CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483311	Staphylococcus aureus strain NCTC6136 genome assembly, chromosome: 1	8 crisprs	cas3,DEDDh,DinG,csa3,WYL	6	3	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483311_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_1

133736-133820

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483311_1

>merge|LS483311|1|133736-133820|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGGAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>LS483311|1|1|133736-133820|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGGAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE67866.1\|128141_129287_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	unknown	unknown	gnl\|CDD\|223458
LS483311.1\|SQE67877.1\|138864_139224_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|227896
LS483311.1\|SQE67864.1\|125861_126749_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	unknown	unknown	gnl\|CDD\|187543
LS483311.1\|SQE67874.1\|135871_136846_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	unknown	unknown	gnl\|CDD\|270271
LS483311.1\|SQE67873.1\|135117_135858_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
LS483311.1\|SQE67875.1\|136842_137604_+\|ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|223673
LS483311.1\|SQE67861.1\|122882_124088_+\|capsular-polysaccharide-synthesis-protein-Cap5K	unknown	unknown	unknown
LS483311.1\|SQE67876.1\|137613_138648_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
LS483311.1\|SQE67871.1\|133881_134085_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483311.1\|SQE67879.1\|140808_142059_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|340887
LS483311.1\|SQE67872.1\|134263_134776_+\|alpha-helical-coiled-coil-protein	unknown	unknown	gnl\|CDD\|379428
LS483311.1\|SQE67867.1\|129351_129678_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
LS483311.1\|SQE67870.1\|132627_133587_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	unknown	unknown	gnl\|CDD\|224151
LS483311.1\|SQE67863.1\|125304_125862_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	unknown	unknown	gnl\|CDD\|225059
LS483311.1\|SQE67868.1\|129684_130068_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|377291
LS483311.1\|SQE67880.1\|142505_149681_+\|thioester-reductase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
LS483311.1\|SQE67869.1\|130494_131982_+\|Aldehyde-dehydrogenase-B	unknown	unknown	gnl\|CDD\|143435
LS483311.1\|SQE67862.1\|124088_125294_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	unknown	unknown	gnl\|CDD\|340825
LS483311.1\|SQE67865.1\|126802_128065_+\|capsular-polysaccharide-synthesis-enzyme	unknown	unknown	gnl\|CDD\|223749
LS483311.1\|SQE67878.1\|139247_140423_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE67866.1\|128141_129287_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
LS483311.1\|SQE67877.1\|138864_139224_+\|Putative-cytosolic-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
LS483311.1\|SQE67864.1\|125861_126749_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.08984e-118
LS483311.1\|SQE67878.1\|139247_140423_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
LS483311.1\|SQE67875.1\|136842_137604_+\|ABC-transporter-permease-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
LS483311.1\|SQE67874.1\|135871_136846_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.66137e-50
LS483311.1\|SQE67876.1\|137613_138648_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	1.09026e-20
LS483311.1\|SQE67862.1\|124088_125294_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.43416e-72
LS483311.1\|SQE67879.1\|140808_142059_+\|integral-membrane-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
LS483311.1\|SQE67872.1\|134263_134776_+\|alpha-helical-coiled-coil-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
LS483311.1\|SQE67867.1\|129351_129678_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	3.1425e-64
LS483311.1\|SQE67870.1\|132627_133587_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
LS483311.1\|SQE67863.1\|125304_125862_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
LS483311.1\|SQE67868.1\|129684_130068_-\|membrane-spanning-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	5.80598e-41
LS483311.1\|SQE67873.1\|135117_135858_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	6.91027e-113
LS483311.1\|SQE67869.1\|130494_131982_+\|Aldehyde-dehydrogenase-B	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
LS483311.1\|SQE67865.1\|126802_128065_+\|capsular-polysaccharide-synthesis-enzyme	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
LS483311.1\|SQE67880.1\|142505_149681_+\|thioester-reductase-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0

>LS483311.1|SQE67870.1|132627_133587_+|putative-cation-efflux-system-membrane-protein-similar-to-CzcD
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>LS483311.1|SQE67869.1|130494_131982_+|Aldehyde-dehydrogenase-B
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>LS483311.1|SQE67868.1|129684_130068_-|membrane-spanning-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>LS483311.1|SQE67867.1|129351_129678_-|Heme-degrading-cytoplasmic-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDIDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>LS483311.1|SQE67866.1|128141_129287_+|Capsular-polysaccharide-synthesis-enzyme-Cap8P
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRPDKPDEFVPLRHK
>LS483311.1|SQE67865.1|126802_128065_+|capsular-polysaccharide-synthesis-enzyme
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEIYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDICLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKYVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVAKSSFEDVSYYNYGNIFNFIDK
>LS483311.1|SQE67864.1|125861_126749_+|Capsular-polysaccharide-synthesis-enzyme-Cap8N
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>LS483311.1|SQE67863.1|125304_125862_+|Capsular-polysaccharide-synthesis-enzyme-Cap5M
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>LS483311.1|SQE67862.1|124088_125294_+|Capsular-polysaccharide-synthesis-enzyme-Cap5L
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVAKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPEMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>LS483311.1|SQE67861.1|122882_124088_+|capsular-polysaccharide-synthesis-protein-Cap5K
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITLIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>LS483311.1|SQE67871.1|133881_134085_-|Uncharacterised-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>LS483311.1|SQE67872.1|134263_134776_+|alpha-helical-coiled-coil-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>LS483311.1|SQE67873.1|135117_135858_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>LS483311.1|SQE67874.1|135871_136846_+|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNDDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>LS483311.1|SQE67875.1|136842_137604_+|ABC-transporter-permease-protein
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>LS483311.1|SQE67876.1|137613_138648_+|acyl-CoA-dehydrogenase
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNVQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLNELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>LS483311.1|SQE67877.1|138864_139224_+|Putative-cytosolic-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>LS483311.1|SQE67878.1|139247_140423_+|NAD-dependent-formate-dehydrogenase
MLFANFALNLTIIQGGGMSNGAVFFVIFLKQATCNTYFKEVKIYHLGEMDMKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>LS483311.1|SQE67879.1|140808_142059_+|integral-membrane-protein
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>LS483311.1|SQE67880.1|142505_149681_+|thioester-reductase-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPTSSANYDLEAFFKQELSTYHFNDSPLFKFKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHLNRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYLPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSGLNVAQLQQAVQHLIARHEILRTQYIVVDDEVRQRIVADVVADFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYIINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEVVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQAAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQMEQDLKQYLNDHLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMHQNQQSLVALPDNLSELQKIVMSRYNLGVLEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: LS483311_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_2

242224-242314

Orphan

Consensus_repeat	Method
GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483311_2

>merge|LS483311|2|242224-242314|CRISPRCasFinder
GGGCCCACACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAA

>LS483311|2|2|242224-242314|CRISPRCasFinder
GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	TTTCTTTTCGAAATTCTCTTTGTTG
GGGCCCACACCCCAACTTGCATTGTCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE67962.1\|252198_252939_+\|Autolysis-response-regulater-LytR	unknown	unknown	gnl\|CDD\|184495
LS483311.1\|SQE67947.1\|233654_233933_+\|PTS-system-galactitol-specific-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
LS483311.1\|SQE67963.1\|253057_253495_+\|holin-like-protein	unknown	unknown	gnl\|CDD\|235222
LS483311.1\|SQE67955.1\|242735_243905_+\|CDP-glycerol:poly(Glycerophosphate)-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|367953
LS483311.1\|SQE67946.1\|233164_233632_+\|PTS-system,-galactitol-specific-IIA-component	unknown	unknown	gnl\|CDD\|238129
LS483311.1\|SQE67959.1\|247657_249379_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|376098
LS483311.1\|SQE67948.1\|234159_235419_+\|PTS-system,-galactitol-specific-IIC-component	unknown	unknown	gnl\|CDD\|226298
LS483311.1\|SQE67961.1\|250441_252196_+\|Autolysis-histidine-kinase-LytS	unknown	unknown	gnl\|CDD\|225814
LS483311.1\|SQE67958.1\|245936_247625_+\|Putative-polyribitolphosphotransferase	unknown	unknown	gnl\|CDD\|367953
LS483311.1\|SQE67957.1\|244889_245915_+\|ribitol-5-phosphate-2-dehydrogenase	unknown	unknown	gnl\|CDD\|176199
LS483311.1\|SQE67949.1\|235436_236492_+\|sorbitol-dehydrogenase	unknown	unknown	gnl\|CDD\|176219
LS483311.1\|SQE67960.1\|249522_250197_+\|DnrN	unknown	unknown	gnl\|CDD\|183940
LS483311.1\|SQE67953.1\|238943_239969_+\|ribitol-5-phosphate-2-dehydrogenase	unknown	unknown	gnl\|CDD\|176199
LS483311.1\|SQE67950.1\|236493_236640_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483311.1\|SQE67956.1\|244180_244897_+\|ribitol-5-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
LS483311.1\|SQE67954.1\|239990_241685_+\|Putative-polyribitolphosphotransferase	unknown	unknown	gnl\|CDD\|367953
LS483311.1\|SQE67964.1\|253487_254189_+\|LrgA-associated-membrane-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
LS483311.1\|SQE67952.1\|238234_238951_+\|D-ribitol-5-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
LS483311.1\|SQE67945.1\|231083_233180_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LS483311.1\|SQE67951.1\|236663_237707_+\|Sorbitol-dehydrogenase	unknown	unknown	gnl\|CDD\|176198

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE67962.1\|252198_252939_+\|Autolysis-response-regulater-LytR	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	1.56134e-152
LS483311.1\|SQE67947.1\|233654_233933_+\|PTS-system-galactitol-specific-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.43648e-34
LS483311.1\|SQE67963.1\|253057_253495_+\|holin-like-protein	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	2.74631e-64
LS483311.1\|SQE67955.1\|242735_243905_+\|CDP-glycerol:poly(Glycerophosphate)-glycerophosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	1.25735e-161
LS483311.1\|SQE67946.1\|233164_233632_+\|PTS-system,-galactitol-specific-IIA-component	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.75683e-37
LS483311.1\|SQE67959.1\|247657_249379_+\|glycosyl-transferase	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	5.09942e-35
LS483311.1\|SQE67948.1\|234159_235419_+\|PTS-system,-galactitol-specific-IIC-component	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	0
LS483311.1\|SQE67961.1\|250441_252196_+\|Autolysis-histidine-kinase-LytS	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
LS483311.1\|SQE67958.1\|245936_247625_+\|Putative-polyribitolphosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	2.02592e-118
LS483311.1\|SQE67957.1\|244889_245915_+\|ribitol-5-phosphate-2-dehydrogenase	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	0
LS483311.1\|SQE67949.1\|235436_236492_+\|sorbitol-dehydrogenase	gnl\|CDD\|176219	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.42275e-146
LS483311.1\|SQE67960.1\|249522_250197_+\|DnrN	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	3.56125e-153
LS483311.1\|SQE67953.1\|238943_239969_+\|ribitol-5-phosphate-2-dehydrogenase	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	2.87903e-180
LS483311.1\|SQE67964.1\|253487_254189_+\|LrgA-associated-membrane-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
LS483311.1\|SQE67956.1\|244180_244897_+\|ribitol-5-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	2.28851e-105
LS483311.1\|SQE67954.1\|239990_241685_+\|Putative-polyribitolphosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	2.76945e-115
LS483311.1\|SQE67952.1\|238234_238951_+\|D-ribitol-5-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	3.11452e-126
LS483311.1\|SQE67945.1\|231083_233180_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.64004e-84
LS483311.1\|SQE67951.1\|236663_237707_+\|Sorbitol-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	2.26749e-178

