CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483314	Staphylococcus aureus strain NCTC3761 genome assembly, chromosome: 1	8 crisprs	cas3,DEDDh,DinG,csa3,WYL	5	1	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483314_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_1

142190-142271

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_1

>merge|LS483314|1|142190-142271|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>LS483314|1|1|142190-142271|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE75504.1\|147849_148875_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
LS483314.1\|SQE75506.1\|150957_158133_+\|thioester-reductase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
LS483314.1\|SQE75492.1\|136594_137740_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	unknown	unknown	gnl\|CDD\|223458
LS483314.1\|SQE75499.1\|143570_144311_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
LS483314.1\|SQE75496.1\|141081_142041_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	unknown	unknown	gnl\|CDD\|224151
LS483314.1\|SQE75489.1\|133757_134315_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	unknown	unknown	gnl\|CDD\|225059
LS483314.1\|SQE75488.1\|132541_133747_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	unknown	unknown	gnl\|CDD\|340825
LS483314.1\|SQE75500.1\|144324_145299_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	unknown	unknown	gnl\|CDD\|270271
LS483314.1\|SQE75493.1\|137804_138131_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
LS483314.1\|SQE75501.1\|145295_146057_+\|ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|223673
LS483314.1\|SQE75495.1\|138947_140435_+\|Aldehyde-dehydrogenase-B	unknown	unknown	gnl\|CDD\|143435
LS483314.1\|SQE75503.1\|147317_147677_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|227896
LS483314.1\|SQE75491.1\|135255_136518_+\|capsular-polysaccharide-synthesis-enzyme	unknown	unknown	gnl\|CDD\|223749
LS483314.1\|SQE75502.1\|146066_147101_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
LS483314.1\|SQE75487.1\|131335_132541_+\|capsular-polysaccharide-synthesis-protein-Cap5K	unknown	unknown	unknown
LS483314.1\|SQE75498.1\|142716_143229_+\|alpha-helical-coiled-coil-protein	unknown	unknown	gnl\|CDD\|379428
LS483314.1\|SQE75494.1\|138137_138521_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|377291
LS483314.1\|SQE75505.1\|149260_150511_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|340887
LS483314.1\|SQE75490.1\|134314_135202_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	unknown	unknown	gnl\|CDD\|187543
LS483314.1\|SQE75497.1\|142334_142538_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE75506.1\|150957_158133_+\|thioester-reductase-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
LS483314.1\|SQE75492.1\|136594_137740_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
LS483314.1\|SQE75493.1\|137804_138131_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
LS483314.1\|SQE75500.1\|144324_145299_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.03649e-50
LS483314.1\|SQE75489.1\|133757_134315_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
LS483314.1\|SQE75488.1\|132541_133747_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.1999e-72
LS483314.1\|SQE75499.1\|143570_144311_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.48266e-112
LS483314.1\|SQE75501.1\|145295_146057_+\|ABC-transporter-permease-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
LS483314.1\|SQE75495.1\|138947_140435_+\|Aldehyde-dehydrogenase-B	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
LS483314.1\|SQE75503.1\|147317_147677_+\|Putative-cytosolic-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
LS483314.1\|SQE75491.1\|135255_136518_+\|capsular-polysaccharide-synthesis-enzyme	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
LS483314.1\|SQE75502.1\|146066_147101_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.63983e-20
LS483314.1\|SQE75490.1\|134314_135202_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.07051e-118
LS483314.1\|SQE75498.1\|142716_143229_+\|alpha-helical-coiled-coil-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
LS483314.1\|SQE75496.1\|141081_142041_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
LS483314.1\|SQE75505.1\|149260_150511_+\|integral-membrane-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
LS483314.1\|SQE75494.1\|138137_138521_-\|membrane-spanning-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	7.54946e-41
LS483314.1\|SQE75504.1\|147849_148875_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0

>LS483314.1|SQE75496.1|141081_142041_+|putative-cation-efflux-system-membrane-protein-similar-to-CzcD
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>LS483314.1|SQE75495.1|138947_140435_+|Aldehyde-dehydrogenase-B
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDKEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>LS483314.1|SQE75494.1|138137_138521_-|membrane-spanning-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIAFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>LS483314.1|SQE75493.1|137804_138131_-|Heme-degrading-cytoplasmic-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>LS483314.1|SQE75492.1|136594_137740_+|Capsular-polysaccharide-synthesis-enzyme-Cap8P
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERILITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK
>LS483314.1|SQE75491.1|135255_136518_+|capsular-polysaccharide-synthesis-enzyme
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEIYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>LS483314.1|SQE75490.1|134314_135202_+|Capsular-polysaccharide-synthesis-enzyme-Cap8N
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQLHRKTVLINMPSMLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>LS483314.1|SQE75489.1|133757_134315_+|Capsular-polysaccharide-synthesis-enzyme-Cap5M
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>LS483314.1|SQE75488.1|132541_133747_+|Capsular-polysaccharide-synthesis-enzyme-Cap5L
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>LS483314.1|SQE75487.1|131335_132541_+|capsular-polysaccharide-synthesis-protein-Cap5K
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLTQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITIIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>LS483314.1|SQE75497.1|142334_142538_-|Uncharacterised-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>LS483314.1|SQE75498.1|142716_143229_+|alpha-helical-coiled-coil-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>LS483314.1|SQE75499.1|143570_144311_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSLKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>LS483314.1|SQE75500.1|144324_145299_+|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA
MKRLSIIVIIGIFIIIGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>LS483314.1|SQE75501.1|145295_146057_+|ABC-transporter-permease-protein
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>LS483314.1|SQE75502.1|146066_147101_+|acyl-CoA-dehydrogenase
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>LS483314.1|SQE75503.1|147317_147677_+|Putative-cytosolic-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>LS483314.1|SQE75504.1|147849_148875_+|NAD-dependent-formate-dehydrogenase
MKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>LS483314.1|SQE75505.1|149260_150511_+|integral-membrane-protein
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>LS483314.1|SQE75506.1|150957_158133_+|thioester-reductase-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELSTYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDVTPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPETIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQRLIARHEILRTQYIVVDDEVRQRIVADVAVDFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYIINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEAVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPKKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPAQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQMEQDLKQYLNDHLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMHQNQQSLVALPDNLSELQKIVMSRYNLGVLEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: LS483314_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_2

265439-265579

Orphan

Consensus_repeat	Method
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_2

>merge|LS483314|2|265439-265579|CRISPRCasFinder
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG

>LS483314|2|2|265439-265579|CRISPRCasFinder
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	CGGAAAGTCAGCATACAATAATGTGCAAGTTGGCG
GGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE75599.1\|268202_269084_-\|sugar-transport-protein	unknown	unknown	gnl\|CDD\|284268
LS483314.1\|SQE75603.1\|273725_274676_+\|peptidoglycan-hydrolase	unknown	unknown	gnl\|CDD\|366703
LS483314.1\|SQE75592.1\|261456_262158_+\|LrgA-associated-membrane-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
LS483314.1\|SQE75594.1\|263118_263910_+\|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component	unknown	unknown	gnl\|CDD\|225101
LS483314.1\|SQE75587.1\|255626_257348_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|376098
LS483314.1\|SQE75595.1\|263925_265362_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
LS483314.1\|SQE75589.1\|258410_260165_+\|Autolysis-histidine-kinase-LytS	unknown	unknown	gnl\|CDD\|225814
LS483314.1\|SQE75601.1\|270797_272174_-\|multidrug-resistance-protein-B	unknown	unknown	gnl\|CDD\|129794
LS483314.1\|SQE75602.1\|272407_273400_+\|choloylglycine-hydrolase	unknown	unknown	gnl\|CDD\|225591
LS483314.1\|SQE75586.1\|253905_255594_+\|Putative-polyribitolphosphotransferase	unknown	unknown	gnl\|CDD\|367953
LS483314.1\|SQE75596.1\|265829_266591_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
LS483314.1\|SQE75590.1\|260167_260908_+\|Autolysis-response-regulater-LytR	unknown	unknown	gnl\|CDD\|184495
LS483314.1\|SQE75593.1\|262265_262970_-\|Transcriptional-regulator,-GntR-family	unknown	unknown	gnl\|CDD\|225099
LS483314.1\|SQE75588.1\|257491_258166_+\|DnrN	unknown	unknown	gnl\|CDD\|183940
LS483314.1\|SQE75604.1\|274727_275387_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LS483314.1\|SQE75605.1\|275400_276321_-\|ABC-2-family-transporter-protein	unknown	unknown	gnl\|CDD\|378925
LS483314.1\|SQE75600.1\|269315_270314_-\|ribose-operon-repressor,-putative	unknown	unknown	gnl\|CDD\|224525
LS483314.1\|SQE75597.1\|266841_267756_-\|Ribokinase	unknown	unknown	gnl\|CDD\|274000
LS483314.1\|SQE75591.1\|261026_261464_+\|holin-like-protein	unknown	unknown	gnl\|CDD\|235222
LS483314.1\|SQE75598.1\|267783_268188_-\|Ribose-ABC-transport-system,-high-affinity-permease-RbsD	unknown	unknown	gnl\|CDD\|183318

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE75599.1\|268202_269084_-\|sugar-transport-protein	gnl\|CDD\|284268	pfam06800, Sugar_transport, Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes. These members are transmembrane proteins which are usually 5+5 duplications. This model recognizes a set of five TMs,.	4.46997e-117
LS483314.1\|SQE75603.1\|273725_274676_+\|peptidoglycan-hydrolase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	6.32575e-32
LS483314.1\|SQE75592.1\|261456_262158_+\|LrgA-associated-membrane-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
LS483314.1\|SQE75594.1\|263118_263910_+\|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component	gnl\|CDD\|225101	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism].	1.8481e-54
LS483314.1\|SQE75587.1\|255626_257348_+\|glycosyl-transferase	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	4.75037e-35
LS483314.1\|SQE75595.1\|263925_265362_+\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
LS483314.1\|SQE75589.1\|258410_260165_+\|Autolysis-histidine-kinase-LytS	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
LS483314.1\|SQE75601.1\|270797_272174_-\|multidrug-resistance-protein-B	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.20037e-31
LS483314.1\|SQE75602.1\|272407_273400_+\|choloylglycine-hydrolase	gnl\|CDD\|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	1.22357e-151
LS483314.1\|SQE75586.1\|253905_255594_+\|Putative-polyribitolphosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.42901e-119
LS483314.1\|SQE75596.1\|265829_266591_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.03413e-27
LS483314.1\|SQE75590.1\|260167_260908_+\|Autolysis-response-regulater-LytR	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	9.61135e-152
LS483314.1\|SQE75593.1\|262265_262970_-\|Transcriptional-regulator,-GntR-family	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.3822e-62
LS483314.1\|SQE75588.1\|257491_258166_+\|DnrN	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	7.18502e-154
LS483314.1\|SQE75604.1\|274727_275387_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.07951e-65
LS483314.1\|SQE75605.1\|275400_276321_-\|ABC-2-family-transporter-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.83819e-07
LS483314.1\|SQE75600.1\|269315_270314_-\|ribose-operon-repressor,-putative	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.35556e-100
LS483314.1\|SQE75597.1\|266841_267756_-\|Ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	6.00205e-143
LS483314.1\|SQE75591.1\|261026_261464_+\|holin-like-protein	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	2.74631e-64
LS483314.1\|SQE75598.1\|267783_268188_-\|Ribose-ABC-transport-system,-high-affinity-permease-RbsD	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	2.3935e-68

