CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483324	Staphylococcus aureus strain NCTC10344 genome assembly, chromosome: 1	5 crisprs	csa3,cas3,DEDDh,DinG,WYL	4	1	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483324_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483324_1

214943-215024

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483324_1

>merge|LS483324|1|214943-215024|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>LS483324|1|1|214943-215024|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483324.1\|SQE98765.1\|209347_210493_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	unknown	unknown	gnl\|CDD\|223458
LS483324.1\|SQE98769.1\|213834_214794_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	unknown	unknown	gnl\|CDD\|224151
LS483324.1\|SQE98764.1\|208008_209271_+\|capsular-polysaccharide-synthesis-enzyme	unknown	unknown	gnl\|CDD\|223749
LS483324.1\|SQE98776.1\|220070_220430_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|227896
LS483324.1\|SQE98760.1\|205307_205574_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	unknown	unknown	gnl\|CDD\|340825
LS483324.1\|SQE98778.1\|222013_223264_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|340887
LS483324.1\|SQE98766.1\|210557_210884_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
LS483324.1\|SQE98773.1\|217077_218052_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	unknown	unknown	gnl\|CDD\|270271
LS483324.1\|SQE98762.1\|206510_207068_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	unknown	unknown	gnl\|CDD\|225059
LS483324.1\|SQE98779.1\|223710_230886_+\|thioester-reductase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
LS483324.1\|SQE98774.1\|218048_218810_+\|ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|223673
LS483324.1\|SQE98770.1\|215087_215291_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483324.1\|SQE98775.1\|218819_219854_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
LS483324.1\|SQE98763.1\|207067_207955_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	unknown	unknown	gnl\|CDD\|187543
LS483324.1\|SQE98772.1\|216323_217064_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
LS483324.1\|SQE98777.1\|220602_221628_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
LS483324.1\|SQE98761.1\|205570_206500_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	unknown	unknown	gnl\|CDD\|340825
LS483324.1\|SQE98767.1\|210890_211274_-\|membrane-spanning-protein	unknown	unknown	gnl\|CDD\|377291
LS483324.1\|SQE98768.1\|211700_213188_+\|Aldehyde-dehydrogenase-B	unknown	unknown	gnl\|CDD\|143435
LS483324.1\|SQE98771.1\|215469_215982_+\|alpha-helical-coiled-coil-protein	unknown	unknown	gnl\|CDD\|379428

Protein	Function_ID	Function_description	E-value
LS483324.1\|SQE98765.1\|209347_210493_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8P	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
LS483324.1\|SQE98769.1\|213834_214794_+\|putative-cation-efflux-system-membrane-protein-similar-to-CzcD	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
LS483324.1\|SQE98764.1\|208008_209271_+\|capsular-polysaccharide-synthesis-enzyme	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
LS483324.1\|SQE98776.1\|220070_220430_+\|Putative-cytosolic-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
LS483324.1\|SQE98760.1\|205307_205574_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	0.00111637
LS483324.1\|SQE98778.1\|222013_223264_+\|integral-membrane-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
LS483324.1\|SQE98766.1\|210557_210884_-\|Heme-degrading-cytoplasmic-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
LS483324.1\|SQE98773.1\|217077_218052_+\|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.03649e-50
LS483324.1\|SQE98762.1\|206510_207068_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5M	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
LS483324.1\|SQE98779.1\|223710_230886_+\|thioester-reductase-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
LS483324.1\|SQE98774.1\|218048_218810_+\|ABC-transporter-permease-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
LS483324.1\|SQE98775.1\|218819_219854_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.63983e-20
LS483324.1\|SQE98763.1\|207067_207955_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.67203e-118
LS483324.1\|SQE98772.1\|216323_217064_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.48266e-112
LS483324.1\|SQE98777.1\|220602_221628_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
LS483324.1\|SQE98761.1\|205570_206500_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	6.63314e-52
LS483324.1\|SQE98767.1\|210890_211274_-\|membrane-spanning-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	7.54946e-41
LS483324.1\|SQE98768.1\|211700_213188_+\|Aldehyde-dehydrogenase-B	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
LS483324.1\|SQE98771.1\|215469_215982_+\|alpha-helical-coiled-coil-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26

>LS483324.1|SQE98769.1|213834_214794_+|putative-cation-efflux-system-membrane-protein-similar-to-CzcD
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>LS483324.1|SQE98768.1|211700_213188_+|Aldehyde-dehydrogenase-B
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDKEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>LS483324.1|SQE98767.1|210890_211274_-|membrane-spanning-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIAFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>LS483324.1|SQE98766.1|210557_210884_-|Heme-degrading-cytoplasmic-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>LS483324.1|SQE98765.1|209347_210493_+|Capsular-polysaccharide-synthesis-enzyme-Cap8P
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERILITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK
>LS483324.1|SQE98764.1|208008_209271_+|capsular-polysaccharide-synthesis-enzyme
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEIYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>LS483324.1|SQE98763.1|207067_207955_+|Capsular-polysaccharide-synthesis-enzyme-Cap8N
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSMLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>LS483324.1|SQE98762.1|206510_207068_+|Capsular-polysaccharide-synthesis-enzyme-Cap5M
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>LS483324.1|SQE98761.1|205570_206500_+|Capsular-polysaccharide-synthesis-enzyme-Cap5L
MINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>LS483324.1|SQE98760.1|205307_205574_+|Capsular-polysaccharide-synthesis-enzyme-Cap5L
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDGHMNIVIINRFLKPRCIVVFAFDVSSIRGLITKVRLEGSSISLVYFQNS
>LS483324.1|SQE98770.1|215087_215291_-|Uncharacterised-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>LS483324.1|SQE98771.1|215469_215982_+|alpha-helical-coiled-coil-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>LS483324.1|SQE98772.1|216323_217064_+|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSLKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>LS483324.1|SQE98773.1|217077_218052_+|ABC-type-nitrate/sulfonate/bicarbonate-transporter,-TauA
MKRLSIIVIIGIFIIIGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>LS483324.1|SQE98774.1|218048_218810_+|ABC-transporter-permease-protein
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>LS483324.1|SQE98775.1|218819_219854_+|acyl-CoA-dehydrogenase
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>LS483324.1|SQE98776.1|220070_220430_+|Putative-cytosolic-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>LS483324.1|SQE98777.1|220602_221628_+|NAD-dependent-formate-dehydrogenase
MKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>LS483324.1|SQE98778.1|222013_223264_+|integral-membrane-protein
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>LS483324.1|SQE98779.1|223710_230886_+|thioester-reductase-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELSTYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDVTPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPETIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQRLIARHEILRTQYIVVDDEVRQRIVADVAVDFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYIINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEAVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPKKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPAQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQMEQDLKQYLNDHLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMHQNQQSLVALPDNLSELQKIVMSRYNLGVLEDSLSYRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: LS483324_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483324_3

818017-818099

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483324_3

>merge|LS483324|3|818017-818099|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LS483324|3|3|818017-818099|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483324.1\|SQE99319.1\|814218_815733_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	unknown	unknown	gnl\|CDD\|270328
LS483324.1\|SQE99322.1\|817325_817868_+\|5'-3'-deoxyribonucleotidase,-putative	unknown	unknown	gnl\|CDD\|226895
LS483324.1\|SQE99332.1\|829940_830702_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
LS483324.1\|SQE99313.1\|804968_805679_+\|Urea-amidolyase	unknown	unknown	gnl\|CDD\|224960
LS483324.1\|SQE99314.1\|805662_806667_+\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
LS483324.1\|SQE99329.1\|826350_827322_+\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
LS483324.1\|SQE99324.1\|819733_821239_-\|Di/tripeptide-permease-YjdL	unknown	unknown	gnl\|CDD\|225646
LS483324.1\|SQE99321.1\|816904_817186_-\|Protein-of-uncharacterised-function-(DUF3125)	unknown	unknown	unknown
LS483324.1\|SQE99328.1\|824127_826233_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
LS483324.1\|SQE99327.1\|823766_824165_+\|Nrdi	unknown	unknown	gnl\|CDD\|224694
LS483324.1\|SQE99326.1\|822099_822966_-\|Integral-membrane-domain-protein	unknown	unknown	gnl\|CDD\|223769
LS483324.1\|SQE99317.1\|811248_813027_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
LS483324.1\|SQE99318.1\|813248_814226_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	unknown	unknown	gnl\|CDD\|224050
LS483324.1\|SQE99330.1\|827987_829001_+\|FatD	unknown	unknown	gnl\|CDD\|226965
LS483324.1\|SQE99320.1\|815972_817031_+\|histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|235106
LS483324.1\|SQE99316.1\|809356_811234_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|223562
LS483324.1\|SQE99325.1\|821579_822080_-\|NADPH-dependent-preQ0-reductase	unknown	unknown	gnl\|CDD\|223851
LS483324.1\|SQE99331.1\|828987_829944_+\|Iron-compound-ABC-uptake-transporter-permease-protein	unknown	unknown	gnl\|CDD\|226964
LS483324.1\|SQE99315.1\|807140_809081_+\|glycerol-phosphate-lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
LS483324.1\|SQE99323.1\|818547_819465_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|224513

Protein	Function_ID	Function_description	E-value
LS483324.1\|SQE99319.1\|814218_815733_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
LS483324.1\|SQE99322.1\|817325_817868_+\|5'-3'-deoxyribonucleotidase,-putative	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.69885e-107
LS483324.1\|SQE99332.1\|829940_830702_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.31412e-150
LS483324.1\|SQE99313.1\|804968_805679_+\|Urea-amidolyase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
LS483324.1\|SQE99314.1\|805662_806667_+\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	3.65343e-143
LS483324.1\|SQE99329.1\|826350_827322_+\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
LS483324.1\|SQE99324.1\|819733_821239_-\|Di/tripeptide-permease-YjdL	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
LS483324.1\|SQE99318.1\|813248_814226_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
LS483324.1\|SQE99328.1\|824127_826233_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
LS483324.1\|SQE99327.1\|823766_824165_+\|Nrdi	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
LS483324.1\|SQE99326.1\|822099_822966_-\|Integral-membrane-domain-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
LS483324.1\|SQE99317.1\|811248_813027_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
LS483324.1\|SQE99323.1\|818547_819465_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	7.55646e-79
LS483324.1\|SQE99320.1\|815972_817031_+\|histidinol-phosphate-aminotransferase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
LS483324.1\|SQE99316.1\|809356_811234_+\|ABC-transporter	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
LS483324.1\|SQE99325.1\|821579_822080_-\|NADPH-dependent-preQ0-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
LS483324.1\|SQE99331.1\|828987_829944_+\|Iron-compound-ABC-uptake-transporter-permease-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
LS483324.1\|SQE99315.1\|807140_809081_+\|glycerol-phosphate-lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
LS483324.1\|SQE99330.1\|827987_829001_+\|FatD	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.27667e-149

>LS483324.1|SQE99322.1|817325_817868_+|5'-3'-deoxyribonucleotidase,-putative
MTRKSIAIDMDEVLADTLGEIIDVVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>LS483324.1|SQE99321.1|816904_817186_-|Protein-of-uncharacterised-function-(DUF3125)
MIFSQNLFRRPTPARLTRIEKILLQAHFRSVNYCQYNFVEHRTLISVPLPTYYSYLKFDKTSNILSFCSLKPIVILTPVGNGRVIHPTFKSAS
>LS483324.1|SQE99320.1|815972_817031_+|histidinol-phosphate-aminotransferase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPLHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>LS483324.1|SQE99319.1|814218_815733_+|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>LS483324.1|SQE99318.1|813248_814226_+|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>LS483324.1|SQE99317.1|811248_813027_+|ATP-dependent-DNA-helicase-RecQ
MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDELKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>LS483324.1|SQE99316.1|809356_811234_+|ABC-transporter
MEAYKIEHLNKSYADKIIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQTVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>LS483324.1|SQE99315.1|807140_809081_+|glycerol-phosphate-lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>LS483324.1|SQE99314.1|805662_806667_+|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRIGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>LS483324.1|SQE99313.1|804968_805679_+|Urea-amidolyase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>LS483324.1|SQE99323.1|818547_819465_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMSHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>LS483324.1|SQE99324.1|819733_821239_-|Di/tripeptide-permease-YjdL
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>LS483324.1|SQE99325.1|821579_822080_-|NADPH-dependent-preQ0-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>LS483324.1|SQE99326.1|822099_822966_-|Integral-membrane-domain-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>LS483324.1|SQE99327.1|823766_824165_+|Nrdi
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>LS483324.1|SQE99328.1|824127_826233_+|ribonucleotide-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>LS483324.1|SQE99329.1|826350_827322_+|ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>LS483324.1|SQE99330.1|827987_829001_+|FatD
MIMIIINLKGEKFVMKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>LS483324.1|SQE99331.1|828987_829944_+|Iron-compound-ABC-uptake-transporter-permease-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>LS483324.1|SQE99332.1|829940_830702_+|Iron-compound-ABC-uptake-transporter-ATP-binding-protein
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: LS483324_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483324_4

907656-907737

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483324_4

>merge|LS483324|4|907656-907737|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LS483324|4|4|907656-907737|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483324.1\|SQE99400.1\|903648_904365_+\|3-dehydroquinate-dehydratase-I-AroC-I	unknown	unknown	gnl\|CDD\|184156
LS483324.1\|SQE99405.1\|906558_906672_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483324.1\|SQE99397.1\|901413_902031_-\|LysE-type-translocator-protein	unknown	unknown	gnl\|CDD\|224198
LS483324.1\|SQE99416.1\|916180_917422_+\|Selenocysteine-lyase	unknown	unknown	gnl\|CDD\|131034
LS483324.1\|SQE99411.1\|911116_911938_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
LS483324.1\|SQE99408.1\|908839_909136_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LS483324.1\|SQE99413.1\|912719_913571_-\|membrane-protein	unknown	unknown	gnl\|CDD\|224946
LS483324.1\|SQE99403.1\|905600_905957_+\|Arsenate-reductase	unknown	unknown	gnl\|CDD\|239334
LS483324.1\|SQE99410.1\|910403_911099_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
LS483324.1\|SQE99399.1\|903078_903501_-\|Organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
LS483324.1\|SQE99398.1\|902185_902680_-\|lactococcal-prophage-ps3-protein-05	unknown	unknown	gnl\|CDD\|372596
LS483324.1\|SQE99406.1\|906673_907552_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|226395
LS483324.1\|SQE99415.1\|914758_916066_+\|Iron-sulfur-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
LS483324.1\|SQE99404.1\|906114_906495_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LS483324.1\|SQE99401.1\|904447_904987_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
LS483324.1\|SQE99407.1\|908457_908847_+\|DNA-primase/-small-primase-like-protein	unknown	unknown	gnl\|CDD\|224572
LS483324.1\|SQE99412.1\|912291_912486_+\|CsbD-like-protein	unknown	unknown	gnl\|CDD\|225777
LS483324.1\|SQE99409.1\|909385_910411_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
LS483324.1\|SQE99414.1\|913898_914660_+\|iron-sulfur-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
LS483324.1\|SQE99402.1\|905136_905457_-\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245

Protein	Function_ID	Function_description	E-value
LS483324.1\|SQE99400.1\|903648_904365_+\|3-dehydroquinate-dehydratase-I-AroC-I	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	5.95463e-148
LS483324.1\|SQE99414.1\|913898_914660_+\|iron-sulfur-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
LS483324.1\|SQE99397.1\|901413_902031_-\|LysE-type-translocator-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.40612e-61
LS483324.1\|SQE99416.1\|916180_917422_+\|Selenocysteine-lyase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LS483324.1\|SQE99411.1\|911116_911938_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
LS483324.1\|SQE99408.1\|908839_909136_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
LS483324.1\|SQE99413.1\|912719_913571_-\|membrane-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
LS483324.1\|SQE99403.1\|905600_905957_+\|Arsenate-reductase	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
LS483324.1\|SQE99410.1\|910403_911099_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
LS483324.1\|SQE99399.1\|903078_903501_-\|Organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
LS483324.1\|SQE99398.1\|902185_902680_-\|lactococcal-prophage-ps3-protein-05	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
LS483324.1\|SQE99406.1\|906673_907552_+\|Putative-cytosolic-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.72543e-74
LS483324.1\|SQE99415.1\|914758_916066_+\|Iron-sulfur-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	9.69519e-136
LS483324.1\|SQE99404.1\|906114_906495_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.28962e-69
LS483324.1\|SQE99401.1\|904447_904987_+\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
LS483324.1\|SQE99407.1\|908457_908847_+\|DNA-primase/-small-primase-like-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
LS483324.1\|SQE99412.1\|912291_912486_+\|CsbD-like-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
LS483324.1\|SQE99409.1\|909385_910411_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
LS483324.1\|SQE99402.1\|905136_905457_-\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24

>LS483324.1|SQE99406.1|906673_907552_+|Putative-cytosolic-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>LS483324.1|SQE99405.1|906558_906672_+|Uncharacterised-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>LS483324.1|SQE99404.1|906114_906495_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSKMIGE
>LS483324.1|SQE99403.1|905600_905957_+|Arsenate-reductase
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>LS483324.1|SQE99402.1|905136_905457_-|Thioredoxin
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>LS483324.1|SQE99401.1|904447_904987_+|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>LS483324.1|SQE99400.1|903648_904365_+|3-dehydroquinate-dehydratase-I-AroC-I
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>LS483324.1|SQE99399.1|903078_903501_-|Organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>LS483324.1|SQE99398.1|902185_902680_-|lactococcal-prophage-ps3-protein-05
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>LS483324.1|SQE99397.1|901413_902031_-|LysE-type-translocator-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLIF
>LS483324.1|SQE99407.1|908457_908847_+|DNA-primase/-small-primase-like-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>LS483324.1|SQE99408.1|908839_909136_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>LS483324.1|SQE99409.1|909385_910411_+|Methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>LS483324.1|SQE99410.1|910403_911099_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>LS483324.1|SQE99411.1|911116_911938_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>LS483324.1|SQE99412.1|912291_912486_+|CsbD-like-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>LS483324.1|SQE99413.1|912719_913571_-|membrane-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>LS483324.1|SQE99414.1|913898_914660_+|iron-sulfur-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>LS483324.1|SQE99415.1|914758_916066_+|Iron-sulfur-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>LS483324.1|SQE99416.1|916180_917422_+|Selenocysteine-lyase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

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Click the colored protein region to show detailed information

Crispr_ID: LS483324_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483324_5

1953702-1953844

Orphan

Consensus_repeat	Method
CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483324_5

>merge|LS483324|5|1953702-1953844|CRISPRCasFinder
CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCAAATATTAAATTATGGAGCGGAAGATAGGATTTGCACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA

>LS483324|5|5|1953702-1953844|CRISPRCasFinder
CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA	AATATTAAATTATGGAGCGGAAGATAGGATTTG
CACCTATACCTCGTTCCGGGAAGGAACGTGTTCTAAAAGTTGAACTACTCCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
LS483324.1\|SQF00351.1\|1947765_1948236_-\|tRNA-(cytosine34-2-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
LS483324.1\|SQF00347.1\|1945891_1946287_-\|membrane-protein	unknown	unknown	unknown
LS483324.1\|SQF00354.1\|1950234_1951692_-\|extracellular-glutamine-binding-protein	unknown	unknown	gnl\|CDD\|223836
LS483324.1\|SQF00355.1\|1951949_1953011_-\|Regulatory-protein	unknown	unknown	gnl\|CDD\|226167
LS483324.1\|SQF00359.1\|1963824_1965114_+\|Glutamate-1-semialdehyde-aminotransferase	unknown	unknown	gnl\|CDD\|183493
LS483324.1\|SQF00346.1\|1944310_1945696_-\|Fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LS483324.1\|SQF00365.1\|1971989_1972826_-\|Teichoic-acid-translocation-permease-protein-TagG	unknown	unknown	gnl\|CDD\|224596
LS483324.1\|SQF00363.1\|1969562_1970600_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
LS483324.1\|SQF00362.1\|1968718_1969261_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|184219
LS483324.1\|SQF00352.1\|1948240_1949368_-\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|272993
LS483324.1\|SQF00361.1\|1966691_1968428_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	unknown	unknown	gnl\|CDD\|224055
LS483324.1\|SQF00353.1\|1949519_1950248_-\|Glutamine-transport-ATP-binding-protein-glnQ	unknown	unknown	gnl\|CDD\|224051
LS483324.1\|SQF00350.1\|1947007_1947607_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|223440
LS483324.1\|SQF00357.1\|1962332_1963292_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240632
LS483324.1\|SQF00348.1\|1946405_1946699_+\|nitrogen-regulation-protein-NIFR3	unknown	unknown	unknown
LS483324.1\|SQF00349.1\|1946830_1946983_-\|putative-staphylococcal-protein	unknown	unknown	unknown
LS483324.1\|SQF00360.1\|1965355_1966501_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LS483324.1\|SQF00364.1\|1970751_1971729_+\|membrane-bound-metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
LS483324.1\|SQF00358.1\|1963288_1963744_-\|Thiol-peroxidase,-Bcp-type	unknown	unknown	gnl\|CDD\|224146
LS483324.1\|SQF00356.1\|1961789_1962236_-\|Peroxide-stress-regulator-PerR,-FUR-family	unknown	unknown	gnl\|CDD\|223806

Protein	Function_ID	Function_description	E-value
LS483324.1\|SQF00361.1\|1966691_1968428_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
LS483324.1\|SQF00351.1\|1947765_1948236_-\|tRNA-(cytosine34-2-O-)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.70324e-88
LS483324.1\|SQF00354.1\|1950234_1951692_-\|extracellular-glutamine-binding-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.14709e-98
LS483324.1\|SQF00355.1\|1951949_1953011_-\|Regulatory-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	1.65132e-122
LS483324.1\|SQF00363.1\|1969562_1970600_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	3.2966e-157
LS483324.1\|SQF00346.1\|1944310_1945696_-\|Fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LS483324.1\|SQF00365.1\|1971989_1972826_-\|Teichoic-acid-translocation-permease-protein-TagG	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	0.000164936
LS483324.1\|SQF00362.1\|1968718_1969261_-\|Putative-cytosolic-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	1.12131e-126
LS483324.1\|SQF00352.1\|1948240_1949368_-\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	6.7316e-180
LS483324.1\|SQF00356.1\|1961789_1962236_-\|Peroxide-stress-regulator-PerR,-FUR-family	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.09298e-56
LS483324.1\|SQF00353.1\|1949519_1950248_-\|Glutamine-transport-ATP-binding-protein-glnQ	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.22702e-152
LS483324.1\|SQF00350.1\|1947007_1947607_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|223440	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism].	1.49007e-10
LS483324.1\|SQF00357.1\|1962332_1963292_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240632	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family. Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	2.92376e-136
LS483324.1\|SQF00360.1\|1965355_1966501_+\|integral-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.84868e-85
LS483324.1\|SQF00364.1\|1970751_1971729_+\|membrane-bound-metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	2.87563e-40
LS483324.1\|SQF00358.1\|1963288_1963744_-\|Thiol-peroxidase,-Bcp-type	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	2.95961e-67
LS483324.1\|SQF00359.1\|1963824_1965114_+\|Glutamate-1-semialdehyde-aminotransferase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0

>LS483324.1|SQF00355.1|1951949_1953011_-|Regulatory-protein
MSNAKNADNKQFFSKILNSIGAGVVIALVPNALLGEVLKIFKSGNEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSFMLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRKITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLGIVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAYVLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELCKKFIPIYSNDIYKFEVPKQ
>LS483324.1|SQF00354.1|1950234_1951692_-|extracellular-glutamine-binding-protein
MKCLIRFILVLGLLISSAMVYINPTAHAEQDQTWEKIKERGELRVGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTGKIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKGTEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISNVKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISKYGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPMLVQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSLGLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLIVAAALYFVLTFVLTRIMNMIEGRLNASD
>LS483324.1|SQF00353.1|1949519_1950248_-|Glutamine-transport-ATP-binding-protein-glnQ
MPVIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEGNDLTEKGTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAPKLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
>LS483324.1|SQF00352.1|1948240_1949368_-|iron-sulfur-cluster-binding-protein
MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE
>LS483324.1|SQF00351.1|1947765_1948236_-|tRNA-(cytosine34-2-O-)-methyltransferase
MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN
>LS483324.1|SQF00350.1|1947007_1947607_-|glucosamine-6-phosphate-deaminase
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGKTSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA
>LS483324.1|SQF00349.1|1946830_1946983_-|putative-staphylococcal-protein
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
>LS483324.1|SQF00348.1|1946405_1946699_+|nitrogen-regulation-protein-NIFR3
MSGVINYQFRLNGVLIFKIEFLIYYYVWYTNQCFMLYKVILAVVDCSPQHRGFGMSASISCKLAGPQQSEIGSSISTDIANWGNGPQTQKLAESQLL
>LS483324.1|SQF00347.1|1945891_1946287_-|membrane-protein
MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPVIFKVIKLQLNLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVALNPYTTIVSAVLYILTAIATVEATKTKYRN
>LS483324.1|SQF00346.1|1944310_1945696_-|Fumarate-hydratase-class-II
MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVVYGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSNMNVNEVVSYVANMYLKDHQIDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEPALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCEIMLSESKKHILNLAIGGTAVGTGINAHPEFGDKVAHYISENTGYPFVSSENKFHALTAHDEVVQLHGTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPIEENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEAWIKPEDMVDPH
>LS483324.1|SQF00356.1|1961789_1962236_-|Peroxide-stress-regulator-PerR,-FUR-family
MSVEIESIEHELEESIASLRQAGVRITPQRQAILRYLISSHTHPTADEIYQALSPDFPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEQCGKIVDFQYPQLNEIERLAQHMTDFDVTHHRMEIYGVCKECQDK
>LS483324.1|SQF00357.1|1962332_1963292_-|D-3-phosphoglycerate-dehydrogenase
MTYMKVVGLNRMREVETELQQRFSDLDFKFYKKASEIPESDLADLDILVGYDGGINEAFLQRCPNLKWIAWFATGVNTLPLDYIADHGILLTNGKGVQAKQLSEYILAFILDDYKKMKLSYDNQRQHIYDSKITGKRLSGQTVLFLGTGAIATRTAKLAKAFNMNLIGLSKSGQNKDEFDEIYTIESLESTLPNADIIINALPETQETIHLLKKKHFELMKDEALFINIGRGSIVKEAVLIEVLKSKVIRHAYLDVFENEPLKPNHELYELENVTITAHITGNDYEAKYDLLDIFKNNLVNFLNKNGLIENEVDAKKGY
>LS483324.1|SQF00358.1|1963288_1963744_-|Thiol-peroxidase,-Bcp-type
MLQKGEQFPIFKLENQDGTVITNDTLKGKKAIIYFYPRDNTPTCTTEACDFRDNLEMFNDLDVAVYGISGDSKKKHQNFIGKHGLNFDLLVDEDFKLAKETGVYQLKKSFGKESMGIVRTTFIIDEQGKVLDVIEKVKVKTQIEELKNILG
>LS483324.1|SQF00359.1|1963824_1965114_+|Glutamate-1-semialdehyde-aminotransferase
MNFSESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKFIDYLQAYGPIITGHAHPHITKAIQEQAAKGVLFGTPTELEIEFSKKLRDAIPSLEKIRFVNSGTEAVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVITVPFNDINAYKEAIEFWGDEIAAVLVEPIVGNFGMVMPQPGFLEEVNEISHNNGTLVIYDEVITAFRFHYGAAQDLLGVIPDLTAFGKIVGGGLPIGGYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQDGVYEKLDSLGQQLEEGLLKLIEKHNITATINRIYGSLTLYFTDEKVTHYDQVEHSDGEAFGKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIKQTLKAADYAFSQMK
>LS483324.1|SQF00360.1|1965355_1966501_+|integral-membrane-protein
MNTNIRYSINLKGASLFLRLGARIFKTGIAIILAMSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL
>LS483324.1|SQF00361.1|1966691_1968428_-|Lipid-A-export-ATP-binding/permease-protein-MsbA
MIKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVELTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL
>LS483324.1|SQF00362.1|1968718_1969261_-|Putative-cytosolic-protein
MVRESIPKEGENIKIQSYKHDGKIHRVWSETTILKGTDHVVIGGNDHTLVTESDGRTWITREPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYHLLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKERYKKIRQY
>LS483324.1|SQF00363.1|1969562_1970600_-|A/G-specific-adenine-glycosylase
MYQQSSFKENLIHWFDENQREMPWRQTTNPYYIWLSEVMLQQTQVKTVIDYYHRFVERFPTVEVLSQASEDEVLKYWEGLGYYSRARNFHTAIKEVYDKYEGLVPKDPDQFKALKGVGPYTQAAVMSIAYNVPLATVDGNVFRVWSRLNDDYRDIKLQSTRKSYEQELLPYVTTEAGTFNQAMMELGALICTPKNPLCLFCPVQENCEAFDKGTFEKLPVKSKNVSKKVIEQSVFLIRNNQGQYLLQKRSEKLLHGMWQFPMFESEHARRKMTEKIGHDIQPVETPIFELKHQFTHLTWKIKVYAVSGAINIETLPDDMIWFDLSDRDQYTFPVPMSKIYQFING
>LS483324.1|SQF00364.1|1970751_1971729_+|membrane-bound-metal-dependent-hydrolase
MDTATHIAIGVGLTALATQDPAMASTFGATATTLIVGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFSGTNPFHVWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFTVLCIGIVLWVIGLHPFAVFFPIIALLIIYYMIRFKMRAVIKQQALKAIQQEHHPVKVFVAPTIKFMEWRVAIQTDAHDYVGKAYGRNVVFSDKVERQTLSTDSILWKVKGNKDIRTFLNFSSIYRWQTTTLADGSTEIRLIDLRYLKNDHYSFVAIAHVTNDNVIDHSYIGWVFTEDKLQRKLYAK
>LS483324.1|SQF00365.1|1971989_1972826_-|Teichoic-acid-translocation-permease-protein-TagG
MLDNIILYFKNLPHTKRYVTERLKQSWKSFLIVLAACLILIIASETLFSFSHLTDVKEVRWLFRIIVLIVFAVVMFTIYISYHHYMNDFLVTKLFNISAATPVVIMSILSFIMLVILTMISALVKPVNFETSYIALFYFIVMATIFVGLISVTFGLIRLLTEKINIIFYGVCVLCFLLLPIIFIPNPNHVFINHILMLNPMYYIVNGIAQSIIFGISSMENIPYHFYFILFLCLIAAVNFVLARYTTHAIYNKTSKVTQTDNQQDVSNDSTDEADTSS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483324_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483324_6

2239686-2239842

Orphan

Consensus_repeat	Method
CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	PILER-CR

2 spacers

csa3

The CRISPR arrays of LS483324_6

>merge|LS483324|6|2239686-2239842|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

>LS483324|6|1|2239686-2239842|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGC	GTAGCATCCAACTGTATTCCTCTAT
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTA	GCGCAGGCGCTCCTAC
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483324.1\|SQF00642.1\|2232514_2233888_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
LS483324.1\|SQF00645.1\|2236196_2236862_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
LS483324.1\|SQF00639.1\|2230170_2230881_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
LS483324.1\|SQF00647.1\|2237335_2238316_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151
LS483324.1\|SQF00652.1\|2244450_2245233_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LS483324.1\|SQF00650.1\|2243204_2243300_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483324.1\|SQF00655.1\|2249523_2251656_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LS483324.1\|SQF00644.1\|2234822_2235761_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LS483324.1\|SQF00641.1\|2231644_2232058_-\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|225556
LS483324.1\|SQF00646.1\|2237013_2237334_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LS483324.1\|SQF00640.1\|2231001_2231445_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	unknown	unknown	gnl\|CDD\|223854
LS483324.1\|SQF00654.1\|2247950_2249489_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LS483324.1\|SQF00653.1\|2245464_2247270_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483324.1\|SQF00658.1\|2253526_2260948_-\|putative-surface-anchored-protein	unknown	unknown	gnl\|CDD\|275089
LS483324.1\|SQF00648.1\|2238581_2239673_+\|Lytic-regulatory-protein	unknown	unknown	unknown
LS483324.1\|SQF00649.1\|2241380_2242517_-\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887
LS483324.1\|SQF00651.1\|2243525_2244383_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LS483324.1\|SQF00657.1\|2252101_2253208_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LS483324.1\|SQF00643.1\|2234561_2234792_-\|membrane-protein	unknown	unknown	unknown
LS483324.1\|SQF00656.1\|2251667_2252102_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014

Protein	Function_ID	Function_description	E-value
LS483324.1\|SQF00642.1\|2232514_2233888_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
LS483324.1\|SQF00645.1\|2236196_2236862_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
LS483324.1\|SQF00639.1\|2230170_2230881_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
LS483324.1\|SQF00647.1\|2237335_2238316_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
LS483324.1\|SQF00652.1\|2244450_2245233_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
LS483324.1\|SQF00655.1\|2249523_2251656_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.01001e-67
LS483324.1\|SQF00644.1\|2234822_2235761_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
LS483324.1\|SQF00641.1\|2231644_2232058_-\|thiol-disulfide-oxidoreductase	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
LS483324.1\|SQF00646.1\|2237013_2237334_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
LS483324.1\|SQF00640.1\|2231001_2231445_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
LS483324.1\|SQF00654.1\|2247950_2249489_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
LS483324.1\|SQF00658.1\|2253526_2260948_-\|putative-surface-anchored-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	7.39044e-110
LS483324.1\|SQF00653.1\|2245464_2247270_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483324.1\|SQF00649.1\|2241380_2242517_-\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	4.78584e-06
LS483324.1\|SQF00651.1\|2243525_2244383_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.28483e-59
LS483324.1\|SQF00657.1\|2252101_2253208_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LS483324.1\|SQF00656.1\|2251667_2252102_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62

>LS483324.1|SQF00648.1|2238581_2239673_+|Lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>LS483324.1|SQF00647.1|2237335_2238316_+|Cobalt-zinc-cadmium-resistance-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>LS483324.1|SQF00646.1|2237013_2237334_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>LS483324.1|SQF00645.1|2236196_2236862_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>LS483324.1|SQF00644.1|2234822_2235761_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>LS483324.1|SQF00643.1|2234561_2234792_-|membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>LS483324.1|SQF00642.1|2232514_2233888_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>LS483324.1|SQF00641.1|2231644_2232058_-|thiol-disulfide-oxidoreductase
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>LS483324.1|SQF00640.1|2231001_2231445_-|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>LS483324.1|SQF00639.1|2230170_2230881_+|Purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>LS483324.1|SQF00649.1|2241380_2242517_-|SAP-domain-containing-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIFKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKTDVKDYDNARKYSNVYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASDLYERLIYNKNLSNNIIFELFKKDTQDYSDLEEQLIEKFINYVVSYVKKEGWSNTLLELSKMLENGYTIDKEEFKKEDEYLSRYIITDINYLKNLESKIGVAIDSRNGEIHLVLDDDSLDKLIKNQKNDNEV
>LS483324.1|SQF00650.1|2243204_2243300_+|Uncharacterised-protein
MKKQELKQSIGVNVFKDGSVATKKRSLQFKS
>LS483324.1|SQF00651.1|2243525_2244383_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>LS483324.1|SQF00652.1|2244450_2245233_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>LS483324.1|SQF00653.1|2245464_2247270_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>LS483324.1|SQF00654.1|2247950_2249489_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LS483324.1|SQF00655.1|2249523_2251656_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSSYLTVNPLLPDSDISYVAQFLNTKSTFQEIHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSNLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRSKFLERIKKQFI
>LS483324.1|SQF00656.1|2251667_2252102_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>LS483324.1|SQF00657.1|2252101_2253208_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>LS483324.1|SQF00658.1|2253526_2260948_-|putative-surface-anchored-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPTAQPAAPANQGQPAVQPANQGGQANPAGGAAQPNTQPAGQGNQADPNNAAQAQPGNQATPANQAGQGNNQATPNNNATPANQTQPANAPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYTLINNGKIGFVNSELRRSDMFDKNNPQNYQARGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKSDQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTAPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEIFKIENITDSTQTKMDAYKEVKQAATARKAQNATVSNATDEEVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQARVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSAVTTAKDNSIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNASTTEEQQAAKEKVDQAVLSANADIDNAAANTDVDNVKTTNEATIAAITPDANVKPTAKQAIADKVQAQETAIDANNGATTEEKAAAKQQVQTEKTTADTAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAIATKANERKTAIAQTQDITAEEIAAANVNVDNAVTEANSNIEAANSQNDVDQAKTTGENSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKKAAKDEIDQLQATQTNVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDYIQIDSTEKQKAIEELETALDQIEAGVNVNADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNDKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKAVTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGSAANNKATQNDGANASPATVSNGSNSANQDMLNVTKPEENKAKAKSAQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483324_1	1.1\|214967\|34\|LS483324\|CRISPRCasFinder	214967-215000	34	LS483324.1	1479884-1479917	0	1.0
LS483324_1	1.1\|214967\|34\|LS483324\|CRISPRCasFinder	214967-215000	34	LS483324.1	1259445-1259478	1	0.971
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	338193-338224	1	0.969
LS483324_2	2.2\|338137\|33\|LS483324\|CRISPRCasFinder	338137-338169	33	LS483324.1	1259514-1259546	1	0.97
LS483324_2	2.2\|338137\|33\|LS483324\|CRISPRCasFinder	338137-338169	33	LS483324.1	1259570-1259602	1	0.97
LS483324_2	2.2\|338137\|33\|LS483324\|CRISPRCasFinder	338137-338169	33	LS483324.1	2793141-2793173	1	0.97
LS483324_4	4.1\|907680\|34\|LS483324\|CRISPRCasFinder	907680-907713	34	LS483324.1	1479884-1479917	1	0.971
LS483324_1	1.1\|214967\|34\|LS483324\|CRISPRCasFinder	214967-215000	34	LS483324.1	1392386-1392419	2	0.941
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	214923-214954	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	907726-907757	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	956858-956889	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	1072823-1072854	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	1259343-1259374	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	1392283-1392314	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	1479989-1480020	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	1480047-1480078	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	1524544-1524575	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	1989252-1989283	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	2389029-2389060	2	0.938
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	LS483324.1	2678293-2678324	2	0.938
LS483324_4	4.1\|907680\|34\|LS483324\|CRISPRCasFinder	907680-907713	34	LS483324.1	1259445-1259478	2	0.941

1. spacer 1.1|214967|34|LS483324|CRISPRCasFinder matches to position: 1479884-1479917, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 1.1|214967|34|LS483324|CRISPRCasFinder matches to position: 1259445-1259478, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.*************

3. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 338193-338224, mismatch: 1, identity: 0.969

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggtaa	Protospacer
**.*****************************

4. spacer 2.2|338137|33|LS483324|CRISPRCasFinder matches to position: 1259514-1259546, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

5. spacer 2.2|338137|33|LS483324|CRISPRCasFinder matches to position: 1259570-1259602, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

6. spacer 2.2|338137|33|LS483324|CRISPRCasFinder matches to position: 2793141-2793173, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcctacaataatg	Protospacer
********************** **********

7. spacer 4.1|907680|34|LS483324|CRISPRCasFinder matches to position: 1479884-1479917, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

8. spacer 1.1|214967|34|LS483324|CRISPRCasFinder matches to position: 1392386-1392419, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atggagcccaacaaagagaaattggattcccaat	Protospacer
****. ****************************

9. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 214923-214954, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

10. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 907726-907757, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

11. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 956858-956889, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

12. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 1072823-1072854, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

13. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 1259343-1259374, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

14. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 1392283-1392314, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

15. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 1479989-1480020, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

16. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 1480047-1480078, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

17. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 1524544-1524575, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

18. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 1989252-1989283, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

19. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 2389029-2389060, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

20. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to position: 2678293-2678324, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

21. spacer 4.1|907680|34|LS483324|CRISPRCasFinder matches to position: 1259445-1259478, mismatch: 2, identity: 0.941

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaacttctctttgttggggcccat	Protospacer
****.********.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_KY270853	Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence	37339-37370	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_KX839207	Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence	106205-106236	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	319442-319473	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP025467	Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence	229082-229113	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP019048	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence	17455-17486	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NC_018107	Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence	206727-206758	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP022441	Klebsiella sp. LY plasmid unnamed3, complete sequence	191028-191059	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	KU318421	Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence	37881-37912	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NC_023911	Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence	256422-256453	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP025964	Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence	172857-172888	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP038277	Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence	221440-221471	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP024641	Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence	281239-281270	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	CP027603	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence	71493-71524	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP046614	Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence	37800-37831	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP026014	Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence	118204-118235	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP026019	Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence	275327-275358	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_MF344561	Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence	38947-38978	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_MF344566	Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence	37553-37584	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_MF344562	Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence	40101-40132	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_MF344567	Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence	37881-37912	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_MF344563	Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence	37792-37823	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_MF344564	Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence	38947-38978	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP026369	Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence	83124-83155	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NZ_CP028952	Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence	436045-436076	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	MN661402	Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence	222862-222893	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	MK599315	Pseudomonas phage PA1C, complete genome	261289-261320	7	0.781
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	NC_010371	Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence	149144-149175	10	0.688
LS483324_2	2.1\|338082\|32\|LS483324\|CRISPRCasFinder	338082-338113	32	MN103543	Pseudomonas phage vB_PaeM_PS119XW, complete genome	261900-261931	10	0.688

1. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_KY270853 (Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

2. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_KX839207 (Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

3. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP021328 (Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

4. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP025467 (Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

5. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP019048 (Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

6. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NC_018107 (Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

7. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP022441 (Klebsiella sp. LY plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

8. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to KU318421 (Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

9. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NC_023911 (Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

10. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP025964 (Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

11. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP038277 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

12. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP024641 (Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

13. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to CP027603 (UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

14. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP046614 (Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

15. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP026014 (Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

16. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP026019 (Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

17. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_MF344561 (Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

18. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_MF344566 (Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

19. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_MF344562 (Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

20. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_MF344567 (Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

21. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_MF344563 (Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

22. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_MF344564 (Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

23. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP026369 (Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

24. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NZ_CP028952 (Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

25. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

26. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa--	CRISPR spacer
gaaacaattgcgaaaagaaattct--gagtaata	Protospacer
 *** **** **************  ..****

27. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 10, identity: 0.688

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
gaaagaatttcaaaaagaaatactctttagca	Protospacer
 **********.********* ** .  .  *

28. spacer 2.1|338082|32|LS483324|CRISPRCasFinder matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 10, identity: 0.688

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
gaaacaattgcgaaaagaaattctgagcaata	Protospacer
 *** **** **************. . .  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12234 : 70029

Staphylococcus_phage(33.33%)

bacteriocin,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE98584.1\|12234_13521_+\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-88	51.2
SQE98585.1\|14171_14867_+	AzlC	NA	NA	NA	NA
SQE98586.1\|14863_15193_+	branched-chain amino acid transport family protein	NA	NA	NA	NA
SQE98587.1\|15555_16524_+	Homoserine O-acetyltransferase	NA	NA	NA	NA
SQE98588.1\|16832_17756_+	Predicted membrane protein	NA	NA	NA	NA
SQE98589.1\|17770_19738_+	phosphoesterase, DHH family protein	NA	NA	NA	NA
SQE98590.1\|19734_20181_+	50S ribosomal protein L9	NA	NA	NA	NA
SQE98591.1\|20212_21613_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.4e-111	48.1
SQE98592.1\|21890_23174_+	adenylosuccinate synthase	L7Y4J5	Megavirus	1.8e-68	34.6
SQE98593.1\|24376_25078_+	Two-component response regulator	W8CYM9	Bacillus_phage	3.5e-42	39.2
SQE98594.1\|25090_26917_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.6e-30	31.3
SQE98595.1\|26909_28244_+	YycH protein	NA	NA	NA	NA
SQE98596.1\|28244_29033_+	yycH family protein	NA	NA	NA	NA
SQE98597.1\|29428_30229_+	Zn-dependent hydrolase (beta-lactamase superfamily)	A0A0C5AJ83	Bacteriophage	1.0e-37	35.9
SQE98598.1\|30456_32775_+	5'-nucleotidase	NA	NA	NA	NA
SQE98599.1\|33142_33622_+	LSU m3Psi1915 methyltransferase RlmH	NA	NA	NA	NA
SQE98600.1\|34137_34650_-	Uncharacterised protein	NA	NA	NA	NA
SQE98601.1\|34888_35404_+	Uncharacterised protein	NA	NA	NA	NA
SQE98602.1\|35598_36249_-	alkylmercury lyase MerB	NA	NA	NA	NA
SQE98603.1\|36330_37974_-	Mercuric reductase	A0A2K5B2C5	Erysipelothrix_phage	1.7e-50	29.4
SQE98604.1\|38031_38367_-	mercuric transporter	NA	NA	NA	NA
SQE98605.1\|38504_39185_-	Mercury transport protein	NA	NA	NA	NA
SQE98606.1\|39181_39535_-	AhpC/TSA family protein	NA	NA	NA	NA
SQE98607.1\|39551_39959_-	mercuric resistance operon regulatory protein MerR	NA	NA	NA	NA
SQE98608.1\|40258_41605_-	regulatory protein	NA	NA	NA	NA
SQE98609.1\|41887_42562_+	Transposase for insertion sequence-like element IS431mec	A0A0N9RU54	Staphylococcus_phage	2.0e-127	99.1
SQE98610.1\|42719_43244_+	replication initiation protein	NA	NA	NA	NA
SQE98611.1\|43373_43553_+	putative replication initiation protein Rep domain protein	NA	NA	NA	NA
SQE98612.1\|44137_44326_+	membrane protein	NA	NA	NA	NA
SQE98613.1\|44342_44483_+	Uncharacterised protein	NA	NA	NA	NA
SQE98614.1\|44986_45418_+	Uncharacterised protein	NA	NA	NA	NA
SQE98615.1\|46143_46311_+	Uncharacterised protein	NA	NA	NA	NA
SQE98616.1\|46873_47692_-\|transposase	transposase (pseudogene)	NA	NA	NA	NA
SQE98617.1\|48087_52281_+	putative biofilm-associated protein	NA	NA	NA	NA
SQE98618.1\|52692_52983_+\|transposase	transposase (pseudogene)	NA	NA	NA	NA
SQE98619.1\|53050_53791_-\|transposase	IS1181 transposase	NA	NA	NA	NA
SQE98620.1\|54242_55214_-	quinone oxidoreductase, YhdH/YhfP family protein	NA	NA	NA	NA
SQE98621.1\|55337_55757_+	regulatory protein MarR	NA	NA	NA	NA
SQE98622.1\|56042_56618_-	DNA-invertase hin	A0A0A7NPV4	Enterobacteria_phage	2.9e-42	51.7
SQE98623.1\|56884_58930_+	cation exporting ATPase	E4ZFI9	Streptococcus_phage	2.3e-65	29.2
SQE98624.1\|58944_60378_+	multicopper oxidase	NA	NA	NA	NA
SQE98625.1\|60444_62091_-\|transposase	transposase	A0ZS58	Staphylococcus_virus	1.3e-289	98.2
SQE98626.1\|62453_64634_-	cadmium translocating P-type ATPase CadA, putative	E4ZFI9	Streptococcus_phage	9.3e-251	63.7
SQE98627.1\|64626_64992_-	cadmium efflux system repressor, putative	E4ZFI8	Streptococcus_phage	8.5e-24	47.8
SQE98628.1\|65229_65607_-	Transposase for transposon Tn554	NA	NA	NA	NA
SQE98629.1\|65701_66376_+\|transposase	IS431 transposase	A0A0N9RU54	Staphylococcus_phage	1.3e-113	88.4
SQE98630.1\|66410_66623_-	membrane protein	NA	NA	NA	NA
SQE98631.1\|66960_67278_+	recombinase	NA	NA	NA	NA
SQE98632.1\|67338_67653_+	arsenical resistance operon repressor	A0A2H4PQT4	Staphylococcus_phage	4.7e-39	73.1
SQE98633.1\|67652_67871_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	7.5e-20	81.4
SQE98634.1\|67902_68943_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	8.0e-152	81.5
SQE98635.1\|68960_69356_+	arsenate reductase	A0A2H4PQT9	Staphylococcus_phage	8.5e-62	86.3
SQE98636.1\|69735_70029_+\|bacteriocin	bacteriocin, lactococcin 972 family protein	NA	NA	NA	NA

DBSCAN-SWA_2

796180 : 804001

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE99302.1\|796180_797236_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
SQE99303.1\|797235_797922_-	Response regulator SaeR	NA	NA	NA	NA
SQE99304.1\|797896_798370_-	DoxX family protein	NA	NA	NA	NA
SQE99305.1\|798712_799153_-	lipoprotein	NA	NA	NA	NA
SQE99306.1\|799432_800017_-	Uncharacterised protein	NA	NA	NA	NA
SQE99307.1\|800115_800829_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
SQE99308.1\|800832_801252_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
SQE99309.1\|801253_801922_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
SQE99310.1\|802272_802866_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
SQE99311.1\|802849_804001_+	Para-aminobenzoate synthetase component I	S4VNU7	Pandoravirus	3.5e-23	36.1

DBSCAN-SWA_3

815972 : 830702

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE99320.1\|815972_817031_+	histidinol-phosphate aminotransferase	A0A0H3TLT9	Faustovirus	1.5e-20	27.3
SQE99321.1\|816904_817186_-	Protein of uncharacterised function (DUF3125)	NA	NA	NA	NA
SQE99322.1\|817325_817868_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
SQE99323.1\|818547_819465_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
SQE99324.1\|819733_821239_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
SQE99325.1\|821579_822080_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
SQE99326.1\|822099_822966_-	Integral membrane domain protein	NA	NA	NA	NA
SQE99327.1\|823766_824165_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
SQE99328.1\|824127_826233_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
SQE99329.1\|826350_827322_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
SQE99330.1\|827987_829001_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
SQE99331.1\|828987_829944_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
SQE99332.1\|829940_830702_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_4

1074385 : 1082858

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQE99559.1\|1074385_1074868_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
SQE99560.1\|1074854_1075979_+	Phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
SQE99561.1\|1075982_1076687_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
SQE99562.1\|1076686_1076950_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
SQE99563.1\|1076951_1077623_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
SQE99564.1\|1077615_1079805_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.5e-141	39.8
SQE99565.1\|1079783_1081268_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
SQE99566.1\|1081260_1082289_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
SQE99567.1\|1082291_1082858_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_5

1339330 : 1357279

Staphylococcus_phage(54.17%)

integrase,portal,head,terminase

attL 1333054:1333071|attR 1359270:1359287

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1333054:1333071	attL	NA	NA	NA	NA
SQE99798.1\|1339330_1340458_-\|integrase	integrase family protein	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
SQE99799.1\|1340510_1341206_-	host cell surface-exposed lipofamily protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
SQE99800.1\|1341217_1341601_-	Uncharacterised protein	NA	NA	NA	NA
SQE99801.1\|1341747_1342140_-	helix-turn-helix family protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
SQE99802.1\|1342307_1342526_+	regulatory protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
SQE99803.1\|1342552_1342828_+	Uncharacterised protein	NA	NA	NA	NA
SQE99804.1\|1342832_1342967_+	Uncharacterised protein	NA	NA	NA	NA
SQE99805.1\|1342997_1343117_+	Uncharacterised protein	NA	NA	NA	NA
SQE99806.1\|1343092_1343263_+	Uncharacterised protein	Q4ZDZ8	Staphylococcus_virus	2.4e-21	89.3
SQE99807.1\|1343251_1343458_-	Uncharacterised protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
SQE99808.1\|1343518_1344202_+	prophage, antirepressor, putative	A9CR56	Staphylococcus_phage	5.2e-107	85.6
SQE99809.1\|1344300_1344462_+	phage protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
SQE99810.1\|1344548_1344866_+	phage protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
SQE99811.1\|1344855_1345122_+	phage protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
SQE99812.1\|1345126_1345663_+	glycosyl hydrolases 17 family protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
SQE99813.1\|1345663_1346443_+	bacterial dnaA family protein	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
SQE99814.1\|1346469_1347018_+	Single stranded DNA-binding protein,phage-associated	A7TWM8	Staphylococcus_phage	1.1e-91	92.9
SQE99815.1\|1347030_1347933_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
SQE99816.1\|1347933_1348224_+	PVL orf 51-like protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
SQE99817.1\|1348238_1348403_+	phage protein	A0A0E3T9L7	Staphylococcus_phage	1.1e-18	88.9
SQE99818.1\|1348402_1348714_+	Uncharacterised protein	NA	NA	NA	NA
SQE99819.1\|1348706_1349237_+	mazG nucleotide pyrophosphohydrolase domain protein	A0A1P8VVP1	Streptococcus_phage	5.2e-22	38.2
SQE99820.1\|1349482_1349947_+	Uncharacterised protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
SQE99821.1\|1349947_1350181_+	Uncharacterised protein	NA	NA	NA	NA
SQE99822.1\|1350223_1350712_+	sigma-70, region 4 family protein	R9TMH4	Paenibacillus_phage	4.3e-07	27.7
SQE99823.1\|1350864_1351293_+	homeo-like domain protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
SQE99824.1\|1351279_1352554_+\|terminase	phage terminase, large subunit, PBSX family	Q4ZE37	Staphylococcus_virus	1.9e-195	76.4
SQE99825.1\|1352566_1354015_+\|portal	phage portal protein, SPP1 family	Q4ZE36	Staphylococcus_virus	7.4e-196	69.4
SQE99826.1\|1354004_1355537_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZE35	Staphylococcus_virus	1.9e-109	61.6
SQE99827.1\|1355542_1355665_+	Uncharacterised protein	NA	NA	NA	NA
SQE99828.1\|1355824_1356037_+	Phage protein	NA	NA	NA	NA
SQE99829.1\|1356156_1356426_+	Phage protein	NA	NA	NA	NA
SQE99830.1\|1356438_1356561_+	Uncharacterised protein	NA	NA	NA	NA
SQE99831.1\|1356817_1357279_+	Uncharacterised protein	A0A1J0MF61	Staphylococcus_phage	3.8e-29	46.0
1359270:1359287	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1634014 : 1642344

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF00067.1\|1634014_1634800_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
SQF00068.1\|1634925_1635816_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
SQF00069.1\|1635825_1637172_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
SQF00070.1\|1637285_1638386_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
SQF00071.1\|1638388_1639066_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
SQF00072.1\|1639196_1640303_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
SQF00073.1\|1640526_1642344_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3

DBSCAN-SWA_7

1710007 : 1719038

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF00143.1\|1710007_1710514_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	7.9e-28	50.0
SQF00144.1\|1710535_1712809_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	5.2e-63	28.8
SQF00145.1\|1713011_1715291_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
SQF00146.1\|1715565_1715826_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
SQF00147.1\|1715844_1716984_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
SQF00148.1\|1717006_1718032_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQF00149.1\|1718033_1719038_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1844395 : 1913059

Staphylococcus_phage(95.74%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF00254.1\|1844395_1850956_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.6e-309	99.0
SQF00255.1\|1851281_1851593_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
SQF00256.1\|1851614_1854032_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
SQF00257.1\|1854319_1855501_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
SQF00258.1\|1855610_1856564_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
SQF00259.1\|1856560_1857124_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
SQF00260.1\|1857243_1857645_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
SQF00261.1\|1858216_1859044_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
SQF00262.1\|1859277_1860279_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
SQF00263.1\|1860400_1860865_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
SQF00264.1\|1860877_1862059_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
SQF00265.1\|1862069_1862702_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
SQF00266.1\|1862708_1863752_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	1.6e-195	98.5
SQF00267.1\|1864232_1865735_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
SQF00268.1\|1866257_1866572_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
SQF00269.1\|1866571_1867864_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	9.4e-227	99.3
SQF00270.1\|1867950_1868805_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
SQF00271.1\|1869080_1869305_-	putative staphylococcal protein	NA	NA	NA	NA
SQF00272.1\|1870085_1870529_+	comK family protein	NA	NA	NA	NA
SQF00273.1\|1870515_1870959_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
SQF00274.1\|1871254_1871890_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
SQF00275.1\|1872329_1873043_-	Transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
SQF00276.1\|1873302_1873605_+	membrane protein	NA	NA	NA	NA
SQF00277.1\|1873860_1874226_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
SQF00278.1\|1874222_1874576_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
SQF00279.1\|1874958_1875792_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
SQF00280.1\|1876003_1876912_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
SQF00281.1\|1877036_1878230_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
SQF00282.1\|1878601_1880194_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
SQF00283.1\|1880571_1881342_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	1.1e-142	98.8
SQF00284.1\|1881322_1881802_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
SQF00285.1\|1881861_1882119_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
SQF00286.1\|1882115_1883117_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-186	97.9
SQF00287.1\|1883121_1884600_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.1e-283	97.4
SQF00288.1\|1884758_1885241_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	4.6e-78	97.9
SQF00289.1\|1885552_1886167_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	9.5e-36	84.8
SQF00290.1\|1886247_1887243_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	6.2e-77	98.8
SQF00291.1\|1887318_1887945_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	5.3e-90	93.8
SQF00292.1\|1887985_1888327_+	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
SQF00293.1\|1888427_1889000_+	Uncharacterised protein	A0A2H4PQN4	Staphylococcus_phage	1.1e-25	96.6
SQF00294.1\|1889196_1889754_-	Domain of uncharacterised function (DUF955)	A0A2H4PQN8	Staphylococcus_phage	2.7e-77	96.2
SQF00295.1\|1890126_1890303_-	Uncharacterised protein	NA	NA	NA	NA
SQF00296.1\|1890313_1890502_-	Uncharacterised protein	NA	NA	NA	NA
SQF00297.1\|1891411_1891666_-	exported protein	NA	NA	NA	NA
SQF00298.1\|1891734_1891854_-	putative protein with DUF1433	NA	NA	NA	NA
SQF00299.1\|1891853_1892297_-	exported protein	NA	NA	NA	NA
SQF00300.1\|1892296_1892740_-	putative protein with DUF1433	NA	NA	NA	NA
SQF00301.1\|1893164_1895702_+	hyaluronate lyase	NA	NA	NA	NA
SQF00302.1\|1895825_1896203_-	exported protein	NA	NA	NA	NA
SQF00303.1\|1896408_1896849_-	putative protein with DUF1433	NA	NA	NA	NA
SQF00304.1\|1896893_1898507_+	pathogenicity island protein	NA	NA	NA	NA
SQF00305.1\|1898521_1898821_+	ESAT-6 family protein	NA	NA	NA	NA
SQF00306.1\|1898947_1900192_-	restriction-modification system, S subunit	A0A2H4PQP5	Staphylococcus_phage	1.2e-125	62.1
SQF00307.1\|1900184_1901741_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	2.6e-287	99.0
SQF00308.1\|1902103_1902823_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
SQF00309.1\|1902973_1903690_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	2.4e-131	99.2
SQF00310.1\|1903847_1904567_-\|protease	Serine protease splD	A0A2H4PQP9	Staphylococcus_phage	5.1e-129	99.2
SQF00311.1\|1904687_1905407_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
SQF00312.1\|1905464_1906187_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	6.4e-132	100.0
SQF00313.1\|1906311_1907019_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.7e-130	99.6
SQF00314.1\|1907982_1908552_+	beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	2.6e-51	62.6
SQF00315.1\|1909025_1909298_-	truncated BsaG protein	A0A2H4PQH0	Staphylococcus_phage	2.9e-29	78.8
SQF00316.1\|1909499_1909973_+	Uncharacterised protein	NA	NA	NA	NA
SQF00317.1\|1909977_1910769_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
SQF00318.1\|1911138_1912122_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
SQF00319.1\|1912123_1913059_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0

DBSCAN-SWA_9

1999197 : 2149405

168

Staphylococcus_phage(82.52%)

transposase,integrase,holin,terminase,tRNA,capsid,portal,head,tail,protease

attL 2096898:2096917|attR 2110824:2110843

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF00394.1\|1999197_2000625_-\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	NA	NA	NA	NA
SQF00395.1\|2000637_2002095_-\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
SQF00396.1\|2002096_2002399_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
SQF00397.1\|2002765_2004304_+	Sodium/proline symporter	NA	NA	NA	NA
SQF00398.1\|2004392_2005592_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA
SQF00399.1\|2005604_2007608_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
SQF00400.1\|2007611_2009804_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
SQF00401.1\|2009800_2010493_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA
SQF00402.1\|2010665_2010968_-	His repressor	NA	NA	NA	NA
SQF00403.1\|2011076_2012372_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
SQF00404.1\|2013231_2014398_+	Staphopain A precursor	NA	NA	NA	NA
SQF00405.1\|2014428_2014755_+\|protease	putative cysteine protease inhibitor (Staphostatin A)	NA	NA	NA	NA
SQF00406.1\|2015046_2015220_-	Uncharacterised protein	NA	NA	NA	NA
SQF00407.1\|2015200_2015803_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
SQF00408.1\|2016073_2016895_-	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	8.8e-69	52.3
SQF00409.1\|2016887_2018357_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
SQF00410.1\|2018540_2019617_+	nitric-oxide synthase	NA	NA	NA	NA
SQF00411.1\|2019636_2020431_+	ACT domain protein	NA	NA	NA	NA
SQF00412.1\|2020620_2022183_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA
SQF00413.1\|2022387_2023485_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	2.5e-47	34.9
SQF00414.1\|2023856_2024417_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
SQF00415.1\|2024469_2025399_+	inorganic pyrophosphatase	NA	NA	NA	NA
SQF00416.1\|2025818_2027198_+	Aldehyde dehydrogenase	NA	NA	NA	NA
SQF00417.1\|2027317_2028346_-	6-phosphogluconolactonase	NA	NA	NA	NA
SQF00418.1\|2028615_2029017_+	yolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
SQF00419.1\|2029589_2029763_-	exported protein	NA	NA	NA	NA
SQF00420.1\|2030141_2031254_+	choloylglycine hydrolase	NA	NA	NA	NA
SQF00421.1\|2031310_2032153_-	exported protein	NA	NA	NA	NA
SQF00422.1\|2032149_2032707_-	Predicted membrane protein	NA	NA	NA	NA
SQF00423.1\|2032766_2033291_-	membrane protein	NA	NA	NA	NA
SQF00424.1\|2033411_2033975_+	Thioredoxin	NA	NA	NA	NA
SQF00425.1\|2034040_2034781_-	ABC-2 transporter family protein	NA	NA	NA	NA
SQF00426.1\|2034780_2035653_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
SQF00427.1\|2035649_2036330_-	membrane protein	NA	NA	NA	NA
SQF00428.1\|2036330_2037227_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
SQF00429.1\|2037223_2037604_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQF00430.1\|2037862_2038039_-	membrane protein	NA	NA	NA	NA
SQF00431.1\|2038579_2039866_+	Aspartate aminotransferase	NA	NA	NA	NA
SQF00432.1\|2040144_2040435_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA
SQF00433.1\|2040445_2042509_-	MHC class II analog (pseudogene)	NA	NA	NA	NA
SQF00434.1\|2042894_2043095_+	beta-hemolysin	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
SQF00435.1\|2044269_2044620_-	Involved in expression of fibrinogen binding protein, phage associated	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
SQF00436.1\|2045129_2045426_-	amidase	R9QTN8	Staphylococcus_phage	3.0e-51	99.0
SQF00437.1\|2046116_2046608_-	Staphylokinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
SQF00438.1\|2046798_2047554_-	Autolysin	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
SQF00439.1\|2047565_2047820_-\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
SQF00440.1\|2048350_2048725_-	phage protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
SQF00441.1\|2048780_2049068_-	phi PVL ORF 22-like protein	C5I682	Staphylococcus_phage	9.9e-44	100.0
SQF00442.1\|2049113_2049266_-	phage protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
SQF00443.1\|2049258_2053041_-	phage minor structural, N-terminal region domain protein	A0A1V0E5H3	Staphylococcus_phage	0.0e+00	100.0
SQF00444.1\|2053056_2054547_-\|tail	phage tail family protein	R9QST9	Staphylococcus_phage	3.1e-298	100.0
SQF00445.1\|2054546_2059196_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	100.0
SQF00446.1\|2059433_2059880_-	Bacteriophage	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
SQF00447.1\|2059944_2060898_-\|tail	phage major tail, phi13 family protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
SQF00448.1\|2060898_2061279_-	phi PVL orf 12-like protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
SQF00449.1\|2061275_2061653_-	gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
SQF00450.1\|2061652_2061988_-\|head,tail	phage head-tail adaptor	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
SQF00451.1\|2061974_2062307_-\|head,tail	phage gp6-like head-tail connector family protein	D2JLF0	Staphylococcus_phage	2.1e-58	100.0
SQF00452.1\|2062315_2062474_-	Bacteriophage	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
SQF00453.1\|2062509_2063757_-\|capsid	phage major capsid protein, HK97 family	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
SQF00454.1\|2063844_2064429_-\|head,protease	prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
SQF00455.1\|2064421_2065672_-\|portal	portal protein	R9QSV8	Staphylococcus_phage	1.7e-236	100.0
SQF00456.1\|2065677_2065917_-	phi PVL orf 3-like protein	R9QT78	Staphylococcus_phage	5.3e-35	100.0
SQF00457.1\|2065891_2067586_-	phage Terminase family protein	A0A1V0E5G5	Staphylococcus_phage	0.0e+00	100.0
SQF00458.1\|2067588_2068056_-\|terminase	phage terminase small subunit	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
SQF00459.1\|2068185_2068539_-	phage endonuclease	D2JLE2	Staphylococcus_phage	1.3e-66	100.0
SQF00460.1\|2068545_2068998_-	hypothetical phage-related protein	R9QTP3	Staphylococcus_phage	1.8e-79	100.0
SQF00461.1\|2069112_2069574_-	Phage protein	R9QT84	Staphylococcus_phage	8.7e-74	100.0
SQF00462.1\|2069596_2069800_-	phage protein	R9QT57	Staphylococcus_phage	6.3e-29	100.0
SQF00463.1\|2069796_2070447_-	Uncharacterised protein	D2JLD8	Staphylococcus_phage	8.9e-117	100.0
SQF00464.1\|2070453_2070606_-	Uncharacterised protein	A0A2I6PDV2	Staphylococcus_phage	5.4e-17	100.0
SQF00465.1\|2070605_2070755_-	transcriptional activator RinB	R9QSU6	Staphylococcus_phage	1.8e-17	100.0
SQF00466.1\|2070751_2070958_-	phage protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
SQF00467.1\|2070994_2071531_-	dUTPase family protein	R4IG63	Staphylococcus_phage	9.4e-96	100.0
SQF00468.1\|2071523_2071772_-	Phage protein	A0A2K9VBU0	Staphylococcus_phage	3.1e-38	100.0
SQF00469.1\|2071764_2072049_-	phage protein	E9LT36	Staphylococcus_phage	2.7e-46	100.0
SQF00470.1\|2072045_2072495_-	YopX-family protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
SQF00471.1\|2072491_2072686_-	phage protein	A0A2I6PE33	Staphylococcus_phage	2.5e-27	100.0
SQF00472.1\|2072682_2073069_-	phage protein	I1W655	Staphylococcus_phage	4.1e-69	100.0
SQF00473.1\|2073082_2073325_-	phage family protein	R9QT89	Staphylococcus_phage	3.0e-41	100.0
SQF00474.1\|2073328_2073697_-	Phage protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
SQF00475.1\|2073709_2074114_-	phage protein	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
SQF00476.1\|2074122_2074341_-	phage protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
SQF00477.1\|2074347_2075241_-	Phage protein	A0A0E3TAG7	Staphylococcus_phage	1.1e-141	100.0
SQF00478.1\|2075270_2075741_-	Single-stranded DNA-binding protein, phage associated	A0A0E3T9H6	Staphylococcus_phage	5.7e-81	100.0
SQF00479.1\|2075741_2076227_-	Metallo-beta-lactamase superfamily domain protein in prophage	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
SQF00480.1\|2076439_2077360_-	recombinase, phage RecT family protein	A0A1V0E5D7	Staphylococcus_phage	1.0e-166	100.0
SQF00481.1\|2077361_2079311_-	Uncharacterized conserved protein	R9QT82	Staphylococcus_phage	0.0e+00	100.0
SQF00482.1\|2079313_2079577_-	phage protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
SQF00483.1\|2079585_2079846_-	putative phi PVL-like protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
SQF00484.1\|2079938_2080100_-	phage protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
SQF00485.1\|2080096_2080417_-	Uncharacterized protein conserved in bacteria	A0A1V0E5D0	Staphylococcus_phage	1.1e-56	100.0
SQF00486.1\|2080475_2080703_+	Uncharacterised protein	A7TWL9	Staphylococcus_phage	1.7e-38	100.0
SQF00487.1\|2080704_2080896_-	Uncharacterised protein	A7TWL8	Staphylococcus_phage	2.8e-26	100.0
SQF00488.1\|2080945_2081302_+	Phage protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
SQF00489.1\|2081296_2081491_-	phage protein	A0A1P8L6G6	Staphylococcus_phage	4.3e-19	100.0
SQF00490.1\|2081506_2082295_-	prophage L54a, antirepressor	R9QSV3	Staphylococcus_phage	1.2e-144	100.0
SQF00491.1\|2082310_2082553_-	phage DNA-binding protein	R9QSU1	Staphylococcus_phage	9.5e-40	100.0
SQF00492.1\|2082716_2083433_+	repressor-like protein	R9QTP6	Staphylococcus_phage	9.2e-131	100.0
SQF00493.1\|2083444_2084302_+	HIRAN domain-containing protein	R9QTP0	Staphylococcus_phage	1.2e-161	100.0
SQF00494.1\|2084346_2084529_+	Putative cytosolic protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
SQF00495.1\|2084585_2084711_+	ORF136	A0A2I6PF02	Staphylococcus_phage	5.1e-13	100.0
SQF00496.1\|2084707_2085322_-	phi PVL ORF 30-like protein	A7TW88	Staphylococcus_phage	7.9e-107	100.0
SQF00497.1\|2085429_2086467_+	DNA integration/recombination/inversion protein	A7TWL3	Staphylococcus_phage	3.4e-179	100.0
SQF00498.1\|2086523_2087348_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
SQF00499.1\|2087585_2088602_-	gamma-hemolysin component B	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
SQF00500.1\|2088623_2089676_-	Leukocidin S subunit	A0A1X9IGW5	Staphylococcus_phage	2.5e-36	34.6
SQF00501.1\|2090110_2091334_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
SQF00502.1\|2091705_2092551_-	tetracenomycin polyketide synthesis O-methyltransferase TcmP	NA	NA	NA	NA
SQF00503.1\|2092612_2093524_-	ferric hydroxamate receptor 1	NA	NA	NA	NA
SQF00504.1\|2093684_2094992_+	Na+-transporting ATP synthase	NA	NA	NA	NA
SQF00505.1\|2095563_2096190_-	Phage protein	C8CH40	Staphylococcus_phage	7.0e-42	44.5
SQF00506.1\|2096186_2096366_-	mobile element-associated protein	NA	NA	NA	NA
2096898:2096917	attL	NA	NA	NA	NA
SQF00507.1\|2097374_2098067_-\|protease	subtilase family protease, putative	NA	NA	NA	NA
SQF00508.1\|2098053_2098659_-	Uncharacterised protein	NA	NA	NA	NA
SQF00509.1\|2098672_2099422_-	exported protein	NA	NA	NA	NA
SQF00510.1\|2100568_2100931_+	pathogenicity island protein	NA	NA	NA	NA
SQF00511.1\|2101015_2101585_-\|terminase	putative phage terminase	Q4ZE85	Staphylococcus_phage	6.6e-100	97.4
SQF00512.1\|2101581_2101923_-\|transposase	transposase	Q4ZE86	Staphylococcus_phage	8.7e-55	91.2
SQF00513.1\|2101925_2102453_-	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	3.7e-89	97.1
SQF00514.1\|2102503_2102722_-	hypothetical mobile element-associated protein	NA	NA	NA	NA
SQF00515.1\|2102739_2103318_-\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	1.6e-29	39.5
SQF00516.1\|2103329_2103671_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	2.1e-56	96.5
SQF00517.1\|2104017_2104659_-\|transposase	transposase	Q4ZE67	Staphylococcus_phage	8.0e-110	92.5
SQF00518.1\|2104660_2104933_-	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	3.2e-44	100.0
SQF00519.1\|2104919_2105723_-	pathogenicity island replication protein	Q4ZE69	Staphylococcus_phage	6.2e-152	97.0
SQF00520.1\|2105898_2107515_-	bacteriophage resistance protein	A0A1W6JPF4	Staphylococcus_phage	1.8e-243	77.0
SQF00521.1\|2107589_2107889_-	mobile element-associated DUF1474-containing protein, putative	A0A1W6JQH0	Staphylococcus_phage	6.1e-20	58.2
SQF00522.1\|2107891_2108101_-	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
SQF00523.1\|2108093_2108240_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
SQF00524.1\|2108236_2108554_-	mobile element-associated transcriptional regulator, putative	A0A1W6JQE0	Staphylococcus_phage	8.6e-49	94.3
SQF00525.1\|2108557_2108770_-	pathogenicity island protein	A0A1W6JQE8	Staphylococcus_phage	3.8e-24	84.1
SQF00526.1\|2108943_2109576_+	mobile element-associated transcriptional regulator, putative	A0A1W6JQE6	Staphylococcus_phage	2.2e-96	82.9
SQF00527.1\|2109584_2110757_+\|integrase	mobile element-associated integrase, putative	A0A1W6JQD3	Staphylococcus_phage	5.9e-220	98.2
SQF00528.1\|2110825_2112442_-	heat shock protein 60 family chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
2110824:2110843	attR	NA	NA	NA	NA
SQF00529.1\|2112517_2112802_-	Heat shock protein 60 family co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
SQF00530.1\|2112976_2113720_+	abortive infection protein	NA	NA	NA	NA
SQF00531.1\|2113744_2115004_-	membrane anchored protein	NA	NA	NA	NA
SQF00532.1\|2115200_2115827_+	nitroreductase family protein	NA	NA	NA	NA
SQF00533.1\|2116187_2116973_+	Aliphatic amidase amiE	NA	NA	NA	NA
SQF00534.1\|2117884_2118508_+	accessory gene regulator protein B AGRB	NA	NA	NA	NA
SQF00535.1\|2118504_2118645_+	Regulator protein agrD	NA	NA	NA	NA
SQF00536.1\|2118669_2119962_+	Regulator protein agrC	NA	NA	NA	NA
SQF00537.1\|2119980_2120697_+	accessory gene regulator protein A	A0A2H4J4Z6	uncultured_Caudovirales_phage	6.8e-25	32.2
SQF00538.1\|2121065_2122025_-	Fructokinase	NA	NA	NA	NA
SQF00539.1\|2122021_2123506_-	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	4.0e-19	25.6
SQF00540.1\|2123654_2124605_-	Sucrose operon repressor ScrR, LacI family	NA	NA	NA	NA
SQF00541.1\|2124787_2126038_-	ammonium transporter family protein	H8ZJB2	Ostreococcus_tauri_virus	5.8e-40	31.2
SQF00542.1\|2126244_2126469_-	transcriptional regulator	NA	NA	NA	NA
SQF00543.1\|2126528_2127608_-	putative transport system permease protein	NA	NA	NA	NA
SQF00544.1\|2127911_2128547_-	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NA	NA	NA	NA
SQF00545.1\|2128799_2130728_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	2.4e-53	30.4
SQF00546.1\|2131680_2133291_+	MutS-related protein, family 1	A0A0N9R0S5	Chrysochromulina_ericina_virus	3.3e-19	26.9
SQF00547.1\|2133392_2134418_-\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	5.8e-62	40.6
SQF00548.1\|2134410_2134875_-	Ribosomal-protein-S18p-alanine acetyltransferase	NA	NA	NA	NA
SQF00549.1\|2134847_2135510_-\|protease	Inactive protein of metal-dependent protease family, putative molecular chaperone	NA	NA	NA	NA
SQF00550.1\|2135490_2135985_-	ATP/GTP hydrolase	NA	NA	NA	NA
SQF00551.1\|2136462_2138151_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
SQF00552.1\|2138178_2139948_+	acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.3e-63	30.1
SQF00553.1\|2139947_2140202_+	Acetolactate synthase small subunit	NA	NA	NA	NA
SQF00554.1\|2140338_2141343_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQF00555.1\|2141372_2142902_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	5.5e-08	28.1
SQF00556.1\|2142904_2143951_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
SQF00557.1\|2143964_2145335_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
SQF00558.1\|2145335_2145908_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
SQF00559.1\|2145922_2147191_+	Threonine dehydratase	NA	NA	NA	NA
SQF00560.1\|2147267_2147684_-	exported protein	NA	NA	NA	NA
SQF00561.1\|2148085_2149405_+\|transposase	IS1181 transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483324

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection