Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483316 Staphylococcus aureus strain NCTC13395 genome assembly, chromosome: 1 9 crisprs cas3,DEDDh,DinG,WYL,csa3 12 2 9 1

Results visualization

1. LS483316
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_1 397887-397987 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_2 641134-641226 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_3 798386-798466 Unclear NA
1 spacers
cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_4 803785-803870 Unclear NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_5 848946-849027 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_6 1121246-1121432 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_7 1812215-1812425 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_8 2255979-2256129 Orphan NA
2 spacers
csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483316_9 2380141-2380334 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 2826830-2826858 0 1.0
LS483316_5 5.1|848970|34|LS483316|CRISPRCasFinder 848970-849003 34 LS483316.1 1327873-1327906 0 1.0
LS483316_5 5.1|848970|34|LS483316|CRISPRCasFinder 848970-849003 34 LS483316.1 1417060-1417093 0 1.0
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 359292-359328 0 1.0
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 803843-803879 0 1.0
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 1018695-1018731 0 1.0
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 1327832-1327868 0 1.0
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 2012548-2012584 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 138543-138579 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 640171-640207 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 756296-756332 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 757266-757302 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 757322-757358 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 803899-803935 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 1327890-1327926 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 1417040-1417076 0 1.0
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 2014005-2014041 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 138486-138505 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 281683-281702 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 359406-359425 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 803974-803993 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 804032-804051 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 849024-849043 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 919142-919161 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 1046809-1046828 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 1327774-1327793 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 1417173-1417192 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 1611593-1611612 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 1812139-1812158 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 2013963-2013982 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 2571685-2571704 0 1.0
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 2826842-2826861 0 1.0
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 359409-359437 1 0.966
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 1812142-1812170 1 0.966
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 LS483316.1 766806-766831 1 0.962
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 LS483316.1 1121416-1121441 1 0.962
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 LS483316.1 2826742-2826767 1 0.962
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 LS483316.1 2826798-2826823 1 0.962
LS483316_6 6.1|1121265|37|LS483316|CRT 1121265-1121301 37 LS483316.1 1812139-1812175 1 0.973
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 1417098-1417134 1 0.973
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 1611634-1611670 1 0.973
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 2659864-2659900 1 0.973
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 1046734-1046770 1 0.973
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 2546402-2546438 1 0.973
LS483316_7 7.1|1812253|21|LS483316|CRT 1812253-1812273 21 LS483316.1 1812194-1812214 1 0.952
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 281738-281757 1 0.95
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 811300-811319 1 0.95
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 1377102-1377121 1 0.95
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 1645560-1645579 1 0.95
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 2023312-2023331 1 0.95
LS483316_7 7.3|1812370|18|LS483316|CRT 1812370-1812387 18 LS483316.1 1812197-1812214 1 0.944
LS483316_9 9.2|2380220|36|LS483316|CRT 2380220-2380255 36 LS483316.1 1812135-1812170 1 0.972
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 849012-849040 2 0.931
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 919130-919158 2 0.931
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 1611581-1611609 2 0.931
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 2023300-2023328 2 0.931
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 LS483316.1 2571688-2571716 2 0.931
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 LS483316.1 766862-766887 2 0.923
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 LS483316.1 899605-899630 2 0.923
LS483316_6 6.1|1121265|37|LS483316|CRT 1121265-1121301 37 LS483316.1 849007-849043 2 0.946
LS483316_6 6.1|1121265|37|LS483316|CRT 1121265-1121301 37 LS483316.1 1611576-1611612 2 0.946
LS483316_6 6.1|1121265|37|LS483316|CRT 1121265-1121301 37 LS483316.1 2023295-2023331 2 0.946
LS483316_6 6.1|1121265|37|LS483316|CRT 1121265-1121301 37 LS483316.1 2571685-2571721 2 0.946
LS483316_6 6.1|1121265|37|LS483316|CRT 1121265-1121301 37 LS483316.1 2826825-2826861 2 0.946
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 1117353-1117389 2 0.946
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 1121433-1121469 2 0.946
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 2012489-2012525 2 0.946
LS483316_6 6.2|1121321|37|LS483316|CRT 1121321-1121357 37 LS483316.1 2826770-2826806 2 0.946
LS483316_6 6.3|1121377|37|LS483316|CRT 1121377-1121413 37 LS483316.1 1117409-1117445 2 0.946
LS483316_7 7.2|1812312|20|LS483316|CRT 1812312-1812331 20 LS483316.1 771406-771425 2 0.9
LS483316_9 9.1|2380164|33|LS483316|CRT 2380164-2380196 33 LS483316.1 803851-803883 2 0.939
LS483316_9 9.1|2380164|33|LS483316|CRT 2380164-2380196 33 LS483316.1 1327828-1327860 2 0.939
LS483316_9 9.1|2380164|33|LS483316|CRT 2380164-2380196 33 LS483316.1 1417106-1417138 2 0.939
LS483316_9 9.1|2380164|33|LS483316|CRT 2380164-2380196 33 LS483316.1 2012556-2012588 2 0.939
LS483316_9 9.1|2380164|33|LS483316|CRT 2380164-2380196 33 LS483316.1 2659872-2659904 2 0.939
LS483316_9 9.2|2380220|36|LS483316|CRT 2380220-2380255 36 LS483316.1 1611581-1611616 2 0.944
LS483316_9 9.2|2380220|36|LS483316|CRT 2380220-2380255 36 LS483316.1 2023300-2023335 2 0.944
LS483316_9 9.3|2380279|33|LS483316|CRT 2380279-2380311 33 LS483316.1 803851-803883 2 0.939
LS483316_9 9.3|2380279|33|LS483316|CRT 2380279-2380311 33 LS483316.1 1327828-1327860 2 0.939
LS483316_9 9.3|2380279|33|LS483316|CRT 2380279-2380311 33 LS483316.1 2012556-2012588 2 0.939
LS483316_9 9.3|2380279|33|LS483316|CRT 2380279-2380311 33 LS483316.1 2659872-2659904 2 0.939

1. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 2826830-2826858, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

2. spacer 5.1|848970|34|LS483316|CRISPRCasFinder matches to position: 1327873-1327906, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 5.1|848970|34|LS483316|CRISPRCasFinder matches to position: 1417060-1417093, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

4. spacer 6.2|1121321|37|LS483316|CRT matches to position: 359292-359328, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

5. spacer 6.2|1121321|37|LS483316|CRT matches to position: 803843-803879, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

6. spacer 6.2|1121321|37|LS483316|CRT matches to position: 1018695-1018731, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

7. spacer 6.2|1121321|37|LS483316|CRT matches to position: 1327832-1327868, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

8. spacer 6.2|1121321|37|LS483316|CRT matches to position: 2012548-2012584, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

9. spacer 6.3|1121377|37|LS483316|CRT matches to position: 138543-138579, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

10. spacer 6.3|1121377|37|LS483316|CRT matches to position: 640171-640207, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 6.3|1121377|37|LS483316|CRT matches to position: 756296-756332, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 6.3|1121377|37|LS483316|CRT matches to position: 757266-757302, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

13. spacer 6.3|1121377|37|LS483316|CRT matches to position: 757322-757358, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

14. spacer 6.3|1121377|37|LS483316|CRT matches to position: 803899-803935, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

15. spacer 6.3|1121377|37|LS483316|CRT matches to position: 1327890-1327926, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

16. spacer 6.3|1121377|37|LS483316|CRT matches to position: 1417040-1417076, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

17. spacer 6.3|1121377|37|LS483316|CRT matches to position: 2014005-2014041, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

18. spacer 7.2|1812312|20|LS483316|CRT matches to position: 138486-138505, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

19. spacer 7.2|1812312|20|LS483316|CRT matches to position: 281683-281702, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

20. spacer 7.2|1812312|20|LS483316|CRT matches to position: 359406-359425, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

21. spacer 7.2|1812312|20|LS483316|CRT matches to position: 803974-803993, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

22. spacer 7.2|1812312|20|LS483316|CRT matches to position: 804032-804051, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

23. spacer 7.2|1812312|20|LS483316|CRT matches to position: 849024-849043, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

24. spacer 7.2|1812312|20|LS483316|CRT matches to position: 919142-919161, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

25. spacer 7.2|1812312|20|LS483316|CRT matches to position: 1046809-1046828, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

26. spacer 7.2|1812312|20|LS483316|CRT matches to position: 1327774-1327793, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

27. spacer 7.2|1812312|20|LS483316|CRT matches to position: 1417173-1417192, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

28. spacer 7.2|1812312|20|LS483316|CRT matches to position: 1611593-1611612, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

29. spacer 7.2|1812312|20|LS483316|CRT matches to position: 1812139-1812158, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

30. spacer 7.2|1812312|20|LS483316|CRT matches to position: 2013963-2013982, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

31. spacer 7.2|1812312|20|LS483316|CRT matches to position: 2571685-2571704, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

32. spacer 7.2|1812312|20|LS483316|CRT matches to position: 2826842-2826861, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

33. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 359409-359437, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

34. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 1812142-1812170, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

35. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to position: 766806-766831, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

36. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to position: 1121416-1121441, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

37. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to position: 2826742-2826767, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

38. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to position: 2826798-2826823, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

39. spacer 6.1|1121265|37|LS483316|CRT matches to position: 1812139-1812175, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacagacaatgcaagttg	Protospacer
*******.*****************************

40. spacer 6.2|1121321|37|LS483316|CRT matches to position: 1417098-1417134, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

41. spacer 6.2|1121321|37|LS483316|CRT matches to position: 1611634-1611670, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttactataatgtgcaagtt	Protospacer
********************** **************

42. spacer 6.2|1121321|37|LS483316|CRT matches to position: 2659864-2659900, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcgagtt	Protospacer
********************************.****

43. spacer 6.3|1121377|37|LS483316|CRT matches to position: 1046734-1046770, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

44. spacer 6.3|1121377|37|LS483316|CRT matches to position: 2546402-2546438, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctagagacaatgcaagtt	Protospacer
********************** **************

45. spacer 7.1|1812253|21|LS483316|CRT matches to position: 1812194-1812214, mismatch: 1, identity: 0.952

agctggccaatagtcagcttt	CRISPR spacer
agctggccaatagttagcttt	Protospacer
**************.******

46. spacer 7.2|1812312|20|LS483316|CRT matches to position: 281738-281757, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaaattcgaaaagaaattct	Protospacer
*** ****************

47. spacer 7.2|1812312|20|LS483316|CRT matches to position: 811300-811319, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaatgaaattct	Protospacer
*********** ********

48. spacer 7.2|1812312|20|LS483316|CRT matches to position: 1377102-1377121, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gattttcgaaaagaaattct	Protospacer
** *****************

49. spacer 7.2|1812312|20|LS483316|CRT matches to position: 1645560-1645579, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgtaaagaaattct	Protospacer
******** ***********

50. spacer 7.2|1812312|20|LS483316|CRT matches to position: 2023312-2023331, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaggaaattct	Protospacer
***********.********

51. spacer 7.3|1812370|18|LS483316|CRT matches to position: 1812197-1812214, mismatch: 1, identity: 0.944

tggccaatagtcagcttt	CRISPR spacer
tggccaatagttagcttt	Protospacer
***********.******

52. spacer 9.2|2380220|36|LS483316|CRT matches to position: 1812135-1812170, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

53. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 849012-849040, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

54. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 919130-919158, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

55. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 1611581-1611609, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

56. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 2023300-2023328, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

57. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to position: 2571688-2571716, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

58. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to position: 766862-766887, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

59. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to position: 899605-899630, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

60. spacer 6.1|1121265|37|LS483316|CRT matches to position: 849007-849043, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

61. spacer 6.1|1121265|37|LS483316|CRT matches to position: 1611576-1611612, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

62. spacer 6.1|1121265|37|LS483316|CRT matches to position: 2023295-2023331, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

63. spacer 6.1|1121265|37|LS483316|CRT matches to position: 2571685-2571721, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

64. spacer 6.1|1121265|37|LS483316|CRT matches to position: 2826825-2826861, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

65. spacer 6.2|1121321|37|LS483316|CRT matches to position: 1117353-1117389, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcgaaaagtcagcttacaaaaatgtgcaagtt	Protospacer
*****.****************** ************

66. spacer 6.2|1121321|37|LS483316|CRT matches to position: 1121433-1121469, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

67. spacer 6.2|1121321|37|LS483316|CRT matches to position: 2012489-2012525, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacgataatgtgcaggtt	Protospacer
**********************.**********.***

68. spacer 6.2|1121321|37|LS483316|CRT matches to position: 2826770-2826806, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

69. spacer 6.3|1121377|37|LS483316|CRT matches to position: 1117409-1117445, mismatch: 2, identity: 0.946

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggaaccccaatttctacagacaatgcaagtt	Protospacer
********* .**************************

70. spacer 7.2|1812312|20|LS483316|CRT matches to position: 771406-771425, mismatch: 2, identity: 0.9

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcaaaaaggaattct	Protospacer
*******.*****.******

71. spacer 9.1|2380164|33|LS483316|CRT matches to position: 803851-803883, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

72. spacer 9.1|2380164|33|LS483316|CRT matches to position: 1327828-1327860, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

73. spacer 9.1|2380164|33|LS483316|CRT matches to position: 1417106-1417138, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

74. spacer 9.1|2380164|33|LS483316|CRT matches to position: 2012556-2012588, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

75. spacer 9.1|2380164|33|LS483316|CRT matches to position: 2659872-2659904, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

76. spacer 9.2|2380220|36|LS483316|CRT matches to position: 1611581-1611616, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

77. spacer 9.2|2380220|36|LS483316|CRT matches to position: 2023300-2023335, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

78. spacer 9.3|2380279|33|LS483316|CRT matches to position: 803851-803883, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

79. spacer 9.3|2380279|33|LS483316|CRT matches to position: 1327828-1327860, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

80. spacer 9.3|2380279|33|LS483316|CRT matches to position: 2012556-2012588, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

81. spacer 9.3|2380279|33|LS483316|CRT matches to position: 2659872-2659904, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
LS483316_4 4.1|803815|26|LS483316|CRISPRCasFinder 803815-803840 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
LS483316_3 3.1|798412|29|LS483316|CRISPRCasFinder 798412-798440 29 MN693281 Marine virus AFVG_25M371, complete genome 6448-6476 7 0.759

1. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

2. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

3. spacer 4.1|803815|26|LS483316|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

4. spacer 3.1|798412|29|LS483316|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 735384 : 743205 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 755177 : 770020 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1020207 : 1033910 14 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1660654 : 1669697 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 1678327 : 1740529 57 Streptococcus_phage(44.44%) tRNA,transposase,protease NA
DBSCAN-SWA_6 1817312 : 1934403 106 Staphylococcus_phage(86.96%) protease,tRNA,transposase,bacteriocin NA
DBSCAN-SWA_7 1959766 : 2002522 70 Staphylococcus_phage(78.57%) integrase,head,holin,terminase,capsid,tail,portal attL 1969991:1970008|attR 2005986:2006003
DBSCAN-SWA_8 2039187 : 2120356 106 Staphylococcus_phage(87.34%) integrase,head,protease,holin,terminase,capsid,tail attL 2040295:2040313|attR 2096597:2096615
DBSCAN-SWA_9 2564839 : 2598126 30 Bacillus_virus(25.0%) transposase,holin NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
LS483316.1|SQE82041.1|2594374_2594740_-|Uncharacterised-protein 2594374_2594740_- 121 aa aa NA NA NA 2564839-2598126 yes