>LS483314.1|SQE75595.1|263925_265362_+|6-phospho-beta-glucosidase
MTKLPQNFMWGGALAANQFEGGYDKGGKGLSVIDVMTSGAHGKARQITESIDPNHYYPNHEGIDFYHRYKEDIALFKEMGLKCLRTSIAWTRIFPNGDEGVPNEEGLAFYDRIFDELIAQGIEPVVTLSHFEMPLHLAKHYGGFRNREVVDYFVHFARVVFERYKDKVTYWMTFNEINNQMDTSNPIFLWTNSGVALTENDNPEEVLYQVAHHELLASALAVRLGKEINPKFKIGTMISHVPIYPYSCHPKDMMEAQIANRLRFFFPDVQVRGYYPSYAKKMLARKGYDVGWQEGDDSILQQGTVDYIGFSYYMSTAVKHDVDTTVENNIVNGGLNHSVENPHIATSDWGWAIDPDGLRYTLNVLYDRYQLPLFIVENGFGAVDEVVDGHIHDDYRIEYLKAHITAAIEAVDQDGVDLIGYTPWGIIDIVSFTTGEMKKRYGLIYVDRDNDGHGTMERLKKDSFYWYQQVIASNGDKL
>LS483314.1|SQE75594.1|263118_263910_+|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component
MSNKYKEQAQDILTAVGGVENIVDATYDTKCITIHMQHTIPSTANEVKQIVDVTSVAENDAQLVIKLNGNVDEVYQQLQRLIKNANVEESENTDNINSQDTSYTPQVKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEESKVIAPFNGLVSMIVPTKHAVGIQSEDGVDIVIHIGVNTVDLEGKGFKCFVKQNDHVEAGQTLLQFDQQYIQQQGYNADVIVVISNSADLGKVELTMNEIITTEDVIFKIFKN
>LS483314.1|SQE75593.1|262265_262970_-|Transcriptional-regulator,-GntR-family
MLKYEHIAKQLNAFIHQSNFKPGDKLPSVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
>LS483314.1|SQE75592.1|261456_262158_+|LrgA-associated-membrane-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>LS483314.1|SQE75591.1|261026_261464_+|holin-like-protein
MKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>LS483314.1|SQE75590.1|260167_260908_+|Autolysis-response-regulater-LytR
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSANAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>LS483314.1|SQE75589.1|258410_260165_+|Autolysis-histidine-kinase-LytS
MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDMLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>LS483314.1|SQE75588.1|257491_258166_+|DnrN
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>LS483314.1|SQE75587.1|255626_257348_+|glycosyl-transferase
MMKFSVIVPTYNSEKYMTELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISLKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>LS483314.1|SQE75586.1|253905_255594_+|Putative-polyribitolphosphotransferase
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>LS483314.1|SQE75596.1|265829_266591_-|SAM-dependent-methyltransferase
MSKEAGHTFLAKLGKTRLRPGGKEATDWLIQQGAFSQDKQVLEVACNMCTTSIYLAHTYGCHIQGVDINKKALEKAQENISAAGLESYIQVQQANAVKLPFDDNQFDIVLNEAMLTMLPIAIKEKALREYYRVLKPGGILLTHDIVIVNESHATHVVKSLSAAINVNVSPQTKLGWLDLYNQAGFNHVHYHTGPMSLMTPKGLIYDEGIVGTIKIINNALKKENRPMFCKMFKTMTKLRKDMNYITFVAKKED
>LS483314.1|SQE75597.1|266841_267756_-|Ribokinase
MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKAAHIDTSYIIKTTEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFIVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSLGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQV
>LS483314.1|SQE75598.1|267783_268188_-|Ribose-ABC-transport-system,-high-affinity-permease-RbsD
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIGVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>LS483314.1|SQE75599.1|268202_269084_-|sugar-transport-protein
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAIILAVVTSSGFPTGTNLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
>LS483314.1|SQE75600.1|269315_270314_-|ribose-operon-repressor,-putative
MKKVSIKDVAREAGVSVTTVSHILNHNDSRFSATTIKNVHAVSERLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSSLMQSIHDHKPSDVDLCFLTSTATDLYDNIKHLIDRGIDGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTNEYQGGQLAAQHLIELGHNNMMIVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTELSKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAAYVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN
>LS483314.1|SQE75601.1|270797_272174_-|multidrug-resistance-protein-B
MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTSPAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMFASLLLIISDITALLIIGRILQGLSAAILLPSTVGVLNNQFKGDHLRRAISYLMISTVGGIGLAGVIGGLIATNFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLTQGFEQGWFSTFSIICLSIFSITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVLNSGLGVTVVFFIYAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLIIGPLFPVIGITIISMTSLQPSQYIIAVVIGFVICAIGNGLVATPGLTIAIFSMPNEKVGLATGLYKMSGTLGGAFGIALSTTVFSMLQLNYTPSVAATVTFIVSIILMMLGSLSAYMIIPKTVKS
>LS483314.1|SQE75602.1|272407_273400_+|choloylglycine-hydrolase
MCTGFTIQTLNNQVLLGRTMDYDYPLDGSPAVTPRNYRWTSRTGTTGQTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNEIVTWILGYTTSIEDMKQQASQIHVVAVYLNDIGEVPPLHYHVSDATGHSVEVSFKEGEVVIKDNPIGVLTNHPDLNWHYSNLRQYINISPYPATAKLLEGVTIEPLGNEAGTFGLPGGFTSTERFVRMAFMKANIAQNNDKEMDLMNAFYLLDAVNIPIGIVRPHDADNHYTMYQTVINLTTRTLYIKYYGSNEIVALKLTDDLINRKDMTIFKPEKHITIRKLNDNQ
>LS483314.1|SQE75603.1|273725_274676_+|peptidoglycan-hydrolase
MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNSPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQSR
>LS483314.1|SQE75604.1|274727_275387_-|ABC-transporter-ATP-binding-protein
MIEINNLSKRYRNKQIFNHLTMSFDSNRLTVLLGDNGAGKSTLLRMVAGIEKANDGTINYFGEKWNQRQIQNHIGYVPQDIALFEHMTVAENINFFKSLCKNPINDTTINEYLQQLNFDDTSAKVSTLSGGNKRKINILVGLLGQPRILILDEPTVGIDLKSRHDIHQLLNIMKSKCLIILTTHHLDEVEALADDIKLIGQDPFYQHVLEDKQWAYTYY
>LS483314.1|SQE75605.1|275400_276321_-|ABC-2-family-transporter-protein
MKPYIQLVVFKQWLQYILLVTTIVIALVLIGIGYRVAHDNFKIPITIQDLDQTTASKSFVNKIKQSDYVTIKKVDEDESYIEDDVTKKEAILSMQIPKGFSQKLKENSLKETIQLYGRDDFIGGIAVEIVSSSLYEQQIPNIIYEHLEDMKQHQSIDAINKSYHKHTPESKIKFVSLTKQAQHSISISLIFAVILFVSAVQVVLHYRLNQQAALQRLSQYHLSRFKLYSTYVMTHTILLLLVLLAVSLYLSQPLSLIFYLKSLLLILIYEIGIVFILFHIQTISHRLFMTFIYALAMGIVYLIIFM

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Crispr_ID: LS483314_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_3

689175-689273

Orphan

Consensus_repeat	Method
AAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_3

>merge|LS483314|3|689175-689273|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGG

>LS483314|3|3|689175-689273|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCAT
AAGAGCCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE75980.1\|683076_685227_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
LS483314.1\|SQE75989.1\|691910_692354_+\|aminoglycoside-6'-N-Acetyltransferase-IK	unknown	unknown	gnl\|CDD\|366181
LS483314.1\|SQE75992.1\|693326_693869_+\|Acetyltransferase-GNAT-family	unknown	unknown	gnl\|CDD\|379112
LS483314.1\|SQE75988.1\|691094_691784_-\|membrane-protein	unknown	unknown	unknown
LS483314.1\|SQE75986.1\|689290_690511_+\|sugar-efflux-transporter	unknown	unknown	gnl\|CDD\|341024
LS483314.1\|SQE75976.1\|678348_678966_+\|phosphate-transport-regulator,-putative	unknown	unknown	gnl\|CDD\|224310
LS483314.1\|SQE75978.1\|680577_681375_-\|Secretory-antigen-precursor-SsaA	unknown	unknown	gnl\|CDD\|226451
LS483314.1\|SQE75994.1\|694532_694991_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
LS483314.1\|SQE75979.1\|681735_682380_+\|transporter	unknown	unknown	gnl\|CDD\|223742
LS483314.1\|SQE75983.1\|686637_687111_+\|cupin-superfamily-protein	unknown	unknown	gnl\|CDD\|226072
LS483314.1\|SQE75987.1\|690507_690996_+\|putative-glycine-zipper-protein	unknown	unknown	gnl\|CDD\|225395
LS483314.1\|SQE75981.1\|685306_685732_+\|accessory-regulator	unknown	unknown	gnl\|CDD\|130944
LS483314.1\|SQE75984.1\|687463_688108_+\|Protein-of-uncharacterised-function-(DUF402)	unknown	unknown	gnl\|CDD\|225188
LS483314.1\|SQE75977.1\|678981_679989_+\|low-affinity-inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
LS483314.1\|SQE75991.1\|692947_693247_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483314.1\|SQE75993.1\|693964_694531_-\|Lysine-decarboxylase-family	unknown	unknown	gnl\|CDD\|224527
LS483314.1\|SQE75985.1\|688223_689090_+\|hydrogen-peroxide-inducible-genes-activator	unknown	unknown	gnl\|CDD\|223656
LS483314.1\|SQE75982.1\|685921_686638_+\|putative-DUF28-containing-protein	unknown	unknown	gnl\|CDD\|237084
LS483314.1\|SQE75995.1\|694993_695677_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|234750
LS483314.1\|SQE75990.1\|692420_692810_+\|lipoprotein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE75980.1\|683076_685227_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.12683e-20
LS483314.1\|SQE75989.1\|691910_692354_+\|aminoglycoside-6'-N-Acetyltransferase-IK	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.77401e-13
LS483314.1\|SQE75992.1\|693326_693869_+\|Acetyltransferase-GNAT-family	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.26713e-28
LS483314.1\|SQE75986.1\|689290_690511_+\|sugar-efflux-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.30756e-101
LS483314.1\|SQE75976.1\|678348_678966_+\|phosphate-transport-regulator,-putative	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.27806e-54
LS483314.1\|SQE75978.1\|680577_681375_-\|Secretory-antigen-precursor-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.44834e-40
LS483314.1\|SQE75994.1\|694532_694991_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.18273e-77
LS483314.1\|SQE75979.1\|681735_682380_+\|transporter	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	1.16188e-32
LS483314.1\|SQE75983.1\|686637_687111_+\|cupin-superfamily-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	7.22926e-75
LS483314.1\|SQE75987.1\|690507_690996_+\|putative-glycine-zipper-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	4.76789e-44
LS483314.1\|SQE75981.1\|685306_685732_+\|accessory-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	3.46093e-23
LS483314.1\|SQE75984.1\|687463_688108_+\|Protein-of-uncharacterised-function-(DUF402)	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	6.61513e-90
LS483314.1\|SQE75977.1\|678981_679989_+\|low-affinity-inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	1.90489e-104
LS483314.1\|SQE75993.1\|693964_694531_-\|Lysine-decarboxylase-family	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	5.44842e-61
LS483314.1\|SQE75985.1\|688223_689090_+\|hydrogen-peroxide-inducible-genes-activator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.04787e-39
LS483314.1\|SQE75982.1\|685921_686638_+\|putative-DUF28-containing-protein	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
LS483314.1\|SQE75995.1\|694993_695677_-\|Uncharacterised-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000491798

>LS483314.1|SQE75985.1|688223_689090_+|hydrogen-peroxide-inducible-genes-activator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
>LS483314.1|SQE75984.1|687463_688108_+|Protein-of-uncharacterised-function-(DUF402)
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLYVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNHQKPQNKTNIEKSKQIKPKQYNQTKNHQQQKKN
>LS483314.1|SQE75983.1|686637_687111_+|cupin-superfamily-protein
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>LS483314.1|SQE75982.1|685921_686638_+|putative-DUF28-containing-protein
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>LS483314.1|SQE75981.1|685306_685732_+|accessory-regulator
MAEKFKIIMTEALSLYIWGCNILNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNNDDISKFNALFEDVEQFLNI
>LS483314.1|SQE75980.1|683076_685227_+|AraC-family-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADIRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKYNKCLMLKPEPLVGKMVQEVKEIILNYIEHYKNHLTDVIHIDEDKFETPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESDLKIAFNINDIETTYFVEEAFMSVFRQISPNELSNHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFEKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQAFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSDNSLNINVTFNALYIIKIGKK
>LS483314.1|SQE75979.1|681735_682380_+|transporter
MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>LS483314.1|SQE75978.1|680577_681375_-|Secretory-antigen-precursor-SsaA
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNSSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>LS483314.1|SQE75977.1|678981_679989_+|low-affinity-inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLACLLFYILNLFF
>LS483314.1|SQE75976.1|678348_678966_+|phosphate-transport-regulator,-putative
MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEETAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS
>LS483314.1|SQE75986.1|689290_690511_+|sugar-efflux-transporter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLHTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>LS483314.1|SQE75987.1|690507_690996_+|putative-glycine-zipper-protein
MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>LS483314.1|SQE75988.1|691094_691784_-|membrane-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMTNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKNGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>LS483314.1|SQE75989.1|691910_692354_+|aminoglycoside-6'-N-Acetyltransferase-IK
MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKNNLPMISLNKDLGYQVSHVKMYKDID
>LS483314.1|SQE75990.1|692420_692810_+|lipoprotein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKEASQDKQSKDQIKSSDKDNHKKPTSTDKDQKANDKHQS
>LS483314.1|SQE75991.1|692947_693247_+|Uncharacterised-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>LS483314.1|SQE75992.1|693326_693869_+|Acetyltransferase-GNAT-family
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKETHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>LS483314.1|SQE75993.1|693964_694531_-|Lysine-decarboxylase-family
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMDAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>LS483314.1|SQE75994.1|694532_694991_-|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVVTQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLKVIHRIKELD
>LS483314.1|SQE75995.1|694993_695677_-|Uncharacterised-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483314_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_4

742069-742151

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_4

>merge|LS483314|4|742069-742151|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LS483314|4|4|742069-742151|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE76043.1\|747818_748217_+\|Nrdi	unknown	unknown	gnl\|CDD\|224694
LS483314.1\|SQE76042.1\|746151_747018_-\|Integral-membrane-domain-protein	unknown	unknown	gnl\|CDD\|223769
LS483314.1\|SQE76046.1\|752039_753053_+\|FatD	unknown	unknown	gnl\|CDD\|226965
LS483314.1\|SQE76039.1\|742599_743517_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|224513
LS483314.1\|SQE76030.1\|729714_730719_+\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
LS483314.1\|SQE76045.1\|750402_751374_+\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
LS483314.1\|SQE76038.1\|741377_741920_+\|5'-3'-deoxyribonucleotidase,-putative	unknown	unknown	gnl\|CDD\|226895
LS483314.1\|SQE76032.1\|733408_735286_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|223562
LS483314.1\|SQE76031.1\|731192_733133_+\|glycerol-phosphate-lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
LS483314.1\|SQE76048.1\|753992_754754_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
LS483314.1\|SQE76037.1\|740956_741238_-\|Protein-of-uncharacterised-function-(DUF3125)	unknown	unknown	unknown
LS483314.1\|SQE76035.1\|738270_739785_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	unknown	unknown	gnl\|CDD\|270328
LS483314.1\|SQE76034.1\|737300_738278_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	unknown	unknown	gnl\|CDD\|224050
LS483314.1\|SQE76047.1\|753039_753996_+\|Iron-compound-ABC-uptake-transporter-permease-protein	unknown	unknown	gnl\|CDD\|226964
LS483314.1\|SQE76040.1\|743785_745291_-\|Di/tripeptide-permease-YjdL	unknown	unknown	gnl\|CDD\|225646
LS483314.1\|SQE76036.1\|740024_741083_+\|histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|235106
LS483314.1\|SQE76041.1\|745631_746132_-\|NADPH-dependent-preQ0-reductase	unknown	unknown	gnl\|CDD\|223851
LS483314.1\|SQE76044.1\|748179_750285_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
LS483314.1\|SQE76029.1\|729020_729731_+\|Urea-amidolyase	unknown	unknown	gnl\|CDD\|224960
LS483314.1\|SQE76033.1\|735300_737079_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE76043.1\|747818_748217_+\|Nrdi	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
LS483314.1\|SQE76042.1\|746151_747018_-\|Integral-membrane-domain-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
LS483314.1\|SQE76039.1\|742599_743517_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	7.55646e-79
LS483314.1\|SQE76030.1\|729714_730719_+\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	3.65343e-143
LS483314.1\|SQE76045.1\|750402_751374_+\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
LS483314.1\|SQE76038.1\|741377_741920_+\|5'-3'-deoxyribonucleotidase,-putative	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.69885e-107
LS483314.1\|SQE76032.1\|733408_735286_+\|ABC-transporter	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
LS483314.1\|SQE76031.1\|731192_733133_+\|glycerol-phosphate-lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
LS483314.1\|SQE76048.1\|753992_754754_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.31412e-150
LS483314.1\|SQE76046.1\|752039_753053_+\|FatD	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	9.1873e-150
LS483314.1\|SQE76035.1\|738270_739785_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
LS483314.1\|SQE76034.1\|737300_738278_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
LS483314.1\|SQE76047.1\|753039_753996_+\|Iron-compound-ABC-uptake-transporter-permease-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
LS483314.1\|SQE76040.1\|743785_745291_-\|Di/tripeptide-permease-YjdL	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
LS483314.1\|SQE76036.1\|740024_741083_+\|histidinol-phosphate-aminotransferase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
LS483314.1\|SQE76041.1\|745631_746132_-\|NADPH-dependent-preQ0-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
LS483314.1\|SQE76044.1\|748179_750285_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
LS483314.1\|SQE76029.1\|729020_729731_+\|Urea-amidolyase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	6.58993e-93
LS483314.1\|SQE76033.1\|735300_737079_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0

>LS483314.1|SQE76038.1|741377_741920_+|5'-3'-deoxyribonucleotidase,-putative
MTRKSIAIDMDEVLADTLGEIIDVVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>LS483314.1|SQE76037.1|740956_741238_-|Protein-of-uncharacterised-function-(DUF3125)
MIFSQNLFRRPTPARLTRIEKILLQAHFRSVNYCQYNFVEHRTLISVPLPTYYSYLKFDKTSNILSFCSLKPIVILTPVGNGRVIHPTFKSAS
>LS483314.1|SQE76036.1|740024_741083_+|histidinol-phosphate-aminotransferase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPLHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVTALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>LS483314.1|SQE76035.1|738270_739785_+|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>LS483314.1|SQE76034.1|737300_738278_+|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>LS483314.1|SQE76033.1|735300_737079_+|ATP-dependent-DNA-helicase-RecQ
MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>LS483314.1|SQE76032.1|733408_735286_+|ABC-transporter
MEAYKIEHLNKSYADKIIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQTVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>LS483314.1|SQE76031.1|731192_733133_+|glycerol-phosphate-lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>LS483314.1|SQE76030.1|729714_730719_+|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRIGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>LS483314.1|SQE76029.1|729020_729731_+|Urea-amidolyase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSIMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>LS483314.1|SQE76039.1|742599_743517_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMSHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>LS483314.1|SQE76040.1|743785_745291_-|Di/tripeptide-permease-YjdL
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>LS483314.1|SQE76041.1|745631_746132_-|NADPH-dependent-preQ0-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>LS483314.1|SQE76042.1|746151_747018_-|Integral-membrane-domain-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>LS483314.1|SQE76043.1|747818_748217_+|Nrdi
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>LS483314.1|SQE76044.1|748179_750285_+|ribonucleotide-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFNYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>LS483314.1|SQE76045.1|750402_751374_+|ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>LS483314.1|SQE76046.1|752039_753053_+|FatD
MIMIIIDLKGEKFVMKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>LS483314.1|SQE76047.1|753039_753996_+|Iron-compound-ABC-uptake-transporter-permease-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>LS483314.1|SQE76048.1|753992_754754_+|Iron-compound-ABC-uptake-transporter-ATP-binding-protein
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: LS483314_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_5

847607-847688

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_5

>merge|LS483314|5|847607-847688|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LS483314|5|5|847607-847688|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE76138.1\|843599_844316_+\|3-dehydroquinate-dehydratase-I-AroC-I	unknown	unknown	gnl\|CDD\|184156
LS483314.1\|SQE76144.1\|846624_847503_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|226395
LS483314.1\|SQE76136.1\|842136_842631_-\|lactococcal-prophage-ps3-protein-05	unknown	unknown	gnl\|CDD\|372596
LS483314.1\|SQE76137.1\|843029_843452_-\|Organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
LS483314.1\|SQE76146.1\|848735_849032_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LS483314.1\|SQE76140.1\|845087_845408_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LS483314.1\|SQE76154.1\|856076_857318_+\|Selenocysteine-lyase	unknown	unknown	gnl\|CDD\|131034
LS483314.1\|SQE76147.1\|849281_850307_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
LS483314.1\|SQE76153.1\|854654_855962_+\|Iron-sulfur-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
LS483314.1\|SQE76141.1\|845551_845908_+\|Arsenate-reductase	unknown	unknown	gnl\|CDD\|239334
LS483314.1\|SQE76152.1\|853794_854556_+\|iron-sulfur-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
LS483314.1\|SQE76149.1\|851012_851834_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
LS483314.1\|SQE76142.1\|846065_846446_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LS483314.1\|SQE76145.1\|848353_848743_+\|DNA-primase/-small-primase-like-protein	unknown	unknown	gnl\|CDD\|224572
LS483314.1\|SQE76148.1\|850299_850995_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
LS483314.1\|SQE76135.1\|841364_841982_-\|LysE-type-translocator-protein	unknown	unknown	gnl\|CDD\|224198
LS483314.1\|SQE76150.1\|852187_852382_+\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
LS483314.1\|SQE76151.1\|852615_853467_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224946
LS483314.1\|SQE76143.1\|846509_846623_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483314.1\|SQE76139.1\|844398_844938_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE76138.1\|843599_844316_+\|3-dehydroquinate-dehydratase-I-AroC-I	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	5.95463e-148
LS483314.1\|SQE76144.1\|846624_847503_+\|Putative-cytosolic-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.72543e-74
LS483314.1\|SQE76136.1\|842136_842631_-\|lactococcal-prophage-ps3-protein-05	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
LS483314.1\|SQE76137.1\|843029_843452_-\|Organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
LS483314.1\|SQE76146.1\|848735_849032_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
LS483314.1\|SQE76140.1\|845087_845408_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
LS483314.1\|SQE76154.1\|856076_857318_+\|Selenocysteine-lyase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LS483314.1\|SQE76150.1\|852187_852382_+\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
LS483314.1\|SQE76153.1\|854654_855962_+\|Iron-sulfur-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	9.69519e-136
LS483314.1\|SQE76141.1\|845551_845908_+\|Arsenate-reductase	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
LS483314.1\|SQE76152.1\|853794_854556_+\|iron-sulfur-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	6.17029e-150
LS483314.1\|SQE76149.1\|851012_851834_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
LS483314.1\|SQE76139.1\|844398_844938_+\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
LS483314.1\|SQE76145.1\|848353_848743_+\|DNA-primase/-small-primase-like-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
LS483314.1\|SQE76148.1\|850299_850995_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
LS483314.1\|SQE76135.1\|841364_841982_-\|LysE-type-translocator-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.40612e-61
LS483314.1\|SQE76151.1\|852615_853467_-\|membrane-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
LS483314.1\|SQE76142.1\|846065_846446_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.28962e-69
LS483314.1\|SQE76147.1\|849281_850307_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170

>LS483314.1|SQE76144.1|846624_847503_+|Putative-cytosolic-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>LS483314.1|SQE76143.1|846509_846623_+|Uncharacterised-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>LS483314.1|SQE76142.1|846065_846446_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSKMIGE
>LS483314.1|SQE76141.1|845551_845908_+|Arsenate-reductase
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>LS483314.1|SQE76140.1|845087_845408_-|Thioredoxin
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>LS483314.1|SQE76139.1|844398_844938_+|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>LS483314.1|SQE76138.1|843599_844316_+|3-dehydroquinate-dehydratase-I-AroC-I
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>LS483314.1|SQE76137.1|843029_843452_-|Organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>LS483314.1|SQE76136.1|842136_842631_-|lactococcal-prophage-ps3-protein-05
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>LS483314.1|SQE76135.1|841364_841982_-|LysE-type-translocator-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLIF
>LS483314.1|SQE76145.1|848353_848743_+|DNA-primase/-small-primase-like-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>LS483314.1|SQE76146.1|848735_849032_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>LS483314.1|SQE76147.1|849281_850307_+|Methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>LS483314.1|SQE76148.1|850299_850995_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>LS483314.1|SQE76149.1|851012_851834_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>LS483314.1|SQE76150.1|852187_852382_+|CsbD-like-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>LS483314.1|SQE76151.1|852615_853467_-|membrane-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>LS483314.1|SQE76152.1|853794_854556_+|iron-sulfur-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLIMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>LS483314.1|SQE76153.1|854654_855962_+|Iron-sulfur-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>LS483314.1|SQE76154.1|856076_857318_+|Selenocysteine-lyase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

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Crispr_ID: LS483314_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_6

1159871-1159956

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_6

>merge|LS483314|6|1159871-1159956|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>LS483314|6|6|1159871-1159956|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE76467.1\|1161775_1162501_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171855
LS483314.1\|SQE76466.1\|1160955_1161681_-\|putative-exotoxin	unknown	unknown	gnl\|CDD\|106307
LS483314.1\|SQE76470.1\|1165066_1166623_+\|Arginine/ornithine-antiporter-ArcD	unknown	unknown	gnl\|CDD\|224207
LS483314.1\|SQE76456.1\|1153739_1154246_+\|membrane-protein	unknown	unknown	unknown
LS483314.1\|SQE76472.1\|1167462_1168410_-\|putative-permease	unknown	unknown	gnl\|CDD\|187765
LS483314.1\|SQE76459.1\|1156154_1156340_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483314.1\|SQE76465.1\|1160545_1160848_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171995
LS483314.1\|SQE76458.1\|1155152_1155503_+\|exported-protein	unknown	unknown	gnl\|CDD\|371594
LS483314.1\|SQE76455.1\|1152667_1153069_-\|FPRL1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
LS483314.1\|SQE76460.1\|1156961_1157195_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483314.1\|SQE76463.1\|1159433_1159631_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483314.1\|SQE76461.1\|1157671_1158631_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
LS483314.1\|SQE76462.1\|1159303_1159450_+\|Doubtful-CDS.-No-database-matches	unknown	unknown	unknown
LS483314.1\|SQE76473.1\|1168658_1168847_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225382
LS483314.1\|SQE76468.1\|1162938_1163940_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
LS483314.1\|SQE76471.1\|1166930_1167158_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483314.1\|SQE76457.1\|1154504_1155002_+\|Extracellular-fibrinogen-binding-protein-Efb	unknown	unknown	gnl\|CDD\|289007
LS483314.1\|SQE76469.1\|1163959_1164895_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
LS483314.1\|SQE76464.1\|1160131_1160524_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171995
LS483314.1\|SQE76454.1\|1151968_1152298_+\|Extracellular-fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE76467.1\|1161775_1162501_-\|Exotoxin	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
LS483314.1\|SQE76466.1\|1160955_1161681_-\|putative-exotoxin	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148
LS483314.1\|SQE76470.1\|1165066_1166623_+\|Arginine/ornithine-antiporter-ArcD	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
LS483314.1\|SQE76454.1\|1151968_1152298_+\|Extracellular-fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.51827e-21
LS483314.1\|SQE76472.1\|1167462_1168410_-\|putative-permease	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	7.44089e-84
LS483314.1\|SQE76465.1\|1160545_1160848_-\|Exotoxin	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	2.26605e-57
LS483314.1\|SQE76458.1\|1155152_1155503_+\|exported-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	8.46865e-41
LS483314.1\|SQE76464.1\|1160131_1160524_-\|Exotoxin	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	2.99808e-80
LS483314.1\|SQE76461.1\|1157671_1158631_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.4958e-141
LS483314.1\|SQE76473.1\|1168658_1168847_+\|DNA-binding-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
LS483314.1\|SQE76455.1\|1152667_1153069_-\|FPRL1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	5.2726e-76
LS483314.1\|SQE76457.1\|1154504_1155002_+\|Extracellular-fibrinogen-binding-protein-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.84801e-27
LS483314.1\|SQE76469.1\|1163959_1164895_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
LS483314.1\|SQE76468.1\|1162938_1163940_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0

>LS483314.1|SQE76463.1|1159433_1159631_+|Uncharacterised-protein
MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>LS483314.1|SQE76462.1|1159303_1159450_+|Doubtful-CDS.-No-database-matches
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>LS483314.1|SQE76461.1|1157671_1158631_-|alpha-hemolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>LS483314.1|SQE76460.1|1156961_1157195_-|Uncharacterised-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>LS483314.1|SQE76459.1|1156154_1156340_-|Uncharacterised-protein
MNKHINKKASKLLEDYKKVQQRKSEETDKGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>LS483314.1|SQE76458.1|1155152_1155503_+|exported-protein
MKFKKYILTGTLALLLSSTAIATIEGNKADASSKKDYIIQSEFHDKRIAEELKSLLDQSYVNDLAAGSLNPYYKRTIMMNQYRAKAALKSNNFAKMAEAKVALENIYKEIDEIINR
>LS483314.1|SQE76457.1|1154504_1155002_+|Extracellular-fibrinogen-binding-protein-Efb
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
>LS483314.1|SQE76456.1|1153739_1154246_+|membrane-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>LS483314.1|SQE76455.1|1152667_1153069_-|FPRL1-inhibitory-protein
MKKNITKTIIASTVIAAGLSTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD
>LS483314.1|SQE76454.1|1151968_1152298_+|Extracellular-fibrinogen-binding-protein
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNAETVKKYNEYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>LS483314.1|SQE76464.1|1160131_1160524_-|Exotoxin
MFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>LS483314.1|SQE76465.1|1160545_1160848_-|Exotoxin
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNIN
>LS483314.1|SQE76466.1|1160955_1161681_-|putative-exotoxin
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>LS483314.1|SQE76467.1|1161775_1162501_-|Exotoxin
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>LS483314.1|SQE76468.1|1162938_1163940_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDNIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>LS483314.1|SQE76469.1|1163959_1164895_+|carbamate-kinase
MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>LS483314.1|SQE76470.1|1165066_1166623_+|Arginine/ornithine-antiporter-ArcD
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>LS483314.1|SQE76471.1|1166930_1167158_+|Uncharacterised-protein
MTHLTKVLVTLTGICVVLLFSKYFVAYANMVFDWNLRWYMLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>LS483314.1|SQE76472.1|1167462_1168410_-|putative-permease
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>LS483314.1|SQE76473.1|1168658_1168847_+|DNA-binding-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN

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Crispr_ID: LS483314_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_7

1768045-1768131

Orphan

Consensus_repeat	Method
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_7

>merge|LS483314|7|1768045-1768131|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACCATGCAAGTTGGGGTGGGCCCCAACATAGAA

>LS483314|7|7|1768045-1768131|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGACC
ATGCAAGTTGGGGTGGGCCCCAACATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE77149.1\|1774682_1775885_-\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680
LS483314.1\|SQE77145.1\|1770442_1771132_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
LS483314.1\|SQE77141.1\|1763610_1766808_-\|DNA-polymerase-III-alpha-subunit	unknown	unknown	gnl\|CDD\|223660
LS483314.1\|SQE77146.1\|1771306_1772362_+\|Proline-dipeptidase	unknown	unknown	gnl\|CDD\|223085
LS483314.1\|SQE77144.1\|1769724_1770138_+\|transcription-factor	unknown	unknown	gnl\|CDD\|366180
LS483314.1\|SQE77136.1\|1758698_1759667_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LS483314.1\|SQE77133.1\|1754627_1755434_-\|putative-transposase	unknown	unknown	gnl\|CDD\|226192
LS483314.1\|SQE77151.1\|1777042_1777537_-\|Thioredoxin-peroxidase	unknown	unknown	gnl\|CDD\|179055
LS483314.1\|SQE77147.1\|1772677_1773796_-\|alanine-dehydrogenase-2	unknown	unknown	gnl\|CDD\|240630
LS483314.1\|SQE77135.1\|1756919_1758677_-\|Pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
LS483314.1\|SQE77138.1\|1760879_1761737_-\|acetyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
LS483314.1\|SQE77139.1\|1761931_1763161_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
LS483314.1\|SQE77143.1\|1768221_1769520_-\|Cytosolic-protein-containing-multiple-CBS-domains	unknown	unknown	gnl\|CDD\|226594
LS483314.1\|SQE77152.1\|1777634_1778405_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182593
LS483314.1\|SQE77134.1\|1755451_1756279_-\|transposase-for-IS1272	unknown	unknown	gnl\|CDD\|226192
LS483314.1\|SQE77142.1\|1766828_1767770_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	unknown	unknown	gnl\|CDD\|223691
LS483314.1\|SQE77137.1\|1759935_1760880_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	unknown	unknown	gnl\|CDD\|235580
LS483314.1\|SQE77148.1\|1773936_1774437_+\|universal-stress-protein-family	unknown	unknown	gnl\|CDD\|366180
LS483314.1\|SQE77132.1\|1753233_1754595_+\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|224038
LS483314.1\|SQE77150.1\|1775972_1776920_-\|adenine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|223897

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE77149.1\|1774682_1775885_-\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LS483314.1\|SQE77145.1\|1770442_1771132_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.10209e-133
LS483314.1\|SQE77141.1\|1763610_1766808_-\|DNA-polymerase-III-alpha-subunit	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
LS483314.1\|SQE77146.1\|1771306_1772362_+\|Proline-dipeptidase	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	9.25455e-126
LS483314.1\|SQE77144.1\|1769724_1770138_+\|transcription-factor	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
LS483314.1\|SQE77136.1\|1758698_1759667_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LS483314.1\|SQE77133.1\|1754627_1755434_-\|putative-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.87239e-28
LS483314.1\|SQE77151.1\|1777042_1777537_-\|Thioredoxin-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	8.69777e-99
LS483314.1\|SQE77147.1\|1772677_1773796_-\|alanine-dehydrogenase-2	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
LS483314.1\|SQE77135.1\|1756919_1758677_-\|Pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
LS483314.1\|SQE77138.1\|1760879_1761737_-\|acetyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
LS483314.1\|SQE77139.1\|1761931_1763161_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
LS483314.1\|SQE77143.1\|1768221_1769520_-\|Cytosolic-protein-containing-multiple-CBS-domains	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
LS483314.1\|SQE77152.1\|1777634_1778405_-\|membrane-protein	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	2.34437e-38
LS483314.1\|SQE77134.1\|1755451_1756279_-\|transposase-for-IS1272	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.36382e-40
LS483314.1\|SQE77142.1\|1766828_1767770_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	2.09048e-98
LS483314.1\|SQE77137.1\|1759935_1760880_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
LS483314.1\|SQE77148.1\|1773936_1774437_+\|universal-stress-protein-family	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
LS483314.1\|SQE77132.1\|1753233_1754595_+\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
LS483314.1\|SQE77150.1\|1775972_1776920_-\|adenine-specific-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.04193e-56

>LS483314.1|SQE77142.1|1766828_1767770_-|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>LS483314.1|SQE77141.1|1763610_1766808_-|DNA-polymerase-III-alpha-subunit
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQDVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEVNQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKKTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQKGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVMLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>LS483314.1|SQE77139.1|1761931_1763161_-|NADP-dependent-malic-enzyme
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>LS483314.1|SQE77138.1|1760879_1761737_-|acetyl-CoA-carboxylase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>LS483314.1|SQE77137.1|1759935_1760880_-|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDVEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>LS483314.1|SQE77136.1|1758698_1759667_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>LS483314.1|SQE77135.1|1756919_1758677_-|Pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>LS483314.1|SQE77134.1|1755451_1756279_-|transposase-for-IS1272
MYKIYNMTQLTLPIETSVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQDQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDNNSIFIDGTKVEANANRYTFVWKKSIQNHESKLNENSKTLYRDLVEEKIIPEIKEDGDSDLTIEEIDLIGSHLDKEIEDLNHSIENEDCAQIRKQTRKKITEIKKFKKKFDDYSERKNKYEEQKSILKDRNSFSKTDLIMMQLL
>LS483314.1|SQE77133.1|1754627_1755434_-|putative-transposase
MKNGQLKPGYNLQIATNSQFVLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSGIFNTQNWKYDELNDEFICPNNKRIGFKRYAYRNDRYGFKRDFKLYECDDCSSCSLRHQCMKPNSKSNKKIMKNYNWEYFKVQINQKLSEPETKKIYSQRKIDVEPAFGFMKAILGFTRMSVRGINKVKRELGFVLMALNIRKIAAQRAVHYKIHIKKADFYQIINRNQLFYIA
>LS483314.1|SQE77132.1|1753233_1754595_+|D-serine/D-alanine/glycine-transporter
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>LS483314.1|SQE77143.1|1768221_1769520_-|Cytosolic-protein-containing-multiple-CBS-domains
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>LS483314.1|SQE77144.1|1769724_1770138_+|transcription-factor
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>LS483314.1|SQE77145.1|1770442_1771132_-|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKVNFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>LS483314.1|SQE77146.1|1771306_1772362_+|Proline-dipeptidase
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIILEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>LS483314.1|SQE77147.1|1772677_1773796_-|alanine-dehydrogenase-2
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>LS483314.1|SQE77148.1|1773936_1774437_+|universal-stress-protein-family
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>LS483314.1|SQE77149.1|1774682_1775885_-|Acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>LS483314.1|SQE77150.1|1775972_1776920_-|adenine-specific-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEIDIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINVLKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>LS483314.1|SQE77151.1|1777042_1777537_-|Thioredoxin-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>LS483314.1|SQE77152.1|1777634_1778405_-|membrane-protein
MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLTSTIKFIRSGKVDLFVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFTFKKAIIFAALFILIGFYDGFVGGGTGSFMLFVLLIFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLIMAISMIAGSYAGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFV

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Crispr_ID: LS483314_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483314_8

2617661-2617742

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483314_8

>merge|LS483314|8|2617661-2617742|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>LS483314|8|8|2617661-2617742|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483314.1\|SQE78577.1\|2615707_2616295_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LS483314.1\|SQE78579.1\|2616672_2616993_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483314.1\|SQE78594.1\|2622860_2623751_-\|Putative-GTPases-(G3E-family)	unknown	unknown	gnl\|CDD\|223597
LS483314.1\|SQE78584.1\|2618240_2619062_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187561
LS483314.1\|SQE78596.1\|2623847_2625194_-\|ferrous-iron-transporter-protein-B	unknown	unknown	gnl\|CDD\|223447
LS483314.1\|SQE78598.1\|2625181_2626288_-\|monooxygenase	unknown	unknown	gnl\|CDD\|379355
LS483314.1\|SQE78575.1\|2614260_2615316_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|226167
LS483314.1\|SQE78568.1\|2608736_2609504_-\|Secretory-antigen-precursor-SsaA	unknown	unknown	gnl\|CDD\|226451
LS483314.1\|SQE78590.1\|2620853_2621864_+\|5-carboxyvanillic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|225070
LS483314.1\|SQE78573.1\|2612951_2613653_-\|Immunodominant-staphylococcal-antigen-A-precursor	unknown	unknown	gnl\|CDD\|381607
LS483314.1\|SQE78581.1\|2617212_2617443_+\|putative-DUF896-containing-protein	unknown	unknown	gnl\|CDD\|226677
LS483314.1\|SQE78589.1\|2620062_2620767_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187585
LS483314.1\|SQE78585.1\|2619186_2619381_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226806
LS483314.1\|SQE78592.1\|2621883_2622714_+\|Esterase/Lipase	unknown	unknown	gnl\|CDD\|223669
LS483314.1\|SQE78572.1\|2612187_2612676_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|379228
LS483314.1\|SQE78566.1\|2606587_2608081_-\|Phytoene-desaturase,-neurosporene-or-lycopene-producing-/-4,4-diapolycopene-oxidase	unknown	unknown	gnl\|CDD\|224154
LS483314.1\|SQE78567.1\|2608073_2608571_-\|Glycosyl-4,4-diaponeurosporenoate-acyltransferase-precursor	unknown	unknown	unknown
LS483314.1\|SQE78587.1\|2619512_2620070_+\|Transcriptional-regulator,-TetR-family	unknown	unknown	gnl\|CDD\|224228
LS483314.1\|SQE78582.1\|2617846_2618224_-\|glyoxalase	unknown	unknown	gnl\|CDD\|226134
LS483314.1\|SQE78570.1\|2609864_2611676_-\|O-acetyltransferase-oatA	unknown	unknown	gnl\|CDD\|224748

Protein	Function_ID	Function_description	E-value
LS483314.1\|SQE78577.1\|2615707_2616295_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.60542e-07
LS483314.1\|SQE78594.1\|2622860_2623751_-\|Putative-GTPases-(G3E-family)	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.17569e-76
LS483314.1\|SQE78584.1\|2618240_2619062_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.56436e-84
LS483314.1\|SQE78598.1\|2625181_2626288_-\|monooxygenase	gnl\|CDD\|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	4.45347e-126
LS483314.1\|SQE78575.1\|2614260_2615316_-\|membrane-spanning-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.38046e-117
LS483314.1\|SQE78568.1\|2608736_2609504_-\|Secretory-antigen-precursor-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.0489e-31
LS483314.1\|SQE78590.1\|2620853_2621864_+\|5-carboxyvanillic-acid-decarboxylase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	7.39377e-78
LS483314.1\|SQE78566.1\|2606587_2608081_-\|Phytoene-desaturase,-neurosporene-or-lycopene-producing-/-4,4-diapolycopene-oxidase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.55155e-133
LS483314.1\|SQE78581.1\|2617212_2617443_+\|putative-DUF896-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	6.01061e-31
LS483314.1\|SQE78589.1\|2620062_2620767_+\|short-chain-dehydrogenase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.08524e-67
LS483314.1\|SQE78585.1\|2619186_2619381_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226806	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown].	4.58074e-18
LS483314.1\|SQE78592.1\|2621883_2622714_+\|Esterase/Lipase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.54673e-18
LS483314.1\|SQE78596.1\|2623847_2625194_-\|ferrous-iron-transporter-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.44208e-93
LS483314.1\|SQE78573.1\|2612951_2613653_-\|Immunodominant-staphylococcal-antigen-A-precursor	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.19038e-06
LS483314.1\|SQE78572.1\|2612187_2612676_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.6785e-11
LS483314.1\|SQE78587.1\|2619512_2620070_+\|Transcriptional-regulator,-TetR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.50396e-13
LS483314.1\|SQE78582.1\|2617846_2618224_-\|glyoxalase	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.45544e-58
LS483314.1\|SQE78570.1\|2609864_2611676_-\|O-acetyltransferase-oatA	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	6.58134e-84

>LS483314.1|SQE78581.1|2617212_2617443_+|putative-DUF896-containing-protein
MKILDRINELANKEKVQPLTVAEKQEQHALRQDYLSMIRGQVLTTFSTIKVVDPIGQDVTPDKVYDLRQQYGYIQN
>LS483314.1|SQE78579.1|2616672_2616993_+|Uncharacterised-protein
MSETDEPQGFERTHNILNINQSSLGVVTYITNKLKSTLKQHIIIARGKKRIDYRLSYNFYTTYYDNVEIKKIDCEYTYAMPIAILIRHTMSFDNAHFFAQLRHPVL
>LS483314.1|SQE78577.1|2615707_2616295_+|TetR-family-transcriptional-regulator
MLGSEQMMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQETADVFIDRNLPFLIHHIAHF
>LS483314.1|SQE78575.1|2614260_2615316_-|membrane-spanning-protein
MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAWMITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKMITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSALVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADIIYRKVFRLYTNDIFKFMG
>LS483314.1|SQE78573.1|2612951_2613653_-|Immunodominant-staphylococcal-antigen-A-precursor
MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSNVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRIGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINAAVKAYKAQGLGAWGF
>LS483314.1|SQE78572.1|2612187_2612676_-|Acetyltransferase,-GNAT-family
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNNGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
>LS483314.1|SQE78570.1|2609864_2611676_-|O-acetyltransferase-oatA
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTTKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK
>LS483314.1|SQE78568.1|2608736_2609504_-|Secretory-antigen-precursor-SsaA
MKKIVTATIATAGLATIAFAGHDAQAVEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH
>LS483314.1|SQE78567.1|2608073_2608571_-|Glycosyl-4,4-diaponeurosporenoate-acyltransferase-precursor
MKTMKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGERHD
>LS483314.1|SQE78566.1|2606587_2608081_-|Phytoene-desaturase,-neurosporene-or-lycopene-producing-/-4,4-diapolycopene-oxidase
MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTMPYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIEELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISNPYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGVTIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLLHLDTQRLNKLEREFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKTDHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLSGQQVADKINAREAKNRK
>LS483314.1|SQE78582.1|2617846_2618224_-|glyoxalase
MIQSMWFNLHVQDLEKSAQFYKALGFKINRNPQMLDKMVGIQIGQTTVILIENKHFQNVSQQSLNTEPNEVMISLGVNTNEEVDQLVNKVKEAGGAVVQEPTVSQGFYGAMFKDLDGHHFNFLVC
>LS483314.1|SQE78584.1|2618240_2619062_-|NAD-dependent-epimerase/dehydratase-family-protein
MKDILVIGATGKQGNAVVKQLLEDGWYVSALTRNKNNRKLSDIGHPHLSIVEGDLSDNVSLQSAMKGKYGLYSIQPIVKDDVSEELRQGMKIIEIAEQENIQHIVYSTAGGVNRNRTGPHFEVLAKIENRLMESNINATVIKPSFFMDNFLRIAKVEDERITLPEFINPNIKFTMISSIDIAKIASYIFAHPQSFTHQSIEIGSDEVTLSEAATIFSEVTGKSTVIEGEFVSGVAEKQWLEEKGYEVDFELMAEINPTRLSLSDWLKVQNYNK
>LS483314.1|SQE78585.1|2619186_2619381_-|Uncharacterized-protein-conserved-in-bacteria
MSLNKEQRRITCEELQAHFEASTLSVQMIAEKLNVTTEDVEKVLAMTAPLGIFSHQLQRFIHLV
>LS483314.1|SQE78587.1|2619512_2620070_+|Transcriptional-regulator,-TetR-family
MRKDAIENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFYQELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDEVERND
>LS483314.1|SQE78589.1|2620062_2620767_+|short-chain-dehydrogenase
MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYSVKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPLLEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQINAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
>LS483314.1|SQE78590.1|2620853_2621864_+|5-carboxyvanillic-acid-decarboxylase
MKSITFEEHYVIEDIQKETMNAISADPKGVPMKVMLEGLEKKTGFTNADELSHHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKTAENLGVPIYLHPAPVNSDIYQSYYKGNYPEVTAATFACFGYGWHIDVGIHAIHLVLSGIFDRYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHPVSYYFKNNFYITPSGMLTKPQFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNGAKLLGLSSNN
>LS483314.1|SQE78592.1|2621883_2622714_+|Esterase/Lipase
METLELQGAKLRYHQVGQGPVLIFIPGANGTGDIFLPLAEQLKDHFTVVAVDRRDYGESELTEPIPDSASNPDSDYRVKRDAQDIAELAKSLSDEPVYILGSSSGSIVAMHVLKDYPEVVKKIAFHEPPINTFLPDSTYWKDKNDYIVHQILTEGLEKGMKTFGETLNIAPIDAKMMSQPADTEEGRIEQYKRTMFWSKFEIRQYTHSDITLDDFTKYSDKITLLNGTDSRGSFPQDVNFYINKETGIPIVDIPGGHLGYIQKPEGFADVLLNLWG
>LS483314.1|SQE78594.1|2622860_2623751_-|Putative-GTPases-(G3E-family)
MKIVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDIPLSELTEGCICCAMKADVSEQLHQLYLKEQPDIVFIECSGIAEPVSVLDACLTPILAPFTTITHMIGVIDASMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKIDSADVETTSKLLKDLEVINPEADIQVGMHGSVTLPISVRQMTATSDNKHKSLHQMINHQFVQSPVKCTKAEFIKRLACLPSHIYRLKGFMTFEDTAHTYLIQFTQGQYELTPVAFSKKVPEYLVLIGKGISKEDYQCLEQ
>LS483314.1|SQE78596.1|2623847_2625194_-|ferrous-iron-transporter-protein-B
MHMLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLRIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII
>LS483314.1|SQE78598.1|2625181_2626288_-|monooxygenase
MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTLTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISVDDAFYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKNQMYLDDYSCCEVSCTC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483314_1	1.1\|142214\|34\|LS483314\|CRISPRCasFinder	142214-142247	34	LS483314.1	1464733-1464766	0	1.0
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	1245491-1245516	0	1.0
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	2732190-2732215	0	1.0
LS483314_8	8.1\|2617685\|34\|LS483314\|CRISPRCasFinder	2617685-2617718	34	LS483314.1	1464733-1464766	0	1.0
LS483314_1	1.1\|142214\|34\|LS483314\|CRISPRCasFinder	142214-142247	34	LS483314.1	1245379-1245412	1	0.971
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	847990-848024	1	0.971
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	848046-848080	1	0.971
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	1245458-1245492	1	0.971
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	2295430-2295464	1	0.971
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	2459942-2459976	1	0.971
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	2732214-2732248	1	0.971
LS483314_5	5.1\|847631\|34\|LS483314\|CRISPRCasFinder	847631-847664	34	LS483314.1	1464733-1464766	1	0.971
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	751596-751621	1	0.962
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	847966-847991	1	0.962
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	848022-848047	1	0.962
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	848078-848103	1	0.962
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	2732246-2732271	1	0.962
LS483314_8	8.1\|2617685\|34\|LS483314\|CRISPRCasFinder	2617685-2617718	34	LS483314.1	1245379-1245412	1	0.971
LS483314_1	1.1\|142214\|34\|LS483314\|CRISPRCasFinder	142214-142247	34	LS483314.1	1377233-1377266	2	0.941
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	751619-751653	2	0.943
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	1155900-1155934	2	0.943
LS483314_2	2.1\|265492\|35\|LS483314\|CRISPRCasFinder	265492-265526	35	LS483314.1	1159868-1159902	2	0.943
LS483314_5	5.1\|847631\|34\|LS483314\|CRISPRCasFinder	847631-847664	34	LS483314.1	1245379-1245412	2	0.941
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	751540-751565	2	0.923
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	751652-751677	2	0.923
LS483314_6	6.1\|1159901\|26\|LS483314\|CRISPRCasFinder	1159901-1159926	26	LS483314.1	2459974-2459999	2	0.923
LS483314_8	8.1\|2617685\|34\|LS483314\|CRISPRCasFinder	2617685-2617718	34	LS483314.1	1377233-1377266	2	0.941

1. spacer 1.1|142214|34|LS483314|CRISPRCasFinder matches to position: 1464733-1464766, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 1245491-1245516, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

3. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 2732190-2732215, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

4. spacer 8.1|2617685|34|LS483314|CRISPRCasFinder matches to position: 1464733-1464766, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

5. spacer 1.1|142214|34|LS483314|CRISPRCasFinder matches to position: 1245379-1245412, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.*************

6. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 847990-848024, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

7. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 848046-848080, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

8. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 1245458-1245492, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

9. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 2295430-2295464, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcatacaataatgtgcaagttggcg	Protospacer
**.********************************

10. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 2459942-2459976, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

11. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 2732214-2732248, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcctacaataatgtgcaagttggcg	Protospacer
************ **********************

12. spacer 5.1|847631|34|LS483314|CRISPRCasFinder matches to position: 1464733-1464766, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

13. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 751596-751621, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** *****

14. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 847966-847991, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

15. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 848022-848047, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

16. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 848078-848103, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

17. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 2732246-2732271, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ************

18. spacer 8.1|2617685|34|LS483314|CRISPRCasFinder matches to position: 1245379-1245412, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.*************

19. spacer 1.1|142214|34|LS483314|CRISPRCasFinder matches to position: 1377233-1377266, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atggagcccaacaaagagaaattggattcccaat	Protospacer
****. ****************************

20. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 751619-751653, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagctaacaataatgtgcaagttggcg	Protospacer
************  *********************

21. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 1155900-1155934, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcatacaaaaatgtgcaagttggcg	Protospacer
**.*************** ****************

22. spacer 2.1|265492|35|LS483314|CRISPRCasFinder matches to position: 1159868-1159902, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcttacaataatgtgcaagttggcg	Protospacer
**.********* **********************

23. spacer 5.1|847631|34|LS483314|CRISPRCasFinder matches to position: 1245379-1245412, mismatch: 2, identity: 0.941

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaacttctctttgttggggcccat	Protospacer
****.********.********************

24. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 751540-751565, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*************.****** *****

25. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 751652-751677, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacataaaagcaggcgg	Protospacer
***************.**** *****

26. spacer 6.1|1159901|26|LS483314|CRISPRCasFinder matches to position: 2459974-2459999, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagtagctggcgg	Protospacer
*************.** *********

27. spacer 8.1|2617685|34|LS483314|CRISPRCasFinder matches to position: 1377233-1377266, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atggagcccaacaaagagaaattggattcccaat	Protospacer
****. ****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483314_7	7.1\|1768075\|27\|LS483314\|CRISPRCasFinder	1768075-1768101	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815

1. spacer 7.1|1768075|27|LS483314|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

720233 : 728053

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE76018.1\|720233_721289_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
SQE76019.1\|721288_721975_-	Response regulator SaeR	NA	NA	NA	NA
SQE76020.1\|721949_722423_-	DoxX family protein	NA	NA	NA	NA
SQE76021.1\|722764_723205_-	lipoprotein	NA	NA	NA	NA
SQE76022.1\|723484_724069_-	Uncharacterised protein	NA	NA	NA	NA
SQE76023.1\|724167_724881_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
SQE76024.1\|724884_725304_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
SQE76025.1\|725305_725974_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
SQE76026.1\|726324_726918_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
SQE76027.1\|726901_728053_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	3.5e-23	36.1

DBSCAN-SWA_2

740024 : 754754

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE76036.1\|740024_741083_+	histidinol-phosphate aminotransferase	A0A0H3TLT9	Faustovirus	3.9e-21	27.7
SQE76037.1\|740956_741238_-	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA
SQE76038.1\|741377_741920_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
SQE76039.1\|742599_743517_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
SQE76040.1\|743785_745291_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
SQE76041.1\|745631_746132_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
SQE76042.1\|746151_747018_-	Integral membrane domain protein	NA	NA	NA	NA
SQE76043.1\|747818_748217_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
SQE76044.1\|748179_750285_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
SQE76045.1\|750402_751374_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
SQE76046.1\|752039_753053_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
SQE76047.1\|753039_753996_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
SQE76048.1\|753992_754754_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_3

805303 : 821807

Staphylococcus_phage(64.71%)

integrase,terminase,transposase

attL 802187:802202|attR 824011:824026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
802187:802202	attL	NA	NA	NA	NA
SQE76093.1\|805303_807676_+	3'-to-5' exoribonuclease RNase R	Q0GXV6	Lactococcus_phage	5.1e-93	39.0
SQE76094.1\|807697_808162_+	tmRNA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
SQE76095.1\|808724_809843_-\|integrase	integrase	H0UST3	Bacillus_phage	2.0e-76	44.6
SQE76096.1\|809823_810753_-	Xre family transcriptional regulator	Q9AZH9	Lactococcus_phage	2.2e-12	35.6
SQE76097.1\|810940_811159_+	putative plasmid copy control protein	NA	NA	NA	NA
SQE76098.1\|811171_811309_+	Uncharacterised protein	NA	NA	NA	NA
SQE76099.1\|811310_811721_+	pathogenicity island protein	A0A2H4JBF1	uncultured_Caudovirales_phage	2.4e-59	85.8
SQE76100.1\|811721_812015_+	hypothetical mobile element-associated protein	A0A1W6JQH0	Staphylococcus_phage	8.9e-24	61.8
SQE76101.1\|812102_812972_+	pathogenicity island protein	A0A1W6JQL5	Staphylococcus_phage	2.7e-161	96.2
SQE76102.1\|812988_814446_+	pathogenicity island protein	A0A1W6JQD6	Staphylococcus_phage	1.0e-277	96.3
SQE76103.1\|814746_815109_+	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	8.9e-66	99.2
SQE76104.1\|815110_815395_+	pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.0e-45	92.6
SQE76105.1\|815391_816033_+	mobile element-associated protein, putative	Q4ZE67	Staphylococcus_phage	5.9e-113	94.4
SQE76106.1\|816549_816891_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
SQE76107.1\|816902_817481_+\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	1.4e-28	38.4
SQE76108.1\|817498_817717_+	hypothetical mobile element-associated protein	NA	NA	NA	NA
SQE76109.1\|817767_818295_+	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	4.3e-85	94.9
SQE76110.1\|818297_818639_+\|transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	1.9e-57	98.2
SQE76111.1\|818635_819205_+\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	8.7e-100	96.8
SQE76112.1\|819633_820152_+	pathogenicity island protein	NA	NA	NA	NA
SQE76113.1\|820148_820577_+	pathogenicity island protein	NA	NA	NA	NA
SQE76114.1\|820563_821343_+	pathogenicity island protein	NA	NA	NA	NA
SQE76115.1\|821522_821807_+	phage protein	A0A2H4JAH5	uncultured_Caudovirales_phage	4.3e-23	57.6
824011:824026	attR	NA	NA	NA	NA

DBSCAN-SWA_4

856076 : 902372

Staphylococcus_phage(55.22%)

terminase,head,portal,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE76154.1\|856076_857318_+	Selenocysteine lyase	Q2XUY6	environmental_halophage	8.2e-111	44.8
SQE76155.1\|857307_857772_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA
SQE76156.1\|857922_859320_+	Scaffold protein sufB	NA	NA	NA	NA
SQE76157.1\|859387_860437_-	Integrase	A1KWY3	Staphylococcus_virus	1.3e-202	99.7
SQE76158.1\|860549_860729_+	Excisionase	Q4ZBP0	Staphylococcus_phage	3.7e-25	100.0
SQE76159.1\|860708_861641_-	phage protein	A0EX19	Staphylococcus_virus	2.5e-173	99.7
SQE76160.1\|861676_862288_-	Phage repressor	B5WZL2	Staphylococcus_phage	5.5e-100	89.2
SQE76161.1\|862458_862686_+	ORF060	B5WZL3	Staphylococcus_phage	2.6e-31	93.3
SQE76162.1\|862746_862908_+	Uncharacterised protein	Q4ZB04	Staphylococcus_virus	4.3e-20	100.0
SQE76163.1\|862900_863137_-	Uncharacterised protein	Q4ZBN3	Staphylococcus_phage	7.4e-37	96.2
SQE76164.1\|863201_863939_+	prophage, antirepressor, putative	M9NS32	Staphylococcus_phage	4.7e-130	98.3
SQE76165.1\|863951_864113_+	phi PV83 orf 10-like protein	A0A2H4J3T9	uncultured_Caudovirales_phage	6.6e-13	73.6
SQE76166.1\|864043_864247_-	Uncharacterised protein	A0A2H4JBA9	uncultured_Caudovirales_phage	1.7e-18	69.8
SQE76167.1\|864316_864508_+	phage protein	A0A0F6N3I2	Staphylococcus_phage	5.1e-20	98.1
SQE76168.1\|864529_864691_+	phage protein	C7F7L3	Staphylococcus_phage	7.2e-20	98.1
SQE76169.1\|864680_864830_+	Uncharacterised protein	A0A0H3U318	Staphylococcus_phage	3.8e-07	88.2
SQE76170.1\|864783_865044_+	phage protein	Q4ZBM7	Staphylococcus_phage	4.4e-43	97.7
SQE76171.1\|865058_865538_+	phage protein	A0A0H4J328	Staphylococcus_phage	1.1e-82	100.0
SQE76172.1\|865537_866176_+	putative phage single-strand DNA binding protein	A0A059T7J7	Staphylococcus_phage	1.1e-114	98.6
SQE76173.1\|866175_866601_+	Single-stranded DNA-binding protein, phage associated	A0A0E3XC62	Staphylococcus_phage	3.0e-65	90.8
SQE76174.1\|866611_867163_+	ORF027	A0A2H4PQR4	Staphylococcus_phage	1.6e-106	100.0
SQE76175.1\|867163_867838_+	phage protein	C8CGZ0	Staphylococcus_phage	2.6e-127	98.7
SQE76176.1\|867830_868586_+	hypothetical phage-related protein	C8CGZ1	Staphylococcus_phage	1.1e-142	99.6
SQE76177.1\|868585_868942_+	phage protein	B7T0A8	Staphylococcus_virus	2.2e-61	97.5
SQE76178.1\|868938_870180_+	prophage L54a, replicative DNA helicase	C8CGZ3	Staphylococcus_phage	3.3e-229	99.8
SQE76179.1\|870176_870392_+	hypothetical phage-related protein	A9CR72	Staphylococcus_phage	2.8e-35	100.0
SQE76180.1\|870394_870616_+	putative phi ETA-like protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
SQE76181.1\|870626_871031_+	putative phi ETA-like protein	G4KNP2	Staphylococcus_phage	1.6e-68	100.0
SQE76182.1\|871035_871221_+	PV83 orf 23-like protein	A0A0N9BBI1	Staphylococcus_phage	5.4e-27	98.4
SQE76183.1\|871221_871590_+	Phage protein	A0A2H4PQJ6	Staphylococcus_phage	3.1e-50	100.0
SQE76184.1\|871593_871836_+	phage family protein	Q4ZDP7	Staphylococcus_virus	5.6e-40	96.2
SQE76185.1\|871850_872099_+	Phage protein	Q4ZDW9	Staphylococcus_virus	1.7e-36	97.6
SQE76186.1\|872091_872631_+	dUTPase family protein	B2ZYX2	Staphylococcus_phage	3.7e-60	70.6
SQE76187.1\|872667_872874_+	phage protein	A0A2I6PEM9	Staphylococcus_phage	1.6e-16	95.6
SQE76188.1\|872870_873257_+	phage membrane protein	Q4ZDW6	Staphylococcus_virus	4.0e-64	100.0
SQE76189.1\|873253_873427_+	int gene activator RinB	Q4ZAX6	Staphylococcus_virus	3.5e-20	93.0
SQE76190.1\|873427_873829_+	putative phi PVL-like protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
SQE76191.1\|874183_874678_+\|terminase	phage terminase small subunit	R4IH30	Staphylococcus_phage	1.1e-74	100.0
SQE76192.1\|874670_875879_+\|terminase	phage terminase large subunit	R4IG95	Staphylococcus_phage	6.1e-236	100.0
SQE76193.1\|875892_877311_+\|portal	SPP1 family phage portal protein	Q4ZB45	Staphylococcus_virus	1.4e-271	98.7
SQE76194.1\|877267_878230_+\|head	phage minor head protein	Q4ZB44	Staphylococcus_virus	4.6e-178	99.7
SQE76195.1\|878327_878852_+	phage minor structural GP20	Q4ZB42	Staphylococcus_virus	2.9e-65	100.0
SQE76196.1\|878863_879823_+	Uncharacterised protein	Q4ZB40	Staphylococcus_virus	1.9e-179	100.0
SQE76197.1\|879839_880166_+	Rho termination factor domain-containing protein	Q4ZB39	Staphylococcus_virus	5.9e-53	100.0
SQE76198.1\|880165_880480_+	putative phage DNA-packaging protein	Q4ZB38	Staphylococcus_virus	2.6e-53	100.0
SQE76199.1\|880472_880808_+\|head,tail	putative phage head-tail adaptor protein	Q4ZB37	Staphylococcus_virus	3.9e-60	100.0
SQE76200.1\|880794_881208_+	HK97 family phage protein	Q4ZB36	Staphylococcus_virus	1.5e-77	100.0
SQE76201.1\|881220_881658_+	phage protein	A0A0E3T9M9	Staphylococcus_phage	2.1e-77	100.0
SQE76202.1\|881644_882205_+	phage protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
SQE76203.1\|882266_882761_+	phage protein	Q4ZB32	Staphylococcus_virus	2.5e-87	100.0
SQE76204.1\|882781_883123_+	phage protein	W5R8J4	Staphylococcus_phage	4.6e-56	99.1
SQE76205.1\|883125_886269_+	phage tape measure protein	A7YGV9	Staphylococcus_virus	1.7e-306	97.1
SQE76206.1\|886283_887219_+\|tail	phage tail protein	A7YGW1	Staphylococcus_virus	3.7e-180	100.0
SQE76207.1\|887229_889116_+	GDSL-like Lipase/Acylhydrolase family protein	Q4ZAG4	Staphylococcus_virus	0.0e+00	99.8
SQE76208.1\|889128_891027_+	phage protein	Q4ZBX7	Staphylococcus_virus	0.0e+00	98.4
SQE76209.1\|891026_892850_+	phiETA ORF57-like protein	A7YGW7	Staphylococcus_virus	0.0e+00	99.8
SQE76210.1\|892849_893227_+	SLT orf 129-like protein	Q4ZAU9	Staphylococcus_virus	9.0e-61	100.0
SQE76211.1\|893227_893410_+	phage protein	Q4ZB22	Staphylococcus_virus	2.5e-29	100.0
SQE76212.1\|893450_893750_+	hypothetical phage-related protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
SQE76213.1\|893886_895761_+	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Q4ZBX1	Staphylococcus_virus	0.0e+00	100.0
SQE76214.1\|895773_896946_+\|tail	phage tail fiber protein	I1W629	Staphylococcus_phage	2.7e-196	98.7
SQE76215.1\|896951_897347_+	phi ETA orf 63-like protein	A0EWU9	Staphylococcus_virus	1.8e-67	98.5
SQE76216.1\|897403_897658_+\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
SQE76217.1\|897669_898425_+	Autolysin	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
SQE76218.1\|898615_899107_+	Staphylokinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
SQE76219.1\|899519_899648_+	Uncharacterised protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
SQE76220.1\|899718_899829_+	Uncharacterised protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
SQE76221.1\|899830_900016_+	Uncharacterised protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
SQE76222.1\|900362_901412_+	Uncharacterised protein	NA	NA	NA	NA
SQE76223.1\|901368_901692_+	Uncharacterised protein	NA	NA	NA	NA
SQE76224.1\|901688_902372_+	Uncharacterised protein	A0A0A7S0U2	Clostridium_phage	1.1e-13	28.3

DBSCAN-SWA_5

1059075 : 1067548

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE76366.1\|1059075_1059558_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
SQE76367.1\|1059544_1060669_+	Phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
SQE76368.1\|1060672_1061377_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
SQE76369.1\|1061376_1061640_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
SQE76370.1\|1061641_1062313_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
SQE76371.1\|1062305_1064495_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.5e-141	39.8
SQE76372.1\|1064473_1065958_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
SQE76373.1\|1065950_1066979_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
SQE76374.1\|1066981_1067548_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.3e-28	39.6

DBSCAN-SWA_6

1325070 : 1342127

Staphylococcus_phage(54.17%)

integrase,terminase,portal,head

attL 1318794:1318811|attR 1344118:1344135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1318794:1318811	attL	NA	NA	NA	NA
SQE76607.1\|1325070_1326198_-\|integrase	integrase family protein	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
SQE76608.1\|1326250_1326946_-	host cell surface-exposed lipofamily protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
SQE76609.1\|1326957_1327341_-	Uncharacterised protein	NA	NA	NA	NA
SQE76610.1\|1327487_1327880_-	helix-turn-helix family protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
SQE76611.1\|1328047_1328266_+	regulatory protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
SQE76612.1\|1328292_1328568_+	Uncharacterised protein	NA	NA	NA	NA
SQE76613.1\|1328572_1328707_+	Uncharacterised protein	NA	NA	NA	NA
SQE76614.1\|1328737_1328857_+	Uncharacterised protein	NA	NA	NA	NA
SQE76615.1\|1328832_1329003_+	Uncharacterised protein	Q4ZDZ8	Staphylococcus_virus	2.4e-21	89.3
SQE76616.1\|1328991_1329198_-	Uncharacterised protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
SQE76617.1\|1329258_1329942_+	prophage, antirepressor, putative	A9CR56	Staphylococcus_phage	5.2e-107	85.6
SQE76618.1\|1330040_1330202_+	phage protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
SQE76619.1\|1330288_1330606_+	phage protein	W5RAK4	Staphylococcus_phage	1.6e-26	68.1
SQE76620.1\|1330595_1330862_+	phage protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
SQE76621.1\|1330866_1331403_+	glycosyl hydrolases 17 family protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
SQE76622.1\|1331403_1332183_+	bacterial dnaA family protein	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
SQE76623.1\|1332209_1332758_+	Single stranded DNA-binding protein,phage-associated	A7TWM8	Staphylococcus_phage	1.1e-91	92.9
SQE76624.1\|1332770_1333673_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
SQE76625.1\|1333673_1333964_+	PVL orf 51-like protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
SQE76626.1\|1333978_1334143_+	phage protein	A0A0E3T9L7	Staphylococcus_phage	1.1e-18	88.9
SQE76627.1\|1334142_1334454_+	Uncharacterised protein	NA	NA	NA	NA
SQE76628.1\|1334446_1334977_+	mazG nucleotide pyrophosphohydrolase domain protein	A0A1P8VVP1	Streptococcus_phage	5.2e-22	38.2
SQE76629.1\|1335222_1335687_+	Uncharacterised protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
SQE76630.1\|1335687_1335921_+	Uncharacterised protein	NA	NA	NA	NA
SQE76631.1\|1335963_1336452_+	sigma-70, region 4 family protein	R9TMH4	Paenibacillus_phage	9.7e-07	27.7
SQE76632.1\|1336604_1337033_+	homeo-like domain protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
SQE76633.1\|1337019_1338294_+\|terminase	phage terminase, large subunit, PBSX family	Q4ZE37	Staphylococcus_virus	1.9e-195	76.4
SQE76634.1\|1338306_1339755_+\|portal	phage portal protein, SPP1 family	Q4ZE36	Staphylococcus_virus	7.4e-196	69.4
SQE76635.1\|1339744_1341274_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZE35	Staphylococcus_virus	1.9e-109	61.6
SQE76636.1\|1341286_1341409_+	Uncharacterised protein	NA	NA	NA	NA
SQE76637.1\|1341665_1342127_+	Uncharacterised protein	A0A1J0MF61	Staphylococcus_phage	3.8e-29	46.0
1344118:1344135	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1619228 : 1627558

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE76873.1\|1619228_1620014_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
SQE76874.1\|1620139_1621030_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
SQE76875.1\|1621039_1622386_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
SQE76876.1\|1622499_1623600_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
SQE76877.1\|1623602_1624280_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
SQE76878.1\|1624410_1625517_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
SQE76879.1\|1625740_1627558_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3

DBSCAN-SWA_8

1695392 : 1704435

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE77049.1\|1695392_1695911_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
SQE77050.1\|1695932_1698206_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	5.2e-63	28.8
SQE77052.1\|1698408_1700688_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
SQE77053.1\|1700962_1701223_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
SQE77055.1\|1701241_1702381_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
SQE77057.1\|1702403_1703429_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQE77058.1\|1703430_1704435_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_9

1829897 : 1902874

Staphylococcus_phage(91.67%)

integrase,protease,tRNA

attL 1898413:1898430|attR 1907161:1907178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE77193.1\|1829897_1836458_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	2.3e-308	98.9
SQE77194.1\|1836783_1837095_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
SQE77196.1\|1837116_1839534_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
SQE77198.1\|1839821_1841003_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
SQE77199.1\|1841112_1842066_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
SQE77201.1\|1842062_1842521_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	2.3e-63	99.2
SQE77202.1\|1842458_1843286_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
SQE77203.1\|1843519_1844521_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
SQE77204.1\|1844642_1845107_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
SQE77205.1\|1845119_1846301_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
SQE77206.1\|1846311_1846944_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
SQE77207.1\|1846950_1847994_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
SQE77208.1\|1848474_1849977_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
SQE77210.1\|1850499_1850814_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
SQE77212.1\|1850813_1852106_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	9.4e-227	99.3
SQE77213.1\|1852192_1853047_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
SQE77214.1\|1853322_1853547_-	putative staphylococcal protein	NA	NA	NA	NA
SQE77215.1\|1853745_1854216_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
SQE77216.1\|1854328_1854772_+	comK family protein	NA	NA	NA	NA
SQE77217.1\|1854758_1855202_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
SQE77218.1\|1855497_1856133_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
SQE77220.1\|1856572_1857286_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
SQE77221.1\|1857545_1857848_+	membrane protein	NA	NA	NA	NA
SQE77222.1\|1858103_1858469_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
SQE77223.1\|1858465_1858819_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
SQE77225.1\|1859201_1860035_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
SQE77226.1\|1860246_1861155_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
SQE77227.1\|1861279_1862473_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
SQE77228.1\|1862844_1864437_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
SQE77230.1\|1864814_1865585_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	1.1e-142	98.8
SQE77231.1\|1865565_1866045_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
SQE77232.1\|1866104_1866362_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
SQE77233.1\|1866358_1867360_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-186	97.9
SQE77234.1\|1867364_1868843_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.1e-283	97.4
SQE77235.1\|1869001_1869484_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	4.6e-78	97.9
SQE77236.1\|1869795_1870410_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	9.5e-36	87.3
SQE77237.1\|1870490_1871486_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	6.2e-77	98.8
SQE77238.1\|1871561_1872188_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	5.3e-90	93.8
SQE77239.1\|1872228_1872570_+	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
SQE77240.1\|1872670_1873243_+	Uncharacterised protein	A0A2H4PQN4	Staphylococcus_phage	1.1e-25	96.6
SQE77242.1\|1873439_1873997_-	Domain of uncharacterised function (DUF955)	A0A2H4PQN8	Staphylococcus_phage	2.7e-77	96.2
SQE77243.1\|1874369_1874546_-	Uncharacterised protein	NA	NA	NA	NA
SQE77244.1\|1875655_1875910_-	exported protein	NA	NA	NA	NA
SQE77245.1\|1875978_1876098_-	putative protein with DUF1433	NA	NA	NA	NA
SQE77247.1\|1876097_1876541_-	exported protein	NA	NA	NA	NA
SQE77248.1\|1876540_1876984_-	putative protein with DUF1433	NA	NA	NA	NA
SQE77249.1\|1877408_1879946_+	hyaluronate lyase	NA	NA	NA	NA
SQE77250.1\|1880069_1880447_-	exported protein	NA	NA	NA	NA
SQE77251.1\|1880652_1881093_-	putative protein with DUF1433	NA	NA	NA	NA
SQE77252.1\|1881137_1882751_+	pathogenicity island protein	NA	NA	NA	NA
SQE77253.1\|1882765_1883065_+	ESAT-6 family protein	NA	NA	NA	NA
SQE77255.1\|1883191_1884400_-	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	9.3e-35	31.5
SQE77256.1\|1884392_1885949_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	2.6e-287	98.3
SQE77257.1\|1886311_1887031_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	1.7e-129	97.9
SQE77258.1\|1887151_1887871_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
SQE77259.1\|1887928_1888651_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
SQE77260.1\|1888775_1889483_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.7e-130	99.6
SQE77261.1\|1890446_1891016_+	beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	2.6e-51	62.6
SQE77262.1\|1891489_1891762_-	truncated BsaG protein	A0A2H4PQH0	Staphylococcus_phage	2.9e-29	78.8
SQE77264.1\|1891963_1892437_+	Uncharacterised protein	NA	NA	NA	NA
SQE77265.1\|1892441_1893233_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
SQE77266.1\|1893602_1894586_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
SQE77267.1\|1894587_1895523_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
SQE77268.1\|1897130_1897727_+	Uncharacterised protein	NA	NA	NA	NA
SQE77269.1\|1897893_1899240_+	exported protein	M1NRY5	Streptococcus_phage	9.6e-65	50.8
1898413:1898430	attL	NA	NA	NA	NA
SQE77270.1\|1899826_1900063_+	Uncharacterised protein	NA	NA	NA	NA
SQE77271.1\|1900083_1900860_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
SQE77272.1\|1901257_1901752_+	Uncharacterised protein	NA	NA	NA	NA
SQE77273.1\|1902133_1902874_+\|integrase	putative integrase	A0A2H4JB53	uncultured_Caudovirales_phage	3.0e-124	89.0
1907161:1907178	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1983127 : 2053273

Staphylococcus_phage(67.74%)

transposase,protease,integrase,terminase,tRNA

attL 1982519:1982543|attR 2056477:2056501

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1982519:1982543	attL	NA	NA	NA	NA
SQE77423.1\|1983127_1984555_-\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	NA	NA	NA	NA
SQE77425.1\|1984567_1986025_-\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
SQE77426.1\|1986026_1986329_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
SQE77428.1\|1986695_1988234_+	Sodium/proline symporter	NA	NA	NA	NA
SQE77429.1\|1988322_1989522_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA
SQE77431.1\|1989534_1991538_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
SQE77434.1\|1991541_1993734_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
SQE77435.1\|1993730_1994423_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA
SQE77436.1\|1994594_1994897_-	His repressor	NA	NA	NA	NA
SQE77437.1\|1995005_1996301_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
SQE77438.1\|1997160_1998327_+	Staphopain A precursor	NA	NA	NA	NA
SQE77440.1\|1998357_1998684_+\|protease	putative cysteine protease inhibitor (Staphostatin A)	NA	NA	NA	NA
SQE77442.1\|1998975_1999149_-	Uncharacterised protein	NA	NA	NA	NA
SQE77444.1\|1999129_1999732_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
SQE77446.1\|2000002_2000824_-	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
SQE77447.1\|2000816_2002286_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
SQE77449.1\|2002469_2003546_+	nitric-oxide synthase	NA	NA	NA	NA
SQE77451.1\|2003565_2004360_+	ACT domain protein	NA	NA	NA	NA
SQE77452.1\|2004549_2006112_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA
SQE77453.1\|2006316_2007414_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	2.5e-47	34.9
SQE77455.1\|2007785_2008346_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
SQE77457.1\|2008398_2009328_+	inorganic pyrophosphatase	NA	NA	NA	NA
SQE77460.1\|2009747_2011127_+	Aldehyde dehydrogenase	NA	NA	NA	NA
SQE77461.1\|2011246_2012275_-	6-phosphogluconolactonase	NA	NA	NA	NA
SQE77462.1\|2012544_2012946_+	yolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
SQE77464.1\|2013518_2013692_-	exported protein	NA	NA	NA	NA
SQE77465.1\|2014070_2015183_+	choloylglycine hydrolase	NA	NA	NA	NA
SQE77466.1\|2015239_2016082_-	exported protein	NA	NA	NA	NA
SQE77467.1\|2016078_2016636_-	Predicted membrane protein	NA	NA	NA	NA
SQE77468.1\|2016695_2017220_-	membrane protein	NA	NA	NA	NA
SQE77469.1\|2017340_2017904_+	Thioredoxin	NA	NA	NA	NA
SQE77470.1\|2017969_2018710_-	ABC-2 transporter family protein	NA	NA	NA	NA
SQE77472.1\|2018709_2019582_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
SQE77473.1\|2019578_2020259_-	membrane protein	NA	NA	NA	NA
SQE77474.1\|2020259_2021156_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
SQE77475.1\|2021152_2021533_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQE77476.1\|2021791_2021968_-	membrane protein	NA	NA	NA	NA
SQE77478.1\|2022508_2023795_+	Aspartate aminotransferase	NA	NA	NA	NA
SQE77479.1\|2024073_2024364_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA
SQE77480.1\|2024374_2026438_-	MHC class II analog (pseudogene)	NA	NA	NA	NA
SQE77481.1\|2026823_2027819_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	2.4e-161	99.6
SQE77482.1\|2028056_2029073_-	gamma-hemolysin component B	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
SQE77484.1\|2029094_2030147_-	Leukocidin S subunit	A0A1X9IGW5	Staphylococcus_phage	2.5e-36	34.6
SQE77485.1\|2030581_2031805_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
SQE77486.1\|2032176_2033022_-	tetracenomycin polyketide synthesis O-methyltransferase TcmP	NA	NA	NA	NA
SQE77487.1\|2033083_2033995_-	ferric hydroxamate receptor 1	NA	NA	NA	NA
SQE77488.1\|2034155_2035463_+	Na+-transporting ATP synthase	NA	NA	NA	NA
SQE77490.1\|2036034_2036661_-	Phage protein	C8CH40	Staphylococcus_phage	7.0e-42	44.5
SQE77491.1\|2036657_2036837_-	mobile element-associated protein	NA	NA	NA	NA
SQE77492.1\|2037845_2038538_-\|protease	subtilase family protease, putative	NA	NA	NA	NA
SQE77493.1\|2038524_2039130_-	Uncharacterised protein	NA	NA	NA	NA
SQE77494.1\|2039143_2039893_-	exported protein	NA	NA	NA	NA
SQE77495.1\|2041039_2041402_+	pathogenicity island protein	NA	NA	NA	NA
SQE77496.1\|2041486_2042056_-\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	6.6e-100	97.4
SQE77498.1\|2042052_2042394_-\|transposase	transposase	Q4ZE86	Staphylococcus_phage	8.7e-55	91.2
SQE77499.1\|2042396_2042924_-	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	3.7e-89	97.1
SQE77500.1\|2042974_2043193_-	hypothetical mobile element-associated protein	NA	NA	NA	NA
SQE77501.1\|2043210_2043789_-\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	1.6e-29	39.5
SQE77502.1\|2043800_2044142_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	2.1e-56	96.5
SQE77503.1\|2044488_2045130_-\|transposase	transposase	Q4ZE67	Staphylococcus_phage	7.2e-111	93.0
SQE77504.1\|2045131_2045404_-	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	3.2e-44	100.0
SQE77505.1\|2045390_2046194_-	pathogenicity island replication protein	Q4ZE69	Staphylococcus_phage	6.2e-152	97.0
SQE77507.1\|2046369_2047986_-	bacteriophage resistance protein	A0A1W6JPF4	Staphylococcus_phage	6.9e-243	76.8
SQE77508.1\|2048060_2048360_-	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	6.1e-20	58.2
SQE77509.1\|2048362_2048572_-	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
SQE77510.1\|2048564_2048711_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
SQE77511.1\|2048707_2049025_-	mobile element-associated transcriptional regulator, putative	A0A1W6JQE0	Staphylococcus_phage	8.6e-49	94.3
SQE77512.1\|2049028_2049241_-	pathogenicity island protein	A0A1W6JQE8	Staphylococcus_phage	3.8e-24	84.1
SQE77513.1\|2049414_2050047_+	mobile element-associated transcriptional regulator, putative	A0A1W6JQE6	Staphylococcus_phage	2.2e-96	82.9
SQE77515.1\|2050055_2051228_+\|integrase	mobile element-associated integrase, putative	A0A1W6JQD3	Staphylococcus_phage	5.9e-220	98.2
SQE77516.1\|2051296_2052913_-	heat shock protein 60 family chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
SQE77517.1\|2052988_2053273_-	Heat shock protein 60 family co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
2056477:2056501	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483314

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection