CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483317	Staphylococcus aureus strain NCTC5663 genome assembly, chromosome: 1	4 crisprs	cas3,DEDDh,DinG,csa3,WYL	1	0	9	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LS483317_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483317_1

1109278-1109368

Orphan

Consensus_repeat	Method
GAGCGCAAGCATAAAATTCCCTAACAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483317_1

>merge|LS483317|1|1109278-1109368|CRISPRCasFinder
GAGCGCAAGCATAAAATTCCCTAACAACAAAAAGTTGTAAGGAAGAAGAGGGATACTTGCTCTGAGCGCAAGCATAAAATCCCCTAACAAC

>LS483317|1|1|1109278-1109368|CRISPRCasFinder
GAGCGCAAGCATAAAATTCCCTAACAAC	AAAAAGTTGTAAGGAAGAAGAGGGATACTTGCTCT
GAGCGCAAGCATAAAATCCCCTAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483317.1\|SQE83331.1\|1113319_1113586_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
LS483317.1\|SQE83333.1\|1115543_1115777_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|239274
LS483317.1\|SQE83330.1\|1112623_1113166_+\|Radical-activating-enzyme-protein	unknown	unknown	gnl\|CDD\|368297
LS483317.1\|SQE83326.1\|1108232_1108808_-\|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	unknown	unknown	gnl\|CDD\|227065
LS483317.1\|SQE83322.1\|1103004_1104483_+\|IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
LS483317.1\|SQE83334.1\|1115974_1117336_+\|Cytochrome-d-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
LS483317.1\|SQE83317.1\|1097083_1097755_+\|Phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235140
LS483317.1\|SQE83325.1\|1106817_1108218_-\|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	unknown	unknown	gnl\|CDD\|213192
LS483317.1\|SQE83329.1\|1111397_1112570_+\|LSU-m5C1962-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|224017
LS483317.1\|SQE83320.1\|1101392_1102421_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LS483317.1\|SQE83336.1\|1118484_1119147_+\|Trk-system-potassium-uptake-protein-trkA	unknown	unknown	gnl\|CDD\|223643
LS483317.1\|SQE83319.1\|1099915_1101400_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
LS483317.1\|SQE83318.1\|1097747_1099937_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	unknown	unknown	gnl\|CDD\|234921
LS483317.1\|SQE83335.1\|1117332_1118352_+\|Cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
LS483317.1\|SQE83324.1\|1106018_1106825_-\|hydroxymethylpyrimidine-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|223692
LS483317.1\|SQE83321.1\|1102423_1102990_+\|Phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
LS483317.1\|SQE83323.1\|1104504_1105752_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
LS483317.1\|SQE83327.1\|1109391_1109526_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483317.1\|SQE83328.1\|1109677_1110973_+\|membrane-spanning-protein	unknown	unknown	unknown
LS483317.1\|SQE83332.1\|1113588_1115307_+\|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system	unknown	unknown	gnl\|CDD\|224006

Protein	Function_ID	Function_description	E-value
LS483317.1\|SQE83333.1\|1115543_1115777_-\|glutaredoxin	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	1.37001e-16
LS483317.1\|SQE83330.1\|1112623_1113166_+\|Radical-activating-enzyme-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00760449
LS483317.1\|SQE83326.1\|1108232_1108808_-\|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
LS483317.1\|SQE83322.1\|1103004_1104483_+\|IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
LS483317.1\|SQE83334.1\|1115974_1117336_+\|Cytochrome-d-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.48829e-165
LS483317.1\|SQE83317.1\|1097083_1097755_+\|Phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	3.52315e-141
LS483317.1\|SQE83325.1\|1106817_1108218_-\|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.91329e-64
LS483317.1\|SQE83329.1\|1111397_1112570_+\|LSU-m5C1962-methyltransferase-RlmI	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	3.91211e-146
LS483317.1\|SQE83320.1\|1101392_1102421_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LS483317.1\|SQE83336.1\|1118484_1119147_+\|Trk-system-potassium-uptake-protein-trkA	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.97096e-66
LS483317.1\|SQE83319.1\|1099915_1101400_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
LS483317.1\|SQE83318.1\|1097747_1099937_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
LS483317.1\|SQE83335.1\|1117332_1118352_+\|Cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	1.67944e-76
LS483317.1\|SQE83324.1\|1106018_1106825_-\|hydroxymethylpyrimidine-transport-system-permease-protein	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	3.56432e-29
LS483317.1\|SQE83321.1\|1102423_1102990_+\|Phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	1.72008e-91
LS483317.1\|SQE83323.1\|1104504_1105752_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
LS483317.1\|SQE83331.1\|1113319_1113586_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
LS483317.1\|SQE83332.1\|1113588_1115307_+\|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0

>LS483317.1|SQE83326.1|1108232_1108808_-|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>LS483317.1|SQE83325.1|1106817_1108218_-|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQVPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLENVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>LS483317.1|SQE83324.1|1106018_1106825_-|hydroxymethylpyrimidine-transport-system-permease-protein
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDAANYRGLQRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDVIFIIVLIAIITLAYYCSINLPITGIDDVRLGRVG
>LS483317.1|SQE83323.1|1104504_1105752_+|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNRSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQGILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVHDAQRAAYEKVSQIQSDHLFYRHDIANKALQLK
>LS483317.1|SQE83322.1|1103004_1104483_+|IMP-cyclohydrolase
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKTQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPAAVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>LS483317.1|SQE83321.1|1102423_1102990_+|Phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>LS483317.1|SQE83320.1|1101392_1102421_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYMVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>LS483317.1|SQE83319.1|1099915_1101400_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSNQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>LS483317.1|SQE83318.1|1097747_1099937_+|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKNYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGVLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTSYTEISENVSDIKQIWEGAIAQCLTTQD
>LS483317.1|SQE83317.1|1097083_1097755_+|Phosphoribosylformylglycinamidine-synthase
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRDEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>LS483317.1|SQE83327.1|1109391_1109526_-|Uncharacterised-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>LS483317.1|SQE83328.1|1109677_1110973_+|membrane-spanning-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>LS483317.1|SQE83329.1|1111397_1112570_+|LSU-m5C1962-methyltransferase-RlmI
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQEINTAFFVKLFKTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSVIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>LS483317.1|SQE83330.1|1112623_1113166_+|Radical-activating-enzyme-protein
MGFKNNLTSNLTNKIGNSVFKIENINEKGAMPTTIKELNERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERVMSAAAIQGSQFIGKRISSAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>LS483317.1|SQE83331.1|1113319_1113586_+|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>LS483317.1|SQE83332.1|1113588_1115307_+|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMNGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>LS483317.1|SQE83333.1|1115543_1115777_-|glutaredoxin
MSEIIVYTQNDCPPCTFVKNYLNEHQIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKELNIQD
>LS483317.1|SQE83334.1|1115974_1117336_+|Cytochrome-d-ubiquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>LS483317.1|SQE83335.1|1117332_1118352_+|Cytochrome-d-ubiquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFAISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
>LS483317.1|SQE83336.1|1118484_1119147_+|Trk-system-potassium-uptake-protein-trkA
MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVYPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483317_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483317_2

1265912-1266005

Unclear

Consensus_repeat	Method
TAAGAAACAGTAATCAATAAATTGATAAGT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LS483317_2

>merge|LS483317|2|1265912-1266005|CRISPRCasFinder
TAAGAAACAGTAATCAATAAATTGATAAGTAGATTAGAGGAACACCTGAGCTAAAGCTCATGCATAAGAAACACTAATCAATAAATTGATAAGT

>LS483317|2|2|1265912-1266005|CRISPRCasFinder
TAAGAAACAGTAATCAATAAATTGATAAGT	AGATTAGAGGAACACCTGAGCTAAAGCTCATGCA
TAAGAAACACTAATCAATAAATTGATAAGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483317.1\|SQE83483.1\|1274654_1275158_+\|16S-rRNA-processing-protein	unknown	unknown	gnl\|CDD\|234650
LS483317.1\|SQE83480.1\|1272124_1272457_+\|Signal-recognition-particle-associated-protein	unknown	unknown	gnl\|CDD\|234647
LS483317.1\|SQE83482.1\|1274191_1274467_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
LS483317.1\|SQE83468.1\|1257396_1257585_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
LS483317.1\|SQE83481.1\|1272482_1273850_+\|Signal-recognition-particle,-subunit-FFH/SRP54	unknown	unknown	gnl\|CDD\|236780
LS483317.1\|SQE83478.1\|1267321_1270888_+\|putative-chromosome-partition-protein	unknown	unknown	gnl\|CDD\|224117
LS483317.1\|SQE83470.1\|1258416_1260063_+\|Dihydroxyacetone-kinase-family-protein	unknown	unknown	gnl\|CDD\|224378
LS483317.1\|SQE83473.1\|1263092_1264079_+\|Fatty-acid/phospholipid-synthesis-protein	unknown	unknown	gnl\|CDD\|235414
LS483317.1\|SQE83467.1\|1256373_1257015_+\|thiamin-pyrophosphokinase	unknown	unknown	gnl\|CDD\|224480
LS483317.1\|SQE83476.1\|1266094_1266328_+\|Acyl-carrier-protein-/-HmrB-protein-involved-in-methicillin-resistance	unknown	unknown	gnl\|CDD\|179197
LS483317.1\|SQE83474.1\|1264071_1264998_+\|Malonyl-CoA-[acyl-carrier-protein]-transacylase	unknown	unknown	gnl\|CDD\|223408
LS483317.1\|SQE83475.1\|1264990_1265725_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
LS483317.1\|SQE83471.1\|1260252_1262313_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
LS483317.1\|SQE83477.1\|1266443_1267175_+\|Ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
LS483317.1\|SQE83479.1\|1270887_1272138_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	unknown	unknown	gnl\|CDD\|236686
LS483317.1\|SQE83484.1\|1275157_1275895_+\|tRNA-(Guanine37-N1)--methyltransferase	unknown	unknown	gnl\|CDD\|234581
LS483317.1\|SQE83485.1\|1275997_1276348_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LS483317.1\|SQE83469.1\|1258027_1258402_+\|general-stress-protein,-Gls24-family	unknown	unknown	gnl\|CDD\|224221
LS483317.1\|SQE83472.1\|1262530_1263088_+\|fatty-acid-biosynthesis-transcriptional-regulator,-putative	unknown	unknown	gnl\|CDD\|179847
LS483317.1\|SQE83466.1\|1255722_1256367_+\|Ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114

Protein	Function_ID	Function_description	E-value
LS483317.1\|SQE83483.1\|1274654_1275158_+\|16S-rRNA-processing-protein	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.02289e-68
LS483317.1\|SQE83480.1\|1272124_1272457_+\|Signal-recognition-particle-associated-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.84113e-47
LS483317.1\|SQE83482.1\|1274191_1274467_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
LS483317.1\|SQE83468.1\|1257396_1257585_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
LS483317.1\|SQE83481.1\|1272482_1273850_+\|Signal-recognition-particle,-subunit-FFH/SRP54	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
LS483317.1\|SQE83478.1\|1267321_1270888_+\|putative-chromosome-partition-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
LS483317.1\|SQE83470.1\|1258416_1260063_+\|Dihydroxyacetone-kinase-family-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
LS483317.1\|SQE83473.1\|1263092_1264079_+\|Fatty-acid/phospholipid-synthesis-protein	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	6.04516e-178
LS483317.1\|SQE83467.1\|1256373_1257015_+\|thiamin-pyrophosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	3.57557e-81
LS483317.1\|SQE83476.1\|1266094_1266328_+\|Acyl-carrier-protein-/-HmrB-protein-involved-in-methicillin-resistance	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
LS483317.1\|SQE83474.1\|1264071_1264998_+\|Malonyl-CoA-[acyl-carrier-protein]-transacylase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.4255e-134
LS483317.1\|SQE83475.1\|1264990_1265725_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.68137e-140
LS483317.1\|SQE83471.1\|1260252_1262313_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
LS483317.1\|SQE83477.1\|1266443_1267175_+\|Ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	5.10947e-115
LS483317.1\|SQE83479.1\|1270887_1272138_+\|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
LS483317.1\|SQE83484.1\|1275157_1275895_+\|tRNA-(Guanine37-N1)--methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.2764e-163
LS483317.1\|SQE83485.1\|1275997_1276348_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
LS483317.1\|SQE83469.1\|1258027_1258402_+\|general-stress-protein,-Gls24-family	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
LS483317.1\|SQE83472.1\|1262530_1263088_+\|fatty-acid-biosynthesis-transcriptional-regulator,-putative	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	7.10291e-99
LS483317.1\|SQE83466.1\|1255722_1256367_+\|Ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	1.52718e-114

>LS483317.1|SQE83475.1|1264990_1265725_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>LS483317.1|SQE83474.1|1264071_1264998_+|Malonyl-CoA-[acyl-carrier-protein]-transacylase
MSKTAIIFPGQGAQKVGMAQDLYNNNDQATEILTSAANTLDFDILETMFTDEDGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIIRKRGQLMAQAFPTGVGSMAAVLGLDFDKVNEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>LS483317.1|SQE83473.1|1263092_1264079_+|Fatty-acid/phospholipid-synthesis-protein
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYKLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKLAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>LS483317.1|SQE83472.1|1262530_1263088_+|fatty-acid-biosynthesis-transcriptional-regulator,-putative
MKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVKAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
>LS483317.1|SQE83471.1|1260252_1262313_+|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRIKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELRGKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIALFGDFMNVALLTGSVKGKKRKILLEQLENGTIDCLVGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRRFVEENLLHRSFD
>LS483317.1|SQE83470.1|1258416_1260063_+|Dihydroxyacetone-kinase-family-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAVEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKLDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLAEDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>LS483317.1|SQE83469.1|1258027_1258402_+|general-stress-protein,-Gls24-family
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>LS483317.1|SQE83468.1|1257396_1257585_-|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>LS483317.1|SQE83467.1|1256373_1257015_+|thiamin-pyrophosphokinase
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFILMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>LS483317.1|SQE83466.1|1255722_1256367_+|Ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG
>LS483317.1|SQE83476.1|1266094_1266328_+|Acyl-carrier-protein-/-HmrB-protein-involved-in-methicillin-resistance
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>LS483317.1|SQE83477.1|1266443_1267175_+|Ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHRQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>LS483317.1|SQE83478.1|1267321_1270888_+|putative-chromosome-partition-protein
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVHDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLEERKKNQSETNARYEEEQENLIELLENISNEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEAKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRVVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESVTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAVFIQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>LS483317.1|SQE83479.1|1270887_1272138_+|Signal-recognition-particle-receptor-protein-FtsY-(=alpha-subunit)
MSFFKRLKDKFATNKENEEVKSLTEEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIEQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGAK
>LS483317.1|SQE83480.1|1272124_1272457_+|Signal-recognition-particle-associated-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKQHLSNPEQIQRYIQQLEDLE
>LS483317.1|SQE83481.1|1272482_1273850_+|Signal-recognition-particle,-subunit-FFH/SRP54
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDNQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>LS483317.1|SQE83482.1|1274191_1274467_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>LS483317.1|SQE83483.1|1274654_1275158_+|16S-rRNA-processing-protein
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>LS483317.1|SQE83484.1|1275157_1275895_+|tRNA-(Guanine37-N1)--methyltransferase
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSEADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>LS483317.1|SQE83485.1|1275997_1276348_+|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483317_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483317_3

2350009-2350090

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483317_3

>merge|LS483317|3|2350009-2350090|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGAACACCAATTTCTACAGACAATGCAAGTTGGGG

>LS483317|3|3|2350009-2350090|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGAACACCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483317.1\|SQE84433.1\|2341809_2342481_-\|Molybdenum-transport-system-permease-protein-modB	unknown	unknown	gnl\|CDD\|226629
LS483317.1\|SQE84438.1\|2346052_2346994_-\|Purine-nucleosidase	unknown	unknown	gnl\|CDD\|239113
LS483317.1\|SQE84448.1\|2355549_2356386_+\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|223899
LS483317.1\|SQE84439.1\|2347392_2348301_-\|Ferrichrome-binding-periplasmic-protein-precursor	unknown	unknown	gnl\|CDD\|238558
LS483317.1\|SQE84447.1\|2354935_2355550_+\|Urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
LS483317.1\|SQE84446.1\|2354233_2354923_+\|Urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
LS483317.1\|SQE84440.1\|2348513_2349668_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
LS483317.1\|SQE84436.1\|2344535_2345306_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|375893
LS483317.1\|SQE84449.1\|2356574_2356922_-\|staphylococcal-accessory-regulator	unknown	unknown	gnl\|CDD\|130944
LS483317.1\|SQE84443.1\|2351653_2352064_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|237302
LS483317.1\|SQE84432.1\|2341203_2341809_-\|Molybdenum-transport-ATP-binding-protein-modC	unknown	unknown	gnl\|CDD\|226628
LS483317.1\|SQE84435.1\|2343566_2344364_+\|Formate-dehydrogenase-chain-D	unknown	unknown	gnl\|CDD\|234823
LS483317.1\|SQE84431.1\|2340030_2341035_-\|Molybdopterin-biosynthesis-MoeB-protein	unknown	unknown	gnl\|CDD\|181084
LS483317.1\|SQE84444.1\|2352060_2353776_+\|Urease-alpha-subunit	unknown	unknown	gnl\|CDD\|237305
LS483317.1\|SQE84442.1\|2351337_2351640_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
LS483317.1\|SQE84441.1\|2350172_2351078_-\|Urea-transporter	unknown	unknown	gnl\|CDD\|226842
LS483317.1\|SQE84445.1\|2353788_2354241_+\|Urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
LS483317.1\|SQE84450.1\|2357349_2357676_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379617
LS483317.1\|SQE84434.1\|2342494_2343277_-\|Molybdate-binding-protein	unknown	unknown	gnl\|CDD\|270255
LS483317.1\|SQE84437.1\|2345377_2345932_-\|BioY-family-protein	unknown	unknown	gnl\|CDD\|224187

Protein	Function_ID	Function_description	E-value
LS483317.1\|SQE84433.1\|2341809_2342481_-\|Molybdenum-transport-system-permease-protein-modB	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	8.73868e-95
LS483317.1\|SQE84438.1\|2346052_2346994_-\|Purine-nucleosidase	gnl\|CDD\|239113	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides. .	1.56456e-105
LS483317.1\|SQE84448.1\|2355549_2356386_+\|urease-accessory-protein-UreD	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	4.4162e-104
LS483317.1\|SQE84439.1\|2347392_2348301_-\|Ferrichrome-binding-periplasmic-protein-precursor	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	7.08693e-53
LS483317.1\|SQE84447.1\|2354935_2355550_+\|Urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	2.18448e-119
LS483317.1\|SQE84446.1\|2354233_2354923_+\|Urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	3.21155e-100
LS483317.1\|SQE84440.1\|2348513_2349668_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	7.02624e-62
LS483317.1\|SQE84436.1\|2344535_2345306_-\|acetyltransferase	gnl\|CDD\|375893	pfam18467, DUF5613, Domain of unknown function (DUF5613). This is a domain of unknown function found in bacteria.	1.81442e-26
LS483317.1\|SQE84449.1\|2356574_2356922_-\|staphylococcal-accessory-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.1048e-22
LS483317.1\|SQE84443.1\|2351653_2352064_+\|urease-subunit-beta	gnl\|CDD\|237302	PRK13201, ureB, urease subunit beta; Reviewed.	9.29283e-85
LS483317.1\|SQE84432.1\|2341203_2341809_-\|Molybdenum-transport-ATP-binding-protein-modC	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.70227e-115
LS483317.1\|SQE84435.1\|2343566_2344364_+\|Formate-dehydrogenase-chain-D	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	1.91026e-123
LS483317.1\|SQE84431.1\|2340030_2341035_-\|Molybdopterin-biosynthesis-MoeB-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	1.97231e-131
LS483317.1\|SQE84444.1\|2352060_2353776_+\|Urease-alpha-subunit	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
LS483317.1\|SQE84442.1\|2351337_2351640_+\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	2.77571e-65
LS483317.1\|SQE84441.1\|2350172_2351078_-\|Urea-transporter	gnl\|CDD\|226842	COG4413, Utp, Urea transporter [Amino acid transport and metabolism].	9.73888e-133
LS483317.1\|SQE84445.1\|2353788_2354241_+\|Urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	4.02022e-59
LS483317.1\|SQE84450.1\|2357349_2357676_-\|Uncharacterised-protein	gnl\|CDD\|379617	pfam14470, bPH_3, Bacterial PH domain. Proteins in this family are distantly related to PH domains.	0.00124337
LS483317.1\|SQE84434.1\|2342494_2343277_-\|Molybdate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.34177e-78
LS483317.1\|SQE84437.1\|2345377_2345932_-\|BioY-family-protein	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	8.70712e-40

>LS483317.1|SQE84440.1|2348513_2349668_-|acyl-CoA-dehydrogenase
MNDMDNSFLITTEIQRKWIEKFKAIGDTFKAKSEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGVKTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWNVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGWILHIPSCYLGIAQAARNYAVDFAIQHSPNSIEGTIATLPTVQQNLGKMETLLLCARQFLWSTAKGYQQYKDDSQIRNSTSASKVMVMNQGLEVIDLAMRIVGAKSLEMNRPLQRYYRDMRAGLHNPPMEDAAYTNIAKSITDTF
>LS483317.1|SQE84439.1|2347392_2348301_-|Ferrichrome-binding-periplasmic-protein-precursor
MKKLLLPLIIMLLVLAACGNQGEKNNKAETKSYKMDDGKTVDIPKDPKRIAVVAPTYAGGLKKLGANIVAVNQQVDQSKVLKDKFKGVTKIGDGDVEKVAKEKPDLIIVYSTDKDIKKYQKVAPTVVVDYNKHKYLEQQEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLKMQPEQQKLTAKAGWAEVKQEEIEKYAGDYIVSTSEGKPTPGYESTNMWKNLKATKEGHIVKVDAGTYWYNDPYTLDFMRKDLKEKLIKAAK
>LS483317.1|SQE84438.1|2346052_2346994_-|Purine-nucleosidase
MTKKVYFNHDGGVDDLVSLFLLLQMENVHLIGVSTIGADCYLEPSLSASVKIINRFSNEDIQVAPSYERGKNPFPKEWRMHAFFMDALPILNEPVKHVASNVSDKEAFEDIIQTLKRQSEKVTLLFTGPLTDLAKALQKDSSIVQYIEKLVWMGGTFLPKGNVEEPEHDGSAEWNAYWDPEAVKIVFDSDIEIDMVALESTNQVPLTLDVRQRWANERQYTGVDFLGVSYAAVPPLTHFITNSTYFLWDVLTTAYIGNKDLVHSIEKKVDVISYGPSQGKTFECNDGRKINVINHVDNNAFFDYITALAKKVN
>LS483317.1|SQE84437.1|2345377_2345932_-|BioY-family-protein
MTTKQLVYTALMTAIIAILGLVPVIPLPFSSVPIVLQNIGIFLAGVILGRKYGTLSVIVFLLLVVAGLPLLSGGRGGIGVFAGPSAGFLLLYPVVAFMIGAIRDRFINEINFWILFVGILVFGVIALDVIGTLIMGMIINIPFTKAISISLAYLPGDILKAIVASLIGTALLNHSQFRQIMGLK
>LS483317.1|SQE84436.1|2344535_2345306_-|acetyltransferase
MASISMSDIYCNGTIFENDDEQLIYLTPSFPQRYTSNTWIYKKTPTEERWLKDLERQHQLHTNQGSNHYAFSFPENEQLDNHWMAMFKDMNFELGIMELYAIESDALANLPRNSDVEIAIVDESHIDDYLKVAYQFSLPFGKDYADAHEEMVREHYQKDAIKRLVAYLNNEPIGVVDVIESENYIELDGFGVLEQFRHQGIGSTIQSLIGEYAISKNHKPIILVTDGEDTAKDMYAKQGYVYQSFCYQILKEDIGN
>LS483317.1|SQE84435.1|2343566_2344364_+|Formate-dehydrogenase-chain-D
MNKDVSLGQPIVRYEDGKLFNTTDQYVTEFPLTIMVNGEEFATVICSPTNLEELVIGFLASEGAILKRDELKSVLIDDSKGFAHVELNKDLGDRFQYSTKRMIASCCGKSREFYFQNDAAIAKTSMSKITLTPIQIINMMTRLQSASHIYQETGGLHNAAISDGLTFFVHRQDIGRHNALDKLYGFCIQRHITVRDKVLIFSGRISSEILIKAAKIGVGVILSKSAPTTLAVTLANDLNITAVGFIRNGGFNIYSHPERIIDSEQ
>LS483317.1|SQE84434.1|2342494_2343277_-|Molybdate-binding-protein
MKMKRLFAIVIAMLLVLAGCSNSNDNNESKKDDADNGKKQEIQVAAAASLTDVTKKLASEFKKEHKNADIKFNYGGSGALRKQIESGAPVDVFMSANTKDVDALKDKNKAHDTYKYAKNSLVLIGDKDSNYTSVKDLKDNDKLALGEVKTVPAGKYAKQYLDNNNLFKEVESKIVYAKDVKQVLNYVEKGNAKQGFVYKTDLYKQNKKIDTVKVIKEVELKKPITYEAGATSDSKLAKEWMEFLKSDKAKEILKEYHFAA
>LS483317.1|SQE84433.1|2341809_2342481_-|Molybdenum-transport-system-permease-protein-modB
MPDLTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKVLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLPVVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDKYKEVD
>LS483317.1|SQE84432.1|2341203_2341809_-|Molybdenum-transport-ATP-binding-protein-modC
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIE
>LS483317.1|SQE84431.1|2340030_2341035_-|Molybdopterin-biosynthesis-MoeB-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDIPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>LS483317.1|SQE84441.1|2350172_2351078_-|Urea-transporter
MKMIDVLLKNISQVVLISNKWTGLFILIGLFVANWTVGLAAMIGSIIAYAFARYINYSEAEINDGLAGFNPVLTAIALTIFLDKSGLDIVITMIATLLTLPVAAAVREVLRPYKVPMLTMPFVIVTWFTILLSGQVKFVDTSLKLMPQNIETVNFSNNDRIHFIQSLFEGFSQVFIEASVIGGVCILIGILIASRKAALLAVIASLLSFIIVALLGGNYDDINQGLFGYNFVLMAIALGYTFKTAINPYISTFLGVLLTVVVQLGTTTLLEPFGLPALTLPFIIVTWILLFAGIKHDKVDA
>LS483317.1|SQE84442.1|2351337_2351640_+|urease-subunit-gamma
MHFTQREQDKLMIVVAAEVARRRKARGLKLNHPEALALISDELLEGARDGKTVAELMSYGRQILNKEDVMDGVEHMITDIEIEATFPDGTKLITVHHPIV
>LS483317.1|SQE84443.1|2351653_2352064_+|urease-subunit-beta
MIPGEIITKSTEVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAGKRKIFGFRGMVNGPIDESRVYRPTDEDDEYAGVFGDNGDENVNKKGGKRS
>LS483317.1|SQE84444.1|2352060_2353776_+|Urease-alpha-subunit
MSFKMTQNQYTSLYGPTVGDSIRLGDTNLFAQIEKDYAVYGEEATFGGGKSIRDGMAQNPRVTRDDVNVADLVISNAVIIDYDKVVKADIGIKNGYIFAIGNAGNPDIMDNVDIIIGSTTDIIAAEGKIVTAGGIDTHVHFINPEQAEVALESGITTHIGGGTGASEGSKATTVTPGPWHIHRMLEAAEGLPINVGFTGKGQATNPTALIEQINAGAIGLKVHEDWGATPSALSHALDVADEFDVQIALHADTLNEAGFMEDTMAAVKDRVLHMYHTEGAGGGHAPDLIKSAAFSNILPSSTNPTLPYTHNTVDEHLDMVMITHHLNAAIPEDIAFADSRIRKETIAAEDVLQDMGVFSMISSDSQAMGRVGEVITRTWQVAHRMKEQRGPLDGDFEHNDNNRIKRYIAKYTINPAITHGISEYVGSIEPGKLADIVLWDPIFFGVKPELVVKGGLINSAVNGDANGSIPTSEPMKYRKMYGQYGGNLTSTSMTFVSKTAYENGINRALNLKRMVRPVKNIRQLSKADMKNNSATPKLDVDPQTYEVYVDGEKITSNAATELPLTQRYFLF
>LS483317.1|SQE84445.1|2353788_2354241_+|Urease-accessory-protein-UreE
MIVEEIQGNIANLSNSEKQKHVEKVYLENSDLVKRIQRVVTDHGTEIGIRLKQPIDLQYGDILYADDHNMIIVDVNSEDLLVIQPRTLQEMGDIAHQLGNRHLPAQFTETEMLVQYDYLVEDLLKSLGIPYVREDRKVNKAFRHIGHSHD
>LS483317.1|SQE84446.1|2354233_2354923_+|Urease-accessory-protein-UreF
MINHTHLRLFQFCDSQFPTGAFSHSFGLETYIQRNIIHDDRTFIAWLKMFLQEQLTYSDGLAMRLVYDALENDDTQKVLHIDKLMFVQNLPKETRVGAKQMGTRMVKLALELYNSPWIAWYHQQMQDKKAKLNPAICFTMLGHHLGVDIETIIDYYLYQNVSSLTQNAVRAIPLGQTAGQKIVTHMIPYIEETRKQISELKEADFGMTAPGLELNQMAHENVNVRIFIS
>LS483317.1|SQE84447.1|2354935_2355550_+|Urease-accessory-protein-UreG
MANPIKIGIGGPVGAGKTQLIEKVVKRLSKEMSIGVITNDIYTKEDEKILVNSGVLPESRIIGVETGGCPHTAIREDASMNFAAIDELLERHDDIELIFIESGGDNLAATFSPELVDFSIYIIDVAQGEKIPRKGGQGMIKSDFFVINKTDLAPYVGASLEQMAEDTKVFRGKRPFTFTNLKTDEGLDEVIDWIERDTLLKGLS
>LS483317.1|SQE84448.1|2355549_2356386_+|urease-accessory-protein-UreD
MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQSTIPTFYIVNVGGGYLDGDRYRMNVNVEDNAKVTLTSQGATKIYKTPSDHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGFAVRIFAYRTQIIEKILETIQSYIAENIYNRKLDFLRKY
>LS483317.1|SQE84449.1|2356574_2356922_-|staphylococcal-accessory-regulator
MSKINDINDLVNATFQVKKFFRDTKKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISELEEYIKN
>LS483317.1|SQE84450.1|2357349_2357676_-|Uncharacterised-protein
MILDNVNPNDLFPTEKKGPSVLGIIEYQVQGKNEFEGAFIATNERLIMNVDMNGQFYYRSISYNEIEKIDYDGQTIMFKFNIGNVPMHDIKSDNVEMFVEYVKQHMIV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483317_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483317_4

2608924-2609009

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483317_4

>merge|LS483317|4|2608924-2609009|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTACTTTGTTGGGGCCCCGCCAACTCGCACATTATTGTAAGCTGACTTT

>LS483317|4|4|2608924-2609009|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTACTTTGTTGGGGCCCCG
CCAACTCGCACATTATTGTAAGCTGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483317.1\|SQE84691.1\|2615656_2616067_-\|thioesterase-superfamily-protein	unknown	unknown	gnl\|CDD\|223894
LS483317.1\|SQE84682.1\|2608176_2608668_+\|Phosphinothricin-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
LS483317.1\|SQE84679.1\|2605829_2606465_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LS483317.1\|SQE84680.1\|2606479_2607202_+\|putative-peptide-export-permease-protein	unknown	unknown	unknown
LS483317.1\|SQE84687.1\|2612768_2612972_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483317.1\|SQE84688.1\|2613127_2614090_+\|DMT-superfamily-drug/metabolite-transporter	unknown	unknown	gnl\|CDD\|273359
LS483317.1\|SQE84677.1\|2603469_2604462_+\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|183550
LS483317.1\|SQE84690.1\|2615270_2615615_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
LS483317.1\|SQE84685.1\|2610494_2611175_-\|L-serine-dehydratase,-beta-subunit	unknown	unknown	gnl\|CDD\|224674
LS483317.1\|SQE84681.1\|2607362_2607983_-\|LPXTG-specific-sortase-A	unknown	unknown	gnl\|CDD\|226287
LS483317.1\|SQE84673.1\|2600484_2600919_-\|Transcriptional-regulator,-MarR-family	unknown	unknown	gnl\|CDD\|197670
LS483317.1\|SQE84678.1\|2604708_2605509_-\|hydrolase	unknown	unknown	gnl\|CDD\|223635
LS483317.1\|SQE84689.1\|2614169_2615138_-\|Esterase/lipase	unknown	unknown	gnl\|CDD\|223730
LS483317.1\|SQE84686.1\|2611177_2612221_-\|Transcriptional-regulator-pfoR	unknown	unknown	gnl\|CDD\|224218
LS483317.1\|SQE84675.1\|2601603_2602410_+\|Glyoxalase-family-protein	unknown	unknown	gnl\|CDD\|225312
LS483317.1\|SQE84683.1\|2609232_2609403_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483317.1\|SQE84684.1\|2609581_2610481_-\|L-serine-dehydratase,-alpha-subunit	unknown	unknown	gnl\|CDD\|129801
LS483317.1\|SQE84674.1\|2601144_2601429_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|225261
LS483317.1\|SQE84692.1\|2616446_2618570_-\|Pts-system,-glucose-specific-iiabc-component	unknown	unknown	gnl\|CDD\|273923
LS483317.1\|SQE84676.1\|2602528_2603200_-\|NAD(P)H-dependent-quinone-reductase	unknown	unknown	gnl\|CDD\|380324

Protein	Function_ID	Function_description	E-value
LS483317.1\|SQE84691.1\|2615656_2616067_-\|thioesterase-superfamily-protein	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	3.6835e-33
LS483317.1\|SQE84682.1\|2608176_2608668_+\|Phosphinothricin-N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	3.51965e-68
LS483317.1\|SQE84679.1\|2605829_2606465_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.10519e-19
LS483317.1\|SQE84688.1\|2613127_2614090_+\|DMT-superfamily-drug/metabolite-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.02516e-18
LS483317.1\|SQE84677.1\|2603469_2604462_+\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|183550	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional.	0
LS483317.1\|SQE84690.1\|2615270_2615615_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.20874e-17
LS483317.1\|SQE84685.1\|2610494_2611175_-\|L-serine-dehydratase,-beta-subunit	gnl\|CDD\|224674	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism].	5.37171e-77
LS483317.1\|SQE84681.1\|2607362_2607983_-\|LPXTG-specific-sortase-A	gnl\|CDD\|226287	COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane].	7.50498e-57
LS483317.1\|SQE84673.1\|2600484_2600919_-\|Transcriptional-regulator,-MarR-family	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.69586e-21
LS483317.1\|SQE84678.1\|2604708_2605509_-\|hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	2.61574e-53
LS483317.1\|SQE84689.1\|2614169_2615138_-\|Esterase/lipase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.60448e-53
LS483317.1\|SQE84686.1\|2611177_2612221_-\|Transcriptional-regulator-pfoR	gnl\|CDD\|224218	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism].	3.24419e-59
LS483317.1\|SQE84675.1\|2601603_2602410_+\|Glyoxalase-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	1.48895e-125
LS483317.1\|SQE84692.1\|2616446_2618570_-\|Pts-system,-glucose-specific-iiabc-component	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
LS483317.1\|SQE84684.1\|2609581_2610481_-\|L-serine-dehydratase,-alpha-subunit	gnl\|CDD\|129801	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit. This enzyme is also called serine deaminase. L-serine dehydratase converts serine into pyruvate in the gluconeogenesis pathway from serine. This model describes the alpha chain of an iron-sulfur-dependent L-serine dehydratase, found in Bacillus subtilis. A fairly deep split in a UPGMA tree separates members of this family of alpha chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	1.7844e-107
LS483317.1\|SQE84674.1\|2601144_2601429_+\|acetyltransferase	gnl\|CDD\|225261	COG2388, COG2388, Predicted acetyltransferase [General function prediction only].	1.06462e-34
LS483317.1\|SQE84676.1\|2602528_2603200_-\|NAD(P)H-dependent-quinone-reductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	1.85295e-69

>LS483317.1|SQE84682.1|2608176_2608668_+|Phosphinothricin-N-acetyltransferase
MIRCSKKEDLNAILAIYNDAIINTTAVYTYEPQTIDERVAWFETKQRKHEPIFVFEENGSVLGFATFGSFRPWPAYLYTIEHSIYVDASARGKGIASQLLHHLIVEAKAKGYRALVAGIDASNKASIQLHQKFAFKHAGTLTNVGFKFNRWLDLAFYELDLQD
>LS483317.1|SQE84681.1|2607362_2607983_-|LPXTG-specific-sortase-A
MKKWTNRLMTIAGVVLILVAAYLFAKPHIDNYLHDKDKDEKIEQYDKNVKEQASKDKKQQAKPQIPKDKSKVAGYIEIPDADIKEPVYPGPATPEQLNRGVSFAEENESLDDQNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVGNETRKYKMTSIRDVKPTDVEVLDEQKGKDKQLTLITCDDYNEKTGVWETRKIFVATEVK
>LS483317.1|SQE84680.1|2606479_2607202_+|putative-peptide-export-permease-protein
MKLEFKKSISNKIIYTLGVLFIFLFLLGYFLPIGIDKVKSLSYSQFFFSSYTVATQLGFLLFSFVFAYFINKEYSNKNILFYKLIGDNIFTFFYKKVAVLFFECLVFIILSITIISIIYSDFSHYLLLIILFSLVILQYILVVGTISMVSPNILISLGISIVYWIGSVILVAINKNIFGIVAPFEASNTMYRAVEKILNNESTFICPTEIINTVSFFVLLFIVNTIVLLLSRKRWLKIGM
>LS483317.1|SQE84679.1|2605829_2606465_+|ABC-transporter-ATP-binding-protein
MKLNNYSLKVKNKQLVDNCDLNFYLGQINHIVGKNGVGKSLLAKDFLLNNSGNIPKSISQNVSLISSSSNIPNDITKDFLLSLLKSKFENNRQTFDKIYNILNIEAIPSNVLLKNLSDGQKQKLKLLSFLLEDHDLIILDEITNALDKKTVNEIYEFLNAFIQSHQTKTIINITHNLSDLSALPGKYFIFKDLQIEEYQSKEEVINDYINL
>LS483317.1|SQE84678.1|2604708_2605509_-|hydrolase
MVKAIAVDMDGTFLDSKKTYDKPRFEAIFTELRNRDITFIAASGNQYAKLKSIFGDRDMYFISENGAVIYKGNELYNYKSFNRQVFQQVVDYLNMNQGIDQLVICGLKSAYILKHTSEAFKEDTRFYYHQLKEIDSLQQLPEDDYVKIAFNINRETHPNVDEEVATQFSNDIKLVSSGHDSIDIIMPNMTKGQALKRLLDKWGMSSSELMAFGDANNDKDMLAFAKHSYVMENSHDEELFNIASAVAPSNDKQGVLTIIEQEVLKK
>LS483317.1|SQE84677.1|2603469_2604462_+|D-2-hydroxyacid-dehydrogenase
MTKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN
>LS483317.1|SQE84676.1|2602528_2603200_-|NAD(P)H-dependent-quinone-reductase
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSWGAAKQLDTASHFVLIFARKNVTSKSPYVQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTEQFGLSVMVAFGYRQQDPPKNKTRQAYEDVIEWVGPKE
>LS483317.1|SQE84675.1|2601603_2602410_+|Glyoxalase-family-protein
MAFHDKTATQVTNIELNVRDLDLMTTFYKNILGLSVKSSDDNTTVLSVGTGGHTLTLHLLEDVRQTSPREAGLFHIAFLLPTTEDLANFLYFVAQKNMGIGAGDHLVSEALYFNDPEGNGIEVYRDRPSSSWEWQNGKVKMDTLEVDSQTLLTHRTDEGWQGMPAKGMIGHLHLKTHDLDAAYQCYIEQLGFQHVSDFPRALFMSTNHYHHHIAANTWQSNQARQNNAQSYGLTHVDIYQPDASTHTFTAPEGFDITVHSNTDLVPEK
>LS483317.1|SQE84674.1|2601144_2601429_+|acetyltransferase
MSNLEIKQGENKFYIGDDENHALAEITYRFVDNNEINIDHTGVSDELGGQGVGKKLVKAVVEHARENHLKIIASCSFAKHMLEKEDSYQDVYLG
>LS483317.1|SQE84673.1|2600484_2600919_-|Transcriptional-regulator,-MarR-family
MDRTKQSLNVFVGMNRALDTLEQITKEDVKRYGLNITEFAVLELLYNKGPQPIQRIRDRVLIASSSISYVVSQLEDKGWITREKDKDDKRVYMACLTEKGQSQMADIFPKHAETLTKAFDVLTKDELTILQQAFKKLSAQSTEV
>LS483317.1|SQE84683.1|2609232_2609403_-|Uncharacterised-protein
MLRLSIIFIAFIINTTITYGYTTEGTWVNLLFKSLSLSMIIVFMFYYIRFVIEKKR
>LS483317.1|SQE84684.1|2609581_2610481_-|L-serine-dehydratase,-alpha-subunit
MFDSIRETIDYAVENNMSFADIMVKEEMELSGKSRDEVRAQMKQNLDVMRDAVIKGTTGDGVESVTGYTGHDAAKLRDYNETHHALSGYEMIDAVKGAIATNEVNAAMGIICATPTAGSSGTIPGALFKLEKTHDLTEEQMIDFLFTSALFGRVVANNASVAGATGGCQAEVGSASAMAAAAAVAIFGGSPEASGHAMALAISNLLGLVCDPVAGLVEIPCVMRNAIGSGNALISADLALAGIESRIPVDEVIEAMDKVGRNLPASLRETGLGGLAGTPTGEAIKRKIFGTAEDMVKNN
>LS483317.1|SQE84685.1|2610494_2611175_-|L-serine-dehydratase,-beta-subunit
MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAILGDIPKNIEIHYYESFAQTHQGHGTDVAIVGGAMGYSTFDNRIKSSLEIAADDGIKIDIIEEEGDSIGQHPNCAYIKSSRNDGRYIEIIGISIGGGTIKIKGIHINGLEVDLNHGLPILVVDGNMTKAQVNHFINDINDMKLDCKDEFIKIDEDKCLVVIPLNKAISESTLNTIKEKYSDVNVSYIN
>LS483317.1|SQE84686.1|2611177_2612221_-|Transcriptional-regulator-pfoR
MDILLGVGTLVLVLVIMTLFLKYAPYGKQGLQALSGAACATFLPQAFLSYAIGGVFDIKFLQDIGDLAGSLSGIAVGILTCLNLGVAPVFAVIVGLVLHDFKLLPAFIAAYGVAFLIKWIEKKVPEGLDLIVVILFAPAIAFGLASIITPGVLATLKQIGSAVTAVGDNNPYALAVILGLVIPVTGMTPLSSMVLTSLLGLTGVPMAIGALTCTGSSFVNLILFRKLNIGGPSKAFAVCIEPLTQIDLIAQYPVQLYGTNALIGVVNACIVTFSGLVIGVKGMATPIAGAIVLFGFNNAVTSIVTIATVIIVSIVLAYIIGTLINKFNLMNINFKMPSKKNHIKESV
>LS483317.1|SQE84687.1|2612768_2612972_+|Uncharacterised-protein
MQLSHSVKVAISIYLALIFITFTSYLVIILYTSMTGHDVSHFVLDSQHSHHGSLTQKHLSLPEISFK
>LS483317.1|SQE84688.1|2613127_2614090_+|DMT-superfamily-drug/metabolite-transporter
MLLVLSFKGVRYLANNHSALRLKGIILAIVGACLWGLGGTVSDFLFKYKNINVDWYVTARLVVSGIFLLIMYKMMQPKRSIFSVFQDRRMLGKLLIFSILGMLVVQYAYMASINTGNAAIATLLQYIAPVYIIIWFVIRGVAKLTLFDVLAIIMTLLGTFLLLTNGSFSNLVVNPASLFWGILAGVALAFYTIYPSDLLNRFGSILIVGWAMLISGVAMNLRHPIWHIDITKWDISIILFLIFGIIGGTALAFYFFIDSLQYISAKETTLFGTVEPVVAVIASSLWLHVAFKPFQIVGIILIMILILLLSLKRQPETLDE
>LS483317.1|SQE84689.1|2614169_2615138_-|Esterase/lipase
MRKKWSTLAFGFLVAAYAHIRIKEKRSVKSYMLEQGIRLSRAKRRFMYKEEAMKALEKMALQTAGEYEGTNYQFKMPVTVDKHFGSTVYTVNDKQDKHQRVVLYAHGGAWFQDPLKIHFEFIDELAETLNAKVIMPVYPKIPHQDYQATYVLFEKLYHDLLNQVADSKQIVVMGDSAGGQIALSFAQLLKEKHIVQPGHIVLISPVLDATMQHPEIPDYLKKDPMVGVDGSVFLAEQWAGDTPLDNYKVSPINGDLDGLGRITLTVGTKEVLYLDALNLSQLLSAKGIEHDFIPGYYQFHIYPVFPIPERRRFLYQVKNIIN
>LS483317.1|SQE84690.1|2615270_2615615_-|thioredoxin
MVKQLNSVEAFREFIHQYPLAVVHVMRDQCSVCHAVLPQIEDLMQSYPNVPLAVINQSQVEAIAGELNIFTVPVDLIFMNGKEMHRQGRFIDMQRFEHHLKQMNDSVNNDVDEH
>LS483317.1|SQE84691.1|2615656_2616067_-|thioesterase-superfamily-protein
MTTEGLLVAEKEIEVNGYDIDAMGVVSNIVYIRWFEDLRTAFINQHMNYSTMINQGISPILMKTEAEYKVPVTIHDKPVGRIYLVKASKMKWVFQFEIVSAHGVHCIGTQTGGFYRLSDKKITSVPQVFQDILATK
>LS483317.1|SQE84692.1|2616446_2618570_-|Pts-system,-glucose-specific-iiabc-component
MFMPAFLYMEAEIEIGDVYMFKKLFGQLQRIGKALMLPVAILPAAGILLAFGNAMHNEQLVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLIMNATMGKVLHITIDDIFSYAKGAKELSQAAKEPAHALVLGIPTLQTGVFGGIIMGALAAWCYNKFYNITLPPFLGFFAGKRFVPIVTSVVAIATGVVLSFAWPPIQDGLNSLSNFLLNKNLTLTTFIFGIIERSLIPFGLHHIFYSPFWFEFGSYTNHAGELVRGDQRIWMAQLKDGVPFTAGAFTTGKYPFMMFGLPAAAFAIYKNARPERKKVVGGLMLSAGLTAFLTGITEPLEFSFLFVAPVLYGIHVLLAGTSFLVMHLLGVKIGMTFSGGFIDYILYGLLNWDRSHALLVIPVGIVYAIVYYFLFDFAIRKFKLKTPGREDEETEIRNSSVAKLPFDVLDAMGGKENIKHLDACITRLRVEVVDKSKVDVAGIKALGASGVLEVGNNMQAIFGPKSDQIKHDMAKIISGEITKPSETTVTEEMSDEPVHVEALGTTDIYAPGVGQIIPLSEVPDQVFAGKMMGDGVGFIPEKGEIVAPFDGTVKTIFPTKHAIGLESESGVEVLIHIGIDTVKLNGEGFESLINVDEKVTQGQPLMKVNLAYLKAHAPSIVTPMIITNLENKELVIEDVQDADPGKLIMTVK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	1474040-1474065	0	1.0
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	2504105-2504130	1	0.962
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	270767-270792	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	800593-800618	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	800649-800674	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	844711-844736	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	883617-883642	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	977941-977966	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	1193373-1193398	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	1276746-1276771	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	1276802-1276827	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	1678795-1678820	2	0.923
LS483317_4	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	LS483317.1	2474985-2475010	2	0.923

1. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 1474040-1474065, mismatch: 0, identity: 1.0

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagctactttgttggggccccg	Protospacer
**************************

2. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 2504105-2504130, mismatch: 1, identity: 0.962

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagctactgtgttggggccccg	Protospacer
************ *************

3. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 270767-270792, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
********* ** *************

4. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 800593-800618, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

5. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 800649-800674, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

6. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 844711-844736, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
********* ** *************

7. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 883617-883642, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

8. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 977941-977966, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
********* ** *************

9. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 1193373-1193398, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

10. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 1276746-1276771, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

11. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 1276802-1276827, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

12. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 1678795-1678820, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

13. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to position: 2474985-2475010, mismatch: 2, identity: 0.923

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
********* ** *************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

330593 : 372922

Staphylococcus_phage(82.86%)

terminase,integrase,protease,holin,tail,portal,head,capsid

attL 330483:330500|attR 373608:373625

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
330483:330500	attL	NA	NA	NA	NA
SQE82557.1\|330593_331799_-\|integrase	phage integrase family protein	A7YGM7	Staphylococcus_virus	2.5e-221	99.5
SQE82558.1\|331903_332521_+	phi PVL ORF 30-like protein	A0A2I6PEZ0	Staphylococcus_phage	1.7e-32	43.1
SQE82559.1\|332527_332680_-	Uncharacterised protein	NA	NA	NA	NA
SQE82560.1\|332736_332919_-	Putative cytosolic protein	A0A0H3U4Z4	Staphylococcus_phage	4.1e-27	100.0
SQE82561.1\|333186_333306_-	phage protein	A0A2I6PDS4	Staphylococcus_phage	7.7e-11	100.0
SQE82562.1\|333292_333448_-	phage protein	A0A2I6PDR9	Staphylococcus_phage	2.4e-20	98.0
SQE82563.1\|333459_334167_-	phage transcriptional regulator	G4KNM8	Staphylococcus_phage	7.7e-130	100.0
SQE82564.1\|334337_334577_+	putative plasmid copy control protein	G4KNM9	Staphylococcus_phage	2.3e-38	100.0
SQE82565.1\|334589_335033_+	hypothetical phage-related protein	W5R971	Staphylococcus_phage	1.5e-75	100.0
SQE82566.1\|335047_335188_+	phage protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
SQE82567.1\|335180_335390_-	Uncharacterised protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
SQE82568.1\|335446_335638_+	Uncharacterised protein	Q4ZDR9	Staphylococcus_virus	2.1e-26	100.0
SQE82569.1\|335639_335867_-	Uncharacterised protein	A7TWL9	Staphylococcus_phage	1.7e-38	100.0
SQE82570.1\|335922_336249_+	Uncharacterised protein	G4KNN2	Staphylococcus_phage	5.4e-54	100.0
SQE82571.1\|336245_336464_+	phi PV83 orf 10-like protein	A0A2I6PDV4	Staphylococcus_phage	8.6e-32	98.6
SQE82572.1\|336493_336757_+	DNA-binding protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
SQE82573.1\|336768_336930_+	phage protein	Q4ZDR6	Staphylococcus_virus	1.9e-20	98.1
SQE82574.1\|337022_337352_+	phage protein	A0A2I6PEL3	Staphylococcus_phage	1.4e-33	100.0
SQE82575.1\|337332_337593_+	phage protein	G4KNN5	Staphylococcus_phage	1.6e-40	90.7
SQE82576.1\|337602_337824_+	phage protein	A0A0E3TAJ7	Staphylococcus_phage	3.2e-34	98.6
SQE82577.1\|337816_338596_+	Uncharacterised protein	A0A1W6JPW0	Staphylococcus_phage	1.4e-140	98.8
SQE82578.1\|338626_339178_+	phi ETA orf 18-like protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
SQE82579.1\|339190_339862_+	phi PV83 orf 19-like protein	Q9G025	Staphylococcus_virus	9.8e-127	98.2
SQE82580.1\|339854_340610_+	hypothetical phage-related protein	C8CGZ1	Staphylococcus_phage	3.8e-143	100.0
SQE82581.1\|340609_340966_+	phage protein	M9NS37	Staphylococcus_phage	1.8e-63	99.2
SQE82582.1\|340962_342204_+	prophage L54a, replicative DNA helicase	C8CGZ3	Staphylococcus_phage	2.2e-228	99.5
SQE82583.1\|342200_342416_+	hypothetical phage-related protein	Q4ZAY6	Staphylococcus_virus	3.7e-35	100.0
SQE82584.1\|342419_342641_+	putative phi ETA-like protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
SQE82585.1\|342651_343056_+	hypothetical phage-related protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
SQE82586.1\|343060_343246_+	phage protein	W5R8N4	Staphylococcus_phage	1.4e-27	100.0
SQE82587.1\|343246_343576_+	phage protein	C8CGZ9	Staphylococcus_phage	6.7e-20	94.2
SQE82588.1\|343572_343863_+	phage protein	A0A0H3U4U9	Staphylococcus_phage	6.7e-48	97.9
SQE82589.1\|343862_344117_+	phage protein	A0A059T7J9	Staphylococcus_phage	3.7e-42	98.8
SQE82590.1\|344122_344365_+	phage family protein	Q4ZDP7	Staphylococcus_virus	1.6e-39	96.2
SQE82591.1\|344375_344786_+	putative phage PVL protein	A0A0H4IPW3	Staphylococcus_phage	1.0e-46	74.8
SQE82592.1\|344785_345061_+	Phage protein	Q4ZA41	Staphylococcus_virus	3.0e-42	95.6
SQE82593.1\|345053_345305_+	Phage protein	A0A2H4PQK1	Staphylococcus_phage	5.4e-38	97.6
SQE82594.1\|345294_345468_+	Uncharacterised protein	A0A2H4PQJ2	Staphylococcus_phage	1.8e-24	100.0
SQE82595.1\|345468_345750_+	Uncharacterised protein	A0A2I6PDX3	Staphylococcus_phage	8.5e-48	100.0
SQE82596.1\|345750_345912_+	Uncharacterised protein	A0A2I6PDW5	Staphylococcus_phage	2.4e-23	100.0
SQE82597.1\|345926_346460_+	dUTPase family protein	E0Y3R2	Staphylococcus_virus	1.3e-94	99.4
SQE82598.1\|346496_346703_+	phage protein	Q4ZCV6	Staphylococcus_virus	7.1e-20	98.5
SQE82599.1\|346699_346849_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
SQE82600.1\|346848_347049_+	phage protein	R9QT57	Staphylococcus_phage	1.2e-27	95.5
SQE82601.1\|347071_347533_+	Phage protein	R9QT84	Staphylococcus_phage	1.9e-73	99.3
SQE82602.1\|347647_348100_+	hypothetical phage-related protein	D2JLE1	Staphylococcus_phage	1.4e-79	100.0
SQE82603.1\|348106_348460_+	phage endonuclease	D2JLE2	Staphylococcus_phage	1.3e-66	100.0
SQE82604.1\|348588_349056_+\|terminase	phage terminase small subunit	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
SQE82605.1\|349058_350753_+	phage Terminase family protein	D2JLE4	Staphylococcus_phage	0.0e+00	100.0
SQE82606.1\|350727_350967_+	phi PVL orf 3-like protein	A7TWC1	Staphylococcus_phage	7.0e-35	100.0
SQE82607.1\|350972_352223_+\|portal	portal protein	D2JLE6	Staphylococcus_phage	2.2e-236	99.8
SQE82608.1\|352215_352800_+\|head,protease	prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
SQE82609.1\|352887_354135_+\|capsid	phage major capsid protein, HK97 family	A7TWC4	Staphylococcus_phage	5.6e-208	99.8
SQE82610.1\|354170_354329_+	Bacteriophage	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
SQE82611.1\|354337_354670_+\|head,tail	phage gp6-like head-tail connector family protein	D2JLF0	Staphylococcus_phage	2.1e-58	100.0
SQE82612.1\|354656_354992_+\|head,tail	phage head-tail adaptor	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
SQE82613.1\|354991_355369_+	gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
SQE82614.1\|355365_355746_+	phi PVL orf 12-like protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
SQE82615.1\|355746_356700_+\|tail	phage major tail, phi13 family protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
SQE82616.1\|356764_357211_+	Bacteriophage	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
SQE82617.1\|357448_362101_+\|tail	phage tail tape measure protein, TP901 family, core region	Q8SDK4	Staphylococcus_phage	0.0e+00	95.4
SQE82618.1\|362100_363591_+\|tail	phage tail family protein	D2JLF8	Staphylococcus_phage	1.9e-292	97.6
SQE82619.1\|363606_367392_+	phage minor structural protein	Q6R866	Staphylococcus_virus	0.0e+00	96.3
SQE82620.1\|367381_367534_+	phage protein	D2JLG0	Staphylococcus_phage	1.2e-19	98.0
SQE82621.1\|367580_367868_+	phage protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
SQE82622.1\|367991_368222_+	phage protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
SQE82623.1\|368759_369014_+\|holin	Phage holin	D2JLG4	Staphylococcus_phage	3.4e-40	98.8
SQE82624.1\|369025_369781_+	Autolysin	Q4ZCZ2	Staphylococcus_virus	8.4e-151	98.0
SQE82625.1\|370219_371155_+	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.6e-162	91.5
SQE82626.1\|371156_372137_+	Panton-Valentine leukocidin LukF-PV chain precursor	Q9MBN2	Staphylococcus_prophage	1.5e-152	83.5
SQE82627.1\|372577_372922_+	Involved in expression of fibrinogen binding protein, phage associated	A7TWS0	Staphylococcus_phage	2.5e-25	56.2
373608:373625	attR	NA	NA	NA	NA

DBSCAN-SWA_2

769425 : 777245

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE82985.1\|769425_770481_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
SQE82986.1\|770480_771167_-	Response regulator SaeR	NA	NA	NA	NA
SQE82987.1\|771141_771615_-	DoxX family protein	NA	NA	NA	NA
SQE82988.1\|771956_772397_-	lipoprotein	NA	NA	NA	NA
SQE82989.1\|772676_773261_-	Uncharacterised protein	NA	NA	NA	NA
SQE82990.1\|773359_774073_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
SQE82991.1\|774076_774496_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
SQE82992.1\|774497_775166_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
SQE82993.1\|775516_776110_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	6.8e-39	44.0
SQE82994.1\|776093_777245_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_3

789217 : 803736

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE83003.1\|789217_790276_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	5.7e-20	26.1
SQE83004.1\|790433_790982_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
SQE83005.1\|791582_792500_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
SQE83006.1\|792782_794288_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
SQE83007.1\|794628_795129_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
SQE83008.1\|795148_796015_-	Integral membrane domain protein	NA	NA	NA	NA
SQE83009.1\|796815_797214_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
SQE83010.1\|797176_799282_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
SQE83011.1\|799399_800371_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
SQE83012.1\|801021_802035_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
SQE83013.1\|802021_802978_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
SQE83014.1\|802974_803736_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.0e-18	31.6

DBSCAN-SWA_4

891966 : 938812

Staphylococcus_phage(53.52%)

terminase,holin,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE83099.1\|891966_893208_+	Selenocysteine lyase	Q2XUY6	environmental_halophage	8.2e-111	44.8
SQE83100.1\|893197_893662_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA
SQE83101.1\|893812_895210_+	Scaffold protein sufB	NA	NA	NA	NA
SQE83102.1\|895277_896327_-	Integrase	A1KWY3	Staphylococcus_virus	4.5e-203	99.7
SQE83103.1\|896389_896905_-	putative lipoprotein	I1W624	Staphylococcus_phage	7.2e-37	99.4
SQE83104.1\|896908_897409_-	Uncharacterised protein	B7T094	Staphylococcus_virus	2.6e-71	99.4
SQE83105.1\|897461_897647_-	PV83 orf 4-like protein	A0A2I6PDS4	Staphylococcus_phage	5.2e-22	90.2
SQE83106.1\|897703_898342_-	phage repressor protein	A0A0E3TAG1	Staphylococcus_phage	8.8e-117	100.0
SQE83107.1\|898532_898787_+	phage DNA-binding protein	B7T095	Staphylococcus_virus	1.8e-41	100.0
SQE83108.1\|898802_899006_+	Uncharacterised protein	A0A0E3XBM9	Staphylococcus_phage	4.7e-32	100.0
SQE83109.1\|899002_899137_-	Uncharacterised protein	A0A0E3T9H2	Staphylococcus_phage	5.5e-13	100.0
SQE83110.1\|899193_899985_+	prophage L54a, antirepressor	Q8SDX0	Staphylococcus_phage	7.2e-145	99.2
SQE83111.1\|899985_900210_+	phage protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
SQE83112.1\|900249_900699_+	phi PV83 orf 10-like protein	A0A0H3U2S4	Staphylococcus_phage	3.3e-78	98.7
SQE83113.1\|900646_901030_-	Uncharacterised protein	A0A097PAT1	Streptococcus_pyogenes_phage	2.5e-10	31.6
SQE83114.1\|901101_901332_+	phage protein	A0A1X9H0Q4	Staphylococcus_phage	1.5e-31	100.0
SQE83115.1\|901315_901483_+	phage protein	Q9MBS6	Staphylococcus_prophage	8.9e-21	94.5
SQE83116.1\|901483_901804_+	Uncharacterised protein	A0A0K1LL36	Staphylococcus_phage	1.4e-54	99.1
SQE83117.1\|901895_902156_+	phage protein	Q9MBS4	Staphylococcus_prophage	1.4e-41	96.5
SQE83118.1\|902170_902650_+	phage protein	Q4ZCX2	Staphylococcus_virus	4.0e-82	98.7
SQE83119.1\|902649_903288_+	putative phage single-strand DNA binding protein	D2JGK1	Staphylococcus_phage	5.3e-114	99.1
SQE83120.1\|903287_903713_+	Single-stranded DNA-binding protein, phage associated	R4IG44	Staphylococcus_phage	6.3e-71	96.5
SQE83121.1\|903726_904401_+	phage protein	Q4ZAK7	Staphylococcus_virus	5.4e-125	95.5
SQE83122.1\|904393_905158_+	hypothetical phage-related protein	A9CR67	Staphylococcus_phage	5.4e-137	98.8
SQE83123.1\|905157_905514_+	phage protein	M9NS37	Staphylococcus_phage	9.0e-63	97.5
SQE83124.1\|905510_906752_+	prophage L54a, replicative DNA helicase	A0A0E3T8L1	Staphylococcus_phage	1.4e-227	99.3
SQE83125.1\|906748_906964_+	hypothetical phage-related protein	A9CR72	Staphylococcus_phage	1.2e-33	95.8
SQE83126.1\|906966_907188_+	putative phi ETA-like protein	Q9G021	Staphylococcus_phage	1.1e-34	98.6
SQE83127.1\|907198_907603_+	hypothetical phage-related protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
SQE83128.1\|907607_907793_+	PV83 orf 23-like protein	A0A0H4IPE3	Staphylococcus_phage	1.7e-25	95.1
SQE83129.1\|907793_908051_+	helix-turn-helix DNA binding protein	Q9MBR5	Staphylococcus_prophage	1.3e-39	96.5
SQE83130.1\|908063_908423_+	PVL ORF-50-like family	Q8SDV7	Staphylococcus_phage	3.8e-61	98.3
SQE83131.1\|908422_908680_+	phage protein	B5WZM8	Staphylococcus_phage	1.3e-42	98.8
SQE83132.1\|908682_908883_+	phage protein	C5I650	Staphylococcus_phage	7.4e-30	98.5
SQE83133.1\|908897_909140_+	phage family protein	Q4ZDP7	Staphylococcus_virus	1.9e-40	97.5
SQE83134.1\|909154_909409_+	Phage protein	A0A0H3U469	Staphylococcus_phage	5.0e-39	100.0
SQE83135.1\|909395_909566_+	phage protein	A0A0H3U4U6	Staphylococcus_phage	8.2e-22	100.0
SQE83136.1\|909558_910095_+	dUTPase family protein	A0A0H3U2Z8	Staphylococcus_phage	7.2e-96	100.0
SQE83137.1\|910131_910377_+	phage-like protein	Q9B0F1	Staphylococcus_virus	1.4e-27	87.7
SQE83138.1\|910373_910580_+	Protein of uncharacterised function (DUF1381)	Q4ZDP2	Staphylococcus_virus	6.7e-18	92.6
SQE83139.1\|910576_910750_+	transcriptional activator rinb-like protein	Q4ZBK0	Staphylococcus_phage	6.4e-22	100.0
SQE83140.1\|910750_910897_+	phage protein	A0A059T5A8	Staphylococcus_phage	2.2e-15	100.0
SQE83141.1\|910920_911343_+	phage transcriptional activator RinA	S4V7K2	Staphylococcus_phage	2.1e-74	99.3
SQE83142.1\|911531_912026_+\|terminase	Phage terminase, small subunit	B7T0C5	Staphylococcus_virus	8.6e-88	98.2
SQE83143.1\|912028_913318_+\|terminase	phage-associated terminase large subunit	B7T0C6	Staphylococcus_virus	1.5e-253	98.4
SQE83144.1\|913328_914864_+	phage-like protein	Q4ZDV9	Staphylococcus_virus	4.3e-287	97.7
SQE83145.1\|914870_915866_+\|head	phage putative head morphogenesis protein, SPP1 gp7 family Mu50B	S4V9L8	Staphylococcus_phage	3.2e-182	98.8
SQE83146.1\|915938_916109_+	Uncharacterised protein	Q4ZDN0	Staphylococcus_virus	1.3e-22	98.2
SQE83147.1\|916243_916834_+	phage-like protein	B2ZYY4	Staphylococcus_phage	3.3e-33	88.9
SQE83148.1\|916847_917822_+\|capsid,head	Phage head protein/Phage major capsid protein	B7T0D2	Staphylococcus_virus	5.0e-180	97.8
SQE83149.1\|917843_918131_+	phage-like protein	B7T0D3	Staphylococcus_virus	4.2e-42	91.6
SQE83150.1\|918139_918472_+	phi 11 orf36	B7T0D4	Staphylococcus_virus	1.6e-53	99.1
SQE83151.1\|918468_918771_+	phage-like protein	A4ZFB6	Staphylococcus_virus	1.7e-49	96.0
SQE83152.1\|918770_919118_+	phi 11 orf37	B7T0D5	Staphylococcus_virus	2.4e-60	100.0
SQE83153.1\|919129_919513_+	phi 11 orf38	E0Y3L5	Staphylococcus_virus	1.9e-66	97.6
SQE83154.1\|919533_920115_+\|tail	phage major tail protein, TP901-1 family; phi 11 orf39	B7T0D7	Staphylococcus_virus	1.3e-103	98.4
SQE83155.1\|920176_920542_+	phi 11 orf40	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
SQE83156.1\|920571_920916_+	phi 11 orf41	A0A0F6N3F7	Staphylococcus_phage	1.2e-56	99.1
SQE83157.1\|920932_924400_+	phage tape measure protein	Q4ZDU6	Staphylococcus_virus	4.7e-273	97.4
SQE83158.1\|924412_925360_+	phi 11 orf43	Q8SDT6	Staphylococcus_phage	3.6e-183	99.7
SQE83159.1\|925368_927270_+\|tail	prophage endopeptidase tail family protein	B7T0E2	Staphylococcus_virus	0.0e+00	97.6
SQE83160.1\|927284_929195_+	Putative major teichoic acid biosynthesis protein C	B7T0E3	Staphylococcus_virus	0.0e+00	95.4
SQE83161.1\|929194_931018_+	phiETA ORF57-like protein	M9NUJ5	Staphylococcus_phage	7.7e-299	99.7
SQE83162.1\|931017_931395_+	phage-like protein	M9NRJ7	Staphylococcus_phage	1.1e-61	100.0
SQE83163.1\|931395_931578_+	phage protein	Q4ZB22	Staphylococcus_virus	2.5e-29	100.0
SQE83164.1\|931618_931918_+	phage protein	B7T0E7	Staphylococcus_virus	2.5e-42	100.0
SQE83165.1\|932054_933965_+	phage-related cell wall hydrolase	Q8SDT1	Staphylococcus_phage	0.0e+00	95.8
SQE83166.1\|933977_934391_+	phage protein	M9NUJ6	Staphylococcus_phage	1.6e-74	98.5
SQE83167.1\|934447_934702_+\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
SQE83168.1\|934713_935469_+	Autolysin	Q4ZCZ2	Staphylococcus_virus	9.9e-152	99.6
SQE83169.1\|935656_936751_+	Staphylokinase	Q4ZCZ1	Staphylococcus_virus	3.7e-208	99.7
SQE83170.1\|937206_937626_+	Uncharacterised protein	Q9MBN1	Staphylococcus_prophage	8.7e-81	100.0
SQE83171.1\|937639_938812_+	Uncharacterised protein	Q9MBN0	Staphylococcus_prophage	2.0e-215	100.0

DBSCAN-SWA_5

1094517 : 1102990

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE83313.1\|1094517_1095000_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
SQE83314.1\|1094986_1096111_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
SQE83315.1\|1096114_1096819_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	1.1e-46	41.2
SQE83316.1\|1096818_1097082_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
SQE83317.1\|1097083_1097755_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
SQE83318.1\|1097747_1099937_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	1.8e-140	39.7
SQE83319.1\|1099915_1101400_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.6e-44	31.5
SQE83320.1\|1101392_1102421_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
SQE83321.1\|1102423_1102990_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_6

1275157 : 1332996

Staphylococcus_phage(18.75%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE83484.1\|1275157_1275895_+\|tRNA	tRNA (Guanine37-N1) -methyltransferase	NA	NA	NA	NA
SQE83485.1\|1275997_1276348_+	50S ribosomal protein L19	NA	NA	NA	NA
SQE83486.1\|1276930_1279537_-	integral membrane protein	NA	NA	NA	NA
SQE83487.1\|1279937_1280822_+	50S ribosomal subunit maturation GTPase RbgA	NA	NA	NA	NA
SQE83488.1\|1280805_1281573_+	Ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	1.1e-25	43.4
SQE83489.1\|1281681_1282848_+	Succinyl-CoA ligase [ADP-forming] beta chain	NA	NA	NA	NA
SQE83490.1\|1282869_1283778_+	Succinyl-CoA ligase [ADP-forming] alpha chain	A0A2K9L1S3	Tupanvirus	3.0e-17	33.2
SQE83491.1\|1284101_1284974_+	DNA processing protein	NA	NA	NA	NA
SQE83492.1\|1285147_1287223_+	DNA topoisomerase I	A0A1V0SCS0	Indivirus	1.7e-105	39.2
SQE83493.1\|1287378_1288686_+\|tRNA	tRNA:m(5)U-54 MTase gid	NA	NA	NA	NA
SQE83494.1\|1289102_1289999_+	Site-specific tyrosine recombinase	A0A0K2CP59	Brevibacillus_phage	1.4e-30	31.9
SQE83495.1\|1289995_1290541_+\|protease	ATP-dependent protease HslV	NA	NA	NA	NA
SQE83496.1\|1290606_1292010_+	ATP-dependent endopeptidase hsl ATP-binding subunit	A0A1B2IDZ7	Erwinia_phage	2.9e-27	25.5
SQE83497.1\|1292034_1292808_+	GTP-sensing transcriptional pleiotropic repressor codY	NA	NA	NA	NA
SQE83498.1\|1293149_1293917_+	30S ribosomal protein S2	NA	NA	NA	NA
SQE83499.1\|1294098_1294980_+	Translation elongation factor Ts	NA	NA	NA	NA
SQE83500.1\|1295116_1295839_+	Uridylate kinase	NA	NA	NA	NA
SQE83501.1\|1295857_1296412_+	Ribosome recycling factor	NA	NA	NA	NA
SQE83502.1\|1296784_1297555_+	Undecaprenyl pyrophosphate synthetase	R9W0U9	Flavobacterium_phage	7.3e-25	41.5
SQE83503.1\|1297561_1298344_+	Phosphatidate cytidylyltransferase	NA	NA	NA	NA
SQE83504.1\|1298555_1299842_+\|protease	Membrane-associated zinc metalloprotease	NA	NA	NA	NA
SQE83505.1\|1299861_1301565_+\|tRNA	Prolyl-tRNA synthetase	NA	NA	NA	NA
SQE83506.1\|1301822_1306139_+	DNA polymerase III subunit alpha	A0A0A8WJ41	Clostridium_phage	3.5e-23	41.2
SQE83507.1\|1306428_1306896_+	Putative cytosolic protein	NA	NA	NA	NA
SQE83508.1\|1306916_1308092_+	Transcription termination protein NusA	NA	NA	NA	NA
SQE83509.1\|1308112_1308397_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA
SQE83510.1\|1308393_1308711_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA
SQE83511.1\|1308715_1310833_+	protein translation initiation factor 2 (IF-2)	E3T4N3	Cafeteria_roenbergensis_virus	2.4e-25	25.1
SQE83512.1\|1311218_1311569_+	ribosome-binding factor A	NA	NA	NA	NA
SQE83513.1\|1311738_1312656_+\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
SQE83514.1\|1312670_1313642_+	Riboflavin kinase / FMN adenylyltransferase	A0A1V0SJE1	Klosneuvirus	1.7e-07	32.1
SQE83515.1\|1313756_1314026_+	30S ribosomal protein S15	NA	NA	NA	NA
SQE83516.1\|1316728_1318402_+	Zn-dependent hydrolase	NA	NA	NA	NA
SQE83517.1\|1318658_1321028_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	7.3e-84	47.7
SQE83518.1\|1321032_1321746_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQE83519.1\|1321776_1323042_+\|protease	Zinc protease	A0A1X9I714	Streptococcus_phage	1.2e-40	26.8
SQE83520.1\|1323041_1324328_+	peptidase, M16 family	G3MBJ8	Bacillus_virus	7.9e-16	28.4
SQE83521.1\|1324327_1325032_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA
SQE83522.1\|1325136_1325964_+	protein with ACT domain	NA	NA	NA	NA
SQE83523.1\|1325982_1326375_+	DNA-binding protein	NA	NA	NA	NA
SQE83524.1\|1326408_1326987_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
SQE83525.1\|1327213_1328365_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA
SQE83526.1\|1328529_1329573_+	recombinase A	A0A0S2MVG1	Bacillus_phage	9.3e-124	69.2
SQE83527.1\|1329926_1331486_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA
SQE83528.1\|1331971_1332334_-\|transposase	transposase DDE domain protein	A0A146ICT8	Staphylococcus_phage	4.6e-62	93.2
SQE83529.1\|1332323_1332545_-\|transposase	truncated transposase for IS1272	A0A146ICT8	Staphylococcus_phage	1.1e-34	97.3
SQE83530.1\|1332705_1332996_-\|transposase	transposase for IS1272	A0A146ICT8	Staphylococcus_phage	2.1e-46	96.9

DBSCAN-SWA_7

1713468 : 1722511

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE83871.1\|1713468_1713987_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8
SQE83872.1\|1714008_1716282_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	9.6e-65	29.5
SQE83873.1\|1716484_1718764_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
SQE83874.1\|1719038_1719299_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
SQE83875.1\|1719317_1720457_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.0e-84	44.4
SQE83876.1\|1720479_1721505_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQE83877.1\|1721506_1722511_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1853645 : 1940770

Staphylococcus_phage(92.19%)

tRNA,bacteriocin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE83986.1\|1853645_1860185_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	3.6e-306	96.2
SQE83987.1\|1860512_1860824_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.4e-51	98.1
SQE83988.1\|1860845_1863263_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
SQE83989.1\|1863550_1864732_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
SQE83990.1\|1864841_1865795_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
SQE83991.1\|1865791_1866355_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
SQE83992.1\|1866474_1866876_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
SQE83993.1\|1867446_1868274_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
SQE83994.1\|1868507_1869509_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	4.5e-184	99.4
SQE83995.1\|1869630_1870095_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-69	98.7
SQE83996.1\|1870107_1871289_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	9.5e-226	99.2
SQE83997.1\|1871299_1871932_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	6.4e-112	99.0
SQE83998.1\|1871938_1872982_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	2.6e-195	98.5
SQE83999.1\|1873462_1874965_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
SQE84000.1\|1875486_1875801_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	3.7e-52	97.1
SQE84001.1\|1875800_1877093_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	1.4e-225	98.1
SQE84002.1\|1877179_1878034_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
SQE84003.1\|1878309_1878534_-	putative staphylococcal protein	NA	NA	NA	NA
SQE84004.1\|1878732_1879203_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	1.1e-81	98.1
SQE84005.1\|1879315_1879759_+	comK family protein	NA	NA	NA	NA
SQE84006.1\|1879745_1880189_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	4.9e-58	99.3
SQE84007.1\|1880384_1881122_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
SQE84008.1\|1881556_1882270_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
SQE84009.1\|1882528_1882831_+	membrane protein	NA	NA	NA	NA
SQE84010.1\|1883086_1883452_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	1.4e-58	97.5
SQE84011.1\|1883448_1883802_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	3.9e-18	94.9
SQE84012.1\|1884051_1884885_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.3
SQE84013.1\|1885096_1886005_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
SQE84014.1\|1886129_1887323_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
SQE84015.1\|1887694_1889287_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.6
SQE84016.1\|1889583_1890354_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	2.3e-140	96.8
SQE84017.1\|1890334_1890814_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.1e-84	98.7
SQE84018.1\|1890873_1891131_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
SQE84019.1\|1891127_1892129_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.4e-185	97.9
SQE84020.1\|1892133_1893612_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.7e-278	96.1
SQE84021.1\|1893770_1894253_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	6.1e-78	96.6
SQE84022.1\|1894564_1895179_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	1.7e-24	66.2
SQE84023.1\|1895259_1896255_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	2.7e-72	95.6
SQE84024.1\|1896330_1896957_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	4.9e-88	90.9
SQE84025.1\|1896983_1897727_+	staphylococcal enterotoxin Q	A0EX09	Staphylococcus_phage	7.0e-25	32.1
SQE84026.1\|1897753_1898506_+	enterotoxin C-bovine	A0A097PAT7	Streptococcus_pyogenes_phage	4.9e-50	46.4
SQE84027.1\|1898637_1899195_-	Domain of uncharacterised function (DUF955)	A0A2H4PQN8	Staphylococcus_phage	1.7e-76	94.9
SQE84028.1\|1899565_1899742_-	Uncharacterised protein	NA	NA	NA	NA
SQE84029.1\|1899814_1900132_-	Uncharacterised protein	NA	NA	NA	NA
SQE84030.1\|1900723_1900816_-\|transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	3.7e-05	87.5
SQE84031.1\|1901983_1902427_-	exported protein	NA	NA	NA	NA
SQE84032.1\|1902426_1902870_-	putative protein with DUF1433	NA	NA	NA	NA
SQE84033.1\|1903284_1905822_+	hyaluronate lyase	NA	NA	NA	NA
SQE84034.1\|1905947_1906325_-	exported protein	NA	NA	NA	NA
SQE84035.1\|1906846_1910959_-	[Genomic island nu Sa beta2]	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	98.2
SQE84036.1\|1911720_1912890_-	type I restriction-modification enzyme, S subunit, EcoA family protein	A0A2H4PQP5	Staphylococcus_phage	1.2e-135	67.3
SQE84037.1\|1912906_1914463_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	1.8e-285	98.3
SQE84038.1\|1914823_1915543_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	4.3e-128	97.5
SQE84039.1\|1915689_1916406_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	5.9e-130	97.9
SQE84040.1\|1916573_1917290_-\|protease	serine protease SplB	A0A2H4PQN5	Staphylococcus_phage	1.3e-84	63.0
SQE84041.1\|1917411_1918131_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	1.2e-125	95.0
SQE84042.1\|1918188_1918911_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	7.3e-120	90.0
SQE84043.1\|1919026_1919734_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	1.4e-120	91.9
SQE84044.1\|1920799_1921363_+	beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	1.7e-47	61.9
SQE84045.1\|1921848_1922547_-	lantibiotic ABC transporter protein	A0A2H4PQH0	Staphylococcus_phage	4.2e-112	93.5
SQE84046.1\|1922543_1923305_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	A0A2H4PQH2	Staphylococcus_phage	3.5e-128	96.0
SQE84047.1\|1923301_1923994_-	lantibiotic immunity protein F	A0A2H4PQG7	Staphylococcus_phage	7.0e-120	97.0
SQE84048.1\|1923996_1925391_-\|protease	epidermin leader peptide processing serine protease EpiP	A0A2H4PQH1	Staphylococcus_phage	4.7e-240	92.8
SQE84049.1\|1925400_1925919_-	lantibiotic modifying enzyme	A0A2H4PQG9	Staphylococcus_phage	7.7e-95	99.4
SQE84050.1\|1925934_1927179_-	Epidermin biosynthesis protein epiC	A0A2H4PQH9	Staphylococcus_phage	7.7e-210	88.2
SQE84051.1\|1927171_1930165_-\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	91.6
SQE84052.1\|1930229_1930373_-	lantibiotic gallidermin	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
SQE84053.1\|1931496_1932480_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	1.1e-182	97.6
SQE84054.1\|1932481_1933417_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.7e-172	98.7
SQE84055.1\|1934334_1934790_+	[Genomic island nu Sa beta2]	Q4ZCB9	Staphylococcus_virus	1.7e-61	76.8
SQE84056.1\|1934802_1935591_+	Domain of uncharacterised function DUF1828	A0A2H4PQI0	Staphylococcus_phage	1.2e-139	95.0
SQE84057.1\|1936507_1937263_-	enterotoxin SeN	A0A075M4C7	Staphylococcus_phage	2.5e-38	40.5
SQE84058.1\|1937301_1938087_-	enterotoxin Seu	A0A097PAT7	Streptococcus_pyogenes_phage	3.8e-45	42.7
SQE84059.1\|1938240_1938969_-	extracellular enterotoxin type I precursor	A0A1X9H080	Staphylococcus_phage	3.9e-28	39.2
SQE84060.1\|1939003_1939723_-	enterotoxin SEM	A0A1X9H080	Staphylococcus_phage	6.8e-25	35.2
SQE84061.1\|1940005_1940770_-	enterotoxin SeO	A0A1X9H080	Staphylococcus_phage	2.5e-33	38.2

DBSCAN-SWA_9

2074205 : 2110407

Staphylococcus_phage(64.0%)

terminase,integrase,protease,transposase

attL 2071117:2071136|attR 2086168:2086187

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2071117:2071136	attL	NA	NA	NA	NA
SQE84178.1\|2074205_2074556_-	staphylococcal complement inhibitor (scin) related protein	A7TWS0	Staphylococcus_phage	2.9e-21	53.8
SQE84179.1\|2074712_2075702_-	adenosine deaminase	NA	NA	NA	NA
SQE84180.1\|2075890_2076460_-\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	2.5e-99	96.8
SQE84181.1\|2076456_2076798_-\|transposase	transposase	Q4ZE86	Staphylococcus_phage	4.2e-57	97.3
SQE84182.1\|2076800_2077328_-	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	5.1e-86	94.9
SQE84183.1\|2077380_2078034_-	Uncharacterised protein	Q4ZE82	Staphylococcus_phage	9.0e-117	100.0
SQE84184.1\|2078064_2078406_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
SQE84185.1\|2078941_2079583_-\|transposase	transposase	Q4ZE67	Staphylococcus_phage	1.2e-113	95.8
SQE84186.1\|2079584_2079857_-	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	4.8e-40	90.0
SQE84187.1\|2079843_2080647_-	pathogenicity island replication protein	Q4ZE69	Staphylococcus_phage	3.1e-151	97.4
SQE84188.1\|2080822_2082439_-	bacteriophage resistance protein	A0A1W6JPF4	Staphylococcus_phage	2.8e-244	77.4
SQE84189.1\|2082513_2082813_-	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	3.9e-19	57.0
SQE84190.1\|2082813_2083197_-	pathogenicity island protein	A0A1W6JQI7	Staphylococcus_phage	4.4e-63	96.9
SQE84191.1\|2083198_2083402_-	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-30	98.5
SQE84192.1\|2083386_2083542_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
SQE84193.1\|2083538_2083856_-	mobile element-associated transcriptional regulator, putative	A0A1W6JQE0	Staphylococcus_phage	3.5e-50	97.1
SQE84194.1\|2083871_2084072_-	pathogenicity island protein	A0A1W6JQE8	Staphylococcus_phage	2.4e-20	76.7
SQE84195.1\|2084234_2084912_+	mobile element-associated transcriptional regulator, putative	A0A2H4JGT9	uncultured_Caudovirales_phage	6.9e-11	31.4
SQE84196.1\|2084928_2086101_+\|integrase	mobile element-associated integrase, putative	A0A1W6JQD3	Staphylococcus_phage	1.5e-218	97.4
SQE84197.1\|2086169_2087786_-	heat shock protein 60 family chaperone GroEL	A0A240F779	uncultured_virus	1.2e-157	54.9
2086168:2086187	attR	NA	NA	NA	NA
SQE84198.1\|2087861_2088146_-	Heat shock protein 60 family co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
SQE84199.1\|2088319_2089063_+	abortive infection protein	NA	NA	NA	NA
SQE84200.1\|2089087_2090314_-	membrane anchored Ser-Asp rich fibrinogen-binding protein	NA	NA	NA	NA
SQE84201.1\|2090510_2091137_+	nitroreductase family protein	NA	NA	NA	NA
SQE84202.1\|2091460_2092246_+	Aliphatic amidase amiE	NA	NA	NA	NA
SQE84203.1\|2093161_2093779_+	Accessory gene regulator protein B 4	NA	NA	NA	NA
SQE84204.1\|2093781_2093925_+	Accessory gene regulator D (pheromone precursor, type II)	NA	NA	NA	NA
SQE84205.1\|2093954_2095238_+	accessory gene regulator C	NA	NA	NA	NA
SQE84206.1\|2095256_2095973_+	accessory gene regulator protein A	A0A2H4J4Z6	uncultured_Caudovirales_phage	1.2e-24	32.2
SQE84207.1\|2096339_2097299_-	Fructokinase	NA	NA	NA	NA
SQE84208.1\|2097295_2098780_-	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	5.2e-19	25.6
SQE84209.1\|2098928_2099879_-	Sucrose operon repressor ScrR, LacI family	NA	NA	NA	NA
SQE84210.1\|2100061_2101312_-	ammonium transporter family protein	H8ZJB2	Ostreococcus_tauri_virus	2.4e-41	31.7
SQE84211.1\|2101520_2101745_-	transcriptional regulator	NA	NA	NA	NA
SQE84212.1\|2101804_2102884_-	putative transport system permease protein	NA	NA	NA	NA
SQE84213.1\|2103188_2103824_-	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NA	NA	NA	NA
SQE84214.1\|2104076_2106005_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	5.4e-53	30.4
SQE84215.1\|2106366_2107977_+	MutS-related protein, family 1	A0A0N9R0S5	Chrysochromulina_ericina_virus	4.3e-19	27.0
SQE84216.1\|2108289_2109315_-\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	9.0e-63	40.6
SQE84217.1\|2109307_2109772_-	Ribosomal-protein-S18p-alanine acetyltransferase	NA	NA	NA	NA
SQE84218.1\|2109744_2110407_-\|protease	Inactive protein of metal-dependent protease family, putative molecular chaperone	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: LS483317.1|SQE83499.1|1294098_1294980_+|Translation-elongation-factor-Ts

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483317.1|SQE83499.1|1294098_1294980_+|Translation-elongation-factor-Ts

1294098_1294980_+

293 aa aa

HTH_CodY

Identity	Hit_domain_coverage
NA	NA

1275157-1332996

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483317_4	Orphan	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	1276771-1276746	2
LS483317_4	Orphan	4.1\|2608954\|26\|LS483317\|CRISPRCasFinder	2608954-2608979	26	1276827-1276802	2

1. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to LS483317 position: 1276771-1276746, mismatch: 2

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

2. spacer 4.1|2608954|26|LS483317|CRISPRCasFinder matches to LS483317 position: 1276827-1276802, mismatch: 2

ccgccagctactttgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********* ** *************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483317

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information