>LS483311.1|SQE67954.1|239990_241685_+|Putative-polyribitolphosphotransferase
MTKTKQAIHIDNIYWERVQLYIEGHSEGVDLTSGQFVLRNLTETKTLEANEMKIDGNTFLCRFNVAILDDGYYLPMDKYLFVYHDQLEYIGQLNPNIIDQAYAALNEEQIEEYNELTTQNGKANYVLANEAKVFRKGGVSQHTVYTITPEIASDVNEFVFDIEITLPQEKSGVIATSAHWLHKQGHKASFESRSFLFKAIFNITKLLHIKRSKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDYDIQTVFKANITDRRKWRDKFRLPYLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGVPRTDVLFDETYATQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNISREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEVEKVVPFLDKHFKYQDGRSSERLVKDLFRR
>LS483311.1|SQE67953.1|238943_239969_+|ribitol-5-phosphate-2-dehydrogenase
MINQVYQLVAPRQFDVTYNNVDIYGNHVIVRPLYLSICAADQRYYTGRRDENVLRKKLPMSLVHEAVGEVVFDSKGVFEKGTKVVMVPNTPTEKHDVIAENYLPSSYFRSSGYDGFMQDYVVMAHDRIVPLPDDIDLSTISYTELVSVSYHAIQRFERKSIPLKTSFGIWGDGNLGYITAILLRKLYPEAKIYVFGKTDYKLSHFSFVDDIFTVNQIPADLKIDHAFECVGGKGSQVALQQIVEHISPEGSIALLGVSELPVEVNTRLVLEKGLTLIGSSRSGSKDFEQVVDLYRKYPDIVEKLALLKGHEINVCTMQDIVQAFEMDLSTSWGKTVLKWTI
>LS483311.1|SQE67952.1|238234_238951_+|D-ribitol-5-phosphate-cytidylyltransferase
MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGGTDRNETIMNIIDYIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAEKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDSYRALSSAQKEILSDACKIIVESGHPVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
>LS483311.1|SQE67951.1|236663_237707_+|Sorbitol-dehydrogenase
MKALKLYGVEDLRYEDNEKPVIESVNDVIVKVRATGICGSDTSRYKKMGPYIKGMPFGHEFSGVVDAIGSDVTHVNVGDKVTGCPAIPCYQCEYCLKGEYARCEKLFVIGSYEPGSFAEYVKLPAQNVLKVPDNVDYIEAAMVEPSAVVAHGFYKSNIQPGMTVAVMGCGSIGLLAIQWARIFGAAHIIAIDIDAHKLDIATSLGAHQTINSKEENLEKFIENHYANQIDLAIESSGAKVTIGQILTLPKKGGEVVLLGIPYDDIEIDRVHFEKILRNELTVCGSWNCLSSNFPGKEWTATLHYMKTKDINVKPIISHFLPLEKGPETFDKLVNKKERFDKVMFTIY
>LS483311.1|SQE67950.1|236493_236640_+|Uncharacterised-protein
MVESMLTFMLGPLRQITDFYMEHLLVSNSIVIAGYFATGIFKKKKVVN
>LS483311.1|SQE67949.1|235436_236492_+|sorbitol-dehydrogenase
MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIHTYEGHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCESKDYNLCNHRKGIGTQVDGAFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAHHGVSKIQVNSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQTDLKTYINGITDGYGADVVVECSGAVPAARQGLDILRKKGYYSQIGIFKDAEIPFDMEKVIQKEITVVGSRSQKPADWEPSLQLMADGLVNAEALVTKIYDISKWDEAYQHLKSGEGIKALLKPLDLDENEGEN
>LS483311.1|SQE67948.1|234159_235419_+|PTS-system,-galactitol-specific-IIC-component
MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLVKNLGPAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKTMNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQVICLKVADWTAPMMSEFFDLPGVSIATGSTISYAPGIYLVKLLQKVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLAGYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAVALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIVGTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
>LS483311.1|SQE67947.1|233654_233933_+|PTS-system-galactitol-specific-transporter-subunit-IIB
MKQVLVACGAGIATSTVVNNAIEEMAKEHNIKVDIKQIKITEVGPYEDTADLLVTTAMTKKEYKFPVINARNFLTGIGIEETKQQILTELQK
>LS483311.1|SQE67946.1|233164_233632_+|PTS-system,-galactitol-specific-IIA-component
MGQQLVHKENIMLNLSATDKESVLSQMSEVLFQNGFVKSTFKDAVIDREKEFATGLPTHLCSVAIPHTDVEHINHRTIGVAVLEKEVPFIEMGTLDQQTEVKIVFMLAMDKVDDQLKLLQQLMQIFQSEEKLEQILRTKDETILATLINDYLEYN
>LS483311.1|SQE67945.1|231083_233180_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MNGDNQQILREIVLNPTIHGKELESIFGLSRRQLGYRIQKINLWLEQEGYPKLERTSQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFSIETRRYYLMLMLFSKENAMSLNHFSIDLQVSKNTVIHDINHVKEQLENHGLSLKYSRKHGYEIVGDEFEVRRFFIKLIDQRLNHDITKSEVLKALNLTFEDIAYQKDKIKQVEQFLKSRFIDKSLSSLPYVLCVIRRRIQSGHVMNPLNINYQYLRDTKEYQATEIMTQHEPDLPEAEKLYLTLHLLSTSVQWTDLQESDSISNLTMAIAQMIHHFEQITFINIEDKEKLSQQLLLHLTPAFYRIKYNLTDRDELINPLQGNYQSLFHMVKQSCQSLTEYFGKSLPDNEIAYLTMLFGGSLRRQDENFDGKIKAIIVCTQGTSVSQMMLYELRNLFPEIIFLDAISLRTFENYTLDYDIVFSPMFVLTHKKLFITKVALSENEQRKLRKEVMKYINKESADIDKEINKLMALIERTTTVNDITELRDGLEDFIANYNSISTINGSIVTQNKTLDLADLIPARHVKRMHHVENIVEAIAKASDVLVANHFIDIKYIHEMQQVFDDSYMVIMQNIAIPHAYSEKHVHKTAMSMLILQEPIYMSDGTAIHIIVPIAAVDKVTHLRALLQLRDVAQDNDAIKRIIQSRKNSDVNEILKNYSNKEARENGWDSN
>LS483311.1|SQE67955.1|242735_243905_+|CDP-glycerol:poly(Glycerophosphate)-glycerophosphotransferase
MIKTTIKKLIEHSIYTTFKLLSKLPNKNLIYFESFHGKQYSDNPKALYEYLTEHSDAQLIWGVKKGYEHIFQQHNVPYVTKFSMKWFLAMPRAKAWMINTRTPDWLYKSPRTTYLQTWHGTPLKKIGLDISNVKMLGTNTQNYQDGFKKESQRWDYLVSPNPYSTSIFQHAFHVSRDKILETGYPRNDKLSHKRNDTEYINGIKTRLNIPLDKKVIMYAPTWRDDEAIREGSYQFNVNFDIEALRQALDDDYVILLRMHYLVVTRIDEHDDFVKDVSDYEDISDLYLISDALVTDYSSVMFDFGVLKRPQIFYAYDLDKYGDELRGFYMDYKKELPGPIVENQTALIDALKQIDETTNEYIEARTVFYQKFCSLEDGHASQRICQTIFK
>LS483311.1|SQE67956.1|244180_244897_+|ribitol-5-phosphate-cytidylyltransferase
MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTHTKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHRIIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKESYAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
>LS483311.1|SQE67957.1|244889_245915_+|ribitol-5-phosphate-2-dehydrogenase
MINQVYQLVAPRQFEVTYNNVDIYSDYVIVRPLYMSICAADQRYYTGSRDENVLSQKLPMSLIHEGVGEVVFDSKGVFNKGTKVVMVPNTPTEKDDVIAENYLKSSYFRSSGHDGFMQDFVLLNHDRAVPLPDDIDLSIISYTELVTVSLHAIRRFEKKSISNKNTFGIWGDGNLGYITAILLRKLYPESKIYVFGKTDYKLSHFSFVDDVFFINKIPEGLTFDHAFECVGGRGSQSAINQMIDYISPEGSIALLGVSEFPVEVNTRLVLEKGLTLIGSSRSGSKDFQDVVDLYIQYPDIVDKLALLKGQEFEIATINDLTEAFEADLSTSWGKTVLKWIM
>LS483311.1|SQE67958.1|245936_247625_+|Putative-polyribitolphosphotransferase
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDILFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>LS483311.1|SQE67959.1|247657_249379_+|glycosyl-transferase
MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISMKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>LS483311.1|SQE67960.1|249522_250197_+|DnrN
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>LS483311.1|SQE67961.1|250441_252196_+|Autolysis-histidine-kinase-LytS
MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>LS483311.1|SQE67962.1|252198_252939_+|Autolysis-response-regulater-LytR
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>LS483311.1|SQE67963.1|253057_253495_+|holin-like-protein
MKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>LS483311.1|SQE67964.1|253487_254189_+|LrgA-associated-membrane-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF

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Crispr_ID: LS483311_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_3

794387-794469

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483311_3

>merge|LS483311|3|794387-794469|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LS483311|3|3|794387-794469|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE68488.1\|793695_794238_+\|5'-3'-deoxyribonucleotidase,-putative	unknown	unknown	gnl\|CDD\|226895
LS483311.1\|SQE68491.1\|797950_798451_-\|NADPH-dependent-preQ0-reductase	unknown	unknown	gnl\|CDD\|223851
LS483311.1\|SQE68485.1\|789618_790596_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	unknown	unknown	gnl\|CDD\|224050
LS483311.1\|SQE68490.1\|796104_797610_-\|Di/tripeptide-permease-YjdL	unknown	unknown	gnl\|CDD\|225646
LS483311.1\|SQE68481.1\|782031_783036_+\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
LS483311.1\|SQE68498.1\|806197_806959_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
LS483311.1\|SQE68483.1\|785726_787604_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|223562
LS483311.1\|SQE68496.1\|804244_805258_+\|FatD	unknown	unknown	gnl\|CDD\|226965
LS483311.1\|SQE68480.1\|781337_782048_+\|Urea-amidolyase	unknown	unknown	gnl\|CDD\|224960
LS483311.1\|SQE68495.1\|802721_803693_+\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
LS483311.1\|SQE68493.1\|800137_800536_+\|Nrdi	unknown	unknown	gnl\|CDD\|224694
LS483311.1\|SQE68489.1\|794917_795835_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|224513
LS483311.1\|SQE68482.1\|783509_785450_+\|glycerol-phosphate-lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
LS483311.1\|SQE68479.1\|780369_780978_+\|Aminodeoxychorismate-lyase-PabAc	unknown	unknown	gnl\|CDD\|376449
LS483311.1\|SQE68487.1\|792342_793401_+\|histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|235106
LS483311.1\|SQE68486.1\|790588_792103_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	unknown	unknown	gnl\|CDD\|270328
LS483311.1\|SQE68484.1\|787615_789397_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
LS483311.1\|SQE68492.1\|798470_799337_-\|Integral-membrane-domain-protein	unknown	unknown	gnl\|CDD\|223769
LS483311.1\|SQE68497.1\|805244_806201_+\|Iron-compound-ABC-uptake-transporter-permease-protein	unknown	unknown	gnl\|CDD\|226964
LS483311.1\|SQE68494.1\|800498_802604_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE68488.1\|793695_794238_+\|5'-3'-deoxyribonucleotidase,-putative	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107
LS483311.1\|SQE68491.1\|797950_798451_-\|NADPH-dependent-preQ0-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
LS483311.1\|SQE68485.1\|789618_790596_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
LS483311.1\|SQE68490.1\|796104_797610_-\|Di/tripeptide-permease-YjdL	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
LS483311.1\|SQE68481.1\|782031_783036_+\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
LS483311.1\|SQE68498.1\|806197_806959_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.31412e-150
LS483311.1\|SQE68483.1\|785726_787604_+\|ABC-transporter	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
LS483311.1\|SQE68496.1\|804244_805258_+\|FatD	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.27667e-149
LS483311.1\|SQE68480.1\|781337_782048_+\|Urea-amidolyase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
LS483311.1\|SQE68495.1\|802721_803693_+\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
LS483311.1\|SQE68493.1\|800137_800536_+\|Nrdi	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
LS483311.1\|SQE68489.1\|794917_795835_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78
LS483311.1\|SQE68482.1\|783509_785450_+\|glycerol-phosphate-lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
LS483311.1\|SQE68479.1\|780369_780978_+\|Aminodeoxychorismate-lyase-PabAc	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	5.60043e-39
LS483311.1\|SQE68487.1\|792342_793401_+\|histidinol-phosphate-aminotransferase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
LS483311.1\|SQE68486.1\|790588_792103_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
LS483311.1\|SQE68484.1\|787615_789397_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
LS483311.1\|SQE68492.1\|798470_799337_-\|Integral-membrane-domain-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.88244e-10
LS483311.1\|SQE68497.1\|805244_806201_+\|Iron-compound-ABC-uptake-transporter-permease-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
LS483311.1\|SQE68494.1\|800498_802604_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0

>LS483311.1|SQE68488.1|793695_794238_+|5'-3'-deoxyribonucleotidase,-putative
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>LS483311.1|SQE68487.1|792342_793401_+|histidinol-phosphate-aminotransferase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>LS483311.1|SQE68486.1|790588_792103_+|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>LS483311.1|SQE68485.1|789618_790596_+|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>LS483311.1|SQE68484.1|787615_789397_+|ATP-dependent-DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>LS483311.1|SQE68483.1|785726_787604_+|ABC-transporter
MEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEHLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>LS483311.1|SQE68482.1|783509_785450_+|glycerol-phosphate-lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>LS483311.1|SQE68481.1|782031_783036_+|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>LS483311.1|SQE68480.1|781337_782048_+|Urea-amidolyase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>LS483311.1|SQE68479.1|780369_780978_+|Aminodeoxychorismate-lyase-PabAc
MQLFETMKIDNGHIPRLTYHTNRIKCSSERLNFKFDEHAWRNELNDVTTKYHSGQYRLKIVLNAESKFETIVSPLPEKSSFTAKFQVLPKVVNPTFIKNKTTERKHLAHNHETDLILLTSEDGKVLEFDIGNIVIEEDGKWYTPSYKDDFLKGCMRDYLIDSDKLVEKDFNKNELIYKYHNNEIRLFLINSLREVADVHLCL
>LS483311.1|SQE68489.1|794917_795835_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>LS483311.1|SQE68490.1|796104_797610_-|Di/tripeptide-permease-YjdL
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>LS483311.1|SQE68491.1|797950_798451_-|NADPH-dependent-preQ0-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>LS483311.1|SQE68492.1|798470_799337_-|Integral-membrane-domain-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFYIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>LS483311.1|SQE68493.1|800137_800536_+|Nrdi
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>LS483311.1|SQE68494.1|800498_802604_+|ribonucleotide-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>LS483311.1|SQE68495.1|802721_803693_+|ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>LS483311.1|SQE68496.1|804244_805258_+|FatD
MIMIIINLKGEKFVMKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>LS483311.1|SQE68497.1|805244_806201_+|Iron-compound-ABC-uptake-transporter-permease-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>LS483311.1|SQE68498.1|806197_806959_+|Iron-compound-ABC-uptake-transporter-ATP-binding-protein
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: LS483311_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_4

1090937-1091019

Orphan

Consensus_repeat	Method
TGTTGGGGCCCATCCCCCAACTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483311_4

>merge|LS483311|4|1090937-1091019|CRISPRCasFinder
TGTTGGGGCCCATCCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCATCCCCAACTTGCA

>LS483311|4|4|1090937-1091019|CRISPRCasFinder
TGTTGGGGCCCATCCCCCAACTTGCA	TTGCCTGTAGAATTTCTTTTCGAAATTCTCT
GTGTTGGGGCCCATCCCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE68791.1\|1090224_1090542_-\|Chitinase-B	unknown	unknown	gnl\|CDD\|374521
LS483311.1\|SQE68801.1\|1100434_1101001_+\|Phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
LS483311.1\|SQE68785.1\|1082285_1083503_-\|cell-envelope-related-function-transcriptional-attenuator-common-domain-containing-protein	unknown	unknown	gnl\|CDD\|224235
LS483311.1\|SQE68793.1\|1092528_1093011_+\|AIR-carboxylase	unknown	unknown	gnl\|CDD\|223119
LS483311.1\|SQE68797.1\|1095094_1095766_+\|Phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235140
LS483311.1\|SQE68788.1\|1085970_1086576_-\|quinol-oxidase-polypeptide-III-QoxC	unknown	unknown	gnl\|CDD\|131943
LS483311.1\|SQE68799.1\|1097926_1099411_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
LS483311.1\|SQE68782.1\|1077180_1080951_-\|autolysin	unknown	unknown	gnl\|CDD\|226656
LS483311.1\|SQE68786.1\|1083953_1085147_+\|FmtA-protein-involved-in-methicillin-resistance;-affects-cell-wall-cross-linking-and-amidation	unknown	unknown	gnl\|CDD\|365903
LS483311.1\|SQE68783.1\|1081178_1081613_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|225064
LS483311.1\|SQE68784.1\|1081767_1082238_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|287742
LS483311.1\|SQE68790.1\|1088553_1089654_-\|quinol-oxidase-polypeptide-II-QoxA	unknown	unknown	gnl\|CDD\|273621
LS483311.1\|SQE68796.1\|1094829_1095093_+\|Phosphoribosylformylglycinamidine-synthase,-PurS-subunit	unknown	unknown	gnl\|CDD\|224741
LS483311.1\|SQE68795.1\|1094125_1094830_+\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
LS483311.1\|SQE68792.1\|1091467_1092328_-\|Methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|184552
LS483311.1\|SQE68800.1\|1099403_1100432_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LS483311.1\|SQE68789.1\|1086565_1088554_-\|quinol-oxidase-polypeptide-I-QoxB	unknown	unknown	gnl\|CDD\|131928
LS483311.1\|SQE68798.1\|1095758_1097948_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	unknown	unknown	gnl\|CDD\|234921
LS483311.1\|SQE68787.1\|1085683_1085974_-\|quinol-oxidase-polypeptide-IV-QoxD	unknown	unknown	gnl\|CDD\|225667
LS483311.1\|SQE68794.1\|1092997_1094122_+\|Phosphoribosylaminoimidazole-carboxylase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235674

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE68791.1\|1090224_1090542_-\|Chitinase-B	gnl\|CDD\|374521	pfam16403, DUF5011, Domain of unknown function (DUF5011). This small family of proteins is functionally uncharacterized. This family is found in Bacteroides, Prevotella, and Parabateroides. Proteins in this family are around 230 amino acids in length.	1.27284e-18
LS483311.1\|SQE68801.1\|1100434_1101001_+\|Phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	1.14152e-91
LS483311.1\|SQE68785.1\|1082285_1083503_-\|cell-envelope-related-function-transcriptional-attenuator-common-domain-containing-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	4.20248e-79
LS483311.1\|SQE68793.1\|1092528_1093011_+\|AIR-carboxylase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	6.14005e-86
LS483311.1\|SQE68797.1\|1095094_1095766_+\|Phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	7.86572e-140
LS483311.1\|SQE68788.1\|1085970_1086576_-\|quinol-oxidase-polypeptide-III-QoxC	gnl\|CDD\|131943	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	2.41545e-111
LS483311.1\|SQE68799.1\|1097926_1099411_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
LS483311.1\|SQE68782.1\|1077180_1080951_-\|autolysin	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	2.37599e-84
LS483311.1\|SQE68786.1\|1083953_1085147_+\|FmtA-protein-involved-in-methicillin-resistance;-affects-cell-wall-cross-linking-and-amidation	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.32794e-60
LS483311.1\|SQE68783.1\|1081178_1081613_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	8.52255e-24
LS483311.1\|SQE68784.1\|1081767_1082238_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	4.64019e-106
LS483311.1\|SQE68790.1\|1088553_1089654_-\|quinol-oxidase-polypeptide-II-QoxA	gnl\|CDD\|273621	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b). [Energy metabolism, Electron transport].	7.48398e-146
LS483311.1\|SQE68796.1\|1094829_1095093_+\|Phosphoribosylformylglycinamidine-synthase,-PurS-subunit	gnl\|CDD\|224741	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism].	2.71239e-30
LS483311.1\|SQE68795.1\|1094125_1094830_+\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	2.31998e-136
LS483311.1\|SQE68792.1\|1091467_1092328_-\|Methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|184552	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
LS483311.1\|SQE68800.1\|1099403_1100432_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LS483311.1\|SQE68789.1\|1086565_1088554_-\|quinol-oxidase-polypeptide-I-QoxB	gnl\|CDD\|131928	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	0
LS483311.1\|SQE68798.1\|1095758_1097948_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
LS483311.1\|SQE68787.1\|1085683_1085974_-\|quinol-oxidase-polypeptide-IV-QoxD	gnl\|CDD\|225667	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].	1.35708e-26
LS483311.1\|SQE68794.1\|1092997_1094122_+\|Phosphoribosylaminoimidazole-carboxylase-ATPase-subunit	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0

>LS483311.1|SQE68791.1|1090224_1090542_-|Chitinase-B
MNKLLQSLSALGVSATLVTPNLNADATTNTTPQIKGANDIVIKKGQDYNLLNGISAFDKEDGDLTDKIKVDGQIDTSKSGKYQIKYHVTDSDGAIKISTRYIEVK
>LS483311.1|SQE68790.1|1088553_1089654_-|quinol-oxidase-polypeptide-II-QoxA
MSKFKSLLLLFGTLILLSGCSNIEIFNAKGPVASSQKFLILYSIVFMLVICFVVLGMFAIFIYKYSYNKNAESGKMHHNAIIETIWFVIPIIIVAALAIPTVKTLYDYEKPPKSEKDPMVVYAVSAGYKWFFAYPDEHIETVNTLTIPKDRPVVFKLQAMDTMTSFWIPQLGGQKYAMTGMTMNWTLEASQTGTFRGRNSNFNGEGFSRQTFKVNAVSQKDYDKWVKEVKGKKTLDQDTFDKQLLPSTPNKALEFNGTHMAFVDPAADPEYIFYAYKRFNFELKDPNFTSEENMFKDVSDKPLIPARKAQITNANYKRHGMKLMILGNDEPYNNEFKKDESKNAKEMKKISKDAQDQDNDDHGGGH
>LS483311.1|SQE68789.1|1086565_1088554_-|quinol-oxidase-polypeptide-I-QoxB
MNFPWDQLLVKGNWMITMAQIGAPFLVIGLIAVITYFKLWKYLYKEWFTSVDHKKIGIMYLICAVLMFVRGGIDALLIRAQLTVPDNKFLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVVPLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAGEFSPGPGVNYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLTVALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFARKRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWLLTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTGVVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRLYTYMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPREATGDNWDGLGRTLEWTTASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTIGGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEARLREARIKEREAVSHES
>LS483311.1|SQE68788.1|1085970_1086576_-|quinol-oxidase-polypeptide-III-QoxC
MSHDTNTIDSRTHEGELNKLGFWIFITAEFALFGTLFATLLTLQHGGDYAGKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQEKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSLGIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIGMVYSG
>LS483311.1|SQE68787.1|1085683_1085974_-|quinol-oxidase-polypeptide-IV-QoxD
MSTIMKHTVGFIASIVLTLLAVYVTLYTSLTFHAKLTIIFGFAFVQAGLQLLMFMHLTEGKDGRLQTFKVIFALVITLCFVVGTYWVMQGGHSSHL
>LS483311.1|SQE68786.1|1083953_1085147_+|FmtA-protein-involved-in-methicillin-resistance;-affects-cell-wall-cross-linking-and-amidation
MKFNKVKLVIHACVLLFIIISIALIFHRLQTKTHSIDPIHKETKLSDNEKYLVDRNKEKVAPSKLKEVYNSKDPKYKKIDKYLQSSLFNGSVAIYENGKLKMSKGYGYQDFEKGIKNTPNTMFLIGSAQKFSTGLLLKQLEEEHKININDPVSKYLPWFKTSKPIPLKDLMLHQSGLYKYKSSKDYKNLDQAVKAIQKRGIDPKKYKKHMYNDGNYLVLAKVIEEVTGKSYAENYYTKIGDPLKLQHTAFYDEQPFKKYLAKGYAYNSTGLSFLRPNILDQYYGAGNLYMTPTDMGKLITQIQQYKLFSPKITNPLLHEFGTKQYPDEYRYGFYAKPTLNRLNGGFFGQVFTVYYNDKYVVVLALNVKGNNEVRIKHIYNDILKQNKPYNTKGVIVQ
>LS483311.1|SQE68785.1|1082285_1083503_-|cell-envelope-related-function-transcriptional-attenuator-common-domain-containing-protein
MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNANRQSNLRDNKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLRKDLELSPINDKNDFLDQRVINHYGSLIPLTPLDNSLLRKEQNDTTDKDKTSNENSDSTNNSDSSNQQQPATDQNSNQNQGGTQQAPQASNNQNGVVN
>LS483311.1|SQE68784.1|1081767_1082238_-|LytR-family-transcriptional-regulator
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
>LS483311.1|SQE68783.1|1081178_1081613_-|Acetyltransferase,-GNAT-family
MFSKVNNQKMLEDCFYIRKKVFVEEQGVPEESEIDEYESESIHLIGYDNGQPVATARIRPINETTVKIERVAVMKSHRGQGMGRMLMQAVESLAKDEGFYVATMNAQCHAIPFYESLNFKMRGNIFLEEGIEHIEMTKKLTSLN
>LS483311.1|SQE68782.1|1077180_1080951_-|autolysin
MAKKFNYKLPSMVALTLVGSAVTAHQVQAAETTQDQTTNKNVLDSNKVKATTEQAKAEVKNPTQNISGTQVYQDPAIVQPKTANNKTGNAQVSQKVDTAQVNGDTRANQSATTNNTQPVAKSTSTTAPKTNTNVTNAGYSLVDDEDDNSENQINPELIKSAAKPAALETQYKTAAPKAATTSAPKAKTEATPKVTTFSASAQPRSVAATPKTSLPKYKPQVNSSINDYIRKNNLKAPKIEEDYTSYFPKYAYRNGVGRPEGIVVHDTANDRSTINGEISYMKNNYQNAFVHAFVDGDRIIETAPTDYLSWGVGAVGNPRFINVEIVHTHDYASFARSMNNYADYAATQLQYYGLKPDSAEYDGNGTVWTHYAVSKYLGGTDHADPHGYLRSHNYSYDQLYDLINEKYLIKMGKVAPWGTQSTTTPTTPSKPTTPSKPSTGKLTVAANNGVAQIKPTNSGLYTTVYDKTGKATNEVQKTFAVSKTATLGNQKFYLVQDYNSGNKFGWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGNQTFKASKQQQIDKSIYLYGSVNGKSGWVSKAYLVDTAKPTPTPTPKPSTPTTNNKLTVSSLNGVAQINAKNNGLFTTVYDKTGKPTKEVQKTFAVTKEASLGGNKFYLVKDYNSPTLIGWVKQGDVIYNNAKSPVNVMQTYTVKPGTKLYSVPWGTYKQEAGAVSGTGNQTFKATKQQQIDKSIYLFGTVNGKSGWVSKAYLAVPAAPKKAVAQPKTAVKAYAVTKPQTTQTVSKIAQVKPNNTGIRASVYEKTAKNGAKYADRTFYVTKERAHGNETYVLLNNTSHNIPLGWFNVKDLNVQNLGKEVKTTQKYTVNKSNNGLSMVPWGTKNQVILTGNNIAQGTFNATKQVSVGKDVYLYGTINNRTGWVNAKDLTAPTAVKPTTSAAKDYNYTYVIKNGNGYYYVTPNSDTAKYSLKAFNEQPFAVVKEQVINGQTWYYGKLSNGKLAWIKSTDLAKELIKYNQTGMTLNQVAQIQAGLQYKPQVQRVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISIDKINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNGTSQLAKGADVVNNKVVTNSNTKYHNVFGIAAYDNDPLREGIKYAKQAGWDTVSKAIVGGAKFIGNSYVKAGQNTLYKMRWNPAHPGTHQYATDVDWANINAKIIKGYYDKIGEVGKYFDIPQYK
>LS483311.1|SQE68792.1|1091467_1092328_-|Methenyltetrahydrofolate-cyclohydrolase
MVAKILDGKQIAKDYRQGLQDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENGKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGIDS
>LS483311.1|SQE68793.1|1092528_1093011_+|AIR-carboxylase
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
>LS483311.1|SQE68794.1|1092997_1094122_+|Phosphoribosylaminoimidazole-carboxylase-ATPase-subunit
MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSGRKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN
>LS483311.1|SQE68795.1|1094125_1094830_+|Phosphoribosylaminoimidazole-succinocarboxamide-synthase
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
>LS483311.1|SQE68796.1|1094829_1095093_+|Phosphoribosylformylglycinamidine-synthase,-PurS-subunit
MKTIELHITLQPQVLDTQGQTLTRAVHDLGYAQVNDIRVGKVLYMTVDEVSDEKVHNIITTLSEKLFANTVIEEYSYKVLDDEKENA
>LS483311.1|SQE68797.1|1095094_1095766_+|Phosphoribosylformylglycinamidine-synthase
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLATEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>LS483311.1|SQE68798.1|1095758_1097948_+|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGNEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>LS483311.1|SQE68799.1|1097926_1099411_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>LS483311.1|SQE68800.1|1099403_1100432_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDASRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>LS483311.1|SQE68801.1|1100434_1101001_+|Phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNKDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK

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Crispr_ID: LS483311_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_5

1698383-1698470

Orphan

Consensus_repeat	Method
CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483311_5

>merge|LS483311|5|1698383-1698470|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCA

>LS483311|5|5|1698383-1698470|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCCCA	CCCCAACTTGCACATTATAGTAAGCTGA
CTTTTCGTCAGCTTCTGTGTTGGGGCCCCA

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE69345.1\|1695842_1696820_-\|Heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
LS483311.1\|SQE69351.1\|1704309_1704741_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
LS483311.1\|SQE69349.1\|1701072_1702047_-\|DNA-polymerase-III-delta-subunit	unknown	unknown	gnl\|CDD\|235511
LS483311.1\|SQE69346.1\|1696920_1698078_-\|Oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LS483311.1\|SQE69350.1\|1702103_1704305_-\|competence-protein-ComEC	unknown	unknown	gnl\|CDD\|225212
LS483311.1\|SQE69348.1\|1700776_1701028_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
LS483311.1\|SQE69343.1\|1693283_1695116_-\|DnaK-protein	unknown	unknown	gnl\|CDD\|234715
LS483311.1\|SQE69344.1\|1695184_1695811_-\|Heat-shock-protein-GrpE	unknown	unknown	gnl\|CDD\|237622
LS483311.1\|SQE69339.1\|1688959_1690306_-\|MiaB-family-protein,-possibly-involved-in-tRNA-or-rRNA-modification	unknown	unknown	gnl\|CDD\|223694
LS483311.1\|SQE69354.1\|1706307_1706661_-\|Iojap-related-protein	unknown	unknown	gnl\|CDD\|223870
LS483311.1\|SQE69338.1\|1688490_1688667_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
LS483311.1\|SQE69355.1\|1706661_1707246_-\|hydrolase	unknown	unknown	gnl\|CDD\|224627
LS483311.1\|SQE69340.1\|1690312_1691065_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|224303
LS483311.1\|SQE69347.1\|1698607_1700431_-\|Translation-elongation-factor-LepA	unknown	unknown	gnl\|CDD\|235462
LS483311.1\|SQE69352.1\|1704862_1705540_-\|ComE-operon-protein-1	unknown	unknown	gnl\|CDD\|224472
LS483311.1\|SQE69341.1\|1691066_1692005_-\|Ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
LS483311.1\|SQE69337.1\|1687563_1688271_-\|membrane-bound-serine-protease	unknown	unknown	gnl\|CDD\|223961
LS483311.1\|SQE69356.1\|1707235_1707805_-\|Nicotinate-nucleotide-adenylyltransferase;-bacterial-NadD-family	unknown	unknown	gnl\|CDD\|273101
LS483311.1\|SQE69353.1\|1705588_1706305_-\|Ubiquinone/menaquinone-biosynthesis-methyltransferase-UbiE/-COQ5	unknown	unknown	gnl\|CDD\|379312
LS483311.1\|SQE69342.1\|1692008_1693148_-\|Chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE69345.1\|1695842_1696820_-\|Heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
LS483311.1\|SQE69351.1\|1704309_1704741_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	5.88513e-94
LS483311.1\|SQE69349.1\|1701072_1702047_-\|DNA-polymerase-III-delta-subunit	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
LS483311.1\|SQE69346.1\|1696920_1698078_-\|Oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LS483311.1\|SQE69350.1\|1702103_1704305_-\|competence-protein-ComEC	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.27846e-90
LS483311.1\|SQE69348.1\|1700776_1701028_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
LS483311.1\|SQE69343.1\|1693283_1695116_-\|DnaK-protein	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
LS483311.1\|SQE69344.1\|1695184_1695811_-\|Heat-shock-protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
LS483311.1\|SQE69339.1\|1688959_1690306_-\|MiaB-family-protein,-possibly-involved-in-tRNA-or-rRNA-modification	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
LS483311.1\|SQE69354.1\|1706307_1706661_-\|Iojap-related-protein	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
LS483311.1\|SQE69338.1\|1688490_1688667_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
LS483311.1\|SQE69355.1\|1706661_1707246_-\|hydrolase	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	8.54529e-80
LS483311.1\|SQE69340.1\|1690312_1691065_-\|Putative-cytosolic-protein	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.46402e-91
LS483311.1\|SQE69347.1\|1698607_1700431_-\|Translation-elongation-factor-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LS483311.1\|SQE69352.1\|1704862_1705540_-\|ComE-operon-protein-1	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	1.95562e-32
LS483311.1\|SQE69341.1\|1691066_1692005_-\|Ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
LS483311.1\|SQE69337.1\|1687563_1688271_-\|membrane-bound-serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	7.08872e-65
LS483311.1\|SQE69356.1\|1707235_1707805_-\|Nicotinate-nucleotide-adenylyltransferase;-bacterial-NadD-family	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.98239e-76
LS483311.1\|SQE69353.1\|1705588_1706305_-\|Ubiquinone/menaquinone-biosynthesis-methyltransferase-UbiE/-COQ5	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00559e-15
LS483311.1\|SQE69342.1\|1692008_1693148_-\|Chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0

>LS483311.1|SQE69346.1|1696920_1698078_-|Oxygen-independent-coproporphyrinogen-III-oxidase
MDKQSEKRGIKMTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>LS483311.1|SQE69345.1|1695842_1696820_-|Heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>LS483311.1|SQE69344.1|1695184_1695811_-|Heat-shock-protein-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>LS483311.1|SQE69343.1|1693283_1695116_-|DnaK-protein
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>LS483311.1|SQE69342.1|1692008_1693148_-|Chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>LS483311.1|SQE69341.1|1691066_1692005_-|Ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>LS483311.1|SQE69340.1|1690312_1691065_-|Putative-cytosolic-protein
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>LS483311.1|SQE69339.1|1688959_1690306_-|MiaB-family-protein,-possibly-involved-in-tRNA-or-rRNA-modification
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>LS483311.1|SQE69338.1|1688490_1688667_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>LS483311.1|SQE69337.1|1687563_1688271_-|membrane-bound-serine-protease
MSYNNFLQMTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGIILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>LS483311.1|SQE69347.1|1698607_1700431_-|Translation-elongation-factor-LepA
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELMPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDIIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>LS483311.1|SQE69348.1|1700776_1701028_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>LS483311.1|SQE69349.1|1701072_1702047_-|DNA-polymerase-III-delta-subunit
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>LS483311.1|SQE69350.1|1702103_1704305_-|competence-protein-ComEC
MLYVALSMIVGVLWNSSKVLSTFLFILLLYIAYRKNKIVYAPTSLFLIIFSSWYLHYSQQAIFNYINYIERTSQFNERAQVIQIQRQDSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>LS483311.1|SQE69351.1|1704309_1704741_-|ComE-operon-protein-2
MAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>LS483311.1|SQE69352.1|1704862_1705540_-|ComE-operon-protein-1
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>LS483311.1|SQE69353.1|1705588_1706305_-|Ubiquinone/menaquinone-biosynthesis-methyltransferase-UbiE/-COQ5
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESKILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>LS483311.1|SQE69354.1|1706307_1706661_-|Iojap-related-protein
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>LS483311.1|SQE69355.1|1706661_1707246_-|hydrolase
MNIEKAKRLAKEKLPEKRYNHSLRVSETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>LS483311.1|SQE69356.1|1707235_1707805_-|Nicotinate-nucleotide-adenylyltransferase;-bacterial-NadD-family
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: LS483311_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_6

1818524-1818610

Orphan

Consensus_repeat	Method
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483311_6

>merge|LS483311|6|1818524-1818610|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGACCATGCAAGTTGGGGTGGGCCCCAACATAGAA

>LS483311|6|6|1818524-1818610|CRISPRCasFinder
ATGCAAGTTGGGGTGGGGCCCCAACATAGA	GAATTTCGAAAAGAAATTCTACAGACC
ATGCAAGTTGGGGTGGGCCCCAACATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE69458.1\|1821926_1822982_+\|Proline-dipeptidase	unknown	unknown	gnl\|CDD\|223085
LS483311.1\|SQE69463.1\|1827662_1828157_-\|Thioredoxin-peroxidase	unknown	unknown	gnl\|CDD\|179055
LS483311.1\|SQE69447.1\|1805928_1806756_-\|transposase-for-IS1272	unknown	unknown	gnl\|CDD\|226192
LS483311.1\|SQE69462.1\|1826592_1827540_-\|adenine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|223897
LS483311.1\|SQE69445.1\|1803710_1805072_+\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|224038
LS483311.1\|SQE69446.1\|1805104_1805911_-\|putative-transposase	unknown	unknown	gnl\|CDD\|226192
LS483311.1\|SQE69461.1\|1825302_1826505_-\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680
LS483311.1\|SQE69448.1\|1807396_1809154_-\|Pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
LS483311.1\|SQE69454.1\|1817305_1818247_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	unknown	unknown	gnl\|CDD\|223691
LS483311.1\|SQE69459.1\|1823297_1824416_-\|alanine-dehydrogenase-2	unknown	unknown	gnl\|CDD\|240630
LS483311.1\|SQE69452.1\|1812408_1813638_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
LS483311.1\|SQE69464.1\|1828254_1829025_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182593
LS483311.1\|SQE69453.1\|1814087_1817285_-\|DNA-polymerase-III-alpha-subunit	unknown	unknown	gnl\|CDD\|223660
LS483311.1\|SQE69456.1\|1820203_1820617_+\|transcription-factor	unknown	unknown	gnl\|CDD\|366180
LS483311.1\|SQE69455.1\|1818700_1819999_-\|Cytosolic-protein-containing-multiple-CBS-domains	unknown	unknown	gnl\|CDD\|226594
LS483311.1\|SQE69451.1\|1811356_1812214_-\|acetyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
LS483311.1\|SQE69450.1\|1810412_1811357_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	unknown	unknown	gnl\|CDD\|235580
LS483311.1\|SQE69460.1\|1824556_1825057_+\|universal-stress-protein-family	unknown	unknown	gnl\|CDD\|366180
LS483311.1\|SQE69449.1\|1809175_1810144_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LS483311.1\|SQE69457.1\|1821062_1821752_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE69458.1\|1821926_1822982_+\|Proline-dipeptidase	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	7.02579e-126
LS483311.1\|SQE69463.1\|1827662_1828157_-\|Thioredoxin-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	5.93419e-100
LS483311.1\|SQE69447.1\|1805928_1806756_-\|transposase-for-IS1272	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.36382e-40
LS483311.1\|SQE69462.1\|1826592_1827540_-\|adenine-specific-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.61849e-56
LS483311.1\|SQE69445.1\|1803710_1805072_+\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
LS483311.1\|SQE69446.1\|1805104_1805911_-\|putative-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.44542e-28
LS483311.1\|SQE69461.1\|1825302_1826505_-\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LS483311.1\|SQE69448.1\|1807396_1809154_-\|Pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
LS483311.1\|SQE69454.1\|1817305_1818247_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.36211e-98
LS483311.1\|SQE69459.1\|1823297_1824416_-\|alanine-dehydrogenase-2	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
LS483311.1\|SQE69452.1\|1812408_1813638_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
LS483311.1\|SQE69464.1\|1828254_1829025_-\|membrane-protein	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	4.45223e-38
LS483311.1\|SQE69453.1\|1814087_1817285_-\|DNA-polymerase-III-alpha-subunit	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
LS483311.1\|SQE69456.1\|1820203_1820617_+\|transcription-factor	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
LS483311.1\|SQE69455.1\|1818700_1819999_-\|Cytosolic-protein-containing-multiple-CBS-domains	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
LS483311.1\|SQE69451.1\|1811356_1812214_-\|acetyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
LS483311.1\|SQE69450.1\|1810412_1811357_-\|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
LS483311.1\|SQE69460.1\|1824556_1825057_+\|universal-stress-protein-family	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
LS483311.1\|SQE69449.1\|1809175_1810144_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LS483311.1\|SQE69457.1\|1821062_1821752_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.09103e-133

>LS483311.1|SQE69454.1|1817305_1818247_-|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDESIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>LS483311.1|SQE69453.1|1814087_1817285_-|DNA-polymerase-III-alpha-subunit
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLVKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDIYMDHLSISIQGRKHVWIQDVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQKGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVVLSFYDETIKQMTTLGYINQKDSMFNNFIQSLNPSDIRLI
>LS483311.1|SQE69452.1|1812408_1813638_-|NADP-dependent-malic-enzyme
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>LS483311.1|SQE69451.1|1811356_1812214_-|acetyl-CoA-carboxylase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>LS483311.1|SQE69450.1|1810412_1811357_-|Acetyl-coenzyme-A-carboxyl-transferase-alpha-chain
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>LS483311.1|SQE69449.1|1809175_1810144_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>LS483311.1|SQE69448.1|1807396_1809154_-|Pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>LS483311.1|SQE69447.1|1805928_1806756_-|transposase-for-IS1272
MYKIYNMTQLTLPIETSVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQDQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDNNSIFIDGTKVEANANRYTFVWKKSIQNHESKLNENSKTLYRDLVEEKIIPEIKEDGDSDLTIEEIDLIGSHLDKEIEDLNHSIENEDCAQIRKQTRKKITEIKKFKKKFDDYSERKNKYEEQKSILKDRNSFSKTDLIMMQLL
>LS483311.1|SQE69446.1|1805104_1805911_-|putative-transposase
MKNGQLKPGYNLQIATNSQFVLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSGIFNTQNWKYDELNNEFICPNNKRIGFKRYAYRNDRYGFKRDFKLYECDDCSSCSLRHQCMKPNSKSNKKIMKNYNWEYFKVQINQKLSEPETKNIYSQRKIDVEPAFGFMKAILGFTRMSVRGINKVKRELGFVLMALNIRKIAAQRAVHYKIHIKKADFYQIINRNQLFYIA
>LS483311.1|SQE69445.1|1803710_1805072_+|D-serine/D-alanine/glycine-transporter
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>LS483311.1|SQE69455.1|1818700_1819999_-|Cytosolic-protein-containing-multiple-CBS-domains
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>LS483311.1|SQE69456.1|1820203_1820617_+|transcription-factor
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>LS483311.1|SQE69457.1|1821062_1821752_-|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>LS483311.1|SQE69458.1|1821926_1822982_+|Proline-dipeptidase
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGNRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>LS483311.1|SQE69459.1|1823297_1824416_-|alanine-dehydrogenase-2
MKIGIPSEIKNNENRVGLSPSGVHALVESGHIVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKINGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>LS483311.1|SQE69460.1|1824556_1825057_+|universal-stress-protein-family
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>LS483311.1|SQE69461.1|1825302_1826505_-|Acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>LS483311.1|SQE69462.1|1826592_1827540_-|adenine-specific-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINALKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKVRKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>LS483311.1|SQE69463.1|1827662_1828157_-|Thioredoxin-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSEASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>LS483311.1|SQE69464.1|1828254_1829025_-|membrane-protein
MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLTSTIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFTFKKAILFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLIMATSMIAGSYTGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFV

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Crispr_ID: LS483311_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_7

2015794-2015883

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483311_7

>merge|LS483311|7|2015794-2015883|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAATTTCTTTT

>LS483311|7|7|2015794-2015883|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CGAAATTCTCTGTGTTGGGGCCCACA
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE69620.1\|2010041_2010317_+\|exported-protein	unknown	unknown	unknown
LS483311.1\|SQE69617.1\|2007964_2009212_-\|aminopeptidase-PepS	unknown	unknown	gnl\|CDD\|376723
LS483311.1\|SQE69624.1\|2013582_2014284_-\|Transporter-yvqF	unknown	unknown	gnl\|CDD\|227100
LS483311.1\|SQE69633.1\|2022093_2023164_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
LS483311.1\|SQE69635.1\|2024110_2025472_-\|RNA-methyltransferase,-TrmA-family	unknown	unknown	gnl\|CDD\|225174
LS483311.1\|SQE69627.1\|2016188_2017175_+\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LS483311.1\|SQE69629.1\|2018243_2018975_-\|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225974
LS483311.1\|SQE69636.1\|2025552_2026500_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|183982
LS483311.1\|SQE69625.1\|2014298_2014685_-\|putative-staphylococcal-protein	unknown	unknown	unknown
LS483311.1\|SQE69634.1\|2023410_2023941_-\|Permease	unknown	unknown	gnl\|CDD\|378690
LS483311.1\|SQE69630.1\|2018976_2020290_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|223840
LS483311.1\|SQE69626.1\|2014901_2015660_-\|Methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
LS483311.1\|SQE69628.1\|2017605_2018019_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483311.1\|SQE69631.1\|2020581_2021082_+\|Ferritin-like-protein-2	unknown	unknown	gnl\|CDD\|224445
LS483311.1\|SQE69618.1\|2009223_2009430_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|227177
LS483311.1\|SQE69621.1\|2010594_2011812_+\|ribonuclease-BN	unknown	unknown	gnl\|CDD\|224214
LS483311.1\|SQE69622.1\|2011923_2012553_-\|Two-component-transcriptional-regulator-VraR,-LuxR-family	unknown	unknown	gnl\|CDD\|225107
LS483311.1\|SQE69623.1\|2012542_2013586_-\|Sensor-histidine-kinase-VraS	unknown	unknown	gnl\|CDD\|226951
LS483311.1\|SQE69619.1\|2009570_2010035_+\|Low-molecular-weight-protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
LS483311.1\|SQE69632.1\|2021471_2022026_+\|DNA-polymerase-III-polC-type	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE69617.1\|2007964_2009212_-\|aminopeptidase-PepS	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
LS483311.1\|SQE69624.1\|2013582_2014284_-\|Transporter-yvqF	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
LS483311.1\|SQE69633.1\|2022093_2023164_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
LS483311.1\|SQE69635.1\|2024110_2025472_-\|RNA-methyltransferase,-TrmA-family	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
LS483311.1\|SQE69627.1\|2016188_2017175_+\|Integral-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
LS483311.1\|SQE69629.1\|2018243_2018975_-\|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.33663e-121
LS483311.1\|SQE69636.1\|2025552_2026500_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
LS483311.1\|SQE69632.1\|2021471_2022026_+\|DNA-polymerase-III-polC-type	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
LS483311.1\|SQE69634.1\|2023410_2023941_-\|Permease	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.92343e-11
LS483311.1\|SQE69630.1\|2018976_2020290_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.37755e-99
LS483311.1\|SQE69626.1\|2014901_2015660_-\|Methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
LS483311.1\|SQE69631.1\|2020581_2021082_+\|Ferritin-like-protein-2	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
LS483311.1\|SQE69618.1\|2009223_2009430_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.82008e-26
LS483311.1\|SQE69621.1\|2010594_2011812_+\|ribonuclease-BN	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.45634e-85
LS483311.1\|SQE69622.1\|2011923_2012553_-\|Two-component-transcriptional-regulator-VraR,-LuxR-family	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75115e-79
LS483311.1\|SQE69623.1\|2012542_2013586_-\|Sensor-histidine-kinase-VraS	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
LS483311.1\|SQE69619.1\|2009570_2010035_+\|Low-molecular-weight-protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65

>LS483311.1|SQE69626.1|2014901_2015660_-|Methionine-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>LS483311.1|SQE69625.1|2014298_2014685_-|putative-staphylococcal-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>LS483311.1|SQE69624.1|2013582_2014284_-|Transporter-yvqF
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>LS483311.1|SQE69623.1|2012542_2013586_-|Sensor-histidine-kinase-VraS
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>LS483311.1|SQE69622.1|2011923_2012553_-|Two-component-transcriptional-regulator-VraR,-LuxR-family
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>LS483311.1|SQE69621.1|2010594_2011812_+|ribonuclease-BN
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDNNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>LS483311.1|SQE69620.1|2010041_2010317_+|exported-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>LS483311.1|SQE69619.1|2009570_2010035_+|Low-molecular-weight-protein-tyrosine-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>LS483311.1|SQE69618.1|2009223_2009430_-|Uncharacterized-protein-conserved-in-bacteria
MAMTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>LS483311.1|SQE69617.1|2007964_2009212_-|aminopeptidase-PepS
MTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHELKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>LS483311.1|SQE69627.1|2016188_2017175_+|Integral-membrane-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>LS483311.1|SQE69628.1|2017605_2018019_-|Uncharacterised-protein
MKPTKVILRDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>LS483311.1|SQE69629.1|2018243_2018975_-|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>LS483311.1|SQE69630.1|2018976_2020290_-|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>LS483311.1|SQE69631.1|2020581_2021082_+|Ferritin-like-protein-2
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>LS483311.1|SQE69632.1|2021471_2022026_+|DNA-polymerase-III-polC-type
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>LS483311.1|SQE69633.1|2022093_2023164_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>LS483311.1|SQE69634.1|2023410_2023941_-|Permease
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLFLLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>LS483311.1|SQE69635.1|2024110_2025472_-|RNA-methyltransferase,-TrmA-family
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIQYAQLTGNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAHGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>LS483311.1|SQE69636.1|2025552_2026500_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MRKRARIIYNPTSGKELFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE

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Crispr_ID: LS483311_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483311_8

2252402-2252491

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of LS483311_8

>merge|LS483311|8|2252402-2252491|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCT

>LS483311|8|8|2252402-2252491|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
LS483311.1\|SQE69870.1\|2254426_2255284_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LS483311.1\|SQE69872.1\|2256365_2258171_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483311.1\|SQE69877.1\|2264427_2271924_-\|FmtB-protein	unknown	unknown	gnl\|CDD\|275089
LS483311.1\|SQE69860.1\|2242884_2243595_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
LS483311.1\|SQE69861.1\|2243715_2244159_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	unknown	unknown	gnl\|CDD\|223854
LS483311.1\|SQE69866.1\|2248908_2249574_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
LS483311.1\|SQE69876.1\|2263002_2264109_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LS483311.1\|SQE69862.1\|2244358_2244772_-\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|225556
LS483311.1\|SQE69864.1\|2247273_2247504_-\|membrane-protein	unknown	unknown	unknown
LS483311.1\|SQE69879.1\|2273582_2274515_-\|ybbR-like-family-protein	unknown	unknown	gnl\|CDD\|227193
LS483311.1\|SQE69863.1\|2245228_2246602_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
LS483311.1\|SQE69874.1\|2260424_2262557_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LS483311.1\|SQE69871.1\|2255351_2256134_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LS483311.1\|SQE69878.1\|2272200_2273556_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	unknown	unknown	gnl\|CDD\|237670
LS483311.1\|SQE69869.1\|2251293_2252385_+\|Lytic-regulatory-protein	unknown	unknown	unknown
LS483311.1\|SQE69867.1\|2249725_2250046_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LS483311.1\|SQE69865.1\|2247534_2248473_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LS483311.1\|SQE69868.1\|2250047_2251028_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151
LS483311.1\|SQE69873.1\|2258851_2260390_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LS483311.1\|SQE69875.1\|2262568_2263003_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014

Protein	Function_ID	Function_description	E-value
LS483311.1\|SQE69870.1\|2254426_2255284_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.00207e-59
LS483311.1\|SQE69872.1\|2256365_2258171_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483311.1\|SQE69860.1\|2242884_2243595_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
LS483311.1\|SQE69861.1\|2243715_2244159_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
LS483311.1\|SQE69866.1\|2248908_2249574_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
LS483311.1\|SQE69876.1\|2263002_2264109_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LS483311.1\|SQE69862.1\|2244358_2244772_-\|thiol-disulfide-oxidoreductase	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
LS483311.1\|SQE69879.1\|2273582_2274515_-\|ybbR-like-family-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.26423e-118
LS483311.1\|SQE69863.1\|2245228_2246602_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
LS483311.1\|SQE69874.1\|2260424_2262557_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.17174e-68
LS483311.1\|SQE69871.1\|2255351_2256134_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	8.27306e-106
LS483311.1\|SQE69878.1\|2272200_2273556_-\|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LS483311.1\|SQE69877.1\|2264427_2271924_-\|FmtB-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	4.25998e-109
LS483311.1\|SQE69867.1\|2249725_2250046_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
LS483311.1\|SQE69865.1\|2247534_2248473_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
LS483311.1\|SQE69868.1\|2250047_2251028_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.20197e-108
LS483311.1\|SQE69873.1\|2258851_2260390_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
LS483311.1\|SQE69875.1\|2262568_2263003_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62

>LS483311.1|SQE69869.1|2251293_2252385_+|Lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKETTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>LS483311.1|SQE69868.1|2250047_2251028_+|Cobalt-zinc-cadmium-resistance-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHAH
>LS483311.1|SQE69867.1|2249725_2250046_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>LS483311.1|SQE69866.1|2248908_2249574_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>LS483311.1|SQE69865.1|2247534_2248473_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>LS483311.1|SQE69864.1|2247273_2247504_-|membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>LS483311.1|SQE69863.1|2245228_2246602_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>LS483311.1|SQE69862.1|2244358_2244772_-|thiol-disulfide-oxidoreductase
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>LS483311.1|SQE69861.1|2243715_2244159_-|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>LS483311.1|SQE69860.1|2242884_2243595_+|Purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>LS483311.1|SQE69870.1|2254426_2255284_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>LS483311.1|SQE69871.1|2255351_2256134_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>LS483311.1|SQE69872.1|2256365_2258171_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>LS483311.1|SQE69873.1|2258851_2260390_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALLSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LS483311.1|SQE69874.1|2260424_2262557_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>LS483311.1|SQE69875.1|2262568_2263003_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>LS483311.1|SQE69876.1|2263002_2264109_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>LS483311.1|SQE69877.1|2264427_2271924_-|FmtB-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPAAQPAAPANQGQPAAQPAAQPANQGGQANPAGGAAQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAVQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEISKIENITDSTQTKMDAYNEVKQAATARKAQNATVSNATNEEVAEADAAVDAAQKQGLHDIQVVKSKQEVADTKSKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNAAANADVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDANNGSTTEEKEAAKQQVQTEKTAADAAIDAAHSNAEVEAAKNAEIAKIEAIQPATTTKDNAKEAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITTILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYLDILNAQTTNDVTQIKDQAVTDIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKENAIQAIDPIQASTDVKTNARAELLTEMQNKITEILSDNTTTNEEKGKDIEPVRATYEEGLNNINTANTTGDVTTAKDTAVQKVQQLHANPVKKPAGKTALDQAAADRKTQIEQTPNASQQEINDAKQEVDAALNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKETATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQTSVGPVANNKAKDMQTNDTQKSVGSAANNKATQNDGANASPATVSNGSNSANQDMLNVTKPEENKANAKSAQQGKVNKAKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>LS483311.1|SQE69878.1|2272200_2273556_-|Phosphoglucosamine-mutase-/-FemD,-factor-involved-in-methicillin-resistance
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>LS483311.1|SQE69879.1|2273582_2274515_-|ybbR-like-family-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQPSETKAYINVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	133717-133747	0	1.0
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	835474-835504	0	1.0
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	840908-840938	0	1.0
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	1428415-1428445	0	1.0
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	1516910-1516940	0	1.0
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	2017266-2017296	0	1.0
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	2359273-2359303	0	1.0
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	2562464-2562494	0	1.0
LS483311_7	7.1\|2015826\|26\|LS483311\|CRISPRCasFinder	2015826-2015851	26	LS483311.1	2017286-2017311	0	1.0
LS483311_7	7.1\|2015826\|26\|LS483311\|CRISPRCasFinder	2015826-2015851	26	LS483311.1	2562507-2562532	0	1.0
LS483311_1	1.1\|133762\|33\|LS483311\|CRISPRCasFinder	133762-133794	33	LS483311.1	1090916-1090948	1	0.97
LS483311_1	1.1\|133762\|33\|LS483311\|CRISPRCasFinder	133762-133794	33	LS483311.1	1428518-1428550	1	0.97
LS483311_1	1.1\|133762\|33\|LS483311\|CRISPRCasFinder	133762-133794	33	LS483311.1	1516805-1516837	1	0.97
LS483311_1	1.1\|133762\|33\|LS483311\|CRISPRCasFinder	133762-133794	33	LS483311.1	2562567-2562599	1	0.97
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	133711-133735	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	379900-379924	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	835486-835510	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	840920-840944	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1428409-1428433	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1516922-1516946	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	2017278-2017302	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	2359285-2359309	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	2562458-2562482	1	0.96
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	2562516-2562540	1	0.96
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	379906-379936	1	0.968
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	994956-994986	1	0.968
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	1730856-1730886	1	0.968
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	1731029-1731059	1	0.968
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	2562522-2562552	1	0.968
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	2643987-2644017	1	0.968
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	379808-379835	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	840840-840867	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	848163-848190	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	1091008-1091035	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	1191974-1192001	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	1275721-1275748	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	1428489-1428516	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	1516839-1516866	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	2015911-2015938	1	0.964
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	2026604-2026631	1	0.964
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	257476-257500	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	994968-994992	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1192010-1192034	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1192065-1192089	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1432843-1432867	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1730868-1730892	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1731041-1731065	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	1820819-1820843	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	2149468-2149492	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	2370133-2370157	2	0.92
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LS483311.1	2643999-2644023	2	0.92
LS483311_3	3.1\|794414\|29\|LS483311\|CRISPRCasFinder	794414-794442	29	LS483311.1	444349-444377	2	0.931
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	1192016-1192046	2	0.935
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	1192071-1192101	2	0.935
LS483311_4	4.1\|1090963\|31\|LS483311\|CRISPRCasFinder	1090963-1090993	31	LS483311.1	2370121-2370151	2	0.935
LS483311_5	5.1\|1698413\|28\|LS483311\|CRISPRCasFinder	1698413-1698440	28	LS483311.1	974760-974787	2	0.929

1. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 133717-133747, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

2. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 835474-835504, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

3. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 840908-840938, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

4. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 1428415-1428445, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

5. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 1516910-1516940, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

6. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 2017266-2017296, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

7. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 2359273-2359303, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

8. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 2562464-2562494, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

9. spacer 7.1|2015826|26|LS483311|CRISPRCasFinder matches to position: 2017286-2017311, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

10. spacer 7.1|2015826|26|LS483311|CRISPRCasFinder matches to position: 2562507-2562532, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

11. spacer 1.1|133762|33|LS483311|CRISPRCasFinder matches to position: 1090916-1090948, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagaggaattggatttccaat	Protospacer
***************************.*****

12. spacer 1.1|133762|33|LS483311|CRISPRCasFinder matches to position: 1428518-1428550, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*****************.***************

13. spacer 1.1|133762|33|LS483311|CRISPRCasFinder matches to position: 1516805-1516837, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*****************.***************

14. spacer 1.1|133762|33|LS483311|CRISPRCasFinder matches to position: 2562567-2562599, mismatch: 1, identity: 0.97

tgggccccaacaaagaggaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*****************.***************

15. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 133711-133735, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

16. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 379900-379924, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctatgttg	Protospacer
******************* *****

17. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 835486-835510, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

18. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 840920-840944, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

19. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1428409-1428433, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

20. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1516922-1516946, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

21. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 2017278-2017302, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

22. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 2359285-2359309, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

23. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 2562458-2562482, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

24. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 2562516-2562540, mismatch: 1, identity: 0.96

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctctgtgttg	Protospacer
******************* *****

25. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 379906-379936, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcttgtagaatttcttttcgaaattctct	Protospacer
****.**************************

26. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 994956-994986, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttagaaattctct	Protospacer
******************** **********

27. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 1730856-1730886, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

28. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 1731029-1731059, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

29. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 2562522-2562552, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

30. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 2643987-2644017, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcatttcgaaattctct	Protospacer
**************** **************

31. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 379808-379835, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

32. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 840840-840867, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattatcgtaagctga	Protospacer
****************** *********

33. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 848163-848190, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

34. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 1091008-1091035, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

35. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 1191974-1192001, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

36. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 1275721-1275748, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

37. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 1428489-1428516, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

38. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 1516839-1516866, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

39. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 2015911-2015938, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

40. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 2026604-2026631, mismatch: 1, identity: 0.964

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacattattgtaagctga	Protospacer
****************** *********

41. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 257476-257500, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctttgtgttg	Protospacer
*****************.* *****

42. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 994968-994992, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttagaaattctctgtgttg	Protospacer
******** ********** *****

43. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1192010-1192034, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctgtgttg	Protospacer
********.********** *****

44. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1192065-1192089, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

45. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1432843-1432867, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttatcgaaattctctgtgttg	Protospacer
****** ************ *****

46. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1730868-1730892, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctgtgttg	Protospacer
******* *********** *****

47. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1731041-1731065, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

48. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 1820819-1820843, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcttttcgaaattctccatgttg	Protospacer
******************. *****

49. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 2149468-2149492, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctctatgttg	Protospacer
******* *********** *****

50. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 2370133-2370157, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttttgaaattctctatgttg	Protospacer
********.********** *****

51. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to position: 2643999-2644023, mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttcatttcgaaattctctgtgttg	Protospacer
**** ************** *****

52. spacer 3.1|794414|29|LS483311|CRISPRCasFinder matches to position: 444349-444377, mismatch: 2, identity: 0.931

cggggccccaacatagagaaattggaacg	CRISPR spacer
cggggccccaacataaagaaattggtacg	Protospacer
***************.********* ***

53. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 1192016-1192046, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

54. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 1192071-1192101, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

55. spacer 4.1|1090963|31|LS483311|CRISPRCasFinder matches to position: 2370121-2370151, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

56. spacer 5.1|1698413|28|LS483311|CRISPRCasFinder matches to position: 974760-974787, mismatch: 2, identity: 0.929

ccccaacttgcacattatagtaagctga	CRISPR spacer
ccccaacttgcacactattgtaagctga	Protospacer
**************.*** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483311_2	2.1\|242257\|25\|LS483311\|CRISPRCasFinder	242257-242281	25	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15471	2	0.92
LS483311_6	6.1\|1818554\|27\|LS483311\|CRISPRCasFinder	1818554-1818580	27	KM359505	Prochlorococcus phage P-TIM68, complete genome	102710-102736	5	0.815
LS483311_9	9.1\|2264758\|34\|LS483311\|CRISPRCasFinder	2264758-2264791	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
LS483311_9	9.1\|2264758\|34\|LS483311\|CRISPRCasFinder	2264758-2264791	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 2.1|242257|25|LS483311|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 2, identity: 0.92

tttcttttcgaaattctctttgttg	CRISPR spacer
tttctttacgaaattctttttgttg	Protospacer
******* *********.*******

2. spacer 6.1|1818554|27|LS483311|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.815

gaatttcgaaaagaaattctacagacc	CRISPR spacer
ctatttccaaaagaaattatacagatc	Protospacer
  ***** ********** ******.*

3. spacer 9.1|2264758|34|LS483311|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

4. spacer 9.1|2264758|34|LS483311|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

313857 : 358468

Staphylococcus_phage(92.06%)

portal,protease,capsid,terminase,tail,head,integrase

attL 313747:313764|attR 359207:359224

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
313747:313764	attL	NA	NA	NA	NA
SQE68021.1\|313857_315063_-\|integrase	phage integrase family protein	A7YGM7	Staphylococcus_virus	6.5e-222	99.5
SQE68022.1\|315188_315803_+	phi PVL ORF 30-like protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
SQE68023.1\|315799_315925_-	ORF136	A0A2I6PF02	Staphylococcus_phage	1.9e-12	95.1
SQE68024.1\|316175_316760_-	putative lipoprotein	A0A2I6PD77	Staphylococcus_phage	1.4e-68	100.0
SQE68025.1\|316777_317239_-	pathogenicity island protein	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
SQE68026.1\|317251_317566_-	helix-turn-helix domain-containing protein	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
SQE68027.1\|317717_317954_+	Uncharacterised protein	A0A2I6PD81	Staphylococcus_phage	1.5e-37	100.0
SQE68028.1\|317967_318744_+	Rha family phage regulatory protein	A0A2I6PD87	Staphylococcus_phage	9.0e-140	99.6
SQE68029.1\|318772_318916_+	phage protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
SQE68030.1\|318905_319115_-	Uncharacterised protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
SQE68031.1\|319170_319416_+	phage protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
SQE68032.1\|319384_319750_-	phage protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
SQE68033.1\|319804_320020_+	phage protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
SQE68034.1\|320044_320308_+	DNA-binding protein	A0A2I6PDM6	Staphylococcus_phage	1.4e-44	98.9
SQE68035.1\|320320_320482_+	phage protein	A0A2I6PEZ9	Staphylococcus_phage	5.0e-21	100.0
SQE68036.1\|320560_320884_+	phage protein	A0A2I6PF12	Staphylococcus_phage	5.9e-53	100.0
SQE68037.1\|320898_321261_+	phage protein	A0A2I6PF03	Staphylococcus_phage	1.9e-55	99.2
SQE68038.1\|321257_322424_+	PD-(D/E)XK nuclease superfamily protein	A0A2D1G5B8	Staphylococcus_phage	1.2e-220	99.7
SQE68039.1\|322449_323007_+	phage protein	A0A2I6PF05	Staphylococcus_phage	1.8e-97	100.0
SQE68040.1\|323066_325028_+	DNA polymerase	A0A2I6PF18	Staphylococcus_phage	0.0e+00	99.2
SQE68041.1\|325039_325195_+	Uncharacterised protein	A0A2I6PDP0	Staphylococcus_phage	3.5e-19	94.1
SQE68042.1\|325194_325380_+	PV83 orf 23-like protein	A0A0N9BBI1	Staphylococcus_phage	6.0e-26	95.1
SQE68043.1\|325380_325740_+	PVL ORF-50-like family	A0A0E3T8L4	Staphylococcus_phage	2.7e-59	95.8
SQE68044.1\|325740_325989_+	phage family protein	Q4ZBT7	Staphylococcus_virus	3.8e-36	93.6
SQE68045.1\|326003_326396_+	phage protein	A0A2I6PE39	Staphylococcus_phage	1.6e-68	100.0
SQE68046.1\|326392_326584_+	phage protein	Q4ZBT5	Staphylococcus_virus	1.5e-27	100.0
SQE68047.1\|326583_327015_+	phage protein	Q4ZBT4	Staphylococcus_virus	1.6e-74	99.3
SQE68048.1\|327007_327256_+	Phage protein	A0A0E3T8I2	Staphylococcus_phage	1.0e-36	93.9
SQE68049.1\|327248_327785_+	dUTPase family protein	A0A1P8L6E0	Staphylococcus_phage	2.1e-95	100.0
SQE68050.1\|327821_328064_+	Uncharacterised protein	NA	NA	NA	NA
SQE68051.1\|328060_328297_+	phage protein	C8CH06	Staphylococcus_phage	1.9e-32	92.3
SQE68052.1\|328321_328558_+	phage protein	A7TWB3	Staphylococcus_phage	7.6e-34	93.6
SQE68053.1\|328547_328937_+	phage membrane protein	M9QX07	Staphylococcus_phage	2.8e-65	100.0
SQE68054.1\|328933_329086_+	transcriptional activator rinB-like protein	A7TWI2	Staphylococcus_phage	2.6e-19	100.0
SQE68055.1\|329153_329354_+	putative exported phage protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
SQE68056.1\|329405_331853_+	E family protein	R4WAL1	Staphylococcus_phage	0.0e+00	99.0
SQE68057.1\|332193_332484_+	VRR-NUC domain-containing protein	A0A2I6PDQ7	Staphylococcus_phage	4.9e-51	100.0
SQE68058.1\|332473_333832_+	putative DNA helicase	A0A2I6PDQ0	Staphylococcus_phage	9.5e-262	99.8
SQE68059.1\|333844_334282_+	phage regulatory protein	A0A2I6PDN2	Staphylococcus_phage	6.1e-77	100.0
SQE68060.1\|334443_334758_+	HNH endonuclease family protein	A0A2I6PDR3	Staphylococcus_phage	8.5e-57	100.0
SQE68061.1\|334884_335190_+\|terminase	Phage terminase small subunit	A0A2I6PDN6	Staphylococcus_phage	3.7e-49	100.0
SQE68062.1\|335179_336871_+\|terminase	terminase large subunit	A0A2I6PDP8	Staphylococcus_phage	0.0e+00	99.8
SQE68063.1\|336875_338114_+\|portal	portal protein	A0A2K9VBP0	Staphylococcus_phage	1.5e-234	99.8
SQE68064.1\|338097_338871_+\|protease	phage protease	A0A2I6PEQ7	Staphylococcus_phage	3.2e-137	99.6
SQE68065.1\|338882_340046_+\|capsid	putative phage capsid protein	A0A2I6PEQ3	Staphylococcus_phage	1.2e-217	100.0
SQE68066.1\|340114_340393_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
SQE68067.1\|340404_340737_+	phage protein	A0A2I6PEH8	Staphylococcus_phage	3.1e-57	100.0
SQE68068.1\|340733_341135_+	putative phiSLT protein	R4WAN5	Staphylococcus_phage	8.1e-68	100.0
SQE68069.1\|341135_341531_+	phage protein	R4WAV1	Staphylococcus_phage	4.4e-66	99.2
SQE68070.1\|341565_342207_+\|tail	major tail protein	A0A2I6PEP6	Staphylococcus_phage	5.5e-119	98.1
SQE68071.1\|342298_342754_+\|tail	major tail protein	Q9B0D4	Staphylococcus_phage	4.5e-75	96.7
SQE68072.1\|342811_343162_+	putative gp48	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
SQE68073.1\|343203_343362_+	putative gp49	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
SQE68074.1\|343375_349576_+	TP901 family prophage L54a	U5U762	Staphylococcus_phage	0.0e+00	98.6
SQE68075.1\|349575_350400_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
SQE68076.1\|350408_351992_+\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
SQE68077.1\|351991_352282_+	putative gp53	U5U457	Staphylococcus_phage	2.1e-49	100.0
SQE68078.1\|352297_354208_+	putative minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
SQE68079.1\|354207_355674_+\|tail	putative phage tail protein	A0A2I6PE72	Staphylococcus_phage	1.5e-273	100.0
SQE68080.1\|355673_356063_+	phage protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
SQE68081.1\|356055_356220_+	phage protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
SQE68082.1\|356265_356565_+	hypothetical phage-related protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
SQE68083.1\|356700_357003_+	SPP1 family prophage L54a	B7T0L0	Staphylococcus_virus	4.1e-48	100.0
SQE68084.1\|357013_358468_+	amidase	A0A2I6PF47	Staphylococcus_phage	1.1e-287	99.2
359207:359224	attR	NA	NA	NA	NA

DBSCAN-SWA_2

403188 : 418719

Staphylococcus_phage(100.0%)

terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE68127.1\|403188_403380_-	Uncharacterised protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
SQE68128.1\|403623_403920_+	30S ribosomalprotein S6p	NA	NA	NA	NA
SQE68129.1\|403940_404444_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
SQE68130.1\|404495_404738_+	30S ribosomalprotein S18p	NA	NA	NA	NA
SQE68131.1\|404976_405876_-	Abortive infection bacteriophage resistance protein	NA	NA	NA	NA
SQE68132.1\|405877_407092_-	Integrase	Q4ZE80	Staphylococcus_phage	3.6e-220	96.5
SQE68133.1\|407040_407259_-	Uncharacterised protein	NA	NA	NA	NA
SQE68134.1\|407370_408066_-	Xre family transcriptional regulator	NA	NA	NA	NA
SQE68135.1\|408210_408423_+	Ps3 protein 14 family transcriptional regulator	NA	NA	NA	NA
SQE68136.1\|408455_408728_+	pathogenicity island protein	Q4ZE77	Staphylococcus_phage	3.8e-37	88.4
SQE68137.1\|408739_408886_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
SQE68138.1\|408878_409088_+	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
SQE68139.1\|409090_409390_+	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	5.1e-19	57.0
SQE68140.1\|409464_411081_+	bacteriophage resistance protein	A0A1W6JPF4	Staphylococcus_phage	8.1e-244	77.2
SQE68141.1\|411256_412060_+	pathogenicity island replication protein	Q4ZE69	Staphylococcus_phage	1.4e-148	94.8
SQE68142.1\|412046_412319_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	1.7e-40	92.2
SQE68143.1\|412320_412962_+	mobile element-associated protein, putative	Q4ZE67	Staphylococcus_phage	9.1e-114	95.3
SQE68144.1\|413405_413750_+	mobile element-associated protein, putative	A0A1W6JQF3	Staphylococcus_phage	1.4e-57	100.0
SQE68145.1\|413784_414363_+	mobile element-associated protein, putative	A0A1W6JQG0	Staphylococcus_phage	9.2e-81	100.0
SQE68146.1\|414362_414539_+	mobile-element associated protein, putative	A0A1W6JQJ5	Staphylococcus_phage	7.7e-23	100.0
SQE68147.1\|414591_415119_+	pathogenicity island protein	A0A1W6JQH7	Staphylococcus_phage	4.3e-85	95.4
SQE68148.1\|415121_415463_+\|transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	9.3e-57	96.5
SQE68149.1\|415459_415975_+\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	1.1e-74	88.4
SQE68150.1\|416192_416525_+	Uncharacterised protein	NA	NA	NA	NA
SQE68151.1\|416563_417280_+	Uncharacterised protein	NA	NA	NA	NA
SQE68152.1\|417315_417909_+	Uncharacterised protein	NA	NA	NA	NA
SQE68153.1\|418164_418719_-	secreted protein Ear	A0A1W6JQE5	Staphylococcus_phage	3.7e-71	76.1

DBSCAN-SWA_3

772551 : 780370

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE68469.1\|772551_773607_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	1.6e-14	29.5
SQE68470.1\|773606_774293_-	Response regulator SaeR	NA	NA	NA	NA
SQE68471.1\|774267_774741_-	DoxX family protein	NA	NA	NA	NA
SQE68472.1\|775081_775522_-	lipoprotein	NA	NA	NA	NA
SQE68473.1\|775801_776386_-	Uncharacterised protein	NA	NA	NA	NA
SQE68474.1\|776484_777198_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
SQE68475.1\|777201_777621_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
SQE68476.1\|777622_778291_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
SQE68477.1\|778641_779235_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
SQE68478.1\|779218_780370_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	1.2e-23	36.1

DBSCAN-SWA_4

792342 : 806959

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE68487.1\|792342_793401_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
SQE68488.1\|793695_794238_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
SQE68489.1\|794917_795835_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
SQE68490.1\|796104_797610_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
SQE68491.1\|797950_798451_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
SQE68492.1\|798470_799337_-	Integral membrane domain protein	NA	NA	NA	NA
SQE68493.1\|800137_800536_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
SQE68494.1\|800498_802604_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
SQE68495.1\|802721_803693_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
SQE68496.1\|804244_805258_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
SQE68497.1\|805244_806201_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
SQE68498.1\|806197_806959_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_5

891001 : 937013

Staphylococcus_phage(85.29%)

portal,capsid,terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE68580.1\|891001_892243_+	Selenocysteine lyase	Q2XUY6	environmental_halophage	6.3e-111	44.8
SQE68581.1\|892232_892697_+	Iron-sulfur cluster assembly scaffold protein IscU	NA	NA	NA	NA
SQE68582.1\|892850_894248_+	Scaffold protein sufB	NA	NA	NA	NA
SQE68583.1\|894315_895365_-	Integrase	A1KWY3	Staphylococcus_virus	7.7e-203	99.7
SQE68584.1\|895477_895678_+	excisionase-like protein	Q38044	Staphylococcus_phage	5.6e-30	100.0
SQE68585.1\|895614_896520_-	phage protein	A0A0F6N3N6	Staphylococcus_phage	1.4e-168	100.0
SQE68586.1\|896551_897277_-	phage protein	A0A0F6N4L7	Staphylococcus_phage	2.9e-124	99.6
SQE68587.1\|897304_897979_-	phage protein	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
SQE68588.1\|897995_898328_-	Transcriptional regulator, Cro/CI family helix-turn-helix domain protein	R4IH08	Staphylococcus_phage	4.1e-57	100.0
SQE68589.1\|898590_898785_+	helix-turn-helix domain protein	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
SQE68590.1\|898784_899552_+	Antirepressor	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
SQE68591.1\|899552_899777_+	phage protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
SQE68592.1\|899816_900266_+	phi PV83 orf 10-like protein	A1KWZ2	Staphylococcus_virus	3.0e-79	100.0
SQE68593.1\|900279_900501_+	phage protein	E0Y3P2	Staphylococcus_virus	1.5e-31	100.0
SQE68594.1\|900493_900655_+	phage protein	D2JGJ6	Staphylococcus_phage	4.3e-20	100.0
SQE68595.1\|900746_901007_+	phage protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
SQE68596.1\|901016_901238_+	phage protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
SQE68597.1\|901230_901854_+	putative phage topoisomerase	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
SQE68598.1\|901853_902282_+	Single-stranded DNA-binding protein, phage associated	B2ZYV4	Staphylococcus_phage	3.9e-60	100.0
SQE68599.1\|902295_902970_+	phage protein	C8CGZ0	Staphylococcus_phage	2.0e-127	98.7
SQE68600.1\|902966_903116_+	Uncharacterised protein	A7TWN0	Staphylococcus_phage	2.4e-17	100.0
SQE68601.1\|903108_903390_-	Uncharacterised protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
SQE68602.1\|903455_904226_+	phi ETA orf 22-like protein	A0A1W6JQ00	Staphylococcus_phage	6.4e-122	100.0
SQE68603.1\|904235_905015_+	phage like DNA replication protein dnaC	A0A1X9H042	Staphylococcus_phage	1.6e-144	98.8
SQE68604.1\|905008_905167_+	Uncharacterised protein	A0A2I6PDX0	Staphylococcus_phage	2.2e-21	94.2
SQE68605.1\|905179_905401_+	putative phi ETA-like protein	A0A1W6JQ35	Staphylococcus_phage	1.7e-35	100.0
SQE68606.1\|905410_905818_+	phage protein	A9CR74	Staphylococcus_phage	4.2e-72	97.8
SQE68607.1\|905817_906003_+	Protein of uncharacterised function (DUF3113)	M9NSS9	Staphylococcus_phage	1.6e-26	96.7
SQE68608.1\|906003_906366_+	phage-like protein	B7T0B4	Staphylococcus_virus	2.1e-46	75.8
SQE68609.1\|906365_906620_+	phage protein	Q6R831	Staphylococcus_virus	1.3e-42	100.0
SQE68610.1\|906625_906868_+	phage conserved Open Reading Frame 51	A0A2K9VBX5	Staphylococcus_phage	1.1e-40	100.0
SQE68611.1\|906881_907088_+	Phage protein	A0A2K9VBT9	Staphylococcus_phage	3.0e-34	100.0
SQE68612.1\|907090_907495_+	putative phage PVL protein	A0A0E3T8H9	Staphylococcus_phage	1.6e-71	98.5
SQE68613.1\|907491_907686_+	phage protein	A0A0E3XCV8	Staphylococcus_phage	2.5e-27	100.0
SQE68614.1\|907682_908135_+	YopX-family protein	A0A0E3XBJ3	Staphylococcus_phage	1.4e-81	100.0
SQE68615.1\|908131_908635_+	Uncharacterised protein	A0A2H4JGK2	uncultured_Caudovirales_phage	1.5e-87	95.8
SQE68616.1\|908637_908835_+	Phage protein	A0A0E3TAH1	Staphylococcus_phage	6.1e-29	98.5
SQE68617.1\|908827_909076_+	Phage protein	Q4ZBT3	Staphylococcus_virus	3.5e-37	97.6
SQE68618.1\|909068_909602_+	dUTP pyrophosphatase	A1KX16	Staphylococcus_virus	6.0e-95	98.3
SQE68619.1\|909638_909923_+	Uncharacterised protein	NA	NA	NA	NA
SQE68620.1\|909971_910496_+	Uncharacterised protein	A0A0K1LKF9	Staphylococcus_phage	2.9e-86	96.6
SQE68621.1\|910542_910716_+	transcriptional activator RinB family protein	A0A0E3TAH3	Staphylococcus_phage	1.7e-22	100.0
SQE68622.1\|910716_911118_+	putative phi PVL-like protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
SQE68623.1\|911470_911965_+	phage protein	A0A0N9BAX3	Staphylococcus_phage	3.4e-84	100.0
SQE68624.1\|911957_913181_+\|terminase	phage terminase, large subunit, PBSX family	A0A0E3XCW6	Staphylococcus_phage	1.5e-242	100.0
SQE68625.1\|913177_914602_+\|portal	phage portal protein, SPP1 family	A0A0E3T9I6	Staphylococcus_phage	4.8e-272	100.0
SQE68626.1\|914570_915521_+\|head	phage minor head protein	A0A0E3TAH5	Staphylococcus_phage	1.2e-175	99.7
SQE68627.1\|915616_916201_+	phage protein	A0A0N7E0U8	Staphylococcus_phage	1.3e-77	100.0
SQE68628.1\|916217_917132_+\|capsid	phage major capsid protein, HK97 family	A0A0H3U2U7	Staphylococcus_phage	1.2e-170	100.0
SQE68629.1\|917143_917287_+	phage protein	A0A0E3XC49	Staphylococcus_phage	4.6e-18	100.0
SQE68630.1\|917292_917643_+\|head,tail	phage gp6-like head-tail connector family protein	A0A0E3T9I9	Staphylococcus_phage	1.9e-60	100.0
SQE68631.1\|917654_917990_+\|head,tail	putative head-tail adaptor	A0A0E3TAH8	Staphylococcus_phage	8.8e-60	100.0
SQE68632.1\|917976_918384_+	phage protein	A0A0E3T8J0	Staphylococcus_phage	3.4e-74	100.0
SQE68633.1\|918396_918822_+	phage protein	A0A0E3XBP2	Staphylococcus_phage	1.2e-74	100.0
SQE68634.1\|918822_919380_+\|tail	putative tail protein	A0A0E3XD60	Staphylococcus_phage	1.8e-102	100.0
SQE68635.1\|919446_919953_+	phage family protein	Q4ZBQ7	Staphylococcus_phage	2.7e-92	100.0
SQE68636.1\|920132_920282_+	phage protein	A0A0E3TAI0	Staphylococcus_phage	2.8e-18	100.0
SQE68637.1\|920285_923171_+	phage tape measure protein	A0A0E3T8J3	Staphylococcus_phage	0.0e+00	100.0
SQE68638.1\|923185_924127_+\|tail	phage tail family protein	Q4ZBQ4	Staphylococcus_phage	5.2e-182	100.0
SQE68639.1\|924137_926024_+	GDSL-like Lipase/Acylhydrolase family protein	A0A0E3XBK1	Staphylococcus_phage	0.0e+00	100.0
SQE68640.1\|926036_927935_+	phage protein	A0A0E3T9J5	Staphylococcus_phage	0.0e+00	100.0
SQE68641.1\|927934_929758_+	phiETA ORF57-like protein	A0A0E3TAI3	Staphylococcus_phage	0.0e+00	100.0
SQE68642.1\|929757_930135_+	SLT orf 129-like protein	A0A0E3T8J6	Staphylococcus_phage	9.6e-55	100.0
SQE68643.1\|930135_930312_+	phage protein	Q8LTH6	Staphylococcus_phage	6.1e-28	100.0
SQE68644.1\|930352_930652_+	phage protein	Q4ZBP8	Staphylococcus_phage	1.3e-46	100.0
SQE68645.1\|930788_932663_+	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	A0A0E3T9J6	Staphylococcus_phage	0.0e+00	100.0
SQE68646.1\|932675_933914_+	Tail fiber protein	A0A0E3TAI6	Staphylococcus_phage	1.2e-210	100.0
SQE68647.1\|933919_934315_+	phi ETA orf 63-like protein	A0A0E3T8J8	Staphylococcus_phage	1.2e-68	100.0
SQE68648.1\|934370_934646_+	Holin	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
SQE68649.1\|934632_936045_+	Lytic enzyme, amidase	A0A0E3TAN9	Staphylococcus_phage	9.8e-286	99.8
SQE68650.1\|936170_937013_+	exfoliative toxin B	A0A0E3T8P7	Staphylococcus_phage	2.3e-157	100.0

DBSCAN-SWA_6

1092528 : 1101001

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE68793.1\|1092528_1093011_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
SQE68794.1\|1092997_1094122_+	Phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
SQE68795.1\|1094125_1094830_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
SQE68796.1\|1094829_1095093_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
SQE68797.1\|1095094_1095766_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
SQE68798.1\|1095758_1097948_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.5e-141	39.8
SQE68799.1\|1097926_1099411_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
SQE68800.1\|1099403_1100432_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
SQE68801.1\|1100434_1101001_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_7

1330606 : 1393410

Staphylococcus_phage(47.92%)

portal,capsid,terminase,transposase,tail,tRNA,head,integrase,holin

attL 1357258:1357295|attR 1392004:1392041

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE69009.1\|1330606_1332253_-\|transposase	transposase	A0ZS58	Staphylococcus_virus	1.0e-289	98.4
SQE69010.1\|1332627_1332843_-	Uncharacterised protein	NA	NA	NA	NA
SQE69011.1\|1333016_1333814_+	Phosphoesterase family protein	NA	NA	NA	NA
SQE69012.1\|1333953_1335714_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA
SQE69013.1\|1335714_1336581_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA
SQE69014.1\|1336674_1336968_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQE69015.1\|1337101_1338646_+\|tRNA	tRNA-i(6)A37 methylthiotransferase	NA	NA	NA	NA
SQE69016.1\|1338646_1339012_+	membrane protein	NA	NA	NA	NA
SQE69017.1\|1339038_1339530_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA
SQE69018.1\|1339832_1342451_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	8.5e-41	23.7
SQE69019.1\|1342463_1344473_+	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	2.8e-60	30.7
SQE69020.1\|1344487_1345021_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA
SQE69021.1\|1345495_1346314_+	Glycerol uptake facilitator protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	2.4e-26	35.1
SQE69022.1\|1346442_1347939_+	glycerol kinase	NA	NA	NA	NA
SQE69023.1\|1348096_1349770_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
SQE69024.1\|1349916_1350834_+	hydrolase	NA	NA	NA	NA
SQE69025.1\|1350851_1351787_+\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
SQE69026.1\|1351801_1352035_+	RNA-binding protein Hfq	NA	NA	NA	NA
SQE69027.1\|1352256_1352733_-	Glutathione peroxidase family protein	Q70H87	Fowlpox_virus	1.2e-22	38.0
SQE69028.1\|1352844_1354083_+	GTP-binding protein	NA	NA	NA	NA
SQE69029.1\|1354101_1355340_+	aluminum resistance protein, putative	NA	NA	NA	NA
SQE69030.1\|1355582_1355951_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA
SQE69031.1\|1355969_1357310_+	glutamine synthetase	NA	NA	NA	NA
1357258:1357295	attL	NA	NA	NA	NA
SQE69032.1\|1357449_1358577_-\|integrase	integrase family protein	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
SQE69033.1\|1358629_1359325_-	host cell surface-exposed lipofamily protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
SQE69034.1\|1359336_1359720_-	Uncharacterised protein	NA	NA	NA	NA
SQE69035.1\|1359866_1360259_-	helix-turn-helix family protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
SQE69036.1\|1360426_1360645_+	regulatory protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
SQE69037.1\|1360671_1360947_+	Uncharacterised protein	NA	NA	NA	NA
SQE69038.1\|1360951_1361086_+	Uncharacterised protein	NA	NA	NA	NA
SQE69039.1\|1361116_1361236_+	Uncharacterised protein	NA	NA	NA	NA
SQE69040.1\|1361211_1361382_+	Uncharacterised protein	Q4ZDZ8	Staphylococcus_virus	2.4e-21	89.3
SQE69041.1\|1361370_1361577_-	Uncharacterised protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
SQE69042.1\|1361637_1362321_+	prophage, antirepressor, putative	A9CR56	Staphylococcus_phage	5.2e-107	85.6
SQE69043.1\|1362419_1362596_+	phage protein	E9LT78	Staphylococcus_phage	1.9e-13	70.4
SQE69044.1\|1362666_1362984_+	phage protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
SQE69045.1\|1362973_1363240_+	phage protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
SQE69046.1\|1363244_1363781_+	glycosyl hydrolases 17 family protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
SQE69047.1\|1363781_1364561_+	bacterial dnaA family protein	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
SQE69048.1\|1364587_1365136_+	Single stranded DNA-binding protein,phage-associated	A7TWM8	Staphylococcus_phage	1.1e-91	92.9
SQE69049.1\|1365148_1366051_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
SQE69050.1\|1366051_1366342_+	PVL orf 51-like protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
SQE69051.1\|1366356_1366515_+	phage protein	A0A0E3T9L7	Staphylococcus_phage	6.7e-18	90.4
SQE69052.1\|1366520_1366832_+	Uncharacterised protein	NA	NA	NA	NA
SQE69053.1\|1366824_1367355_+	mazG nucleotide pyrophosphohydrolase domain protein	A0A1P8VVP1	Streptococcus_phage	1.2e-21	39.1
SQE69054.1\|1367589_1368054_+	Uncharacterised protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
SQE69055.1\|1368054_1368288_+	Uncharacterised protein	NA	NA	NA	NA
SQE69056.1\|1368330_1368819_+	sigma-70, region 4 family protein	R9TMH4	Paenibacillus_phage	8.7e-08	28.3
SQE69057.1\|1368971_1369400_+	homeo-like domain protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
SQE69058.1\|1369386_1370661_+\|terminase	phage terminase, large subunit, PBSX family	Q4ZE37	Staphylococcus_virus	3.2e-195	76.2
SQE69059.1\|1370673_1372122_+\|portal	phage portal protein, SPP1 family	Q4ZE36	Staphylococcus_virus	3.7e-195	69.4
SQE69060.1\|1372111_1373641_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZE35	Staphylococcus_virus	2.8e-108	61.3
SQE69061.1\|1373653_1373776_+	Uncharacterised protein	NA	NA	NA	NA
SQE69062.1\|1373935_1374514_+	Phage protein	Q4ZE34	Staphylococcus_virus	1.9e-09	50.8
SQE69063.1\|1374532_1375444_+\|capsid	phage major capsid protein Fam0118	Q4ZE33	Staphylococcus_virus	6.5e-97	59.7
SQE69064.1\|1375521_1375995_+\|tail	phage phiSLT minor tail protein	A0A2H4J9T3	uncultured_Caudovirales_phage	9.7e-12	31.6
SQE69065.1\|1376010_1376337_+	phi 11 orf36	Q4ZE31	Staphylococcus_virus	2.1e-26	56.4
SQE69066.1\|1376336_1376642_+	phage protein	Q4ZE30	Staphylococcus_virus	6.4e-17	40.6
SQE69067.1\|1376642_1376993_+	phage protein	H9A0N6	Staphylococcus_phage	9.3e-36	60.0
SQE69068.1\|1377002_1377398_+	phi 11 orf38	H9A0N7	Staphylococcus_phage	1.9e-21	42.3
SQE69069.1\|1377409_1378009_+\|tail	phage tail protein	H9A0N8	Staphylococcus_phage	7.4e-17	47.5
SQE69070.1\|1378070_1378415_+	phage protein	A0A1J0MFH0	Staphylococcus_phage	7.7e-35	58.9
SQE69071.1\|1378435_1378819_+	phi 11 orf41	Q4ZE25	Staphylococcus_virus	2.4e-37	72.3
SQE69072.1\|1378830_1382001_+\|tail	phage tail length tape-measure protein	Q4ZE24	Staphylococcus_virus	1.6e-94	54.5
SQE69073.1\|1382015_1382951_+	phi 11 orf43	A0A1J0MF79	Staphylococcus_phage	2.1e-98	55.9
SQE69074.1\|1382959_1384645_+	phage minor structural protein	Q4ZE19	Staphylococcus_virus	1.4e-108	46.5
SQE69075.1\|1384662_1385676_+	phage minor structural protein	A0A1J0MFI8	Staphylococcus_phage	6.5e-98	52.6
SQE69076.1\|1385694_1387092_+	Uncharacterised protein	A0A1J0MFK8	Staphylococcus_phage	2.6e-105	44.7
SQE69077.1\|1387104_1387494_+\|holin	holin	A0A1S6L1J2	Staphylococcus_phage	5.3e-16	38.2
SQE69078.1\|1387558_1388479_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	1.0e-65	50.8
SQE69079.1\|1389364_1390300_+	Abortive infection bacteriophage resistance protein	A0A059NT88	Lactococcus_phage	5.3e-70	44.0
SQE69080.1\|1390747_1391164_+	Uncharacterised protein	NA	NA	NA	NA
SQE69081.1\|1391327_1391435_+	Uncharacterised protein	NA	NA	NA	NA
SQE69082.1\|1391602_1391815_+	Uncharacterised protein	A0A1W6JNK0	Staphylococcus_phage	1.1e-20	75.4
SQE69083.1\|1392069_1393410_+	phage Mu protein F like protein (pseudogene)	A0A1J0MF61	Staphylococcus_phage	1.1e-140	58.9
1392004:1392041	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1669968 : 1678298

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE69319.1\|1669968_1670754_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-18	28.3
SQE69320.1\|1670879_1671770_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
SQE69321.1\|1671779_1673126_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
SQE69322.1\|1673239_1674340_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
SQE69323.1\|1674342_1675020_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
SQE69324.1\|1675150_1676257_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
SQE69325.1\|1676480_1678298_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0

DBSCAN-SWA_9

1746131 : 1755174

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE69395.1\|1746131_1746650_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
SQE69396.1\|1746671_1748945_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	1.1e-63	29.1
SQE69397.1\|1749147_1751427_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
SQE69398.1\|1751701_1751962_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
SQE69399.1\|1751980_1753120_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
SQE69400.1\|1753142_1754168_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQE69401.1\|1754169_1755174_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_10

1881070 : 1927473

Staphylococcus_phage(92.11%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE69505.1\|1881070_1887631_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	5.0e-300	96.5
SQE69506.1\|1887956_1888268_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
SQE69507.1\|1888289_1890707_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
SQE69508.1\|1890994_1892176_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
SQE69509.1\|1892285_1893239_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
SQE69510.1\|1893235_1893799_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
SQE69511.1\|1893918_1894320_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
SQE69512.1\|1894890_1895718_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
SQE69513.1\|1895951_1896953_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	3.1e-185	100.0
SQE69514.1\|1897074_1897539_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
SQE69515.1\|1897551_1898733_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
SQE69516.1\|1898743_1899376_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
SQE69517.1\|1899382_1900426_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
SQE69518.1\|1900906_1902409_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
SQE69519.1\|1902931_1903246_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
SQE69520.1\|1903245_1904538_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
SQE69521.1\|1904555_1904951_+	arsenate reductase, putative	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
SQE69522.1\|1905245_1906100_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
SQE69523.1\|1906375_1906600_-	putative staphylococcal protein	NA	NA	NA	NA
SQE69524.1\|1906798_1907269_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
SQE69525.1\|1907381_1907825_+	comK family protein	NA	NA	NA	NA
SQE69526.1\|1907811_1908255_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
SQE69527.1\|1908550_1909186_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
SQE69528.1\|1909625_1910339_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
SQE69529.1\|1910598_1910901_+	membrane protein	NA	NA	NA	NA
SQE69530.1\|1911156_1911522_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
SQE69531.1\|1911518_1911872_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
SQE69532.1\|1912254_1913088_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
SQE69533.1\|1913299_1914208_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
SQE69534.1\|1914332_1915526_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
SQE69535.1\|1915895_1917488_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
SQE69536.1\|1917865_1918636_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	2.3e-143	99.2
SQE69537.1\|1918616_1919096_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
SQE69538.1\|1919155_1919413_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	3.6e-45	98.8
SQE69539.1\|1919409_1920411_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.7e-187	98.2
SQE69540.1\|1920415_1921894_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-289	100.0
SQE69541.1\|1922052_1922535_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	3.5e-78	97.9
SQE69542.1\|1922846_1923461_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	1.1e-47	98.5
SQE69543.1\|1923541_1924537_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	4.2e-73	97.2
SQE69544.1\|1924610_1925237_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	3.9e-93	93.8
SQE69545.1\|1925322_1926006_+	staphylococcal enterotoxin Q	A0EX09	Staphylococcus_phage	3.8e-25	33.5
SQE69546.1\|1926032_1926785_+	enterotoxin C-bovine	A0A097PAT7	Streptococcus_pyogenes_phage	4.4e-51	47.2
SQE69547.1\|1926916_1927141_-	Uncharacterised protein	A0A2H4PQN8	Staphylococcus_phage	1.5e-31	97.3
SQE69548.1\|1927272_1927473_-	Uncharacterised protein	A0A2H4PQN8	Staphylococcus_phage	1.3e-10	97.1

DBSCAN-SWA_11

2027264 : 2117790

108

Staphylococcus_phage(91.14%)

protease,capsid,terminase,tail,head,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE69637.1\|2027264_2028692_-\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	NA	NA	NA	NA
SQE69638.1\|2028704_2030162_-\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
SQE69639.1\|2030163_2030466_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
SQE69640.1\|2030832_2032371_+	Sodium/proline symporter	NA	NA	NA	NA
SQE69641.1\|2032459_2033659_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA
SQE69642.1\|2033671_2035675_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
SQE69643.1\|2035678_2037871_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
SQE69644.1\|2037867_2038560_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA
SQE69645.1\|2038731_2039034_-	His repressor	NA	NA	NA	NA
SQE69646.1\|2039142_2040438_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
SQE69647.1\|2041298_2042465_+	Staphopain A precursor	NA	NA	NA	NA
SQE69648.1\|2042495_2042822_+\|protease	putative cysteine protease inhibitor (Staphostatin A)	NA	NA	NA	NA
SQE69649.1\|2043265_2043868_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
SQE69650.1\|2044138_2044960_-	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
SQE69651.1\|2044952_2046422_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
SQE69652.1\|2046605_2047682_+	nitric-oxide synthase	NA	NA	NA	NA
SQE69653.1\|2047701_2048496_+	ACT domain protein	NA	NA	NA	NA
SQE69654.1\|2048685_2050248_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA
SQE69655.1\|2050451_2051549_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	2.5e-47	34.9
SQE69656.1\|2051920_2052481_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
SQE69657.1\|2052533_2053463_+	inorganic pyrophosphatase	NA	NA	NA	NA
SQE69658.1\|2053880_2055260_+	Aldehyde dehydrogenase	NA	NA	NA	NA
SQE69659.1\|2055379_2056408_-	6-phosphogluconolactonase	NA	NA	NA	NA
SQE69660.1\|2056677_2057079_+	yolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
SQE69661.1\|2057651_2057825_-	exported protein	NA	NA	NA	NA
SQE69662.1\|2058203_2059316_+	choloylglycine hydrolase	NA	NA	NA	NA
SQE69663.1\|2059372_2060215_-	exported protein	NA	NA	NA	NA
SQE69664.1\|2060211_2060769_-	Predicted membrane protein	NA	NA	NA	NA
SQE69665.1\|2060828_2061353_-	membrane protein	NA	NA	NA	NA
SQE69666.1\|2061473_2062037_+	Thioredoxin	NA	NA	NA	NA
SQE69667.1\|2062102_2062843_-	ABC-2 transporter family protein	NA	NA	NA	NA
SQE69668.1\|2062842_2063715_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
SQE69669.1\|2063711_2064392_-	membrane protein	NA	NA	NA	NA
SQE69670.1\|2064392_2065289_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
SQE69671.1\|2065285_2065666_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQE69672.1\|2065924_2066101_-	membrane protein	NA	NA	NA	NA
SQE69673.1\|2066642_2067929_+	Aspartate aminotransferase	NA	NA	NA	NA
SQE69674.1\|2068252_2068543_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA
SQE69675.1\|2068553_2070302_-	MHC class II analog (pseudogene)	NA	NA	NA	NA
SQE69676.1\|2070687_2070888_+	beta-hemolysin	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
SQE69677.1\|2072062_2072413_-	Involved in expression of fibrinogen binding protein, phage associated	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
SQE69678.1\|2073097_2073547_+	Chemotaxis-inhibiting protein CHIPS, phage associated	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
SQE69679.1\|2073641_2073938_-	amidase	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
SQE69680.1\|2074626_2075118_-	Staphylokinase	A0A1W6JQ12	Staphylococcus_phage	3.6e-86	100.0
SQE69681.1\|2075308_2076064_-	Autolysin	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
SQE69682.1\|2076075_2076330_-\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
SQE69683.1\|2076867_2077098_-	phage protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
SQE69684.1\|2077221_2077509_-	phage protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
SQE69685.1\|2077555_2077708_-	phage protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
SQE69686.1\|2077697_2081483_-	phage minor structural protein	C8CH32	Staphylococcus_phage	0.0e+00	99.7
SQE69687.1\|2081498_2082983_-	bacteriophage protein	A0A068A242	Staphylococcus_phage	1.5e-297	100.0
SQE69688.1\|2082979_2087524_-\|tail	bacteriophage tail tape measure protein, TP901 family	A0A075M036	Staphylococcus_phage	0.0e+00	99.1
SQE69689.1\|2087580_2087718_-	phage protein	A0A068A227	Staphylococcus_phage	3.4e-18	100.0
SQE69690.1\|2087768_2088119_-	phage protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
SQE69691.1\|2088434_2089079_-\|tail	phage major tail protein	G4KNQ7	Staphylococcus_phage	6.5e-120	100.0
SQE69692.1\|2089079_2089487_-	putative bacteriophage protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
SQE69693.1\|2089483_2089888_-	bacteriophage protein	G4KNQ5	Staphylococcus_phage	4.3e-69	100.0
SQE69694.1\|2089884_2090247_-\|head,tail	phage head-tail adaptor	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
SQE69695.1\|2090230_2090515_-	Gp6 protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
SQE69696.1\|2090504_2090789_-\|terminase	phage terminase small subunit	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
SQE69697.1\|2090808_2091954_-\|capsid	Phage major capsid protein	G4KNQ3	Staphylococcus_phage	3.6e-214	99.7
SQE69698.1\|2091977_2092715_-	ATP-dependent endopeptidase clp proteolytic subunit	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
SQE69699.1\|2092698_2093886_-	Portal protein, phage associated	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
SQE69700.1\|2093901_2095563_-\|terminase	Phage terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
SQE69701.1\|2095559_2095904_-	phage protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
SQE69702.1\|2096034_2096331_-	phage-associated homing endonuclease	G4KNP8	Staphylococcus_phage	1.3e-51	100.0
SQE69703.1\|2096565_2096982_-	phage transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
SQE69704.1\|2097009_2097213_-	phage protein	A0A2I6PDV9	Staphylococcus_phage	1.8e-28	100.0
SQE69705.1\|2097209_2097464_-	Uncharacterised protein	D2JLD8	Staphylococcus_phage	8.5e-39	100.0
SQE69706.1\|2097442_2097859_-	Uncharacterised protein	D2JLD8	Staphylococcus_phage	7.8e-66	100.0
SQE69707.1\|2097865_2098018_-	Uncharacterised protein	A0A2I6PDV2	Staphylococcus_phage	5.4e-17	100.0
SQE69708.1\|2098017_2098167_-	transcriptional activator RinB	R9QSU6	Staphylococcus_phage	1.8e-17	100.0
SQE69709.1\|2098163_2098370_-	phage protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
SQE69710.1\|2098406_2098943_-	dUTPase family protein	R4IG63	Staphylococcus_phage	9.4e-96	100.0
SQE69711.1\|2098935_2099184_-	Phage protein	A0A2K9VBU0	Staphylococcus_phage	3.1e-38	100.0
SQE69712.1\|2099176_2099461_-	phage protein	E9LT36	Staphylococcus_phage	2.7e-46	100.0
SQE69713.1\|2099457_2099907_-	YopX-family protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
SQE69714.1\|2099903_2100098_-	phage protein	A0A2I6PE33	Staphylococcus_phage	2.5e-27	100.0
SQE69715.1\|2100094_2100481_-	phage protein	I1W655	Staphylococcus_phage	4.1e-69	100.0
SQE69716.1\|2100494_2100737_-	phage family protein	R9QT89	Staphylococcus_phage	3.0e-41	100.0
SQE69717.1\|2100740_2101109_-	Phage protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
SQE69718.1\|2101121_2101526_-	phage protein	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
SQE69719.1\|2101534_2101753_-	phage protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
SQE69720.1\|2101759_2102653_-	Phage protein	A0A0E3TAG7	Staphylococcus_phage	1.1e-141	100.0
SQE69721.1\|2102682_2103153_-	Single-stranded DNA-binding protein, phage associated	A0A0E3T9H6	Staphylococcus_phage	5.7e-81	100.0
SQE69722.1\|2103153_2103639_-	Metallo-beta-lactamase superfamily domain protein in prophage	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
SQE69723.1\|2103851_2104772_-	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
SQE69724.1\|2104773_2106717_-	Uncharacterized conserved protein	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
SQE69725.1\|2106725_2106989_-	phage protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
SQE69726.1\|2106997_2107258_-	Putative cytosolic protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
SQE69727.1\|2107262_2107565_-	Putative cytosolic protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
SQE69728.1\|2107659_2107821_-	phage protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
SQE69729.1\|2107817_2108141_-	Uncharacterized protein conserved in bacteria	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
SQE69730.1\|2108195_2108576_+	Phage protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
SQE69731.1\|2108562_2108760_-	Phage protein	O80075	Staphylococcus_phage	3.5e-24	87.7
SQE69732.1\|2108775_2109528_-	antirepressor	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
SQE69733.1\|2109578_2109908_+	Phage protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
SQE69734.1\|2109896_2110112_-	phage protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
SQE69735.1\|2110127_2110391_-	putative phage transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
SQE69736.1\|2110523_2111237_+	CI-like repressor, phage associated	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
SQE69737.1\|2111252_2112185_+	DNA polymerase III subunit alpha	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
SQE69738.1\|2112190_2112532_+	phage protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
SQE69739.1\|2112735_2112918_+	Putative cytosolic protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
SQE69740.1\|2113017_2113482_+	Uncharacterised protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
SQE69741.1\|2113540_2114578_+	DNA integration/recombination/inversion protein	A0A1X9H022	Staphylococcus_phage	2.6e-179	100.0
SQE69742.1\|2114634_2115459_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
SQE69743.1\|2115696_2116713_-	gamma-hemolysin component B	A0A1X9IGW5	Staphylococcus_phage	8.7e-26	30.6
SQE69744.1\|2116734_2117790_-	Leukocidin S subunit	A0A2I6PDF3	Staphylococcus_phage	1.3e-35	32.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483311

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection