWQDAWKQLVGNRLAIIGLIFLILLTVISLVGPLMNDHKFSDQNVSHANLPPKIPVLDKVPFLPFDGTDRDGFDLYESQNVQENYWFGTDELGRDLWTRTWRGTQVSLFIGVVAAALDIFIGVIYGAVSGYFGGRIDDILQRIVEILSSIPNLIVVILFVLLFDPSIWTIILAMSVTGWLGMSRIVRGQFLKIKEQEFVMASRTLGVSNFKLIFKHILPNTLGPIIVTSMFTVPSAIFFEAFLSFIGLGIPAPQASLGSLVDTGRKMLLIYPHELFVPATVLSLLILFFYLFSDGLRDAFDPKMRK
>LS483305.1|SQE51142.1|2099005_2100079_-|oligopeptide-ABC-transporter-ATP-binding-protein
MAKRILEVNNLHVSFDIDAGEVQAVRGVDFYLDKGETLAIVGESGSGKSVTTKALTRLLPKKVGRIKDGSILFDGKDIAKLSEKEMQKIRGKEIGMIFQDPMTSLNPTMKIGKQVMEPLIKHQKLSKQDAKKRALDILNLVGLPKAKERFNNYPHQFSGGQRQRIVIATALACDPKILIADEPTTALDVTIQAQILELMKELQHKIDTSIIFITHDLGVVANVADRVAVMYGGQIVETGSVDEIFYNPKHPYTWGLLSSMPSLETSHDTELLAIPGTPPDLIKPPVGDAFARRSEYALDIDFKEEPPWFQISPTHFVKSWLLDERAPEVELPEAVKLKQKATPDQFDKPKRVERVTF
>LS483305.1|SQE51141.1|2098040_2099006_-|oligopeptide-transport-system-ATP-binding-protein-OppF
MADKKEVLIDVQNLKQYFNVGKKNEVKAVDDISFQIFKGETLGLVGESGCGKSTTGRTLIKLYDATDGKVIFDNVDIQNIKKRKDLLRFNRRMQMIFQDPYASLNPRLKVMDIIAEGLDVHKLVSSKEERKKRVYELLETVGLNKEHANRYPHEFSGGQRQRLGIARALAVEPEFIIADEPISALDVSIQAQVVNLMQKLQDEKGITFLFIAHDLSMVKYISDRIGVMYFGKLVELGPSDQIYKHPQHEYTKSLLSAIPLPDPDSERTRTRSSYNPDIHKYEDDDKLELREVGPDHFVYCSEKEFAEKKANYNKDFDLTEA
>LS483305.1|SQE51140.1|2096182_2097853_-|oligopeptide-ABC-transporter-periplasmic-oligopeptide-binding-protein
MRKKISVLLSILVAAVLTLAACSGGGSKSDEGGKGGVKSEKSENVLNLASTSDIPTMDSSLATDQVSFFTFNQTLEGLYVLDKDDNPAPGVAEADPEKSADGKTWTIKLRDNAKWSNGDPVTAHDFVYAWQRTVNPDTAAEYAYMFENIENAKDITAGKKKPEELGVKAIDDQTLEIKLIKDVPWMQSLFAFGSFMPQNEKFVEKQGKKFGTTADATLSNGPFIMKEWKTEDNWKLVPNKEYWDKDKVKLKEVNYKVVKEVQTAVNMYQTGKLDTVSLDSSNVNKYKDREDFSTQLNSSNFFFRINKTKNKDLENQDLRKAFAKSIDKEQYVKSLLNNGSVPSDKLMVKDFVKDEDGKDYIDGVKSPLGYDKEEAKKLLEKAKKATGKDKFNIELLTYDADESKKAAEFVKEQVEKNLPGVTLKIKQQPFKQKLALESKGDYDISFAGWGPDYPDSTTFLDLFKKNSPHNQTGYANAEYDKALEEANSDEMLKDENSEKRTKLLQDAETKFLDSASIGPLYQQGVARLRQPYVKNWQPHKFGGDYSLKEVEIAGAK
>LS483305.1|SQE51139.1|2094437_2096093_-|peptide-ABC-transporter-substrate-binding-protein
MKKYKVIFMIVVSLMLILSACSNDKDEKGSNIKQSKSKNELNLSSGDDIPTMDPSLAADQVSFTTFAQTLEGLYVLDKNDKPIPGVAKDKPKKSSDGKTWTIQLRDNAKWSNGDPVTAHDFVYAWQRSVDPDTAAEFAYMFENIENAKEITQGDKKPEELGVKAIDDHTLQIKLIKDVPWMESLLAFGSYMPQNEKFVEKQGDKFGTTAKTTLSNGPYKLTEWKPEDKWKLEKNDEYWDKDKVKVKDVNVKVVKNTQTAINMYQTGKLDMVGLDAQNIKKYKDREDFSTEATSGSYFFRINKEKNENLKNEDLRKAIAKSIDKKSYVNSLLNNGSKPLDTLMIKDFVKDSDDKDYTEGVKSSLSYNKKDAKDHLEKAKKDLGKDKFTIELLTYDEDESKKAGEFVKEQVEKNLPGVTLKIKQQPFKQKLALESKKDFDISFAGWFPDYPDPTTFLDLFTSDSPHNQTGYANKAYDKALEEANSDEMLKPENSDKRIKALQDAESEFLDSASISPLFQTGSARLRQPYIKNWQNHKYGGDYTLKGVEIEGAK
>LS483305.1|SQE51149.1|2106280_2108878_-|clpB-protein
MDINQMTYSVQSAIEQAQQLSQSYQLQNIEIEAVLLAALNEDESIYKRTLERANIDTEILKDKYEQKLKQYSVVKGDNVQYGQYISPKLNELFNKADKIKEEMQDDYMSMEHILKAAIEVDQTTIDMVGNKKEVVNEIINKIRGGNRVTSQNPEVQYEALSKYGRDLVEEVRKGKMDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKRDVPESLLDKTIFELDLSALVAGAKFRGEFEERLKAVLKEVKESEGRILLFIDEIHMLVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLNEYRQYIEKDSALERRFQKVSVKEPDLEDTISILRGLKERYEVHHGVRIQDRALVAATELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDAVNRRVMQLEIEENALKSESDQSSQIRLEELQKELADEKEKQQQLQSKVEQEKEQIKSLQDKRAELDESKQALENAENQYDLAKAAELKHGKIPQIEAELKELEEAFAEETGSDHDRLIREVVTDEEIGYIVSQWTGIPVSRLVETEREKLLKLSDILHERVVGQDEAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDSEKHMIRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRQPYSVILLDEIEKAHNDVFNVLLQLLDEGRLTDAKGRSVDFKNTIIIMTSNIGSQYLLDGVTENGEIEESAKKQVNDSLHAYFKPEILNRMDDIVLFKPLSIKDMSHIVDHIITNLNIRLVDQHIKVSVDQDVKEWIAEEAYEPQFGARPLKRFVQRQIETPLARLMIGQELKEGTIVNVHLVDGEVKFEVNA
>LS483305.1|SQE51150.1|2109048_2109741_+|carD-family-transcriptional-regulator
MQTTYTEATSIIEYIIQHGQRHHFDAHHYIYHTGDLCNHIYVIVEGKVITHRVMEDGKEFNTKLLGRHSIFGSTTLFCGRKTHSLSARVKEAAVVFSIPKVQFEEAILNDEVLKYEWLLWVQNENEKNEYQIRDVYTLGKTGAFYSILIKLANTYGIQGGNSILINVDLTNHELANFCNVTRESVNRMLSNLKKEKIVSINHKKITIHDLDYLKRAINCENCPLSICRIE
>LS483305.1|SQE51151.1|2109783_2109975_+|Uncharacterised-protein
MKNLIWIILGLCCLAYSIDLFYNAIFNNKPLNPVTTIILIFVIFYIIYALISDKYKKTKSTNN
>LS483305.1|SQE51152.1|2110056_2110365_-|PaaD-like-protein
MEEAMKDSIIGALENVIDPELGIDIVNLGLVYNVDLDDEGLCTVEMTLTSMGCPMGPQIIDQVKTALAELPEIKETEVNIVWNPPWGKDKMSRYAKIALGVS
>LS483305.1|SQE51153.1|2110485_2111298_+|hydrolase
MEKHLICLDLDGTLLNDEKRISPFTKRVLQYLKKSGHEIMISTGRPYRASVDYYNAMNMNTPIINFNGAYIHHPTDNRFPTKHEQFDTRIAYKIYKDISQLDIKNIIAEVKDQVYINNYDQSLFEGFSMGNSEIKYGELDQLLPESPTSLLIQAEESEIPRIKRHLNKHYAEFIEHRRWGAPFPVIEIVKKGINKGKAVKYVAEYLDIDFDNIIAFGDEDNDFEMIQFANYGIAMGNAIPELKEIATEVTDTNNNDGIGKYLNKHFDLNM
>LS483305.1|SQE51154.1|2111310_2112156_+|DegV-family-protein
MKMIVDSGSDITLSQIEEKGFYFLPFGIVIDDQNKVDQYEISNEEVLAAIKNNKHPKTNQATMEQMTKVFTEVAEKKEKAIYLAFSSALSGTYQTACLVKEQVKETYPDLDLTIYDTLSASMGCGKLILDVQDKIEQSYTFEELDAYIKERIDKIRHLFTVKDLNYLASGGRLSKGQAFLGNLLNIKPLLHVEEGKLVPIEKYRGSKKLWHAIIDKMQNENSDYSDDIIYMTHADDIEEAEKIKALIQSSLSPQDVVISNIGPVICSHTGSGTVAIFYYKE
>LS483305.1|SQE51155.1|2112162_2113494_+|coenzyme-A-disulfide-reductase
MAKIIVIGAVAGGATVASQIRRLDPDSDITVYEKDRDMSFANCGLPYYLGEVVEDRNMMLSATPEQFKDKKHITVKTYHEAIELNDTKKTIAIKNHETGEIFEDAYDKLILSPGCRARHLGFQSDRVFTLRNLVDTDKIEDFIQKENVQSALIVGAGYVSLEILENLYNRNIQTTLIHRSDHINKSMDKDLNKVIFDELEKRHIPYRLNEEIADISGREVTFKSGKTESYDLVITGVGIEPNSDWLKSSSLKLNEKGYISVNEYFETNLEDVYALGDVIETFYRHTKKPTSVTLAWGAHRAAALIAENITSKSSSSKATFKGLLGTNIVKMFDYALGSVGVSESELSNYDYEVVEQTQKQHAGYYPSAEPLTLRVYFDKATRKILRACAVGKDGADKRIDIISTAIIGNLTVDELRDIEIAYAPPFSSPKDIVNMIGYKAQSK
>LS483305.1|SQE51156.1|2114081_2115503_-|oligo-1,6-glucosidase
MNKWTKIIISIILIAPLFSSYVFAKEKEYEDVKYPRIYSLVVDRFMNGNNDNNKMIKNNNQSNDLPLGGDFQGIESKLDYIHDMGFNTIHISPVFSHDQKDFLGYKVKNYDDIDKVLGGEKAFKSLVDKVHNKDMKIIVDMPVTYTDEFKQFTDGDLNQIQKSYFKNDQFIDLKNSENQSIYKAKVKNFVDKYHIDGVSMNIVQDGIDAEAFLPEGLDTYGIINKDGINVKNFKHLSTNATRTAIQNAFKTENTEIPTYNQKGEVLIADTWFTERFTKHAADENKFPGTRIKQLMTYMWGYKGPVMMNYGTEIAVNGSKIETINQLQNFRTDKEVIKYLEKIADTFKQYQELYEGKVKVLPHDKGTNLFYYDTNTIDYILNINDSSKSKKVTLDDKLIEKNKMLSGLILGDNIKGKDNRYDLITDREESELYAIINERGLNNSYLVAAVLVILLFGLFIFLVSRRSKRHKNNQ
>LS483305.1|SQE51157.1|2115656_2116001_-|Protein-of-uncharacterised-function-(DUF1516)
MIHFHIFSWLVTIILFFVVYMKVTNKPVHMVLRLFMVFTLISGFVIFMQAMGINGMLYGIKFILGLAVLGLIEVTIAKKKKNKNSQGLFIATIVVMVLTILLGSYLPMGVLHFG
>LS483305.1|SQE51158.1|2116207_2117113_-|fumarylacetoacetate-(FAA)-hydrolase-family-protein
MKFLTFKHKDITSYGVKVKREEAVWDLRKVFADFGEEGFNPKTLLEGLQLNINVDFQEAVRKAVVKVEESAEKDDYKYSFEDIEFLPPVTPTNNVIAFGRNYKKHAEELNNKVNRLYVFTKAASSLTGDNAEIPNHKDVTDKLDYEGELGVVIGKHGEKIPRGLALDYVYGYTIINDITDRNAQKEHDQAFLSKSLTGGCPMGPYIVTKDELPLPEDVNIVTKVNNEIRQDGNTNEMILKIDELIAEISKYVALHPGDIIATGTPAGVGAGMNPPQFLQPGDEIKVTIDGIGTLTTFISEK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483305_3	3.6\|2105895\|18\|LS483305\|CRT	2105895-2105912	18	LS483305.1	1541060-1541077	0	1.0
LS483305_3	3.6\|2105895\|18\|LS483305\|CRT	2105895-2105912	18	LS483305.1	1541140-1541157	0	1.0
LS483305_3	3.6\|2105895\|18\|LS483305\|CRT	2105895-2105912	18	LS483305.1	1541220-1541237	0	1.0
LS483305_3	3.9\|2106015\|18\|LS483305\|CRT	2106015-2106032	18	LS483305.1	1119902-1119919	0	1.0
LS483305_3	3.2\|2105735\|18\|LS483305\|CRT	2105735-2105752	18	LS483305.1	1097402-1097419	1	0.944
LS483305_3	3.6\|2105895\|18\|LS483305\|CRT	2105895-2105912	18	LS483305.1	1119902-1119919	1	0.944
LS483305_3	3.6\|2105895\|18\|LS483305\|CRT	2105895-2105912	18	LS483305.1	2614511-2614528	1	0.944
LS483305_3	3.9\|2106015\|18\|LS483305\|CRT	2106015-2106032	18	LS483305.1	1541060-1541077	1	0.944
LS483305_3	3.9\|2106015\|18\|LS483305\|CRT	2106015-2106032	18	LS483305.1	1541140-1541157	1	0.944
LS483305_3	3.9\|2106015\|18\|LS483305\|CRT	2106015-2106032	18	LS483305.1	1541220-1541237	1	0.944
LS483305_3	3.9\|2106015\|18\|LS483305\|CRT	2106015-2106032	18	LS483305.1	2614511-2614528	1	0.944
LS483305_3	3.2\|2105735\|18\|LS483305\|CRT	2105735-2105752	18	LS483305.1	768037-768054	2	0.889
LS483305_3	3.2\|2105735\|18\|LS483305\|CRT	2105735-2105752	18	LS483305.1	768157-768174	2	0.889
LS483305_3	3.2\|2105735\|18\|LS483305\|CRT	2105735-2105752	18	LS483305.1	1048813-1048830	2	0.889
LS483305_3	3.2\|2105735\|18\|LS483305\|CRT	2105735-2105752	18	LS483305.1	1048853-1048870	2	0.889
LS483305_3	3.2\|2105735\|18\|LS483305\|CRT	2105735-2105752	18	LS483305.1	1048893-1048910	2	0.889
LS483305_3	3.2\|2105735\|18\|LS483305\|CRT	2105735-2105752	18	LS483305.1	1113146-1113163	2	0.889
LS483305_3	3.3\|2105775\|18\|LS483305\|CRT	2105775-2105792	18	LS483305.1	2075128-2075145	2	0.889
LS483305_3	3.5\|2105855\|18\|LS483305\|CRT	2105855-2105872	18	LS483305.1	2075128-2075145	2	0.889
LS483305_3	3.6\|2105895\|18\|LS483305\|CRT	2105895-2105912	18	LS483305.1	1332217-1332234	2	0.889
LS483305_3	3.8\|2105975\|18\|LS483305\|CRT	2105975-2105992	18	LS483305.1	2075128-2075145	2	0.889

1. spacer 3.6|2105895|18|LS483305|CRT matches to position: 1541060-1541077, mismatch: 0, identity: 1.0

taaggatacccatagtta	CRISPR spacer
taaggatacccatagtta	Protospacer
******************

2. spacer 3.6|2105895|18|LS483305|CRT matches to position: 1541140-1541157, mismatch: 0, identity: 1.0

taaggatacccatagtta	CRISPR spacer
taaggatacccatagtta	Protospacer
******************

3. spacer 3.6|2105895|18|LS483305|CRT matches to position: 1541220-1541237, mismatch: 0, identity: 1.0

taaggatacccatagtta	CRISPR spacer
taaggatacccatagtta	Protospacer
******************

4. spacer 3.9|2106015|18|LS483305|CRT matches to position: 1119902-1119919, mismatch: 0, identity: 1.0

taaggatatccatagtta	CRISPR spacer
taaggatatccatagtta	Protospacer
******************

5. spacer 3.2|2105735|18|LS483305|CRT matches to position: 1097402-1097419, mismatch: 1, identity: 0.944

tatgggcggctataatta	CRISPR spacer
tatgggcgtctataatta	Protospacer
******** *********

6. spacer 3.6|2105895|18|LS483305|CRT matches to position: 1119902-1119919, mismatch: 1, identity: 0.944

taaggatacccatagtta	CRISPR spacer
taaggatatccatagtta	Protospacer
********.*********

7. spacer 3.6|2105895|18|LS483305|CRT matches to position: 2614511-2614528, mismatch: 1, identity: 0.944

taaggatacccatagtta	CRISPR spacer
taaggatagccatagtta	Protospacer
******** *********

8. spacer 3.9|2106015|18|LS483305|CRT matches to position: 1541060-1541077, mismatch: 1, identity: 0.944

taaggatatccatagtta	CRISPR spacer
taaggatacccatagtta	Protospacer
********.*********

9. spacer 3.9|2106015|18|LS483305|CRT matches to position: 1541140-1541157, mismatch: 1, identity: 0.944

taaggatatccatagtta	CRISPR spacer
taaggatacccatagtta	Protospacer
********.*********

10. spacer 3.9|2106015|18|LS483305|CRT matches to position: 1541220-1541237, mismatch: 1, identity: 0.944

taaggatatccatagtta	CRISPR spacer
taaggatacccatagtta	Protospacer
********.*********

11. spacer 3.9|2106015|18|LS483305|CRT matches to position: 2614511-2614528, mismatch: 1, identity: 0.944

taaggatatccatagtta	CRISPR spacer
taaggatagccatagtta	Protospacer
******** *********

12. spacer 3.2|2105735|18|LS483305|CRT matches to position: 768037-768054, mismatch: 2, identity: 0.889

tatgggcggctataatta	CRISPR spacer
tatgggggtctataatta	Protospacer
****** * *********

13. spacer 3.2|2105735|18|LS483305|CRT matches to position: 768157-768174, mismatch: 2, identity: 0.889

tatgggcggctataatta	CRISPR spacer
tatgggggtctataatta	Protospacer
****** * *********

14. spacer 3.2|2105735|18|LS483305|CRT matches to position: 1048813-1048830, mismatch: 2, identity: 0.889

tatgggcggctataatta	CRISPR spacer
tatggacggccataatta	Protospacer
*****.****.*******

15. spacer 3.2|2105735|18|LS483305|CRT matches to position: 1048853-1048870, mismatch: 2, identity: 0.889

tatgggcggctataatta	CRISPR spacer
tatgggtcgctataatta	Protospacer
******. **********

16. spacer 3.2|2105735|18|LS483305|CRT matches to position: 1048893-1048910, mismatch: 2, identity: 0.889

tatgggcggctataatta	CRISPR spacer
tatggacggccataatta	Protospacer
*****.****.*******

17. spacer 3.2|2105735|18|LS483305|CRT matches to position: 1113146-1113163, mismatch: 2, identity: 0.889

tatgggcggctataatta	CRISPR spacer
tattgacggctataatta	Protospacer
*** *.************

18. spacer 3.3|2105775|18|LS483305|CRT matches to position: 2075128-2075145, mismatch: 2, identity: 0.889

taagagcggctatattta	CRISPR spacer
taagagcggccataatta	Protospacer
**********.*** ***

19. spacer 3.5|2105855|18|LS483305|CRT matches to position: 2075128-2075145, mismatch: 2, identity: 0.889

taagagcggctatattta	CRISPR spacer
taagagcggccataatta	Protospacer
**********.*** ***

20. spacer 3.6|2105895|18|LS483305|CRT matches to position: 1332217-1332234, mismatch: 2, identity: 0.889

taaggatacccatagtta	CRISPR spacer
taatcatacccatagtta	Protospacer
***  *************

21. spacer 3.8|2105975|18|LS483305|CRT matches to position: 2075128-2075145, mismatch: 2, identity: 0.889

taagagcggctatattta	CRISPR spacer
taagagcggccataatta	Protospacer
**********.*** ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1089175 : 1100926

Staphylococcus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE50160.1\|1089175_1090585_+	O-succinylbenzoic acid-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.6e-133	52.4
SQE50161.1\|1090571_1091570_+	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.1e-63	38.2
SQE50162.1\|1091616_1091841_-	protein YidD	A0A2H4PQM5	Staphylococcus_phage	1.8e-24	67.1
SQE50163.1\|1091851_1092637_-	Uncharacterised protein	NA	NA	NA	NA
SQE50164.1\|1092703_1093168_+	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	8.2e-40	54.5
SQE50165.1\|1093151_1093928_+	peptidase	A0A2H4PQM6	Staphylococcus_phage	1.7e-77	57.1
SQE50166.1\|1093949_1095551_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	1.8e-219	68.8
SQE50167.1\|1095948_1097142_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	5.0e-182	79.6
SQE50168.1\|1097702_1098614_+	Nuclease-related domain	A0A2H4PQQ8	Staphylococcus_phage	3.9e-70	55.0
SQE50169.1\|1098672_1100055_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
SQE50170.1\|1100083_1100926_+	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	2.7e-105	64.0

DBSCAN-SWA_2

1116716 : 1124802

Staphylococcus_phage(85.71%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE50192.1\|1116716_1117871_-\|holin	glycine betaine/carnitine/choline ABC transporter	Q6GZ03	Mycoplasma_phage	2.6e-18	49.5
SQE50193.1\|1118123_1119638_+	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	9.3e-08	42.9
SQE50194.1\|1120398_1121445_+	riboflavin specific deaminase	A0A2H4PQS8	Staphylococcus_phage	6.1e-91	47.7
SQE50195.1\|1121449_1122082_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	2.8e-54	51.4
SQE50196.1\|1122093_1123266_+	3,4-dihydroxy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-139	62.1
SQE50197.1\|1123286_1123757_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-56	81.2
SQE50198.1\|1123797_1124802_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	1.9e-105	57.5

DBSCAN-SWA_3

1128829 : 1136098

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE50204.1\|1128829_1129387_-	rRNA methylase	A0A2H4PQV0	Staphylococcus_phage	3.5e-53	56.8
SQE50205.1\|1129383_1130343_-	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	3.8e-63	80.0
SQE50206.1\|1130462_1131638_+	multidrug resistance transporter protein	A0A2H4PQR6	Staphylococcus_phage	4.2e-125	57.6
SQE50207.1\|1131928_1134313_+\|tRNA	leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	79.3
SQE50208.1\|1134334_1134646_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	2.3e-30	62.1
SQE50209.1\|1134838_1136098_-	flavoprotein	A0A2H4PQX1	Staphylococcus_phage	5.0e-31	62.9

DBSCAN-SWA_4

1265701 : 1274743

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE50328.1\|1265701_1266697_+	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	2.6e-06	29.9
SQE50329.1\|1266713_1267739_+\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQE50330.1\|1267754_1268894_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.1
SQE50331.1\|1268906_1269170_+	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.8e-06	40.9
SQE50332.1\|1269339_1271631_+	preprotein translocase subunit SecD/SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.6e-30	34.0
SQE50333.1\|1271930_1274225_+	putative single-stranded-DNA-specific exonuclease	A7KV88	Bacillus_phage	1.1e-68	30.1
SQE50334.1\|1274224_1274743_+	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.3e-29	47.9

DBSCAN-SWA_5

1804260 : 1877860

Staphylococcus_phage(93.1%)

head,holin,tail,protease,tRNA,capsid,portal,integrase,terminase

attL 1834705:1834747|attR 1876153:1876195

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE50845.1\|1804260_1807011_-\|tRNA	isoleucyl-tRNA synthetase	A0A1V0SJ93	Klosneuvirus	3.0e-89	26.5
SQE50846.1\|1807815_1808589_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
SQE50847.1\|1808660_1808957_-	membrane protein	NA	NA	NA	NA
SQE50848.1\|1808970_1809546_-	cell division-like FtsZ-interacting protein	NA	NA	NA	NA
SQE50849.1\|1809557_1810229_-	alanine racemase	NA	NA	NA	NA
SQE50850.1\|1810237_1811029_-	multi-copper polyphenol oxidoreductase laccase	NA	NA	NA	NA
SQE50851.1\|1811088_1812246_-	cell division protein FtsZ	NA	NA	NA	NA
SQE50852.1\|1812274_1813648_-	Cell division protein FtsA	NA	NA	NA	NA
SQE50853.1\|1813757_1814702_-	putative cell division protein	NA	NA	NA	NA
SQE50854.1\|1814728_1816078_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA
SQE50855.1\|1816079_1817045_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
SQE50856.1\|1817089_1819345_-	penicillin-binding protein 1	NA	NA	NA	NA
SQE50857.1\|1819331_1819712_-	cell division protein, FtsL-like protein	NA	NA	NA	NA
SQE50858.1\|1819731_1820667_-	S-adenosyl-methyltransferase MraW	NA	NA	NA	NA
SQE50859.1\|1820678_1821110_-	cell division protein MraZ	NA	NA	NA	NA
SQE50860.1\|1821255_1822872_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA
SQE50861.1\|1823006_1823453_+	GNAT family acetyltransferase	NA	NA	NA	NA
SQE50862.1\|1823501_1824497_-	membrane protein	NA	NA	NA	NA
SQE50863.1\|1824659_1825718_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
SQE50864.1\|1826053_1829401_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA
SQE50865.1\|1829570_1829807_-	Uncharacterised protein	NA	NA	NA	NA
SQE50866.1\|1829985_1830402_+	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA
SQE50867.1\|1830527_1830863_+	transcriptional regulator	X2CXD8	Lactobacillus_phage	4.3e-06	44.4
SQE50868.1\|1830990_1831161_+	Uncharacterised protein	NA	NA	NA	NA
SQE50869.1\|1831423_1832590_-	putative cell division protein	NA	NA	NA	NA
SQE50870.1\|1833516_1834089_+	dephospho-CoA kinase/protein folding accessory domain-containing protein	NA	NA	NA	NA
SQE50871.1\|1834116_1834554_+	Uncharacterised protein	NA	NA	NA	NA
1834705:1834747	attL	NA	NA	NA	NA
SQE50872.1\|1834892_1835303_+	YolD-like protein	A0A1Q1PW34	Staphylococcus_phage	3.7e-76	100.0
SQE50873.1\|1835313_1835814_+	exported protein	A0A1Q1PW26	Staphylococcus_phage	1.1e-85	100.0
SQE50874.1\|1835968_1836469_+\|tRNA	L-seryl-tRNA(Sec) kinase	A0A1Q1PW45	Staphylococcus_phage	5.0e-91	100.0
SQE50875.1\|1836527_1837085_-	Uncharacterised protein	A0A1Q1PW40	Staphylococcus_phage	2.0e-93	100.0
SQE50876.1\|1837096_1838047_-	Uncharacterised protein	A0A1Q1PW39	Staphylococcus_phage	6.4e-172	100.0
SQE50877.1\|1838737_1838914_-	Uncharacterised protein	A0A1Q1PW37	Staphylococcus_phage	1.1e-24	100.0
SQE50878.1\|1839093_1839963_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A1Q1PW31	Staphylococcus_phage	4.6e-177	100.0
SQE50879.1\|1840038_1840299_-\|holin	phage holin	A0A1Q1PW49	Staphylococcus_phage	1.3e-39	100.0
SQE50880.1\|1840311_1840698_-	Uncharacterised protein	A0A1Q1PW36	Staphylococcus_phage	1.4e-64	100.0
SQE50881.1\|1840697_1841141_-	hypothetical phage membrane protein	A0A1Q1PW24	Staphylococcus_phage	6.6e-71	100.0
SQE50882.1\|1841199_1841487_-	Uncharacterised protein	A0A1Q1PW19	Staphylococcus_phage	3.9e-48	100.0
SQE50883.1\|1841527_1841689_-	phage protein	A0A1Q1PW33	Staphylococcus_phage	1.6e-19	100.0
SQE50884.1\|1841688_1845492_-	phage minor structural protein	A0A1Q1PW30	Staphylococcus_phage	0.0e+00	99.8
SQE50885.1\|1845507_1847028_-\|tail	phage tail family protein	A0A1Q1PW27	Staphylococcus_phage	1.1e-298	100.0
SQE50886.1\|1847042_1852040_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A1Q1PW35	Staphylococcus_phage	0.0e+00	100.0
SQE50887.1\|1852290_1852740_-	Bacteriophage	A0A1Q1PW23	Staphylococcus_phage	9.7e-54	100.0
SQE50888.1\|1852815_1853532_-\|tail	phage major tail, phi13 family protein	A0A1Q1PW21	Staphylococcus_phage	1.2e-130	100.0
SQE50889.1\|1853544_1853925_-	phi PVL orf 12-like protein	A0A1Q1PW41	Staphylococcus_phage	1.1e-66	100.0
SQE50890.1\|1853921_1854299_-	gp10 family phage protein	A0A1Q1PW28	Staphylococcus_phage	4.3e-63	100.0
SQE50891.1\|1854298_1854631_-\|head,tail	phage head-tail adaptor	A0A1Q1PW14	Staphylococcus_phage	4.3e-59	100.0
SQE50892.1\|1854620_1854953_-\|head,tail	phage gp6-like head-tail connector family protein	A0A1Q1PVW9	Staphylococcus_phage	1.9e-59	100.0
SQE50893.1\|1854964_1855159_-	Bacteriophage	A0A1Q1PW25	Staphylococcus_phage	7.4e-27	100.0
SQE50894.1\|1855201_1856428_-\|capsid	phage major capsid protein, HK97 family	A0A1Q1PW20	Staphylococcus_phage	3.0e-198	100.0
SQE50895.1\|1856537_1857146_-\|head,protease	prohead protease	A0A1Q1PVX3	Staphylococcus_phage	1.1e-97	100.0
SQE50896.1\|1857126_1858392_-\|portal	portal protein	A0A1Q1PW22	Staphylococcus_phage	6.0e-242	100.0
SQE50897.1\|1858397_1858598_-	phi PVL orf 3-like protein-related protein	A0A1Q1PW17	Staphylococcus_phage	1.9e-25	100.0
SQE50898.1\|1858609_1860337_-	phage Terminase family protein	A0A1Q1PW18	Staphylococcus_phage	0.0e+00	100.0
SQE50899.1\|1860320_1860803_-\|terminase	phage terminase small subunit	A0A1Q1PVW3	Staphylococcus_phage	7.4e-84	100.0
SQE50900.1\|1860972_1861368_-	phage endonuclease	A0A1Q1PW15	Staphylococcus_phage	8.2e-73	99.2
SQE50901.1\|1861461_1861863_-	RNA polymerase sigma factor, sigma-70 family	A0A1Q1PVV6	Staphylococcus_phage	9.2e-56	100.0
SQE50902.1\|1861896_1862355_-	hypothetical phage-related protein	A0A1Q1PVZ6	Staphylococcus_phage	1.1e-81	100.0
SQE50903.1\|1862341_1862551_-	Uncharacterised protein	A0A1Q1PW12	Staphylococcus_phage	7.0e-31	100.0
SQE50904.1\|1862544_1862760_-	YopX-family protein	A0A1Q1PW05	Staphylococcus_phage	8.7e-37	100.0
SQE50905.1\|1862820_1863219_-	Uncharacterised protein	A0A1Q1PW07	Staphylococcus_phage	1.8e-67	100.0
SQE50906.1\|1863218_1863641_-	phage protein	A0A1Q1PW16	Staphylococcus_phage	1.9e-75	100.0
SQE50907.1\|1863637_1864345_-	Uncharacterised protein	A0A1Q1PW10	Staphylococcus_phage	1.2e-63	100.0
SQE50908.1\|1864328_1865258_-	Phage protein	A0A1Q1PW08	Staphylococcus_phage	1.3e-124	100.0
SQE50909.1\|1865290_1865773_-	single-stranded DNA-binding protein	A0A1Q1PW11	Staphylococcus_phage	1.5e-84	100.0
SQE50910.1\|1865773_1866391_-	Metallo-beta-lactamase superfamily domain-containing protein in prophage	A0A1Q1PW06	Staphylococcus_phage	3.1e-111	99.5
SQE50911.1\|1866471_1867380_-	Recombinational DNA repair protein RecT (prophage associated)	A0A1Q1PVZ0	Staphylococcus_phage	3.2e-157	100.0
SQE50912.1\|1867443_1867914_+	Uncharacterized protein conserved in bacteria	A0A1Q1PVY6	Staphylococcus_phage	7.0e-87	99.4
SQE50913.1\|1867906_1868080_-	Uncharacterised protein	NA	NA	NA	NA
SQE50914.1\|1868076_1868412_-	Uncharacterised protein	A0A1Q1PW02	Staphylococcus_phage	3.1e-57	100.0
SQE50915.1\|1868408_1870361_-	chromosome segregation protein	A0A1Q1PVZ7	Staphylococcus_phage	0.0e+00	100.0
SQE50916.1\|1870448_1870754_-	Uncharacterised protein	A0A1Q1PVZ5	Staphylococcus_phage	6.1e-52	100.0
SQE50917.1\|1870754_1870934_-	Uncharacterised protein	A0A1Q1PW03	Staphylococcus_phage	1.1e-24	100.0
SQE50918.1\|1870930_1871158_-	Uncharacterized protein conserved in bacteria	A0A1Q1PW00	Staphylococcus_phage	4.9e-38	100.0
SQE50919.1\|1871258_1871471_-	prophage, antirepressor, putative	A0A1Q1PVZ9	Staphylococcus_phage	3.7e-32	100.0
SQE50920.1\|1871519_1871729_+	Uncharacterised protein	A0A2H4JAT7	uncultured_Caudovirales_phage	2.2e-16	60.3
SQE50921.1\|1871662_1871827_-	phi PV83 orf 10-like protein	A0A1Q1PW01	Staphylococcus_phage	3.2e-23	100.0
SQE50922.1\|1871840_1872623_-	putative antirepressor, phage associated	A0A1Q1PVZ8	Staphylococcus_phage	2.6e-147	100.0
SQE50923.1\|1872656_1872896_-	phage protein	A0A1Q1PVY0	Staphylococcus_phage	4.8e-36	100.0
SQE50924.1\|1873040_1873661_+	Phage repressor	A0A1Q1PVX8	Staphylococcus_phage	7.0e-111	100.0
SQE50925.1\|1873719_1874691_+	Uncharacterised protein	A0A1Q1PVZ4	Staphylococcus_phage	1.2e-178	100.0
SQE50926.1\|1874664_1874853_-	Uncharacterised protein	A0A1Q1PVY5	Staphylococcus_phage	2.7e-26	100.0
SQE50927.1\|1875024_1876053_+\|integrase	integrase	A0A1Q1PVY8	Staphylococcus_phage	3.8e-194	99.7
SQE50928.1\|1876374_1876590_-	Uncharacterised protein	NA	NA	NA	NA
1876153:1876195	attR	NA	NA	NA	NA
SQE50929.1\|1876772_1877279_-	phosphoesterase	NA	NA	NA	NA
SQE50930.1\|1877275_1877860_-	nucleoside-triphosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	8.0e-16	33.7

DBSCAN-SWA_6

1957791 : 1966262

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE51014.1\|1957791_1958358_-	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-28	39.6
SQE51015.1\|1958354_1959389_-	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	1.9e-68	44.3
SQE51016.1\|1959372_1960869_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.0e-43	31.5
SQE51017.1\|1960847_1963037_-	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.5e-141	40.0
SQE51018.1\|1963029_1963701_-	phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit	NA	NA	NA	NA
SQE51019.1\|1963700_1963961_-	phosphoribosylformylglycinamidine synthase PurS component	NA	NA	NA	NA
SQE51020.1\|1963962_1964664_-	phosphoribosylaminoimidazole succinocarboxamide synthase	G8EYA2	Synechococcus_phage	7.8e-42	39.1
SQE51021.1\|1964665_1965793_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
SQE51022.1\|1965779_1966262_-	phosphoribosylaminoimidazole carboxylase PurE	A0A2P0VNU7	Tetraselmis_virus	8.9e-21	42.0

DBSCAN-SWA_7

2043220 : 2050407

Staphylococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE51089.1\|2043220_2043631_+	YolD-like protein	A0A1Q1PW34	Staphylococcus_phage	3.2e-72	94.9
SQE51090.1\|2043720_2044506_+	Uncharacterised protein	NA	NA	NA	NA
SQE51091.1\|2044643_2045375_-	nuclease NucT	NA	NA	NA	NA
SQE51092.1\|2045364_2045562_-	Uncharacterised protein	M9NSU5	Staphylococcus_phage	1.1e-09	63.0
SQE51093.1\|2046137_2046584_-	Acetyltransferase, GNAT family protein	NA	NA	NA	NA
SQE51094.1\|2046595_2047015_-	fosfomycin resistance protein FosB	Q2LI91	Bacillus_phage	2.7e-34	57.6
SQE51095.1\|2047354_2048209_-	N-acetylmuramoyl-L-alanine amidase	A0A1Q1PW31	Staphylococcus_phage	1.4e-133	78.5
SQE51096.1\|2048266_2048542_-	Small integral membrane protein	A0A0B5A2E7	Streptococcus_phage	3.7e-16	45.7
SQE51097.1\|2048560_2048704_-	bifunctional autolysin Atl/N-acetylmuramoyl-L-alanine amidase/endo-beta-N-acetylglucosaminidase	A0A1W6JQU5	Staphylococcus_phage	2.4e-14	74.5
SQE51098.1\|2048700_2050407_-	bifunctional autolysin Atl/N-acetylmuramoyl-L-alanine amidase/endo-beta-N-acetylglucosaminidase	Q4ZE13	Staphylococcus_virus	2.0e-168	52.9

DBSCAN-SWA_8

2166263 : 2173597

Staphylococcus_phage(50.0%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE51208.1\|2166263_2166896_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-23	37.3
SQE51209.1\|2166892_2167255_-	putative DUF1093-containing protein	NA	NA	NA	NA
SQE51210.1\|2167254_2169258_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
SQE51211.1\|2169283_2169577_-\|bacteriocin	lactococcin-like bacteriocin, putative	NA	NA	NA	NA
SQE51212.1\|2169831_2171085_-	amidase	A0A1X9I9G7	Staphylococcus_phage	1.6e-74	74.1
SQE51213.1\|2171105_2171426_-	Uncharacterised protein	Q4ZD59	Staphylococcus_phage	1.9e-27	67.5
SQE51214.1\|2171568_2171898_+	putative repressor, phage associated	H9A0K4	Staphylococcus_phage	4.1e-09	38.6
SQE51215.1\|2171929_2172394_+	phage protein	A1BTY5	Staphylococcus_virus	1.8e-39	52.3
SQE51216.1\|2172448_2173597_-	gluconate dehydratase	Q6A202	Oenococcus_phage	2.6e-63	36.8

DBSCAN-SWA_9

2232816 : 2239981

Staphylococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE51291.1\|2232816_2232969_-	Uncharacterised protein	A0A1Q1PVW7	Staphylococcus_phage	1.1e-12	78.0
SQE51292.1\|2233781_2234123_+	YolD-like protein	A0A1Q1PW34	Staphylococcus_phage	2.2e-34	78.9
SQE51293.1\|2234123_2234264_-	Uncharacterised protein	NA	NA	NA	NA
SQE51294.1\|2234485_2234662_-	Uncharacterised protein	A0A1Q1PW37	Staphylococcus_phage	6.5e-22	89.7
SQE51295.1\|2234794_2235019_-	Uncharacterised protein	NA	NA	NA	NA
SQE51296.1\|2235336_2236227_-	CHAP domain-containing protein	A0A1W6JQB6	Staphylococcus_phage	2.7e-63	33.2
SQE51297.1\|2237154_2237616_-	tmRNA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.3e-57	77.2
SQE51298.1\|2237632_2239981_-	exoribonuclease	Q0GXV6	Lactococcus_phage	1.0e-90	38.1

DBSCAN-SWA_10

2289714 : 2302455

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE51350.1\|2289714_2290686_-	cobalamin Fe3+-siderophores ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.8e-114	66.6
SQE51351.1\|2290812_2291229_-	Uncharacterised protein	NA	NA	NA	NA
SQE51352.1\|2291378_2292350_-	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	2.6e-160	85.4
SQE51353.1\|2292378_2294484_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	84.0
SQE51354.1\|2294446_2294845_-	ribonucleotide reduction protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	3.0e-38	58.3
SQE51355.1\|2295220_2296105_+	putative permease	NA	NA	NA	NA
SQE51356.1\|2296104_2296605_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	1.0e-48	67.9
SQE51357.1\|2296899_2298414_+	di-tripeptide ABC transporter	A0A0P0IY73	Acinetobacter_phage	1.2e-66	34.9
SQE51358.1\|2299199_2300702_+	di-tripeptide ABC transporter	A0A0P0IY73	Acinetobacter_phage	4.8e-65	35.6
SQE51359.1\|2300741_2301323_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
SQE51360.1\|2301387_2302455_-	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	1.8e-13	22.8

Anti-CRISPR protein detection

Acr_ID: LS483305.1|SQE50197.1|1123286_1123757_+|6,7-dimethyl-8-ribityllumazine-synthase

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483305.1|SQE50197.1|1123286_1123757_+|6,7-dimethyl-8-ribityllumazine-synthase

1123286_1123757_+

156 aa aa

1116716-1124802

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483305_3	Orphan	3.6\|2105895\|18\|LS483305\|CRT	2105895-2105912	18	1119919-1119902	1
LS483305_3	Orphan	3.9\|2106015\|18\|LS483305\|CRT	2106015-2106032	18	1119919-1119902	0

1. spacer 3.6|2105895|18|LS483305|CRT matches to LS483305 position: 1119919-1119902, mismatch: 1

taaggatacccatagtta	CRISPR spacer
taaggatatccatagtta	Protospacer
********.*********

2. spacer 3.9|2106015|18|LS483305|CRT matches to LS483305 position: 1119919-1119902, mismatch: 0

taaggatatccatagtta	CRISPR spacer
taaggatatccatagtta	Protospacer
******************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483305

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information