CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483328	Streptococcus equi subsp. zooepidemicus strain NCTC12090 genome assembly, chromosome: 1	3 crisprs	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,RT,WYL,DinG,csm6,csn2,cas9	1	17	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483328_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483328_1

574658-576477

TypeI

NA:I-C

Consensus_repeat	Method
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CRISPRCasFinder
GTCTCGCCNNNNANGGGCGAGTGGATTGAAAT	CRT
GGGCGAGTGGATTGAAAT	PILER-CR

27 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of LS483328_1

>merge|LS483328|1|574658-576477|CRISPRCasFinder,CRT,PILER-CR
GTCTCGCCCCATACGGGCGAGTGGATTGAAATATTTCAGCCTTCTAACATCAAGGAGAAACCAATGATGTCTCGCCCCATACGGGCGAGTGGATTGAAATTCAATTAATTGTTGTAACTTTGACAATCTCTCAGTCTCGCCCCATACGGGCGAGTGGATTGAAATCATGCCAATAGCTTGAGCTTATGCTGTGGGTAATCATGTCTCGCCCCATACGGGCGAGTGGATTGAAATCTGTTGAATTGCGATTTAAAGCAGAATTTATTGAGTCTCGCCCCATACGGGCGAGTGGATTGAAATAAATAGACTTGTTTCAAAACTTTTAATCATCTTGTCTCGCCCCATACGGGCGAGTGGATTGAAATGAAATTTTTGGCACAAGATCCTCTCTATAAACATCGTCTCGCCCCATACGGGCGAGTGGATTGAAATCAAGTTAGTAGTCGCTTGGTCGACATTCTCATTTGGTCTCGCCCCATACGGGCGAGTGGATTGAAATGCGAAGATAATATGCCAATTGAAGTTGTTAATCGGTCTCGCCCCATACGGGCGAGTGGATTGAAATGTCTATATTACTTAACTTATCTATATAACCACCTAGTCTCGCCCCATACGGGCGAGTGGATTGAAATAGCTACATAACGGTTAACAGCAGCCATAGCACAGTCTCGCCCCATACGGGCGAGTGGATTGAAATACCAAAAACCTCTGATAACTCCTCTGTGCTTACCGTCTCGCCCCATACGGGCGAGTGGATTGAAATAGCTGAAAAAAATAAAGGTTTTGATTATCATAAGGTCTCGCCCCATACGGGCGAGTGGATTGAAATAAAAAGGACTAGATATTACCTACAACTTGTCCTTGTCTCGCCCCATACGGGCGAGTGGATTGAAATAAGAGAAGATGTCCGACTCACCGAGTCAGAAATCGTCTCGCCCCATACGGGCGAGTGGATTGAAATTGCGTTGTCAAAAGTGTTAAGAGGAGAGGTAACAGTCTCGCCCCATACGGGCGAGTGGATTGAAATACTTTCATTAAGATAGGTCGTATCTGGTAAGTAAGTCTCGCCCCATACGGGCGAGTGGATTGAAATCCGTCAAAGATGTGCATCAGACCTGTACCGTCACCGTCTCGCCCCATACGGGCGAGTGGATTGAAATGGCTTTAAAGTGCCTATTGTCGTTGACCAAAACGGTCTCGCCCCATACGGGCGAGTGGATTGAAATTTATTATTGGCTTTGTCTATCAATAAAAAAGCTAGTCTCGCCTTTCATGGGCGAGCGGATTGAAATAAAAAACGATGAGTAGCAAACTTGCAGAAGTTCAGTCTCGCCTTTCATGGGCGAGCGGATTGAAATAAAGCCGAGAATGGAGCTAAGATGATTTCCAGTCGGTCTCGCCTTTCATGGGCGAGCGGATTGAAATTTGGTGAGGTTGAGTTTAAAGGTAAGATTGACTGTCTCGCCTTTCATGGGCGAGCGGATTGAAATGCAATACGTTAGTGGCAAATCTGTTCCAGCTCAACGTCTCGCCTTTCATGGGCGAGCGGATTGAAATTTGTAGAAGCACAACAAGGCACGTTGCAATTTAGTCTCGCCTTTCATGGGCGAGTGGATTGAAATAGAAATGAATGCTAAGGTAAACTCACTAAATAAGGTCTCGCCTTTCATGGGCGAGCGGATTGAAATATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCGCCTTTCATGGGCGAGTGGATTGAAATATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCGCCTTTCATGGGCGAGTGGATTGAATA

>LS483328|1|1|574658-576477|CRISPRCasFinder
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	ATTTCAGCCTTCTAACATCAAGGAGAAACCAATGAT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	TCAATTAATTGTTGTAACTTTGACAATCTCTCA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CATGCCAATAGCTTGAGCTTATGCTGTGGGTAATCAT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CTGTTGAATTGCGATTTAAAGCAGAATTTATTGA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AAATAGACTTGTTTCAAAACTTTTAATCATCTT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GAAATTTTTGGCACAAGATCCTCTCTATAAACATC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CAAGTTAGTAGTCGCTTGGTCGACATTCTCATTTG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GCGAAGATAATATGCCAATTGAAGTTGTTAATCG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GTCTATATTACTTAACTTATCTATATAACCACCTA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AGCTACATAACGGTTAACAGCAGCCATAGCACA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	ACCAAAAACCTCTGATAACTCCTCTGTGCTTACC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AGCTGAAAAAAATAAAGGTTTTGATTATCATAAG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AAAAAGGACTAGATATTACCTACAACTTGTCCTT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AAGAGAAGATGTCCGACTCACCGAGTCAGAAATC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	TGCGTTGTCAAAAGTGTTAAGAGGAGAGGTAACA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	ACTTTCATTAAGATAGGTCGTATCTGGTAAGTAA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CCGTCAAAGATGTGCATCAGACCTGTACCGTCACC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GGCTTTAAAGTGCCTATTGTCGTTGACCAAAACG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	TTATTATTGGCTTTGTCTATCAATAAAAAAGCTA
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	AAAAAACGATGAGTAGCAAACTTGCAGAAGTTCA
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	AAAGCCGAGAATGGAGCTAAGATGATTTCCAGTCG
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	TTGGTGAGGTTGAGTTTAAAGGTAAGATTGACT
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	GCAATACGTTAGTGGCAAATCTGTTCCAGCTCAAC
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	TTGTAGAAGCACAACAAGGCACGTTGCAATTTA
GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT	AGAAATGAATGCTAAGGTAAACTCACTAAATAAG
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	ATCCGATAGGTGATTTTACGGTGCTGACTCTCCA
GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT	ATCCGATAGGTGATTTTACGGTGCTGACTCTCCA
GTCTCGCCTTTCATGGGCGAGTGGATTGAATA

>LS483328|1|1|574658-576477|CRT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	ATTTCAGCCTTCTAACATCAAGGAGAAACCAATGAT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	TCAATTAATTGTTGTAACTTTGACAATCTCTCA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CATGCCAATAGCTTGAGCTTATGCTGTGGGTAATCAT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CTGTTGAATTGCGATTTAAAGCAGAATTTATTGA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AAATAGACTTGTTTCAAAACTTTTAATCATCTT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GAAATTTTTGGCACAAGATCCTCTCTATAAACATC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CAAGTTAGTAGTCGCTTGGTCGACATTCTCATTTG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GCGAAGATAATATGCCAATTGAAGTTGTTAATCG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GTCTATATTACTTAACTTATCTATATAACCACCTA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AGCTACATAACGGTTAACAGCAGCCATAGCACA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	ACCAAAAACCTCTGATAACTCCTCTGTGCTTACC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AGCTGAAAAAAATAAAGGTTTTGATTATCATAAG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AAAAAGGACTAGATATTACCTACAACTTGTCCTT
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	AAGAGAAGATGTCCGACTCACCGAGTCAGAAATC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	TGCGTTGTCAAAAGTGTTAAGAGGAGAGGTAACA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	ACTTTCATTAAGATAGGTCGTATCTGGTAAGTAA
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	CCGTCAAAGATGTGCATCAGACCTGTACCGTCACC
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	GGCTTTAAAGTGCCTATTGTCGTTGACCAAAACG
GTCTCGCCCCATACGGGCGAGTGGATTGAAAT	TTATTATTGGCTTTGTCTATCAATAAAAAAGCTA
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	AAAAAACGATGAGTAGCAAACTTGCAGAAGTTCA
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	AAAGCCGAGAATGGAGCTAAGATGATTTCCAGTCG
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	TTGGTGAGGTTGAGTTTAAAGGTAAGATTGACT
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	GCAATACGTTAGTGGCAAATCTGTTCCAGCTCAAC
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	TTGTAGAAGCACAACAAGGCACGTTGCAATTTA
GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT	AGAAATGAATGCTAAGGTAAACTCACTAAATAAG
GTCTCGCCTTTCATGGGCGAGCGGATTGAAAT	ATCCGATAGGTGATTTTACGGTGCTGACTCTCCA
GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT	ATCCGATAGGTGATTTTACGGTGCTGACTCTCCA
GTCTCGCCTTTCATGGGCGAGTGGATTGAATA

>LS483328|1|1|574672-576411|PILER-CR
GGGCGAGTGGATTGAAAT	ATTTCAGCCTTCTAACATCAAGGAGAAACCAATGATGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	TCAATTAATTGTTGTAACTTTGACAATCTCTCAGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	CATGCCAATAGCTTGAGCTTATGCTGTGGGTAATCATGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	CTGTTGAATTGCGATTTAAAGCAGAATTTATTGAGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	AAATAGACTTGTTTCAAAACTTTTAATCATCTTGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	GAAATTTTTGGCACAAGATCCTCTCTATAAACATCGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	CAAGTTAGTAGTCGCTTGGTCGACATTCTCATTTGGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	GCGAAGATAATATGCCAATTGAAGTTGTTAATCGGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	GTCTATATTACTTAACTTATCTATATAACCACCTAGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	AGCTACATAACGGTTAACAGCAGCCATAGCACAGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	ACCAAAAACCTCTGATAACTCCTCTGTGCTTACCGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	AGCTGAAAAAAATAAAGGTTTTGATTATCATAAGGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	AAAAAGGACTAGATATTACCTACAACTTGTCCTTGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	AAGAGAAGATGTCCGACTCACCGAGTCAGAAATCGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	TGCGTTGTCAAAAGTGTTAAGAGGAGAGGTAACAGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	ACTTTCATTAAGATAGGTCGTATCTGGTAAGTAAGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	CCGTCAAAGATGTGCATCAGACCTGTACCGTCACCGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	GGCTTTAAAGTGCCTATTGTCGTTGACCAAAACGGTCTCGCCCCATAC
GGGCGAGTGGATTGAAAT	TTATTATTGGCTTTGTCTATCAATAAAAAAGCTAGTCTCGCCTTTCAT
GGGCGAGCGGATTGAAAT	AAAAAACGATGAGTAGCAAACTTGCAGAAGTTCAGTCTCGCCTTTCAT
GGGCGAGCGGATTGAAAT	AAAGCCGAGAATGGAGCTAAGATGATTTCCAGTCGGTCTCGCCTTTCAT
GGGCGAGCGGATTGAAAT	TTGGTGAGGTTGAGTTTAAAGGTAAGATTGACTGTCTCGCCTTTCAT
GGGCGAGCGGATTGAAAT	GCAATACGTTAGTGGCAAATCTGTTCCAGCTCAACGTCTCGCCTTTCAT
GGGCGAGCGGATTGAAAT	TTGTAGAAGCACAACAAGGCACGTTGCAATTTAGTCTCGCCTTTCAT
GGGCGAGTGGATTGAAAT	AGAAATGAATGCTAAGGTAAACTCACTAAATAAGGTCTCGCCTTTCAT
GGGCGAGCGGATTGAAAT	ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCGCCTTTCAT
GGGCGAGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483328.1\|SQF05083.1\|563870_564260_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|214396
LS483328.1\|SQF05092.1\|574215_574509_+\|CRISPR-associated-protein-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
LS483328.1\|SQF05089.1\|571661_572510_+\|CRISPR-associated-protein	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
LS483328.1\|SQF05099.1\|583250_583955_+\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
LS483328.1\|SQF05088.1\|569777_571661_+\|CRISPR-associated-protein	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
LS483328.1\|SQF05084.1\|564269_564527_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05087.1\|569034_569778_+\|CRISPR-associated-protein	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
LS483328.1\|SQF05095.1\|578272_579385_+\|peptide-methionine-sulfoxide-reductase	unknown	unknown	gnl\|CDD\|184456
LS483328.1\|SQF05100.1\|584214_584703_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|239827
LS483328.1\|SQF05090.1\|572511_573183_+\|CRISPR-associated-RecB-family-exonuclease-Cas4b	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
LS483328.1\|SQF05091.1\|573179_574205_+\|CRISPR-associated-protein-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LS483328.1\|SQF05094.1\|577604_578255_+\|thiol:disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239264
LS483328.1\|SQF05097.1\|580389_582108_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
LS483328.1\|SQF05101.1\|585213_585687_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
LS483328.1\|SQF05102.1\|585827_586508_+\|Fumarate-and-nitrate-reduction-regulatory-protein	unknown	unknown	gnl\|CDD\|223736
LS483328.1\|SQF05098.1\|582147_583236_+\|cytoplasmic-protein	unknown	unknown	gnl\|CDD\|225197
LS483328.1\|SQF05085.1\|564909_565233_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|373960
LS483328.1\|SQF05093.1\|576880_577591_+\|cytochrome-c-type-biogenesis-protein	unknown	unknown	gnl\|CDD\|223856
LS483328.1\|SQF05086.1\|565850_568304_+\|CRISPR-associated-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483328.1\|SQF05096.1\|579652_580393_+\|two-component-response-regulator-YesN-like	unknown	unknown	gnl\|CDD\|227095

Protein	Function_ID	Function_description	E-value
LS483328.1\|SQF05083.1\|563870_564260_+\|Uncharacterised-protein	gnl\|CDD\|214396	CHL00206, ycf2, Ycf2; Provisional.	0.00765737
LS483328.1\|SQF05092.1\|574215_574509_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.21659e-31
LS483328.1\|SQF05089.1\|571661_572510_+\|CRISPR-associated-protein	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	3.94613e-136
LS483328.1\|SQF05099.1\|583250_583955_+\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	1.68056e-92
LS483328.1\|SQF05088.1\|569777_571661_+\|CRISPR-associated-protein	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	2.80698e-113
LS483328.1\|SQF05087.1\|569034_569778_+\|CRISPR-associated-protein	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	5.75968e-93
LS483328.1\|SQF05095.1\|578272_579385_+\|peptide-methionine-sulfoxide-reductase	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	6.4205e-165
LS483328.1\|SQF05100.1\|584214_584703_+\|regulatory-protein	gnl\|CDD\|239827	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.	6.00337e-60
LS483328.1\|SQF05090.1\|572511_573183_+\|CRISPR-associated-RecB-family-exonuclease-Cas4b	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	6.56551e-29
LS483328.1\|SQF05091.1\|573179_574205_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LS483328.1\|SQF05094.1\|577604_578255_+\|thiol:disulfide-oxidoreductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	4.38514e-35
LS483328.1\|SQF05097.1\|580389_582108_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	3.23087e-63
LS483328.1\|SQF05101.1\|585213_585687_-\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	8.79004e-63
LS483328.1\|SQF05102.1\|585827_586508_+\|Fumarate-and-nitrate-reduction-regulatory-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.16223e-40
LS483328.1\|SQF05098.1\|582147_583236_+\|cytoplasmic-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	4.07742e-22
LS483328.1\|SQF05085.1\|564909_565233_+\|Uncharacterised-protein	gnl\|CDD\|373960	pfam15597, Imm59, Immunity protein 59. A predicted immunity protein with an alpha+beta fold and a conserved [DE]R motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Ntox13 or Ntox40 families. In some proteins this domain is fused to the Imm38, pfam15599 immunity domain.	1.88951e-29
LS483328.1\|SQF05093.1\|576880_577591_+\|cytochrome-c-type-biogenesis-protein	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	8.62107e-42
LS483328.1\|SQF05086.1\|565850_568304_+\|CRISPR-associated-helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.88725e-84
LS483328.1\|SQF05096.1\|579652_580393_+\|two-component-response-regulator-YesN-like	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	3.70085e-79

>LS483328.1|SQF05092.1|574215_574509_+|CRISPR-associated-protein-Cas2
MMVLVTYDVNTETASGRKRLRQVAKLCVDYGQRVQHSVFECSVTPAEFVEIKHKLTTIIDTEVDSIRFYLLGKHWQNRVETLGRSDSYDPDIGVLLL
>LS483328.1|SQF05091.1|573179_574205_+|CRISPR-associated-protein-Cas1
MKKLLNTLYLTQEDYYITKEGDNIVIKQDGKTVSRFPFRIIDGVVCFSYLGASPALIKLCTENQINLSFHTPQGRFCGRYVGATNGNVLLRREHYRLADRDESLEYAKRFILAKISNARKYLLHFRRDHRDQIDGKLFEEVNGELIWALEMVQATDNKDSLRGIEGQAANQYFRIFNDLVLTDKKAFTFGGRSKRPPLDRVNALLSFGYSLLTFECQSALEAVSLDSYVGFFHTDRPGRASLALDLVEEFRSYIVDRFVFSLINKGQLTKKHFDVKENGSILLTEKGRVTFIELWQKRKHMEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDIDSYPPFMI
>LS483328.1|SQF05090.1|572511_573183_+|CRISPR-associated-RecB-family-exonuclease-Cas4b
MVYVEDDYLMLSGIQHFQFCKRQWALIHIDQQWADNEATVHGQILHTRADNPYIKEKRKDFFLSYAMHISSACLGLYGIMDVVEFHKDDSGVTVKGKRGRWLPRVVEYKRGKPKKDRRDIVQLVAQTMCLEETLNCQIAEGSLYYHSVNKKVQIAITDELRREVQELANQMHRFYGAKELPKAEYFKNCQLCSLVEVCKPRISKKVRNVDRYIAAAMVSEEII
>LS483328.1|SQF05089.1|571661_572510_+|CRISPR-associated-protein
MLEHKIDFMVTVEVREANANGDPLSGNMPRTNAKGYGLMSDVSIKRKIRNRLQDMGQSIFVQANERIEDEFRSLENRFSAQFDKNDKDDDIERRANELWLDVRSFGQVFTYLKKSIGVRGPVSISMAKSLEPVVISSLQITRSTNGMEPKGDSSRSSDTMGTKHFVDYGIYVIKGSINAHFAEKTGFSEEDADIIKQALVSLFENDASSARPEGSMRVREVFWFTHSSKLGNVSSARVFDLLVFDMETPDKDCYEAYGIHLDEENLAAYQAKGLTVEVLEGL
>LS483328.1|SQF05088.1|569777_571661_+|CRISPR-associated-protein
MDFFTSLLRAYEHAEDIGLVDNQEQSGTILLPIYHTNRRSNGKDTIVVQLDKTGQFMKAEYLADGETIIFPVTAESVARSGKNPAPHPLVDKLTYFVSAHNQEQYETYHQQLEGWISACQDKQVMSYLSLIQQFILKEDFLDLICQSLFRKQLSRNGLKVTYALSEEKEKTVDLSACFLTFQIAQFIGFKTVSVTNFTALHKDYIAYLMSKQTANMICNISGQKEVLATKHRGLLGNAKLISVSNHAEAYKGRFRERDDVFRVGNQTSEKLHLMAKYFLEHEQTHVWLGSGQHMINWFSDDLANDSQLNITQALLLDPFDDEETFLSTPMISEENKSINRSFITGQRQFSDNASYYIAILNKTNDGRIALKYFRQLQASSLLKNLAVWQENYSWEFQRKGNQFVQKLPSFKEIILAAYGVDRERSLELDNDNFRSDQYQRLVTSLIDGKPLPDTIVKKLEANIKQRQKYRKHWHQVEQISLAILHKQNGEEFTPMLDRDNTNRSYLFGRLLGIYELIEKSRNNSKGRAKDELKRITNAERYWTAYANRPASLMRNLEDKIYPYSEYLKINEPGLWSKLEKEREEIIALLTSSLETTDFNKPLDYRFIFGYYAEKKYFYTPKDESEDA
>LS483328.1|SQF05087.1|569034_569778_+|CRISPR-associated-protein
MYRSRYFYMRVRGELALFTNPATKGSSERSSYSVPTRQALQGIVDAVYHKPTITNVVTEVKVINQIQTELHGTRALLKDYGADLSYVSYLSDVEYLIKYHFVWNENRPDLVKDRLPNKHEAIMERSLRKGGRRDVFLGTRECLGLVEAISQEEYETAQIASEHANQEIDLGIMFHSFAYPTDRKEPLRSYFTRTVMTNGTIHFKEQAECEIVNTLSSYTFKPAGPIKPVEEEFEGYQLDTIREAGGQ
>LS483328.1|SQF05086.1|565850_568304_+|CRISPR-associated-helicase
MILAHYQGKTDLEPAKEQSLEEHSFQVAELARTAATSIKQGDLVFLLGLFHDLGKAEYRFQEKLLKKPNSHVDHAYAGARYLYDEIGKVLLGHVQQYPDSKSLVLYFRDIVAYVISAHHGMYDLRMTEPTEEASRFAHNKLLHRIFQERPDYHYQKDVLPFVEVLEKSLPRYGYDHLADLITRAFYNFQLAWDRLDMADASEQDYYSGCFVRLYLSLLKNADVLDTINAYETVIEPLTEEKQEELRISYLEAVESLYASFGQSKLRLNAIRNKLAERVKGRGREDSTGIYRLNLPTGAGKTNLSLRYATHQMVYQQKKHFLYVTPFLSVLEQNALAMKQVIGEEGVLEHHSNVVREIDNTNQNNDDADEDRDSLRREYLIDSWDSPVVLTSMVQFFQTLFKTRSAHLRRFSSLIDSVVILDEVQSLPIEVTTLFNLTMTFLSRVMQTTLVLCTATQPAYDSESITHTLTYGGSKAEEADIVTVTDEEQLVFARTELCKLSDSDEKTSLVELAQTILEQEMSTLVILNTKPAVERLYQLLRDQTERPLYQLSTNMCPKHRLDVIAEIKSRLPNNVPLICVSTQLIEAGVDIDFERVIRSYAGIDSIVQAAGRCNREGRRPIGQVLLVNLTDDEENLSYLKEIKHKKDATETILYQKTSPIDIAALNEAFFNCYYENNKKRLDYPLGDNESVYQYLSSNAPSNIKKGKLRQAFKTAGQKMDLIQDQSIGVFVYYDDGVGRERLEALEEQLLKSSYPSSEELKAIKAELKALQPYTITLRDNHELLKATRSYLSGQILILQEHYYNQTFGLTKEADSFIL
>LS483328.1|SQF05085.1|564909_565233_+|Uncharacterised-protein
MNNTNILNWRKEVEEAIKNRGFESLHYVLFDEEKRLPWAFHLYQKNGKFYVEGRDERSYIIGHSKEYHKFNDAKHDLLKKLELVIASNRLKKQLGEPTEYPSPLWNE
>LS483328.1|SQF05084.1|564269_564527_+|Uncharacterised-protein
MGITQMTWEEYETFNKVETPDNLYIREHRGHYYTFFELGVASVRRIFELSAADFEEYLKGLRTADEPSLQSSKRSLAINGRREES
>LS483328.1|SQF05083.1|563870_564260_+|Uncharacterised-protein
MARSQLTWEDVSQYEEVKGYGQQVWKHQGTYYLVTNEGGIAEQRVVYELPYDLFQLLEQGKRNLGEVAFKLRYDCWPPNISQEEANRVFWRQYPEVLKNNKNAQKLFTRRELEELLPEGSLILASSDSD
>LS483328.1|SQF05093.1|576880_577591_+|cytochrome-c-type-biogenesis-protein
MELTMLLMVSVFIAGLLSFFSPCIFPVLPVYLGILLDSDDSRSITIFGKKLYWYGIVKTLAFISGLSTIFIILGYGAGLLGNILYAAWFRYLLGAFVILLGIHQMEIVTIKKLQFQKSVAFQNKKDRNAVLNAFLLGITFSFGWTPCVGPVLSSVLALAASGGSGAWQGGFLMIIYTLGLGLPFLLLSFASGIVLKHFNKLKPHIPLLKKLGGLLIVVMGLLLMTGNLNSLSGLFE
>LS483328.1|SQF05094.1|577604_578255_+|thiol:disulfide-oxidoreductase
MKKTTFLTTGLACLALLTACSAKDKMAMNDSKKDHMTMTDDKSKMKKDQKDMMSDKKDMMSDDKHMSDADKASKNDGQMAPDFELKSIDGKTYRLSDFKGKKVYLKFWASWCSICLSTLGDTQSLATMKDKDFEVLTIVSPGHQGEKSEADFKKWFEGTDFKDLPVLLDPDGKLLEAYGVRSYPTEIFVGSDGILAKKHIGYAKKSEIEKTLKEIK
>LS483328.1|SQF05095.1|578272_579385_+|peptide-methionine-sulfoxide-reductase
MEHKWKLLLLVFGALVFLGGVLMVFQRGYATSYNNNQVKLPAKGTSQLKKTANAKLPEKKKEIYLAGGCFWGVEEYFSNVDGVLDAVSGYANGRGDTTSYQLLHQTGHAETVQVVYDANRISLKELLLHYFRIIDPTSLNKQGNDRGSQYRTGVYYTDPSDLTTIDMVFQEKASDYKKKIVVEKAPLKSFTKAEEYHQDYLKKNPNGYCHINVNEASYPVIDKTKYPKPSKEEIKKKLSKDEYRVTQNNETEKAFSNRYWDSFEAGIYVDVVTGEPLFSSKDKFESGCGWPSFSRPISPDVLRYKTDKSFNMNRTEVRSRSGNSHLGHVFTDGPKDQGGLRYCINSLSIRFIPKAEMEAKGYGYLLTAVD
>LS483328.1|SQF05096.1|579652_580393_+|two-component-response-regulator-YesN-like
MYSLLIVEDEYLVRQGIRSLVDFDQFAIDRIAEAENGQVAWELFQENPYDIVLTDINMPKLNGIQLAEFIKTRAPKTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKSDVEEMLKKLKQKLEKLKKTEALQKLVDKPQQEGSEIKLAIQERLADSSLTLKSLSSQLGFSPNYLSVLIKKDLGLPFQDYLIQERLKKAKLLLLTTDLKVYEIAEQVGFEDINYFSQRFKQLVGMTPRQYKKGEGQ
>LS483328.1|SQF05097.1|580389_582108_+|sensor-histidine-kinase
MKRYPLLVQLVSYFFLIVISLITILGVIYYQTSSHNIRQLIERETRQSIRQSSQFIDAYIKPLKETTSALANHTSIQAFAKDANSNDQSQVLALMTTVLSTNSDLLSAVLVTKDGRMVTTNPKLTMTTSHDMMAELWYKSAIDRKAMPVLTPARQLSSHSKKDWVVSVTQEVVDQAGNNLGVLRLDIGYNTIKSSLDQLQLGRKGFAFIVNDKHEFVYHPKNTVYSSAKEMAAMKPYLAVTDGYTKPKDYFVYQRVIPDSQWTLVGVASLDQLYHVQRQIFWSFLGTGLLATIICGLGTVFVLRSWIGPIRRLQALILAIQKGNRQLRAEETGSPELADLARQFNAMLDQIDSLMVSVADKEKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSQRVVDVTKSLAKYFRLALNQGNEFISLADELDHARQYLFIQKQRYGDKLHYEIKGLEKYQDFMIPKLILQPLVENAIYHGIKEVDRPGIIRVTVSEADRHVILSVWDNGKGISLADDSSQTLLERGGVGLKNVDQRLRLQYGHLYRMAITSEQAVFTEIKLYLPKALDSLDEAP
>LS483328.1|SQF05098.1|582147_583236_+|cytoplasmic-protein
MSLESDYFKRKSPIFEALIPYGFTQEGDTYCYQESFMEGDFKALITIKSSGQLSARVIDTDLGEDYLPLRNDRQQGVYVGQVRQAYLELLGRLSAACFRSTPFQTRQANQVATSISQQWNDPLDYPFEKFPNIATYRVSGKWYAMVLPLLADKLGQVPKVLQGQMVEVLTVRIAPNQLTHLLQQRGVYPAYHMSKKTWISLLLDGTLADDQLWELVTKSRQLANPNGLANPDGPDYWVIPANLSYYDIDAEFAANPDILWTQKASIKAGDYVFIYITAPTRSIRYACQVLRSDIPNQGYRKNAKIKTLMSLRLLHCYEDGLISLDLMKQYGVNAVRGPRRLSPQLVAFLKEKEYFKDVKQKE
>LS483328.1|SQF05099.1|583250_583955_+|B3/4-domain-containing-protein
MTQFIADQSFWELFPDAKLGVLLLRNYDNQEDSPQEVKQLLADSHDIAKQYLTEESFSDNEIIQVYRQAYQRFKTKKGARSSIEALLKRVANGQVLSSINPLVDIYNAASLRFGLPVGAEDSDCFVGDLRLTLTEGGDEFYLIGDSKNSPTLPNELCYKDDAGAVCRCLNWRDGERTMITDHTKNAFLVIEALDSKTQARLQDALKFIEDKAKCYLKAETALYTLDQASPSITF
>LS483328.1|SQF05100.1|584214_584703_+|regulatory-protein
MELFDKVDDTLKALAIDYQLVEHEPALTTEQADQFIEGIEGVRTKTMFLTTRKKNHFYLVIMDDTKRLDMNRFKELVGEKQIKMASAECLLAKMQLPPGVVSPFGLLNNEDKDIQVYVDKAIAHEARMSFHPNTNDKTIFIQTDDLFKFLAAIGYAVNIVDL
>LS483328.1|SQF05101.1|585213_585687_-|arginine-repressor
MNKKETRHQLIRSLISETTIHTQQELQERLRKNGISITQATLSRDMKELNLVKVTTGNDTHYEALAISQTRWEHRLRFYMEDALVMLRVVQHQIILKTLPGLAQSFGSILDAMQISEIVATICGDDTCLIICEDNEQAKACFEILSHYTPPFFFSNK
>LS483328.1|SQF05102.1|585827_586508_+|Fumarate-and-nitrate-reduction-regulatory-protein
MIRREDYQYLRKLDDFCHFSIEQFDKIVGQMEFRQAKKDHMLFFEGDKRDRLFLVTSGYFKIEQSDRTGTFTYTDFIRHGTIFPYGGLFTDDYYHFSVVAMTDVTYFYFPTDLFEDYSLHNQQQMKHLYSKMSSLLELHELKVRNLITSSASSRVIQSLAILLVEMGKDSDTLPFQLTTTDIAQMSGTTRETVSHVFRDLKKSGLIAVKGKYLTYLDKSYFLQYTT

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Crispr_ID: LS483328_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483328_2

905554-905663

Orphan

Consensus_repeat	Method
CTGACTTGATGACAGCTTATACTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483328_2

>merge|LS483328|2|905554-905663|CRISPRCasFinder
CTGACTTGATGACAGCTTATACTAAAATGCAATATAATTTGTCGTTTGAGTCAATAATAAGATGATAGATCATTACTATTTATCTGAGTTGATGACAGCTTATACTAAAA

>LS483328|2|2|905554-905663|CRISPRCasFinder
CTGACTTGATGACAGCTTATACTAAAA	TGCAATATAATTTGTCGTTTGAGTCAATAATAAGATGATAGATCATTACTATTTAT
CTGAGTTGATGACAGCTTATACTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483328.1\|SQF05382.1\|913648_916942_+\|ATP-dependent-nuclease-subunit-B-AddB	unknown	unknown	gnl\|CDD\|274291
LS483328.1\|SQF05381.1\|912115_913510_+\|glycosyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|133045
LS483328.1\|SQF05369.1\|899301_899850_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05366.1\|895071_895881_+\|sortase-SrtC1	unknown	unknown	gnl\|CDD\|320676
LS483328.1\|SQF05370.1\|899842_900130_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|349562
LS483328.1\|SQF05367.1\|896195_897806_+\|Mac-family-protein	unknown	unknown	gnl\|CDD\|370249
LS483328.1\|SQF05380.1\|911969_912092_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05375.1\|906232_906868_+\|membrane-protein	unknown	unknown	gnl\|CDD\|379219
LS483328.1\|SQF05371.1\|900129_900585_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05374.1\|905703_906243_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
LS483328.1\|SQF05379.1\|909827_911969_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05365.1\|893556_894993_+\|backbone-pilus-subunit-(T6-antigen-like)	unknown	unknown	gnl\|CDD\|374637
LS483328.1\|SQF05372.1\|900836_901214_-\|ISSpo8-transposase	unknown	unknown	unknown
LS483328.1\|SQF05373.1\|901695_905415_+\|cell-surface-anchored-pullulanase	unknown	unknown	gnl\|CDD\|273973
LS483328.1\|SQF05383.1\|916931_920576_+\|ATP-dependent-nuclease-subunit-A-AddA	unknown	unknown	gnl\|CDD\|274299
LS483328.1\|SQF05378.1\|908387_909821_+\|CotH-protein	unknown	unknown	gnl\|CDD\|378045
LS483328.1\|SQF05376.1\|906995_907691_+\|VTC-domain	unknown	unknown	gnl\|CDD\|143622
LS483328.1\|SQF05368.1\|897890_899123_+\|cell-surface-anchored-protein	unknown	unknown	gnl\|CDD\|223021
LS483328.1\|SQF05377.1\|907704_908382_+\|membrane-protein	unknown	unknown	gnl\|CDD\|379819
LS483328.1\|SQF05364.1\|891571_893542_+\|collagen-binding,-ancillary-pilus-subunit-Cne	unknown	unknown	gnl\|CDD\|377553

Protein	Function_ID	Function_description	E-value
LS483328.1\|SQF05382.1\|913648_916942_+\|ATP-dependent-nuclease-subunit-B-AddB	gnl\|CDD\|274291	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important; this model represents specifically RexB proteins as found in Streptococcus and Lactococcus. [DNA metabolism, DNA replication, recombination, and repair].	0
LS483328.1\|SQF05381.1\|912115_913510_+\|glycosyl-transferase-family-protein	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	1.67329e-55
LS483328.1\|SQF05366.1\|895071_895881_+\|sortase-SrtC1	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	1.43809e-79
LS483328.1\|SQF05370.1\|899842_900130_-\|Uncharacterised-protein	gnl\|CDD\|349562	cd18253, BTB_POZ_KLHL24_KRIP6, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 24 (KLHL24). KLHL24, also called kainate receptor-interacting protein for GluR6 (KRIP6) or protein DRE1, is necessary to maintain the balance between intermediate filament stability and degradation, a process that is essential for skin integrity. KLHL24 is a component of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that mediates ubiquitination of KRT14 and controls its levels during keratinocyte differentiation. It contains a BTB domain and kelch repeats, characteristics of a kelch family protein. The BTB/POZ domain is a common protein-protein interaction motif of about 100 amino acids.	0.00177142
LS483328.1\|SQF05367.1\|896195_897806_+\|Mac-family-protein	gnl\|CDD\|370249	pfam09028, Mac-1, Mac 1. The bacterial protein Mac 1 adopts an alpha/beta fold, with 14 beta strands and 9 alpha helices. The N-terminal domain is made up predominantly of alpha helices, whereas the C-terminal domain consists predominantly of beta sheets. Mac 1 blocks polymorphonuclear opsonophagocytosis, inhibits the production of reactive oxygen species and contains IgG endopeptidase activity.	1.22816e-41
LS483328.1\|SQF05375.1\|906232_906868_+\|membrane-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	1.66238e-08
LS483328.1\|SQF05374.1\|905703_906243_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	3.01174e-36
LS483328.1\|SQF05365.1\|893556_894993_+\|backbone-pilus-subunit-(T6-antigen-like)	gnl\|CDD\|374637	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain. GramPos_pilinBB is one of the major backbone units of Gram-positive pili, such as those from S.pneumoniae. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three transthyretin-like, CnaB, domains along with a crucial N-terminal domain, D1. The three Cna-B like domains are stabilized by internal Lys-Asn isopeptdie bonds, Gram-positive pili are formed from a single chain of covalently linked subunit proteins (pilins), usually comprising an adhesin at the distal tip, a major pilin that forms the polymer shaft and a minor pilin that mediates cell wall anchoring at the base.	2.85776e-19
LS483328.1\|SQF05364.1\|891571_893542_+\|collagen-binding,-ancillary-pilus-subunit-Cne	gnl\|CDD\|377553	pfam05738, Cna_B, Cna protein B-type domain. This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.	1.85403e-29
LS483328.1\|SQF05383.1\|916931_920576_+\|ATP-dependent-nuclease-subunit-A-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
LS483328.1\|SQF05378.1\|908387_909821_+\|CotH-protein	gnl\|CDD\|378045	pfam08757, CotH, CotH kinase protein. Members of this family include the spore coat protein H (cotH). This protein is an atypical protein kinase that phosphorylates CotB and CotG.	7.84097e-70
LS483328.1\|SQF05376.1\|906995_907691_+\|VTC-domain	gnl\|CDD\|143622	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.	3.97254e-64
LS483328.1\|SQF05368.1\|897890_899123_+\|cell-surface-anchored-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	6.9146e-16
LS483328.1\|SQF05377.1\|907704_908382_+\|membrane-protein	gnl\|CDD\|379819	pfam16316, DUF4956, Domain of unknown function (DUF4956). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	2.93517e-08
LS483328.1\|SQF05373.1\|901695_905415_+\|cell-surface-anchored-pullulanase	gnl\|CDD\|273973	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae () and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (.	0

>LS483328.1|SQF05373.1|901695_905415_+|cell-surface-anchored-pullulanase
MKRLRENQALFEERQLFGIRKLKLGVASVAIAAAFSLGTASGHTTVAAESLTSVEPIDGAVMVKSGAADQEQGSNELPEATDISDIAGTSDVTKVSAAVNADTVKEVQPVAVPLVEDQAQAEATDQSQPSSSIVPVTTDSSLETPEATSSEEPIAEQTLRLHFKTLPAQDLSSLGLWVWDDVETPSDQLGGWPTGATNFSLAKTDDYGYYMDVKLSANQANKVSFLINNTKGDNLTGDRTIDLLSPKMNEVWIDGQELSYYRPLAQGYIRINYYRSDGHYDNKSLWLWGSADASMTSQQGAWPDGIDFKQVGRYGAYIDVKLADTNELGFLLLDERHTGDAVKIQPNDYKFRDLTKHTQIFLKDEDPTIYTNPYFVNTVRLIGAQQVSSSSIEASFTALAGLDKEGLLKELKVSTGSKEAVAITAIQVDEKANRIIITGDFKPADTPYTVTFHQDSLQARPSWQYKDSLYAYDGELGARVREAGAKVDLTIWSPSADTVSLVLYDKADQTKVVGKIALTKGDKGEWSTTLSADSGLGISDYRGYFYHYEITRNGKAVLVLDPYAKSLAAWNSELAKTDPSYKVAKAAIVDPAAIGDKELAFADIKGFHKREDAIIYEAHVRDFTSDQAIANDLKAQFGTFAAFVEKLDYLKELGITHVQLLPVMSYYFVNELANKERMLTYSSSDNNYNWGYDPQSYFALTGMYSTDPTDPAKRIEEFKQLVNEIHKRGMGVILDVVYNHTANVDIFEDLEPNYYHFMNADGTARTSFGGGRLGTTHYMSRRVLVDSITYLVDEYKVDGFRFDMMGDHDAAAIEKAFLAAKALNPNIIMLGEGWVTYQGDEHMPEQPADQSWMSQTDTVASFSDDFRNQLKSGFPNEGSPAFITGGARDIMTIFHNIKAQPTNFLADDPGDVIQYIAAHDNLTLFDIIAQSIKKDPSVAANAAEIHRRLRLGNLLVLTSQGTPFLHAGQEYGRTKQFKDEAYKGKVADDKVPNKSHLLVNEDGTPFEYPYFIHDSYDSTDAINHFDWAKATDTERYPESTTSQAFTKGLIALRRSTDAFRLASKAEIDQKVKLITVPNEHGIKAQDLVIAYQTIASNGDIYAVFVNADSNDRTIRLTGKFQALLAGEVIVDAKQAGTEALASPEGVVLTKDGVKLSGLTATIIRLRASQFDKGTLGAMTDQAAHHQEKLVAAQTAGEVSQFSAKTLPKTGTSQLDALLALAGSGILAGLGGLVSKSKRR
>LS483328.1|SQF05372.1|900836_901214_-|ISSpo8-transposase
MMTFEFTSLFDLQTAFPTEQACINHLENIIWGDVVISPFDATSKVYKCKGNKYRCKNTGKYFTVKTGTLFDNTKIKLQKWFMAIWLVTSHKRGISSVQLSKEIAVTQKTAWFMLQRIRKCFGSEN
>LS483328.1|SQF05371.1|900129_900585_-|Uncharacterised-protein
MVKHAKTNLHFELERSISRKVDSKLIAYQVSLSDGFYDKYTKLWDKTYSFDFVINHRAFYAQLTKRCVYDVLLQTLEKISRKAIAKQLAELEALVDVSESKEDFQIFFEKKYKLSFPDLKNCVYPKKKEFSDFDQNLWIALHYNPRKERDT
>LS483328.1|SQF05370.1|899842_900130_-|Uncharacterised-protein
MTTWYDYMVRASEHAGSDGDLWLRYLYKIIKDGETKLTTDDVEQLLKNPNLTPFQKVTLQDALTEGTHTREHVLQANRKSQPKDILKLFREGNYG
>LS483328.1|SQF05369.1|899301_899850_-|Uncharacterised-protein
MDKKILFKALNTELAKENISLDIICVGGFVLEYYNLRGTQDVDAFYQESVNIRQMIKKVGDEFGVNEPDELWLNNSVANLNRIPPKTICETVFHYSNLIVLVPPLSYILGMKLESGRDRDRQDAGDIIKLANIRSPKKLINTLEEYGFQPDISMILEVFEIAYGMEWLANYMSEHPEEFRHY
>LS483328.1|SQF05368.1|897890_899123_+|cell-surface-anchored-protein
MLTNQTGYRHRLSKQKLPISMVSCLLGMGVFISPTSISADSPPTITIKSAADKDISSNLPKAPLSNAKPEEKLEDTPQLPNEKGYGNDIRDLGKPEDLPKLPDEKGYGNDIRKPEKTPELPNEKGQGDDLKKDEDLKKQRRELTEKLRGLKTVEEVLEFLKMPIPGFVTDVDWQFLMAFVEKGTANKTFEKDKLTLLDIYSTSSGHMIWLGYLVPEKPEPMPEPKPMPKPMPKPEPKPMPKPEPMPKPEPKPMPEPKPMPEPKPMPEPKPMPEPKPMPKPMPKPEPKPMPEPKPMPEPKPMPEPKPMPKPEPKPMPKPEPKPMPEPKPMPEPKPMPEPKPMPKPEPKPMPKPEPMPKPEAQKGDKPAVPKAMEHKLPSTGEVTAPFFTAAALAVLASLGVAAVSRKRKKH
>LS483328.1|SQF05367.1|896195_897806_+|Mac-family-protein
MKKQSFTHSRKPKFGMRKLSIGLASCMLGMMFLTTSHVSGEVVEVWPYGQNPHSGTIGVDPGQQNLDTALGRRKAEERVKETLWVDGVKVDDKDFENIKDDRTKSDYFVSEYGKGSGYYDVNKKFDGHDNLLCSGAVATNMFHWWVDQNKGYIEKFKKQDPENNGFVKFNDGYKKSVDELKEFYRDNRDNYTDQSKFFDLIKSSFYNGSLIPEQVLNLYFNGWEYGTKQSDIKEKNEKLDNPSSKGIFNKVFEGKLLSDKIPFYGIDDFSTEIKNALSSHKALGLSYRTLVRYGHIVSVWGADIGEDGRVKAVYVTDSDDRDAKTNNNKRVGLIRYSVKQDSNGKIRLTGYTGEDVGALSMHLYTLSSAKEEWEDYFKKYPEVQENLENNVADSNKNSEDVEVSSVEFDFLNFKYPKNGDQVSTEGMRLTLKDTNVFNQLQAEVSFEEEDGNGWKKKDSGTFEEGKKYRLRIDVNKLALKIYGHLSKNKLNVIVNGKAVNIQEIKKGSVETSFTMYSDSIGLEEINYWTDSFDNWS
>LS483328.1|SQF05366.1|895071_895881_+|sortase-SrtC1
MKKSVIFWSVILVAGCLIVLYPTLSNYWNAQHQSQLIADYISSTQALRHKDSQLMLEAANQYNQQLKANHDPDLTLTDSEAEAYQQQLDLTNTGIMAYIDIPKVHERLPIYHGTDEEILQVAIGHLAGTSLPVGGKGTHAVISGHRGLPSAKLFTNIDKLRINDTFTITSLNRTMTYQVDKITTVLPDDVSLLRIEEGKDLVTLVTCTPYGVNTHRLLVRGHRIKTATPAAARGSQKPSRLILWLLLISALGLSLVLIGTWRWCRRSKA
>LS483328.1|SQF05365.1|893556_894993_+|backbone-pilus-subunit-(T6-antigen-like)
MKTIKLILTSLLVTFLTMLSGKAFADTASYTITVEGATAGHTYEAYQIFKGDLFDSTLSNITWGGGVTPFEFDGSKDAAKIAEGLKEANAADFAKEAGKHLTTVVAGQGEQTITVNEAGYYLIKDKNDSQTGKHDAYTSFVLKVVKNTSFKPKSAIPTVLKKVKDRNDKTGLETDWQDSADYDKGDKVPFQLTATLPSNYDAFQEYYLEFVDTLSAGLSYNKDAKVYVVNGDSRQEITGSFTINENGSSFKINNLKTVADVTATSTIVVEYTATLNDQAAIGKKGNPNEVALKYSNDPNALGKGEESPKGETPKDKVIVFTYKTIINKVDQDQKALKGAGFTLYKLVKGDNGEEKYQIVQEIKAGDTTSFEFVGLDAGDYKLSETTTPGGYNTIADVMFSIVAQHETESDDPQLTSLTVEKATGFIADTEAGTVSATVVNKKGSILPSTGSIGTTMLYVCGVMLMIVSTLFIFRQKQQ
>LS483328.1|SQF05364.1|891571_893542_+|collagen-binding,-ancillary-pilus-subunit-Cne
MKQLTKIVSVVLLLLLTLSASLPKVRATNISDNITSLTVASSSLRDGERTTVKVAFDDKKQKIKAGDTIEVTWPTSGNVYIQGFNKTIPLNIRGVDVGTLEVTLDKAVFTFNQNIETMHDVSGWGEFEITVRNVTQTTTETTGTTTVRVGNHTATINVTKPEAGTGTSSFYYKTGDMQPDDTDHVRWFLLINNNKEWVADTVTVEDDIQGGQTLDMSSFDITVSGYRNERFVGEKALEEFRQKFPYSTITADDKTGHIHVSLDKDDASKNTVNVAYKTKITDYDQKEFANNSKIWYQILYKDQVSGQESNHQVANVNANGGVDGSRYTSFTVKKIWNDKENQDGKRPKTITVQLYANDQKVNDKTIELSDTNSWQASFGKLDKYDSQNQKITYSVKEVTVPAGYQSQVEGDSGVGFTITNTYTPEVISITGQKTWDDKENQDGKRPKEITVRLLANNVATGDVTTASVKTGWKYTFTNLPKYKDGKQITYTIQEDSVADYTTTIQGFDITNHHEVALTSLKVIKAWNDKDDYYHKRPKEITISLKADGKVIREHQMTPDQQGKWEYTFDQLPVYQAGKKISYSIEEKQVDGYQAPVYDINEDLNQVTVTNTINQSYSLPDTGGQGVKWYLLIGGSIITVACLVLISLYQKHKHHNM
>LS483328.1|SQF05374.1|905703_906243_+|RNA-polymerase-sigma-factor
MIKGVLRGDKLLEFEDIYLEYKDDVYRFVNKLCCYQNSLSDDITQETFLKAYRNIAKFRGDSSIKTWLFTIAKNTFFTEIKKKKYENMSMESLEIVDAKGHDEPLDKIERRELLEITLTIIFNLPEKMQAVFLARIYSGDSYEKIAKDIGITVSSAKVLVFRARKHIKRQLREEYGYEV
>LS483328.1|SQF05375.1|906232_906868_+|membrane-protein
MRYDCELIQDLLPLYVDDTLSDYSRAVVEAHLTSCKDCQIDLADLRQDYSKVEEELQEYQAEVCAFSRFIRKQRQQMIVATISICLVTGILSSILTAHRIRAPYDYVAIDVGEHTQLNKEGLLSTARTTAKDHVALVYKHKAQKVNGSFEISELQARKIQQQLKQAMLKEANATDISSRQLDQSQKRLSCNQDDQLVYIISTDGRIYYFGR
>LS483328.1|SQF05376.1|906995_907691_+|VTC-domain
MNEVLRQEKKYLITIEDYYRLSHEFSKLLRLDAHSSSEGYVIRSLYFDSLEDVDWQEKEDGIELRRKIRLRNYGSQSSFAKLEMKQKQGSNQKKRSLRLTRADAQLLIKGDRSILLTYPDRFAAECYSRMSMQLYQPKTVIEYQRKAFVAKENNIRITFDHHIIGSETNADIFSDHLPQNYLLDPYLVILEVKYNGFLLSYIKKLLESVNGSELSASKYCMGRAISKHYRF
>LS483328.1|SQF05377.1|907704_908382_+|membrane-protein
MKQLLRHVFEQHGTLSFQDVLLHIVAAALLSIVIYMSYAYTHTGTAYSKKFNVSLMTLTVLTATVMTVIGNNVALSLGMVGALSVVRFRTAIKDSRDTVYIFWTIVVGICCGVGDYTVAATGSSVIFLLLLLMGAVRNDNRLLLIVRCDKQMEIELERLVFNYFSGKAIQRVKNTTSDDIEMIFELSKKDYDSTYQQDNQLTEAVYQLGRVDYFNIVSQSDDITG
>LS483328.1|SQF05378.1|908387_909821_+|CotH-protein
MKEKTIYMIVLVCLLLAAICGIGFPKTSAKRIHHHLQTVKKSSRSTGEFSSHLPIISIDTHHQQIPEQREYEGETKRQKTIKTTVSLRDQLDREHSLSESPRLSLTALIAYRGNSSRHFDKKSLKLRFINKRAQPKAVSLAGMSKESEWVLHGPFLDRTLVRNYLSYNIAGEIMTYAPNVRYCELVVDHQYCGLYLAVESIEQGRHRVNIEKSDRKSDKTPYILVWDRRHKAKQALDHYVSYTNQAGLSSLDIKYPSLHRLTPKQKQFIEKDISHIEKLLYSYDLKQYTDYLDQESFADYFIINEFFRNIDAGKFSTYLYKDLRDKLKLVVWDFNNAFDNQIEAPYDEADFTLSDAPWFCMLLKDPSFVKLVVTRYHQLRQNVLSTDYLSKYIDATVAFLGPAIQRNYHKWGYVFTVPSRSDATNYLVPVSRNYRSYEASVKQLKDFIRRRGRWLDKHIETLYQYSAPSKNTNTLLE
>LS483328.1|SQF05379.1|909827_911969_+|Uncharacterised-protein
MKKYLIFVGLLLSVIGLSCYCCDIDGRLYLPVSNQSAIRTSFYAKDKRIYDQKGSPYLIKGVDVESSIAGYRQRDLSVDEKTYYRWFKQIAAMGANTIRVRVIMPAAFYHALSRYNDTASHSLYLLQGFRIDAYHDNSSISALDKAYLGTLLREARASVDVIHGRKRIWHSDLGLQHYDQDMSKWLLGYIVGDDWYSGTIAYTNHQNHAKPVGFKGRYYATTPQANRFEAILAEIMEEITSYESRKYGWQHLVSFSNTPQSDPFVYQDPFASQAAKYVQLTIENIKPSAKVKAGLFASYKLLDCHSAYRDYLLFDRLGLDDRLVGDIKRMPLYQGYVKLLTSYHRVPVVVTGYGYSTARGVDQMISTSSPLTEKDQGERLMADYTAFIASGCCGATIHSWQDDWTARSWNTSFATNRHQGFLWGDVQSKAQGYGLLTFEHAPRTHAIDGQKAAGEWSRALTYRKNGQQLLVDQDEKYLYIAIESTKKQPLQRQWLIPLDITPKTGSRVIEGFSARFDRFADFALVVDDHKGSRLLVQERYHATDANYLRQINGKDFYVFPPNKHTPRFTMVDMVMRNDGIFAAIDQVPIAKRGLKRYPTGQLKKGNGNRGSAHFDSQTDISFGEHLIELRIPWQLLNFSDPASNKIHDDYFEHYGVEELAIEAIAIGFAPLKESKVITMVEYPLLSWERPRVREVLKTSYQQVQAVWQEKRRK
>LS483328.1|SQF05380.1|911969_912092_+|Uncharacterised-protein
MIYYLLFFYIIVCLAILVFNIGYLMKQALRRFCQANGKHK
>LS483328.1|SQF05381.1|912115_913510_+|glycosyl-transferase-family-protein
MQLLFLVLKYSQYLFLAFLIAYASFLLLSLIVGAIHLYERRQQVPLGDDVSLPPVSILVPAYNEALTIIETVESLLMLDYGCYEIIVIDDGSTDHTAKLLKERFHLEAVTCSINQRIPTRPLKAVGQKQLKHVKLTLLEKANGGKGDSLNLGINAAQYDYFLCMDADSMLQEDSLKRIAKTAAKDPSVIAVGGMVKVSQGVELAAGRIVDYHLPRQLISCAQAIEYDCAFFGARVLLDQAAGNLIISGAFGLFKKELAIAVDGYDTGTLGEDMELVMKLHFFCQNNKIPYRIGYETDAICWSQAPSRLKDLCQQRRRWFLGLYQCLKKYLQFFVSGRFKVTVLISYVLYLLFELLSPFIEAFGVIIIVLSLLCHQLNTTFFVSLMLLYICYCVLIALTSFLNRVYLQNNSSITFFDMVWVIYAAIYQCLVLHTVLTLVKVSSFIGYQRKKNAWGQITRDKHKAA
>LS483328.1|SQF05382.1|913648_916942_+|ATP-dependent-nuclease-subunit-B-AddB
MGKARLICYNGDVDVVSGPSKRSFMKLLYTEISYSMTEILVKEARAYADKGYRVFYIAPNSLSFEKERSVLALLPEQGSFAITVTRFEQMARYFTLAKAANRQALDDNGLAMIFYRVLMQLQEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQEDLITIMTKAEQLMAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALLNEVCEEIVIGAYISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPIYTTSEKVFDVSFSRLTQLLEANHDYSKLDWQLSAKDKSKVVIWQALNQKEELEHVAKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPLVQFVESLERGRRYNWRREDIVNLLKSGLFGRFQEGELDQLEQYLVFADIQGFTKFSRPFTLNSSRQYPLPLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIRLADNFEALAGSRREADREKDEEVWKAFTGILETFYQVFGQEKMTLADCLALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISDQERASINEQTASYQRLDVPSFENIKKNHQTALSLFNAATQELVLSLPTSLTNSSDDVSPYLKELIALGVFVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADEMTDEDRNFWTVALRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFPSQQPLSLSSSALTVFYNNQYKYFLKYVLRLQEPESIHPDARIHGQYLHRIFELVTKDRSNAAFDQKLGAAIAAVNQQSAFQQVYQADAEGRYSLEVLKGIAYSTAPVLNLNQGMQVAKQEEAFELALGHQALIRGVIDRIDQLADGRLGIVDYKSSARVFDIGAFYNGLSPQLVTYLAALKNKGQGLFGAMYLHMQEPRLSLSDFKVLDDQLVAAAYKELTYKGIFLAQAKEYLANGSYHLNNTLYETDELETLLAYNEQLYLSAVKQIKTGHFLINPYTADGKSVQGDQLKAITRFEADLDLGYARRLVVLPAKERRQAFLTRMNEEIKHED
>LS483328.1|SQF05383.1|916931_920576_+|ATP-dependent-nuclease-subunit-A-AddA
MRIDEGFLTPEAIARLQQEEALSDKRHKRTAQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGISVDRLFISTFTVKAATELIERIEKKLHTAIAETQDYQLKAYLNDQLQALSQADIGTMDAFAQKLVHQHGYVLGISPHFRIIQDKAEQDILKREVFRQVFEDYMSQTDNKAFIQLVQNFSGRRKDSSAFREIVDSIYAFSQSTANPSSWLAEVFLRGAKTYTSFADIPDQVVDALLACMQDTADQLRDLTDMEGYAQTTKAGKLTAKYTKHLKMIDNLYEWASHFDSLYGKERLGQLAQELTALLPSGADITVAGHKYPIFKSLQEQLVGFRHLETILAYQQESLPLLEVLQAFVISFSEAYLAAKMQENAFEFSDIAHFAIEILQQAPDIRQAYQGHYHEVMVDEYQDNNHMQERLLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQSNPEHGKLILLKENFRSQSEVLNVTNAVFSRLMDESLGEITYDDKHQLVAGSEAQKQLHPENRAQLLLYNTDQAQEGTEEASTNDGISAGEVTLVAKEIIRLYNEEKVAFEDITLLVSSRTRNDTIFQVFNQYGIPLVADGGQENYLKSVEVMVMLDTLRSINNPLNDYALVALMRSPMFSFDEDQLARISLQSSSQDQPQAFYDKLSNSLRGQGEHPGLIGQELMTKLVDFDRTLRDWRQFAKLHSLYELIWKIFNDRFYFDFVASQPKAEQAQANLYALAIRADQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVERPKHAVNLMTIHKSKGLEFHYVFILNCDKRFAMADLQAPIILNRDEGIGIKYVANVKELLRDEKLASLKVTMETLPYQLNKQQLRLATLSEQMRLLYVAMTRAEKKVYLVGKASKEKIQAKTADNSSEGRLALASRERLLSFQDWLLAITATFSKEDLFIDVRFVDDSDLTPEAVGQLRSSGLLQADDLKDNRQTEDIARALDMLDKVSKLNASYQAAIELPTVRTPSQLKTLYEPLMDTDGVDIIDQPYHSPKSFDLPDFSKKKAVEPSQVGSSLHELMQRIPMSDQVTAGDIEQALQLVSADAEVKARLDIKKVTAFFATTELGKLLQEHHQRLHREAPFAILKKDSLSQEQYVVRGIIDGYLLFEDRIVLFDYKTDRYQQSAELKQRYQQQMDLYAEALSQSYGIARIEKYLVLMGGSQLEVVRLDE

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Crispr_ID: LS483328_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483328_3

1475101-1475400

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	CRT
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	PILER-CR

4 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LS483328_3

>merge|LS483328|3|1475101-1475400|CRISPRCasFinder,CRT,PILER-CR
ATATTAAAACTATTCAAAACAGCATAACTCTAAAACATAAAAGGATCTAGAATAACAGCTCCTTTGGTTTTGGAACCATTCAATACAGCATAACTCTAAAACTAGCGTGGATGGGCTTAAAAGAGGGCCACGGTTTTGGAACCATTCAATACAGCATAACTCTAAAACAGATAGCTTGAGCGATTTCATCGTTGAGCTGTTTTGGAACCATTCAATACAGCATAACTCTAAAACTGATAAGCATTTTGATTTAGCTATTGTTGAGTTTTGGAACCATTCAATACAGCATAACTCTAAAAC

>LS483328|3|3|1475101-1475400|CRISPRCasFinder
ATATTAAAACTATTCAAAACAGCATAACTCTAAAAC	ATAAAAGGATCTAGAATAACAGCTCCTTTG
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	TAGCGTGGATGGGCTTAAAAGAGGGCCACG
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	AGATAGCTTGAGCGATTTCATCGTTGAGCT
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	TGATAAGCATTTTGATTTAGCTATTGTTGA
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC

>LS483328|3|2|1475101-1475400|CRT
ATATTAAAACTATTCAAAACAGCATAACTCTAAAAC	ATAAAAGGATCTAGAATAACAGCTCCTTTG
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	TAGCGTGGATGGGCTTAAAAGAGGGCCACG
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	AGATAGCTTGAGCGATTTCATCGTTGAGCT
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	TGATAAGCATTTTGATTTAGCTATTGTTGA
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC

>LS483328|3|2|1475167-1475400|PILER-CR
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	TAGCGTGGATGGGCTTAAAAGAGGGCCACG
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	AGATAGCTTGAGCGATTTCATCGTTGAGCT
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	TGATAAGCATTTTGATTTAGCTATTGTTGA
GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483328.1\|SQF05938.1\|1476683_1477553_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LS483328.1\|SQF05928.1\|1462527_1463337_+\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|182509
LS483328.1\|SQF05930.1\|1464550_1465786_+\|peptidoglycan-branched-peptide-synthesis-protein	unknown	unknown	gnl\|CDD\|367067
LS483328.1\|SQF05943.1\|1483974_1484427_-\|membrane-protein	unknown	unknown	unknown
LS483328.1\|SQF05936.1\|1475675_1476350_-\|CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LS483328.1\|SQF05944.1\|1484568_1484937_-\|membrane-protein	unknown	unknown	unknown
LS483328.1\|SQF05931.1\|1466024_1466783_-\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
LS483328.1\|SQF05927.1\|1461001_1462303_+\|phosphohydrolase	unknown	unknown	gnl\|CDD\|224004
LS483328.1\|SQF05940.1\|1482556_1483144_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05941.1\|1483183_1483360_-\|putative-transposase	unknown	unknown	unknown
LS483328.1\|SQF05929.1\|1463336_1464551_+\|peptidoglycan-pentaglycine-interpeptide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225224
LS483328.1\|SQF05933.1\|1469193_1472340_+\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|367432
LS483328.1\|SQF05932.1\|1467048_1468245_-\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
LS483328.1\|SQF05934.1\|1472629_1473718_-\|membrane-protein	unknown	unknown	gnl\|CDD\|379376
LS483328.1\|SQF05937.1\|1476342_1476687_-\|CRISPR-assocaiated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483328.1\|SQF05926.1\|1460534_1460921_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|378129
LS483328.1\|SQF05945.1\|1485127_1485550_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05942.1\|1483507_1483966_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483328.1\|SQF05935.1\|1473701_1474172_-\|RNA-polymerase-sigma-factor-protein	unknown	unknown	gnl\|CDD\|274361
LS483328.1\|SQF05939.1\|1477552_1481599_-\|CRISPR-Associated-Protein-Csn1	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044

Protein	Function_ID	Function_description	E-value
LS483328.1\|SQF05938.1\|1476683_1477553_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	6.18158e-127
LS483328.1\|SQF05928.1\|1462527_1463337_+\|haloacid-dehalogenase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	1.21454e-107
LS483328.1\|SQF05930.1\|1464550_1465786_+\|peptidoglycan-branched-peptide-synthesis-protein	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	4.72688e-163
LS483328.1\|SQF05936.1\|1475675_1476350_-\|CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.83426e-109
LS483328.1\|SQF05931.1\|1466024_1466783_-\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	3.45341e-146
LS483328.1\|SQF05927.1\|1461001_1462303_+\|phosphohydrolase	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	9.37547e-157
LS483328.1\|SQF05929.1\|1463336_1464551_+\|peptidoglycan-pentaglycine-interpeptide-biosynthesis-protein	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.3204e-134
LS483328.1\|SQF05933.1\|1469193_1472340_+\|alpha-galactosidase	gnl\|CDD\|367432	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module. This family is the putative binding domain for the substrates of enhancin, and other similar metallopeptidases. This is not the enzymically active, peptidase, part of the proteins - see pfam13402.	2.13543e-15
LS483328.1\|SQF05932.1\|1467048_1468245_-\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
LS483328.1\|SQF05934.1\|1472629_1473718_-\|membrane-protein	gnl\|CDD\|379376	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal. This domain is found near the N-terminus of a sigma factor regulator. The N-terminus is responsible for interaction with the sigma factor.	3.26339e-11
LS483328.1\|SQF05937.1\|1476342_1476687_-\|CRISPR-assocaiated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.7275e-50
LS483328.1\|SQF05926.1\|1460534_1460921_-\|50S-ribosomal-protein-L19	gnl\|CDD\|378129	pfam09148, DUF1934, Domain of unknown function (DUF1934). Members of this family are found in a set of hypothetical bacterial proteins. Their precise function has not, as yet, been defined.	2.94876e-20
LS483328.1\|SQF05935.1\|1473701_1474172_-\|RNA-polymerase-sigma-factor-protein	gnl\|CDD\|274361	TIGR02950, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: SIGM_BACSU) and is activated by various stressors.	7.76752e-22
LS483328.1\|SQF05939.1\|1477552_1481599_-\|CRISPR-Associated-Protein-Csn1	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0

>LS483328.1|SQF05935.1|1473701_1474172_-|RNA-polymerase-sigma-factor-protein
MAYSKEIIAYLVRSGVAKELARDISQDVLLKMLESDLALPPEKIRAWMYRVAVRKYIDQYRRDKAYLDILQRDFFHQERVVEFDQPNYEPLYTAVNELPEKYRWVLSLYYFQDLSVKEVASLLHWSVSSVKVNLMRGRRCLKEKLKKAGYTYDDFK
>LS483328.1|SQF05934.1|1472629_1473718_-|membrane-protein
MTISNDFEAIAKRHKRRLTLKYVVLSAGLALVALVLGYMGLNRLTSINGQYLMAYYNNRIQIAYPNIDVNSFFYNANSQFTGELHSERTKDIDGISVPFEPYRAPYSLVLRRTDSSNEYLVSGDDGRSTYTRGAHYKMPRFFNTKAKITESNHDKPTQDLDFIADMSGQAVEVAITFDKPYLLSDIVKLVPDQLKLNWIWIGTESSYDTSGLFPANLYGFKPNWKANMTYKEQKQLDKKINDILKKDSEADLSKLNAAYDKQVSPTVALQNSYDTFRHYLEEAADNHWINSTYGGANGSHLSEQEDVALFLKNNRNVKTAKFAGIILTGKAEQFASLKTADWIYASNIGQSVTIQPYHQLTK
>LS483328.1|SQF05933.1|1469193_1472340_+|alpha-galactosidase
MKLKKIIALACVGILTLHQLSPAIVYATTDASDGTAATVNTGDTAAPSAEAKPSQLMTDTQALFTDHSFSKLASNVTQEKIDALKQKATASTEPEKEQILGLLDKAASLLQQFTLQGLGNGVFAQLYFYADGSYTANLVTKKGQPHSYFSTNYATVTILNDKKETVYSKEYVGNVSQVAQTEELELKEGYYLIINKQEPNRFYTNHNDALKQNNTNPYTYVVRDGQLERIDDSNRTLRFLGLGNAEYATLRVDYNASTLTLKTKQTKPHVYFSGSYEKLEVLDTENQVIYTKDFIGTQVLEAKTETIPFKVGYKIRLTGSEHHTRVKFYDDYAVEAPLTLSKNQATLKLLDHSLELMRSKTGSELESEVLTLFTDESTSKLASNVTQEKIDALRQKVTASTEPEKEQILSLLDKAASLLQQFTLQGLGNGVFAQLYFYADGSYTASLVTKKGQPHSYIANNYATLTILNDKKETVYAKEYVGNVSQTAKTESLTLKEGYYLIINKQEPNRFYTNHNDALKQNNTNPYTYVVRNGQLERIDDKNRTLHFLGLGNAEYATLKIDYNASTLTLKTKKTKPHVYFSGTYEKLEVLDLKDKVVYTQDFIGNQVLTAKTETIPFKVGYKIRLTGSEHHTRVKAYDEENKAVSLSLPKNKAEIRITKGGLASVFALEAKATNTLVQAVEKRLTKEKIEDFKKKDNKHKAFIDWLLKDNEAMQLYLGAGYAHSAAQGGMSSYQFKNTYNLTNELEALELWFKIWDKYKASHQGIQLKMAIAVALEFTKPVGAWYNESQKIDPLERFVTFAEAEQGNVLFEDFYSLTVEQIRNVVNAKITDEDMKWLRQYVETNKPAMINRNDITKGYSLISYVGTNPETGVSVHSSGFYGPNPTIKEVIKYGGVCGAMSKLSSVLAQAYGVPAFPIGQPGHCAYIYLNADHTYQLGYDVSGWTGCGNYNTTLPYVQIHNVYSLNIDAYNASEYERYKAEAATDKETKLNHLDAALKAEPLNYKAWNDKLALVASDQTAYQSTLNDMKSALKDYPVIINNLEKDTKQ
>LS483328.1|SQF05932.1|1467048_1468245_-|elongation-factor-Tu
MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSVNQPKDYASIDAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKVDLVDDEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIMELMDTVDSYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIRDEIKKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVIAKPGSINPHTKFKGEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGIVSEIEA
>LS483328.1|SQF05931.1|1466024_1466783_-|triosephosphate-isomerase
MSRKPIIAGNWKMNKNPQEAKAFVEAVVSKLPSNDLVDVAVAAPAVDLVTTIEAAKDSVLKVAAQNCYFENSGAYTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKTIFANGLTPIICCGESLETYEAGQAVAFVGAQVSAALEGLSAEQVASLVLAYEPIWAIGTGKSATQEDAQSMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENIKEYMACPDVDGALVGGASLEADSFLALLDFVN
>LS483328.1|SQF05930.1|1464550_1465786_+|peptidoglycan-branched-peptide-synthesis-protein
MALDIIDKETFGSFCSQVEYKSFIQSIEMAELLQKRGYQTQYLAISDQKDIKVAAILYSVAMAGGLRMEINSGPVVADATYTTAFYKALQDYAKQQGALELVIKPYDTYQTFTSDGHPNDDEKPELIKTLIELNFTHDGLLTGYHNGEGDWHYVKDLSGLTSANVINSFSKKGKALIKKAKTFGIKLHKLNRDELTQFKAITAATSSRRDYTDKPLSYYQDFYDSFGDSCEFMVATLNFDDYLANLRHSQDRLKQGMAKLEADLAKNPRSEKKQNRLRELSSQFDTFQVRVAEAQELIIKYGKKDVPLAGSLFVYTPQEAVYLFSGSYPEFNRFYAPALLQEHVMLRAIEKGISCYNFLGIMGEFDGSDGVLRFKQNFNGYITRKMGTFRYYPKPFKYKAIKTIKALIGRS
>LS483328.1|SQF05929.1|1463336_1464551_+|peptidoglycan-pentaglycine-interpeptide-biosynthesis-protein
MYTYKIGISAKEHDQFVLSHPQVNLLQSAHWAQVKDNWEHELIGFYQDDKQVAAAACLIKRLPLGMTMIYIPRGPIMDYSDFELVNFVMTSLKAYGKSKRALLIKYDPSLFISQALIGEERTDNDFTLSTIDFLKTIGVEWAGRTKELEQTIQPRFQANIYAKDFKLQSLSKKARQSIRTAQNKGVEIIIGSTELLEDFSALMKKTEERKHISLRDISYYDKLMTTYANQAYITMARLNLPKQKALIQQQLEEALSNQQAFTQHSKPGKIAENQNTIKRLEKELAFLDKEIQAGKSLVPLAATLTLIYGQTSENLYAGMDNDFRQYQAALLTWYHTAEEAFKRGCQWHNLGGVENQLDGGLFQFKARLNPAIEEFAGEFSIPVGPISKVAMIAYNLRKKLRSNP
>LS483328.1|SQF05928.1|1462527_1463337_+|haloacid-dehalogenase
MSIKLVAIDIDGTLLTDDRRVTNDVFDAIQEAKAQGVHIVIATGRPIAGVISLLEQLQLNQMGDHVITFNGGLIQDTATGEEVVKELMTYDDYLDIEYLSRRLGVHMHAITTEGIYTANRNIGKYTVREARLVDMPVFYRTPEEMADKEIIKMMMIDEPDLLDKAIKQIPQAFYDTYNIVKSTPFYLELTPKTVSKGTAIGHLAKKLGIDMSQTMAIGDAENDRAMLEAVANPVVMENGAPELKKLAKYITKSNNDSGVAHAIRKWVLN
>LS483328.1|SQF05927.1|1461001_1462303_+|phosphohydrolase
MNEKVFRDPVHNYIHVNHQLIYELINTKEFQRLRRIKQVPTTAFTFHGAEHSRFSHCLGVYEIARRVTEIFEEKYADLWHKEEGLLTMTAALLHDIGHGAYSHTFETLFDTDHEAVTQDIITSPETEINAILTRYSPDFPDKVASVINHTYPNKQVVQLISSQIDCDRMDYLLRDSYFSAANYGQFDLMRILRVIRPVKDGIAFDLSGMHAVEDYIVSRFQMYMQVYFHPASRAVELILQNLLKRAKALYPSQQDYFQKTAPGLIPFFEKSFTLADYLYLDDGVLNTYFQQWITSEDHILSDLSSRFINRKILKSVTFDQESQQDLERLRKLVEAVGFDPDYYTGIHVNFDLPYDIYRPELENPRTQIEMIQKDGSRAELSQLSAIVKALTGTSYGDRRFYFPKEMLELDDLFTSDKEAFISYISNGHFHFNN
>LS483328.1|SQF05926.1|1460534_1460921_-|50S-ribosomal-protein-L19
MKIEINNKISYGQETELIKEVHTGDLRQKADATYLIYQNNDNERVVIKFNAAELTMSRFSKPQSVMRFLANKKTLIAIPTPVGIQQFLTDTSHFHLDHDQQTVTLDYALLQASTETAFAHYHLEIKWY
>LS483328.1|SQF05936.1|1475675_1476350_-|CRISPR-associated-protein-Csn2
MINFSLLDEPLKLEQMTILTVKDVRVFSSLIRNFYQYGESGDLKLFDHRLKGLKETELMIITDILEYDINSPTILKMVHADLEECFNEQSEVKSMLEKLAATITELIVFECLENELDLEYDKITILELIKALGVKVETQSDTIFEKCLEILQVFKYLTKKKLLVFVNSGSYFTREEFEQLKEYVELSNQTVLFLEPRPLYDFPQYILDEDYFLVTQNKLEGIEH
>LS483328.1|SQF05937.1|1476342_1476687_-|CRISPR-assocaiated-protein-Cas2
MSYRYMRMILMFDMPVDTVEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIRRLREQNPQKGNITLLTVTEKQFARMIYLHGEKNASIANTDKRLVFLGEAYSGDD
>LS483328.1|SQF05938.1|1476683_1477553_-|CRISPR-associated-protein-Cas1
MAGWRTVVVNTHSKLSYKNNHFIFKDAYKTELIHLSEIDILLLETTDIVLSTMLIKRLVDNNSLVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMAWSEELKADVWTQIIAQKMLNQSCYLGQCSYFEKSQAIMNLYHDLKSFDPSNREGHSARIYFNALFGNQFSREQDCDINAGLDYGYTLLLSIFAREVVICGCMTQFGLKHSNQFNQFNFASDLMEPFRPIIDRIVYDNRHKTFVQIKRQLLSIFSETYPYNGKEMYLSNIVSDYTKKVIKALNNEGEGVPEFRI
>LS483328.1|SQF05939.1|1477552_1481599_-|CRISPR-Associated-Protein-Csn1
MKKPYTIALDIGTNSVGWVVVTDDYRVPTKKMKVLGNTERKTIKKNLIGALLFDSGDTAEGTRLKRTARRRYTRRKNRLRYLKEMFTEEMAKVDDGFFQRLEDSFYVLEDKEGDKHPIFANLADEVAYHKKYPTIYHLRKELVDNPQKADLRLIYLAVAHIIKFRGHFLIEGTLSSKNNNLQKSFDHLVDTYNLLFEEQRLLTEGINAKELLSAALSKSKRLENLISLIPGQKKTGIFGNIIALSLGLTPNFKANFGLSKDVKLQLAKDTYADDLDSLLAQIGDQYADLFLAAKNLSDAILLSDILTESDEITRAPLSASMVKRYREHHKDLVTLKTLIKDQLPEKYQEIFLDKTKNGYAGYIEGQVSQEEFYKYLKPILARLDGSEPLLLKIDREDFLRKQRTFDNGSIPHQIHLEELHAILRRQEVFYPFLKDNRKKIESLLTFRIPYYVGPLARGHSRFAWVKRKFDGAIRPWNFEEIVDEEASAQIFIEKMTKNDLYLPNEKVLPKHSLLYETFTVYNELTKVKYATEGMTRPQFLSADQKQAIVDLLFKTNRKVTVKQLKENYFKKIECWDSVEITGVEDSFNASLGTYHDLLKIIQDKDFLDNPDNQKIIEDIILTLTLFEDKKMISKRLDQYAHLFDKVVLNKLERHHYTGWGRLSGKLINGIRDKQSGKTILDFLKADGFANRNFMQLIHDSELSFIDEIAKAQVIGKTEYSKDLVGNLAGSPAIKKGISQTIKIVDELVKIMGYLPQQIVIEMARENQTTAQGIKNARQRMRKLEETAKKLGSNILKEHPVDNSQLQNDKRYLYYLQNGKDMYTGDDLDIDYLSSYDIDHIIPQSFIKNNSIDNKVLTSQGANRGKLDNVPSEAIVRKMKGYWQSLLRAGAISKQKFDNLTKAERGGLTQVDKAGFIQRQLVETRQITKHVAQILDSRFNTEFDDHNKRIRKVHIITLKSKLVSDFRKEFGLYKIRDINHYHHAHDAYLNAVVAKAILGKYPQLAPEFVYGDYPKYNSFKERQKATQKTLFYSNILKFFKDQESLHVNSDGEEIWNANKHLPIIKNVLSIPQVNIVKKTEVQTGGFYKESILSKGNSDKLIPRKNNWDTRKYGGFDSPTVAYSVLVIAKMEKGKAKVLKPVKEMVGITIMERIAFEENPVVFLEAKGYREIQEHLIIKLPKYSLFELENGRRRLLASASELQKGNELFLPVDYMTFLYLAAHYHELTGSSEDVLRKKYFVERHLHYFDDIIQMINDFAERHILASSNLEKINHTYHNNSDLPINERAENIINVFTFVALGAPAAFKFFDATIDRKRYTSTKEVLNATLIHQSVTGLYETRIDLSQLGEN
>LS483328.1|SQF05940.1|1482556_1483144_-|Uncharacterised-protein
MIDKIKDILFDVRLSANKIENEIIFYNDFPEDSVSLSFADNKFVIEEIHRDNRIRLMETTSEYHAILYCVAILDQVFNTSRNIEITREIKAYIQEGNIIAVEQLLSEKLDPTLFSLGSVERDKLTLVKENNAYTLIFNDVQILTDLSSLRAYIVLFNCTKKLERAKELYARALHDLPDCKLEFNQFIECYLIGRN
>LS483328.1|SQF05941.1|1483183_1483360_-|putative-transposase
MGYDNTPYKPGTPVYEIELSEDTILVRVYDGEVLDQFVKYKPNGIDKYSIQELMDMVF
>LS483328.1|SQF05942.1|1483507_1483966_-|Uncharacterised-protein
MMFNIKKISYIIPGKVVYSTEGQEIKVQPSINSDITFLIAYLQLGFDSENMLSTQISGYLPSFNWETACLAKPLAVKGRLLLCRSDIEPGDSVRIPNVEYWKIQYDNASGWLRYGNVTDLRGITYVEIFQNELVGLNSEGHIEEIWLKPMWL
>LS483328.1|SQF05943.1|1483974_1484427_-|membrane-protein
MTKPTHNRQQLLKNLENSRLARQSSRFKSYVAREKLAKFRVATAELENNFENVRIKAFDLVLTDTVKNHSKDIIRKGKYVGQKARPYIENPGTQTLIQEIMDAEKPSVDKFLLNGLRWDVRGSFNGRSEGIWELVVDLETNRIVHFNFTR
>LS483328.1|SQF05944.1|1484568_1484937_-|membrane-protein
MDLALSLVTIAVGVAAIVMTAGAATPLVVGACVVGSCTVAYEASNLFEAGHNIYLGSVGDGLTVATNPLRDTLFMGNDRLYHQVGGLFTTASAALIPIGQTKSIAKGLTEFTIGEVGGFIGG
>LS483328.1|SQF05945.1|1485127_1485550_-|Uncharacterised-protein
MGITQITWEEYETFNKVETPDNLYIREHNGTYYTVFELGIASVRRIFEIKAIDFKEYMSGKHSADDLLFKSQNDCWPPTEEEKNRIMKERAKDRPMVLISNPKNQMLFTQEELRKLIPIAEQKWIDWKGKLPDDYISPLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483328_1	1.16\|575685\|34\|LS483328\|CRISPRCasFinder,CRT	575685-575718	34	LS483328.1	1000307-1000340	0	1.0

1. spacer 1.16|575685|34|LS483328|CRISPRCasFinder,CRT matches to position: 1000307-1000340, mismatch: 0, identity: 1.0

actttcattaagataggtcgtatctggtaagtaa	CRISPR spacer
actttcattaagataggtcgtatctggtaagtaa	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483328_1	1.6\|575023\|35\|LS483328\|CRISPRCasFinder,CRT	575023-575057	35	MK448862	Streptococcus phage Javan178, complete genome	35946-35980	0	1.0
LS483328_1	1.15\|575619\|34\|LS483328\|CRISPRCasFinder,CRT	575619-575652	34	MK448862	Streptococcus phage Javan178, complete genome	11710-11743	0	1.0
LS483328_1	1.25\|576280\|34\|LS483328\|CRISPRCasFinder,CRT	576280-576313	34	MK448698	Streptococcus phage Javan187, complete genome	21171-21204	0	1.0
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448701	Streptococcus phage Javan197, complete genome	33182-33211	0	1.0
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448869	Streptococcus phage Javan190, complete genome	33436-33465	0	1.0
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448870	Streptococcus phage Javan192, complete genome	33436-33465	0	1.0
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	MK448862	Streptococcus phage Javan178, complete genome	10172-10201	0	1.0
LS483328_1	1.7\|575090\|35\|LS483328\|CRISPRCasFinder,CRT	575090-575124	35	MK448862	Streptococcus phage Javan178, complete genome	19176-19210	1	0.971
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448845	Streptococcus phage Javan118, complete genome	5953-5986	1	0.971
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	MK448859	Streptococcus phage Javan170, complete genome	14338-14367	1	0.967
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	MK448680	Streptococcus phage Javan139, complete genome	9901-9930	1	0.967
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	MK448688	Streptococcus phage Javan161, complete genome	14292-14321	1	0.967
LS483328_1	1.17\|575751\|35\|LS483328\|CRISPRCasFinder,CRT	575751-575785	35	MK448862	Streptococcus phage Javan178, complete genome	14807-14841	2	0.943
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	AJ842011	Bacteriophage 11b complete genome	35015-35044	3	0.9
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	NC_006356	Flavobacterium phage 11b, complete genome	35015-35044	3	0.9
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448672	Streptococcus phage Javan117, complete genome	4060-4093	4	0.882
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448673	Streptococcus phage Javan119, complete genome	7440-7473	4	0.882
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448767	Streptococcus phage Javan467, complete genome	31648-31677	4	0.867
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	NC_004586	Streptococcus pyogenes phage 315.3, complete genome	31753-31782	4	0.867
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448943	Streptococcus phage Javan450, complete genome	31648-31677	4	0.867
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448786	Streptococcus phage Javan509, complete genome	31648-31677	4	0.867
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448856	Streptococcus phage Javan158, complete genome	12103-12132	4	0.867
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448678	Streptococcus phage Javan135, complete genome	36325-36354	4	0.867
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448767	Streptococcus phage Javan467, complete genome	4329-4362	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448771	Streptococcus phage Javan481, complete genome	4329-4362	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448973	Streptococcus phage Javan522, complete genome	6234-6267	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448942	Streptococcus phage Javan448, complete genome	4329-4362	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448775	Streptococcus phage Javan489, complete genome	8349-8382	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	NC_004586	Streptococcus pyogenes phage 315.3, complete genome	4434-4467	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448681	Streptococcus phage Javan141, complete genome	4407-4440	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448794	Streptococcus phage Javan525, complete genome	6544-6577	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448964	Streptococcus phage Javan502, complete genome	4313-4346	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448943	Streptococcus phage Javan450, complete genome	4329-4362	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448972	Streptococcus phage Javan520, complete genome	4329-4362	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448786	Streptococcus phage Javan509, complete genome	4329-4362	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448774	Streptococcus phage Javan487, complete genome	4314-4347	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448778	Streptococcus phage Javan493, complete genome	6249-6282	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448963	Streptococcus phage Javan498, complete genome	919-952	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448777	Streptococcus phage Javan491, complete genome	4688-4721	5	0.853
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448765	Streptococcus phage Javan459, complete genome	6544-6577	5	0.853
LS483328_1	1.22\|576083\|33\|LS483328\|CRISPRCasFinder,CRT	576083-576115	33	MK448675	Streptococcus phage Javan129, complete genome	11012-11044	5	0.848
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448855	Streptococcus phage Javan150, complete genome	32510-32539	5	0.833
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448777	Streptococcus phage Javan491, complete genome	31605-31634	5	0.833
LS483328_3	3.2\|1475203\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475203-1475232	30	MK448676	Streptococcus phage Javan131, complete genome	41718-41747	5	0.833
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	127156-127185	5	0.833
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP044377	Klebsiella pneumoniae strain 2018S06-082 plasmid p2018S06-082-1_MCR1, complete sequence	93305-93334	5	0.833
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP044386	Klebsiella pneumoniae strain 2018C01-239 plasmid p2018C01-239-1_MCR1, complete sequence	198656-198685	5	0.833
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	11589-11618	5	0.833
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_MH733011	Klebsiella pneumoniae strain KP16103 plasmid pKP16103-MCR-1, complete sequence	98776-98805	5	0.833
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039194	Piscirickettsia salmonis strain Psal-160 plasmid unnamed4, complete sequence	11786-11815	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039091	Piscirickettsia salmonis strain Psal-111 plasmid unnamed4, complete sequence	28000-28029	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038907	Piscirickettsia salmonis strain Psal-008 plasmid unnamed3, complete sequence	28000-28029	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038925	Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence	60234-60263	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038926	Piscirickettsia salmonis strain Psal-011 plasmid unnamed3, complete sequence	31672-31701	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039096	Piscirickettsia salmonis strain Psal-114 plasmid unnamed4, complete sequence	27913-27942	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038813	Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence	60233-60262	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038814	Piscirickettsia salmonis strain Psal-001 plasmid unnamed3, complete sequence	31936-31965	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013772	Piscirickettsia salmonis strain PM23019A plasmid p4PS3, complete sequence	6796-6825	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013799	Piscirickettsia salmonis strain AY6532B plasmid p3PS9, complete sequence	25125-25154	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP012512	Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-4, complete sequence	12982-13011	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013790	Piscirickettsia salmonis strain PM58386B plasmid p4PS7, complete sequence	21773-21802	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP033943	Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence	20530-20559	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP033944	Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-7, complete sequence	15107-15136	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP033944	Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-7, complete sequence	47500-47529	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013766	Piscirickettsia salmonis strain PM21567A plasmid p4PS2, complete sequence	23326-23355	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013825	Piscirickettsia salmonis strain PM25344B plasmid p4PS14, complete sequence	13018-13047	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013805	Piscirickettsia salmonis strain PM22180B plasmid p4PS13, complete sequence	13008-13037	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013818	Piscirickettsia salmonis strain AY3800B plasmid p2PS10, complete sequence	29108-29137	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013760	Piscirickettsia salmonis strain AY6492A plasmid p3PS1, complete sequence	6926-6955	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013777	Piscirickettsia salmonis strain PM37984A plasmid p4PS4, complete sequence	13275-13304	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013780	Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence	114178-114207	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013977	Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-2, complete sequence	1201-1230	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038915	Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence	60234-60263	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038916	Piscirickettsia salmonis strain Psal-010a plasmid unnamed3, complete sequence	32283-32312	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038970	Piscirickettsia salmonis strain Psal-068 plasmid unnamed3, complete sequence	31914-31943	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013794	Piscirickettsia salmonis strain AY6297B plasmid p3PS8, complete sequence	29109-29138	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP011851	Piscirickettsia salmonis LF-89 = ATCC VR-1361 plasmid pPSLF89-2, complete sequence	29440-29469	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039208	Piscirickettsia salmonis strain Psal-182 plasmid unnamed4, complete sequence	17395-17424	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039074	Piscirickettsia salmonis strain Psal-108 plasmid unnamed4, complete sequence	27838-27867	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039106	Piscirickettsia salmonis strain Psal-118 plasmid unnamed4, complete sequence	27971-28000	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039185	Piscirickettsia salmonis strain Psal-158 plasmid unnamed4, complete sequence	11786-11815	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039054	Piscirickettsia salmonis strain Psal-081 plasmid unnamed4, complete sequence	27942-27971	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013947	Piscirickettsia salmonis strain PSCGR01 plasmid pPsCRG01-2, complete sequence	24609-24638	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038934	Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence	60522-60551	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038935	Piscirickettsia salmonis strain Psal-025 plasmid unnamed3, complete sequence	35569-35598	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038974	Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence	73658-73687	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039049	Piscirickettsia salmonis strain Psal-073 plasmid unnamed3, complete sequence	19666-19695	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP012415	Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-2, complete sequence	20110-20139	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039069	Piscirickettsia salmonis strain Psal-107 plasmid unnamed4, complete sequence	11786-11815	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038888	Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence	60235-60264	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038889	Piscirickettsia salmonis strain Psal-004 plasmid unnamed3, complete sequence	32284-32313	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039216	Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence	74871-74900	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP039217	Piscirickettsia salmonis strain Psal-104a plasmid unnamed3, complete sequence	30468-30497	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038922	Piscirickettsia salmonis strain Psal-010b plasmid unnamed4, complete sequence	27942-27971	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038903	Piscirickettsia salmonis strain Psal-006b plasmid unnamed5, complete sequence	27712-27741	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038940	Piscirickettsia salmonis strain Psal-026 plasmid unnamed3, complete sequence	33518-33547	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038878	Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence	60234-60263	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038879	Piscirickettsia salmonis strain Psal-002 plasmid unnamed3, complete sequence	29237-29266	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP038884	Piscirickettsia salmonis strain Psal-003 plasmid unnamed3, complete sequence	32282-32311	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013810	Piscirickettsia salmonis strain PM31429B plasmid p4PS12, complete sequence	21777-21806	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP048061	Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p5, complete sequence	29899-29928	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP013785	Piscirickettsia salmonis strain PM49811B plasmid p4PS6, complete sequence	21764-21793	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP048055	Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p3, complete sequence	16955-16984	6	0.8
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP048055	Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p3, complete sequence	50507-50536	6	0.8
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	558858-558887	6	0.8
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	NZ_CP045419	Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence	564888-564917	6	0.8
LS483328_1	1.8\|575157\|34\|LS483328\|CRISPRCasFinder,CRT	575157-575190	34	MK448862	Streptococcus phage Javan178, complete genome	4794-4827	7	0.794
LS483328_1	1.10\|575290\|33\|LS483328\|CRISPRCasFinder,CRT	575290-575322	33	NZ_CP032092	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence	219504-219536	7	0.788
LS483328_1	1.22\|576083\|33\|LS483328\|CRISPRCasFinder,CRT	576083-576115	33	MK448704	Streptococcus phage Javan213, complete genome	8389-8421	7	0.788
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	AP013666	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C10-MedDCM-OCT-S37-C126, * SEQUENCING IN PROGRESS *	11581-11610	7	0.767
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	AP013407	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C10-MedDCM-OCT-S30-C55	27996-28025	7	0.767
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	AP013412	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C10A-MedDCM-OCT-S46-C61	6052-6081	7	0.767
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	261933-261962	7	0.767
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	44040-44069	7	0.767
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	MN694310	Marine virus AFVG_250M603, complete genome	22451-22480	7	0.767
LS483328_1	1.4\|574892\|34\|LS483328\|CRISPRCasFinder,CRT	574892-574925	34	MH517022	Acinetobacter phage SH-Ab 15599, complete genome	6787-6820	8	0.765
LS483328_1	1.42\|575619\|48\|LS483328\|PILER-CR	575619-575666	48	MK448862	Streptococcus phage Javan178, complete genome	11710-11757	8	0.833
LS483328_1	1.52\|576280\|48\|LS483328\|PILER-CR	576280-576327	48	MK448698	Streptococcus phage Javan187, complete genome	21171-21218	8	0.833
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP018682	Vibrio harveyi isolate QT520 plasmid p1, complete sequence	51742-51771	8	0.733
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	MG592614	Vibrio phage 1.248.O._10N.261.54.F1, partial genome	45051-45080	8	0.733
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	MG592622	Vibrio phage 1.256.O._10N.286.45.F8, partial genome	44617-44646	8	0.733
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	NZ_CP009356	Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence	152692-152721	8	0.733
LS483328_3	3.4\|1475335\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475335-1475364	30	MN693602	Marine virus AFVG_25M332, complete genome	25696-25725	8	0.733
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	857663-857696	9	0.735
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	NZ_CP013162	Lactobacillus plantarum strain MF1298 plasmid pMF1298-11, complete sequence	1380-1413	9	0.735
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	KY065484	Streptococcus phage IPP44, complete genome	26738-26771	9	0.735
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK448826	Streptococcus phage Javan645, complete genome	7628-7661	9	0.735
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK449001	Streptococcus phage Javan640, complete genome	7628-7661	9	0.735
LS483328_1	1.34\|575090\|49\|LS483328\|PILER-CR	575090-575138	49	MK448862	Streptococcus phage Javan178, complete genome	19162-19210	9	0.816
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	105155-105184	9	0.7
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	115573-115602	9	0.7
LS483328_3	3.3\|1475269\|30\|LS483328\|CRISPRCasFinder,CRT,PILER-CR	1475269-1475298	30	NC_021907	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence	119947-119976	9	0.7
LS483328_1	1.4\|574892\|34\|LS483328\|CRISPRCasFinder,CRT	574892-574925	34	NZ_CP009067	Borreliella afzelii K78 plasmid lp38, complete sequence	4707-4740	10	0.706
LS483328_1	1.4\|574892\|34\|LS483328\|CRISPRCasFinder,CRT	574892-574925	34	NZ_CP015808	Borrelia mayonii strain MN14-1539 plasmid lp36	12901-12934	10	0.706
LS483328_1	1.4\|574892\|34\|LS483328\|CRISPRCasFinder,CRT	574892-574925	34	NZ_CP015793	Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence	12901-12934	10	0.706
LS483328_1	1.4\|574892\|34\|LS483328\|CRISPRCasFinder,CRT	574892-574925	34	NC_017237	Borreliella afzelii PKo plasmid lp38, complete sequence	3412-3445	10	0.706
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	NC_015864	Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence	15103-15136	10	0.706
LS483328_1	1.4\|574892\|34\|LS483328\|CRISPRCasFinder,CRT	574892-574925	34	NC_015918	Borreliella bissettii DN127 plasmid lp28-7, complete sequence	16200-16233	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250021	Prevotella phage Lak-B2, complete genome	40213-40246	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250024	Prevotella phage Lak-B5, complete genome	39296-39329	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250028	Prevotella phage Lak-B9, complete genome	40224-40257	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250023	Prevotella phage Lak-B4, complete genome	40245-40278	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250025	Prevotella phage Lak-B6, complete genome	39280-39313	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250022	Prevotella phage Lak-B3, complete genome	39295-39328	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250027	Prevotella phage Lak-B8, complete genome	40245-40278	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250026	Prevotella phage Lak-B7, complete genome	40245-40278	11	0.676
LS483328_1	1.12\|575421\|34\|LS483328\|CRISPRCasFinder,CRT	575421-575454	34	MK250020	Prevotella phage Lak-B1, complete genome	40204-40237	11	0.676
LS483328_1	1.33\|575023\|49\|LS483328\|PILER-CR	575023-575071	49	MK448862	Streptococcus phage Javan178, complete genome	35946-35994	12	0.755

1. spacer 1.6|575023|35|LS483328|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 0, identity: 1.0

gaaatttttggcacaagatcctctctataaacatc	CRISPR spacer
gaaatttttggcacaagatcctctctataaacatc	Protospacer
***********************************

2. spacer 1.15|575619|34|LS483328|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 0, identity: 1.0

tgcgttgtcaaaagtgttaagaggagaggtaaca	CRISPR spacer
tgcgttgtcaaaagtgttaagaggagaggtaaca	Protospacer
**********************************

3. spacer 1.25|576280|34|LS483328|CRISPRCasFinder,CRT matches to MK448698 (Streptococcus phage Javan187, complete genome) position: , mismatch: 0, identity: 1.0

agaaatgaatgctaaggtaaactcactaaataag	CRISPR spacer
agaaatgaatgctaaggtaaactcactaaataag	Protospacer
**********************************

4. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448701 (Streptococcus phage Javan197, complete genome) position: , mismatch: 0, identity: 1.0

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcgtggatgggcttaaaagagggccacg	Protospacer
******************************

5. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448869 (Streptococcus phage Javan190, complete genome) position: , mismatch: 0, identity: 1.0

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcgtggatgggcttaaaagagggccacg	Protospacer
******************************

6. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448870 (Streptococcus phage Javan192, complete genome) position: , mismatch: 0, identity: 1.0

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcgtggatgggcttaaaagagggccacg	Protospacer
******************************

7. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 0, identity: 1.0

tgataagcattttgatttagctattgttga	CRISPR spacer
tgataagcattttgatttagctattgttga	Protospacer
******************************

8. spacer 1.7|575090|35|LS483328|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.971

caagttagtagtcgcttggtcgacattctcatttg	CRISPR spacer
caagttagtagtctcttggtcgacattctcatttg	Protospacer
************* *********************

9. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 1, identity: 0.971

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
gcgaagataatatgccaattgaagttgttaatct	Protospacer
*********************************

10. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 1, identity: 0.967

tgataagcattttgatttagctattgttga	CRISPR spacer
cgataagcattttgatttagctattgttga	Protospacer
.*****************************

11. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448680 (Streptococcus phage Javan139, complete genome) position: , mismatch: 1, identity: 0.967

tgataagcattttgatttagctattgttga	CRISPR spacer
cgataagcattttgatttagctattgttga	Protospacer
.*****************************

12. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 1, identity: 0.967

tgataagcattttgatttagctattgttga	CRISPR spacer
cgataagcattttgatttagctattgttga	Protospacer
.*****************************

13. spacer 1.17|575751|35|LS483328|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 2, identity: 0.943

ccgtcaaagatgtgcatcagacctgtaccgtcacc	CRISPR spacer
ccgtcaaagatgtgcatcagccctgtaccgtctcc	Protospacer
******************** *********** **

14. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to AJ842011 (Bacteriophage 11b complete genome) position: , mismatch: 3, identity: 0.9

tgataagcattttgatttagctattgttga	CRISPR spacer
agataactattttgatttagctattgttga	Protospacer
 ***** .**********************

15. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NC_006356 (Flavobacterium phage 11b, complete genome) position: , mismatch: 3, identity: 0.9

tgataagcattttgatttagctattgttga	CRISPR spacer
agataactattttgatttagctattgttga	Protospacer
 ***** .**********************

16. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 4, identity: 0.882

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
gcgaagataacatgccaattgaagttgtcaacct	Protospacer
**********.*****************.**.*

17. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 4, identity: 0.882

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
gcgaagataacatgccaattgaagttgtcaacct	Protospacer
**********.*****************.**.*

18. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448767 (Streptococcus phage Javan467, complete genome) position: , mismatch: 4, identity: 0.867

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcatggatgggcttaaaagagggtcgtg	Protospacer
****.********************.*..*

19. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NC_004586 (Streptococcus pyogenes phage 315.3, complete genome) position: , mismatch: 4, identity: 0.867

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcatggatgggcttaaaagagggtcgtg	Protospacer
****.********************.*..*

20. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448943 (Streptococcus phage Javan450, complete genome) position: , mismatch: 4, identity: 0.867

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcatggatgggcttaaaagagggtcgtg	Protospacer
****.********************.*..*

21. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448786 (Streptococcus phage Javan509, complete genome) position: , mismatch: 4, identity: 0.867

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcatggatgggcttaaaagagggtcgtg	Protospacer
****.********************.*..*

22. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448856 (Streptococcus phage Javan158, complete genome) position: , mismatch: 4, identity: 0.867

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcttggatgggcttaaaagagggacgtg	Protospacer
**** ******************** *..*

23. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448678 (Streptococcus phage Javan135, complete genome) position: , mismatch: 4, identity: 0.867

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
ttgcgtggatgggcttaaaagagggacgtg	Protospacer
* *********************** *..*

24. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448767 (Streptococcus phage Javan467, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

25. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

26. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

27. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

28. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

29. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to NC_004586 (Streptococcus pyogenes phage 315.3, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

30. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

31. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

32. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

33. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448943 (Streptococcus phage Javan450, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

34. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

35. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448786 (Streptococcus phage Javan509, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

36. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

37. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

38. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

39. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

40. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 5, identity: 0.853

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
acgaagataacatgccaattgaagttgtcaacct	Protospacer
.*********.*****************.**.*

41. spacer 1.22|576083|33|LS483328|CRISPRCasFinder,CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 5, identity: 0.848

ttggtgaggttgagtttaaaggtaagattgact	CRISPR spacer
tcggtagtgttgagtttaaaggaaagattgact	Protospacer
*.***.. ************** **********

42. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448855 (Streptococcus phage Javan150, complete genome) position: , mismatch: 5, identity: 0.833

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcgtggatgggccttaaagaggggcgtg	Protospacer
**************.* ******** *..*

43. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 5, identity: 0.833

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcttggatgggtttaaaagagggtcgtg	Protospacer
**** ********.***********.*..*

44. spacer 3.2|1475203|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 5, identity: 0.833

tagcgtggatgggcttaaaagagggccacg	CRISPR spacer
tagcgtggatgggccttaaagaggggcgtg	Protospacer
**************.* ******** *..*

45. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 5, identity: 0.833

-agatagcttgagcgatttcatcgttgagct	CRISPR spacer
caaacag-ttgtgggatttcatcgttgagct	Protospacer
 *.*.** *** * *****************

46. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044377 (Klebsiella pneumoniae strain 2018S06-082 plasmid p2018S06-082-1_MCR1, complete sequence) position: , mismatch: 5, identity: 0.833

-agatagcttgagcgatttcatcgttgagct	CRISPR spacer
caaacag-ttgtgggatttcatcgttgagct	Protospacer
 *.*.** *** * *****************

47. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044386 (Klebsiella pneumoniae strain 2018C01-239 plasmid p2018C01-239-1_MCR1, complete sequence) position: , mismatch: 5, identity: 0.833

-agatagcttgagcgatttcatcgttgagct	CRISPR spacer
caaacag-ttgtgggatttcatcgttgagct	Protospacer
 *.*.** *** * *****************

48. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 5, identity: 0.833

-agatagcttgagcgatttcatcgttgagct	CRISPR spacer
caaacag-ttgtgggatttcatcgttgagct	Protospacer
 *.*.** *** * *****************

49. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH733011 (Klebsiella pneumoniae strain KP16103 plasmid pKP16103-MCR-1, complete sequence) position: , mismatch: 5, identity: 0.833

-agatagcttgagcgatttcatcgttgagct	CRISPR spacer
caaacag-ttgtgggatttcatcgttgagct	Protospacer
 *.*.** *** * *****************

50. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039194 (Piscirickettsia salmonis strain Psal-160 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

51. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039091 (Piscirickettsia salmonis strain Psal-111 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

52. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038907 (Piscirickettsia salmonis strain Psal-008 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

53. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038925 (Piscirickettsia salmonis strain Psal-011 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

54. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038926 (Piscirickettsia salmonis strain Psal-011 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

55. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039096 (Piscirickettsia salmonis strain Psal-114 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

56. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038813 (Piscirickettsia salmonis strain Psal-001 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

57. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038814 (Piscirickettsia salmonis strain Psal-001 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

58. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013772 (Piscirickettsia salmonis strain PM23019A plasmid p4PS3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

59. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013799 (Piscirickettsia salmonis strain AY6532B plasmid p3PS9, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

60. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012512 (Piscirickettsia salmonis strain PM32597B1 plasmid pPSB1-4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

61. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013790 (Piscirickettsia salmonis strain PM58386B plasmid p4PS7, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

62. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033943 (Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-6, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

63. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033944 (Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-7, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

64. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033944 (Piscirickettsia salmonis strain EM-90 plasmid pPSEM90-7, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

65. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013766 (Piscirickettsia salmonis strain PM21567A plasmid p4PS2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

66. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013825 (Piscirickettsia salmonis strain PM25344B plasmid p4PS14, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

67. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013805 (Piscirickettsia salmonis strain PM22180B plasmid p4PS13, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

68. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013818 (Piscirickettsia salmonis strain AY3800B plasmid p2PS10, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

69. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013760 (Piscirickettsia salmonis strain AY6492A plasmid p3PS1, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

70. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013777 (Piscirickettsia salmonis strain PM37984A plasmid p4PS4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

71. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013780 (Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

72. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013977 (Piscirickettsia salmonis strain CGR02 plasmid pPSCRG02-2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

73. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038915 (Piscirickettsia salmonis strain Psal-010a plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

74. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038916 (Piscirickettsia salmonis strain Psal-010a plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

75. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038970 (Piscirickettsia salmonis strain Psal-068 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

76. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013794 (Piscirickettsia salmonis strain AY6297B plasmid p3PS8, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

77. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011851 (Piscirickettsia salmonis LF-89 = ATCC VR-1361 plasmid pPSLF89-2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

78. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039208 (Piscirickettsia salmonis strain Psal-182 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

79. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039074 (Piscirickettsia salmonis strain Psal-108 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

80. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039106 (Piscirickettsia salmonis strain Psal-118 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

81. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039185 (Piscirickettsia salmonis strain Psal-158 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

82. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039054 (Piscirickettsia salmonis strain Psal-081 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

83. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013947 (Piscirickettsia salmonis strain PSCGR01 plasmid pPsCRG01-2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

84. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038934 (Piscirickettsia salmonis strain Psal-025 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

85. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038935 (Piscirickettsia salmonis strain Psal-025 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

86. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038974 (Piscirickettsia salmonis strain Psal-069 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

87. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039049 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

88. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012415 (Piscirickettsia salmonis strain PM15972A1 plasmid pPSA1-2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

89. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039069 (Piscirickettsia salmonis strain Psal-107 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

90. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038888 (Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

91. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038889 (Piscirickettsia salmonis strain Psal-004 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

92. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039216 (Piscirickettsia salmonis strain Psal-104a plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

93. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039217 (Piscirickettsia salmonis strain Psal-104a plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

94. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038922 (Piscirickettsia salmonis strain Psal-010b plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

95. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038903 (Piscirickettsia salmonis strain Psal-006b plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

96. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038940 (Piscirickettsia salmonis strain Psal-026 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

97. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038878 (Piscirickettsia salmonis strain Psal-002 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

98. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038879 (Piscirickettsia salmonis strain Psal-002 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

99. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038884 (Piscirickettsia salmonis strain Psal-003 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

100. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013810 (Piscirickettsia salmonis strain PM31429B plasmid p4PS12, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

101. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048061 (Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p5, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

102. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013785 (Piscirickettsia salmonis strain PM49811B plasmid p4PS6, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

103. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048055 (Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

104. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048055 (Piscirickettsia salmonis strain Ps-11091B plasmid Ps11091B-p3, complete sequence) position: , mismatch: 6, identity: 0.8

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
aattcgtttgagcgatttcatgcttgagct	Protospacer
*. * *.**************  *******

105. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.8

tgataagcattttgatttagctattgttga	CRISPR spacer
tgataaacattttgatttagcttattttat	Protospacer
******.***************  * **.

106. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 6, identity: 0.8

tgataagcattttgatttagctattgttga	CRISPR spacer
ggctgagcattttgaattagccattgttta	Protospacer
 * *.********** *****.****** *

107. spacer 1.8|575157|34|LS483328|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 7, identity: 0.794

gcgaagataatatgccaattgaagttgttaatcg	CRISPR spacer
accaggataatatgccgattgatgttgttaacct	Protospacer
.* *.***********.***** ********.*

108. spacer 1.10|575290|33|LS483328|CRISPRCasFinder,CRT matches to NZ_CP032092 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

agctacataacggttaacagcagccatagcaca	CRISPR spacer
acttaaataacggttatcagcagccatataaga	Protospacer
* .** ********** ***********  * *

109. spacer 1.22|576083|33|LS483328|CRISPRCasFinder,CRT matches to MK448704 (Streptococcus phage Javan213, complete genome) position: , mismatch: 7, identity: 0.788

ttggtgaggttgagtttaaaggtaagattgact	CRISPR spacer
tcgcaggcgttgagttcaaaggcaagattgact	Protospacer
*.*  *. ********.*****.**********

110. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to AP013666 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C10-MedDCM-OCT-S37-C126, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

tgataagcattttgatttagctattgttga	CRISPR spacer
acaaagtaattttgatttagctattggtga	Protospacer
  * *.  ****************** ***

111. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to AP013407 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C10-MedDCM-OCT-S30-C55) position: , mismatch: 7, identity: 0.767

tgataagcattttgatttagctattgttga	CRISPR spacer
acaaagtaattttgatttagctattggtga	Protospacer
  * *.  ****************** ***

112. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to AP013412 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C10A-MedDCM-OCT-S46-C61) position: , mismatch: 7, identity: 0.767

tgataagcattttgatttagctattgttga	CRISPR spacer
acaaagtaattttgatttagctattggtga	Protospacer
  * *.  ****************** ***

113. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.767

tgata-agcattttgatttagctattgttga	CRISPR spacer
-gttgcatcattttgatttaactattgtttc	Protospacer
 * *. * ************.********

114. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 7, identity: 0.767

tgataagcattttgatttagctattgttga	CRISPR spacer
tgataatcattttgttttagctaggactaa	Protospacer
****** ******* ********  ..*.*

115. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MN694310 (Marine virus AFVG_250M603, complete genome) position: , mismatch: 7, identity: 0.767

tgataagcattttgatttagctattgttga	CRISPR spacer
aaaacatcattttgatttagctactggtga	Protospacer
 .*  * ****************.** ***

116. spacer 1.4|574892|34|LS483328|CRISPRCasFinder,CRT matches to MH517022 (Acinetobacter phage SH-Ab 15599, complete genome) position: , mismatch: 8, identity: 0.765

ctgttgaattgcgatttaaagcagaatttattga	CRISPR spacer
tttcagaattgcgatataaagcagaattgataaa	Protospacer
.* . ********** ************ ** .*

117. spacer 1.42|575619|48|LS483328|PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 8, identity: 0.833

tgcgttgtcaaaagtgttaagaggagaggtaacagtctcgccccatac	CRISPR spacer
tgcgttgtcaaaagtgttaagaggagaggtaacagaatgaaatcatat	Protospacer
***********************************  * .  .****.

118. spacer 1.52|576280|48|LS483328|PILER-CR matches to MK448698 (Streptococcus phage Javan187, complete genome) position: , mismatch: 8, identity: 0.833

agaaatgaatgctaaggtaaactcactaaataagg-tctcgcctttcat	CRISPR spacer
agaaatgaatgctaaggtaaactcactaaataaggaattcagactaca-	Protospacer
***********************************  .**.  .* **

119. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018682 (Vibrio harveyi isolate QT520 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
ggatagcttgagcggtttcatcctttgcaa	Protospacer
.*************.******* ** .

120. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MG592614 (Vibrio phage 1.248.O._10N.261.54.F1, partial genome) position: , mismatch: 8, identity: 0.733

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
tgatagcttgagcgagttgatcgttagcta	Protospacer
 ************** ** ******.. .

121. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MG592622 (Vibrio phage 1.256.O._10N.286.45.F8, partial genome) position: , mismatch: 8, identity: 0.733

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
tgatagcttgagcgagttgatcgttagcta	Protospacer
 ************** ** ******.. .

122. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009356 (Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence) position: , mismatch: 8, identity: 0.733

tgataagcattttgatttagctattgttga	CRISPR spacer
tagcttccattatgatttagatattgttga	Protospacer
*...   **** ******** *********

123. spacer 3.4|1475335|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to MN693602 (Marine virus AFVG_25M332, complete genome) position: , mismatch: 8, identity: 0.733

tgataagcattttgatttagctattgttga	CRISPR spacer
cgataagaattttgagttagctatgggact	Protospacer
.****** ******* ******** *

124. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.735

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
ggatgaaaaaaattaaagttttgattatcgatga	Protospacer
.* ********** **.************.  ..

125. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to NZ_CP013162 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-11, complete sequence) position: , mismatch: 9, identity: 0.735

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
cgctgataaagataaaggttttgatttgactttg	Protospacer
 ***** ***.***************    *  *

126. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to KY065484 (Streptococcus phage IPP44, complete genome) position: , mismatch: 9, identity: 0.735

agctgaaaaaaataaaggttttgat----tatcataag	CRISPR spacer
cgctgaaaaatataaaggtgttgatgtcctattt----	Protospacer
 ********* ******** *****    ***.

127. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK448826 (Streptococcus phage Javan645, complete genome) position: , mismatch: 9, identity: 0.735

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
agctgaagaaaataatggttttgaaatcaatatt	Protospacer
*******.******* ********   . ***

128. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK449001 (Streptococcus phage Javan640, complete genome) position: , mismatch: 9, identity: 0.735

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
agctgaagaaaataatggttttgaaatcaatatt	Protospacer
*******.******* ********   . ***

129. spacer 1.34|575090|49|LS483328|PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 9, identity: 0.816

caagttagtagtcgcttggtcgacattctcatttggt-ctcgccccatac	CRISPR spacer
caagttagtagtctcttggtcgacattctcatttgccacattctccatg-	Protospacer
************* ********************* . * . *.****.

130. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NC_007764 (Rhizobium etli CFN 42 plasmid p42c, complete sequence) position: , mismatch: 9, identity: 0.7

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
ctatggcttgtgcgatttcatcgttcccaa	Protospacer
  **.***** **************

131. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 9, identity: 0.7

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
ctatggcttgtgcgatttcatcgttcccaa	Protospacer
  **.***** **************

132. spacer 3.3|1475269|30|LS483328|CRISPRCasFinder,CRT,PILER-CR matches to NC_021907 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence) position: , mismatch: 9, identity: 0.7

agatagcttgagcgatttcatcgttgagct	CRISPR spacer
ctatggcttgtgcgatttcatcgttcccaa	Protospacer
  **.***** **************

133. spacer 1.4|574892|34|LS483328|CRISPRCasFinder,CRT matches to NZ_CP009067 (Borreliella afzelii K78 plasmid lp38, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttgaattgcgatttaaagcagaatttattga	CRISPR spacer
caaccttattgcgctttaatgcagaatttatttt	Protospacer
* ...  ****** ***** ************

134. spacer 1.4|574892|34|LS483328|CRISPRCasFinder,CRT matches to NZ_CP015808 (Borrelia mayonii strain MN14-1539 plasmid lp36) position: , mismatch: 10, identity: 0.706

ctgttgaattgcgatttaaagcagaatttattga	CRISPR spacer
caaccttattgcgctttaatgcagaatttatttt	Protospacer
* ...  ****** ***** ************

135. spacer 1.4|574892|34|LS483328|CRISPRCasFinder,CRT matches to NZ_CP015793 (Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttgaattgcgatttaaagcagaatttattga	CRISPR spacer
caaccttattgcgctttaatgcagaatttatttt	Protospacer
* ...  ****** ***** ************

136. spacer 1.4|574892|34|LS483328|CRISPRCasFinder,CRT matches to NC_017237 (Borreliella afzelii PKo plasmid lp38, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttgaattgcgatttaaagcagaatttattga	CRISPR spacer
caaccttattgcgctttaatgcagaatttatttt	Protospacer
* ...  ****** ***** ************

137. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 10, identity: 0.706

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tgtcgaaaaaaataaaagtttagattatgtagat	Protospacer
 *..************.**** ******   .*

138. spacer 1.4|574892|34|LS483328|CRISPRCasFinder,CRT matches to NC_015918 (Borreliella bissettii DN127 plasmid lp28-7, complete sequence) position: , mismatch: 11, identity: 0.676

ctgttgaattgcgatttaaagcagaatttattga	CRISPR spacer
caaccttgttgcgctttaatgcagaatttatttt	Protospacer
* ...  .***** ***** ************

139. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

140. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

141. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

142. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

143. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

144. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

145. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

146. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

147. spacer 1.12|575421|34|LS483328|CRISPRCasFinder,CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 11, identity: 0.676

agctgaaaaaaataaaggttttgattatcataag	CRISPR spacer
tacggaaaacaataaaggttttgataatgcagta	Protospacer
 .* ***** *************** **   . .

148. spacer 1.33|575023|49|LS483328|PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 12, identity: 0.755

gaaatttttggcacaagatcctctctataaacatcgtctcgccccatac	CRISPR spacer
gaaatttttggcacaagatcctctctataaacatctgtctctatgacat	Protospacer
***********************************  ... . . *.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31784 : 42003

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF04603.1\|31784_35591_+	phosphoribosylformylglycinamidine synthase protein	A6N228	Microbacterium_phage	9.8e-38	27.4
SQF04604.1\|35687_37145_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.0e-56	34.0
SQF04605.1\|37201_38224_+	phosphoribosylaminoimidazole synthetase	A0A0E3FGG1	Synechococcus_phage	5.1e-58	41.1
SQF04606.1\|38220_38778_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.9e-24	37.0
SQF04607.1\|38924_40472_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	7.2e-72	47.3
SQF04608.1\|40848_42003_-	amidase	A0A2H4IZY5	uncultured_Caudovirales_phage	7.9e-07	29.6

DBSCAN-SWA_2

309457 : 319106

Temperate_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF04850.1\|309457_310630_-	membrane protein	A0A2H4PQX1	Staphylococcus_phage	1.6e-15	50.6
SQF04851.1\|310755_311286_+	DNA-binding protein	NA	NA	NA	NA
SQF04852.1\|311330_311918_+	DNA polymerase III subunit epsilon	A0A0A8WJ41	Clostridium_phage	8.3e-13	30.1
SQF04853.1\|312021_312744_+	MerR family transcriptional regulator	NA	NA	NA	NA
SQF04854.1\|312785_313085_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQF04855.1\|313522_314263_-	Exotoxin type C precursor	Q938J1	Temperate_phage	5.2e-28	34.8
SQF04856.1\|314496_315291_+	exotoxin M precursor	Q938J1	Temperate_phage	3.0e-42	37.8
SQF04857.1\|315433_315622_+	YcfA-like protein	A0A1P8VVU8	Streptococcus_phage	2.6e-13	59.6
SQF04858.1\|315675_316080_+	toxin-antitoxin system, antitoxin component, HicB family	A0A1P8VVW2	Streptococcus_phage	1.8e-62	91.0
SQF04859.1\|316427_316568_+	Uncharacterised protein	NA	NA	NA	NA
SQF04860.1\|316636_317233_+	exported protein	NA	NA	NA	NA
SQF04861.1\|317371_318058_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.6e-34	38.7
SQF04862.1\|318059_319106_+	histidine kinase protein	Q8QKV7	Ectocarpus_siliculosus_virus	4.6e-06	26.0

DBSCAN-SWA_3

963911 : 1004293

Streptococcus_phage(70.83%)

tail,holin,terminase,integrase

attL 963676:963690|attR 994642:994656

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
963676:963690	attL	NA	NA	NA	NA
SQF05425.1\|963911_965000_-\|integrase	integrase	Q38159	Streptococcus_phage	1.1e-188	90.9
SQF05426.1\|965125_966253_-	Abortive infection bacteriophage resistance protein	X2L062	Streptococcus_phage	4.3e-58	41.9
SQF05427.1\|966400_967189_-	phage transcriptional repressor	A0A097PBE5	Streptococcus_pyogenes_phage	7.6e-86	64.6
SQF05428.1\|967371_967506_+	Uncharacterised protein	X2KTZ3	Streptococcus_phage	7.6e-07	76.9
SQF05429.1\|967463_968147_-	phage protein	A0A1X9I5M7	Streptococcus_phage	9.2e-72	59.4
SQF05430.1\|968203_968395_+	prophage LambdaSa1, Cro/CI family transcriptional regulator	NA	NA	NA	NA
SQF05431.1\|968462_969188_+	phage antirepressor family protein	A0A141E1D3	Streptococcus_phage	3.8e-92	71.5
SQF05432.1\|969200_969332_+	Uncharacterised protein	NA	NA	NA	NA
SQF05433.1\|969328_969511_-	phage membrane protein	NA	NA	NA	NA
SQF05434.1\|969617_969908_+	phage protein	J7KBR0	Streptococcus_phage	3.0e-40	85.3
SQF05435.1\|970053_970866_+	primosome component and related proteins	A0A286QMT3	Streptococcus_phage	8.9e-74	59.1
SQF05436.1\|970852_971635_+	phage replication protein	A0A097PAQ0	Streptococcus_pyogenes_phage	5.9e-131	88.1
SQF05437.1\|971625_971763_+	phage protein	J7KBQ4	Streptococcus_phage	1.1e-05	73.0
SQF05438.1\|971732_971984_+	phage protein	NA	NA	NA	NA
SQF05439.1\|972047_972437_+	phage protein	Q4Z921	Staphylococcus_phage	3.8e-06	30.1
SQF05440.1\|972478_972778_+	Uncharacterised protein	NA	NA	NA	NA
SQF05441.1\|972774_972975_+	Uncharacterised protein	NA	NA	NA	NA
SQF05442.1\|972967_973195_+	phage membrane protein	A3F628	Streptococcus_phage	1.1e-08	56.7
SQF05443.1\|973198_973684_+	DNA N-4 cytosine methyltransferase M.NgoMXV	A0A097PAU8	Streptococcus_pyogenes_phage	4.3e-92	96.9
SQF05444.1\|973686_974439_+	phage protein	U4KJA1	Streptococcus_phage	9.4e-110	77.0
SQF05445.1\|974435_974654_+	Uncharacterised protein	NA	NA	NA	NA
SQF05446.1\|974764_975085_+	phage encoded transcriptional regulator, ArpU family	Q938L8	Temperate_phage	5.5e-27	57.5
SQF05447.1\|975222_975789_+	gp32	Q7Y4J2	Streptococcus_phage	7.4e-67	68.1
SQF05448.1\|975952_976291_+	HNH endonuclease domain protein	E8ZDL6	Streptococcus_phage	2.0e-51	82.7
SQF05449.1\|976427_977690_+	gp34	A0A126GGJ2	Streptococcus_phage	4.8e-183	75.6
SQF05450.1\|977682_979080_+	gp35	A0A141E170	Streptococcus_phage	1.8e-146	55.9
SQF05451.1\|979069_979363_+	Uncharacterised protein	A0A141E169	Streptococcus_phage	1.1e-13	52.3
SQF05452.1\|979416_979641_+	phage protein	A0A097PAR8	Streptococcus_pyogenes_phage	5.9e-20	62.5
SQF05453.1\|979642_979900_+	phage protein	A0A1X9I676	Streptococcus_phage	4.0e-28	79.2
SQF05454.1\|979992_981408_+\|terminase	phage terminase large subunit	M1PFG2	Streptococcus_phage	1.5e-254	88.9
SQF05455.1\|981482_981938_+	gp39	A0A126GGH5	Streptococcus_phage	7.5e-38	57.8
SQF05456.1\|981941_982832_+	phage structural protein	A0A126GGI3	Streptococcus_phage	3.5e-132	78.7
SQF05457.1\|982834_983047_+	phage protein	M1PRX2	Streptococcus_phage	3.2e-15	63.1
SQF05458.1\|983097_983496_+	gp42	M1Q0V8	Streptococcus_phage	6.6e-46	76.7
SQF05459.1\|983482_983821_+	phage protein	M1PFF8	Streptococcus_phage	3.7e-42	72.1
SQF05460.1\|983813_984050_+	phage protein	A0A1P8BMT2	Lactococcus_phage	2.8e-20	66.7
SQF05461.1\|984050_984386_+	phage protein	A0A1P8BMR5	Lactococcus_phage	1.2e-35	66.7
SQF05462.1\|984402_984984_+\|tail	major tail protein	Q9F4J6	Streptococcus_phage	1.7e-58	63.4
SQF05463.1\|984994_985258_+	phage protein	A0A0B5A2F3	Streptococcus_phage	3.2e-17	52.3
SQF05464.1\|985272_985644_+	phage protein	M1PS20	Streptococcus_phage	6.0e-33	59.2
SQF05465.1\|985643_988004_+	phage protein	M1NRG5	Streptococcus_phage	1.4e-156	49.7
SQF05466.1\|988000_988696_+	phage protein	M1Q167	Streptococcus_phage	2.4e-43	40.4
SQF05467.1\|988692_990639_+	phage endopeptidase	A7J2A7	Streptococcus_phage	6.6e-107	55.8
SQF05468.1\|990638_991322_+	collagen-like repeat phage protein	A7J2A8	Streptococcus_phage	6.9e-27	100.0
SQF05469.1\|991323_991941_+	phage protein	NA	NA	NA	NA
SQF05470.1\|991950_993816_+	phage protein	A7J2A9	Streptococcus_phage	2.3e-80	64.9
SQF05471.1\|993829_994015_+	Uncharacterised protein	NA	NA	NA	NA
SQF05472.1\|994017_994632_+	phage protein	Q938J7	Temperate_phage	3.6e-67	77.0
SQF05473.1\|994642_995014_+\|holin	phage holin	A0A097QQ04	Enterococcus_phage	4.0e-29	53.7
994642:994656	attR	NA	NA	NA	NA
SQF05474.1\|995022_995133_+	phage membrane protein	A7J2B4	Streptococcus_phage	1.5e-05	77.8
SQF05475.1\|995129_996326_+	phage amidase protein	A7J2B5	Streptococcus_phage	9.8e-194	81.8
SQF05476.1\|996706_997282_+	phospholipase A2 SlaA	Q938J0	Temperate_phage	5.0e-111	99.0
SQF05477.1\|997275_997563_+	phage membrane protein	Q938I9	Temperate_phage	2.4e-29	100.0
SQF05478.1\|997629_997818_+	paratox	A3F673	Streptococcus_phage	7.9e-18	75.9
SQF05479.1\|998409_999021_+	membrane protein	M1Q152	Streptococcus_phage	1.6e-51	55.1
SQF05480.1\|999067_999862_-	membrane protein	NA	NA	NA	NA
SQF05481.1\|999871_1000570_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-19	28.9
SQF05482.1\|1000569_1000941_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQF05483.1\|1001182_1004293_+	DNA polymerase III alpha subunit	A0A291AVG1	Streptomyces_phage	8.6e-117	29.7

DBSCAN-SWA_4

1196326 : 1251373

Bacillus_phage(40.0%)

transposase,protease,tRNA,integrase

attL 1225430:1225444|attR 1257035:1257049

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF05677.1\|1196326_1198420_+\|protease	ATP-dependent protease ATP-binding subunit ClpL	H6X3M6	Enterobacteria_phage	7.6e-117	38.1
SQF05678.1\|1198609_1201612_-	cell surface protein, RBC-binding protein	NA	NA	NA	NA
SQF05679.1\|1201697_1201943_-	Uncharacterised protein	NA	NA	NA	NA
SQF05680.1\|1201984_1202584_-	GTP-binding protein	NA	NA	NA	NA
SQF05681.1\|1202593_1203823_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.1e-139	62.0
SQF05682.1\|1203858_1204029_-	hypothetical membrane associated protein	NA	NA	NA	NA
SQF05683.1\|1204048_1204546_-	dihydrofolate reductase	V9LZM6	Vibrio_phage	4.0e-16	29.6
SQF05684.1\|1204626_1205466_-	thymidylate synthase	U5J9N5	Bacillus_phage	5.6e-79	51.4
SQF05685.1\|1205629_1206829_+	3-hydroxy-3-methylglutaryl coenzyme A synthase	NA	NA	NA	NA
SQF05686.1\|1206812_1208099_+	3-hydroxy-3-methylglutaryl-CoA reductase	NA	NA	NA	NA
SQF05687.1\|1208383_1209427_-	isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA
SQF05688.1\|1209378_1210377_-	phosphomevalonate kinase	NA	NA	NA	NA
SQF05689.1\|1210369_1211314_-	mevalonate diphosphate decarboxylase	NA	NA	NA	NA
SQF05690.1\|1211295_1212174_-	mevalonate kinase	NA	NA	NA	NA
SQF05691.1\|1212712_1214464_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	5.3e-31	26.8
SQF05692.1\|1214465_1216187_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-40	27.9
SQF05693.1\|1216636_1218643_+	surface-anchored 5'-nucleotidase	NA	NA	NA	NA
SQF05694.1\|1218835_1219246_-	peptide deformylase	NA	NA	NA	NA
SQF05695.1\|1219377_1220727_-	glutamate dehydrogenase	NA	NA	NA	NA
SQF05696.1\|1220867_1222640_-	ABC transporter, ATP-binding/permease protein	W8CYL7	Bacillus_phage	4.7e-51	28.8
SQF05697.1\|1222639_1224385_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	3.2e-36	24.1
SQF05698.1\|1224489_1226358_-	ATPase components of ABC transporters with duplicated ATPase domains	A0A2K9L3Z8	Tupanvirus	1.1e-61	30.7
1225430:1225444	attL	NA	NA	NA	NA
SQF05699.1\|1226350_1227565_-\|tRNA	tRNA CCA-pyrophosphorylase	H7BUW3	unidentified_phage	2.2e-39	46.0
SQF05700.1\|1227665_1228514_-	DegV family protein	NA	NA	NA	NA
SQF05701.1\|1228513_1228894_-\|transposase	transposase	NA	NA	NA	NA
SQF05702.1\|1229116_1229827_-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase family protein	A0A088F6W1	Sulfitobacter_phage	2.7e-05	36.2
SQF05703.1\|1230288_1230486_-	membrane protein	NA	NA	NA	NA
SQF05704.1\|1230498_1230621_-	membrane protein	NA	NA	NA	NA
SQF05705.1\|1230624_1230822_-	transcriptional regulator	NA	NA	NA	NA
SQF05706.1\|1231261_1231465_-	transcriptional regulator	NA	NA	NA	NA
SQF05707.1\|1231467_1231884_-	Uncharacterised protein	NA	NA	NA	NA
SQF05708.1\|1232002_1233463_-	conjugation protein	NA	NA	NA	NA
SQF05709.1\|1233757_1234024_-	Protein of uncharacterised function (DUF3847)	NA	NA	NA	NA
SQF05710.1\|1234248_1234668_-	DUF1706 domain-containing protein	NA	NA	NA	NA
SQF05711.1\|1234728_1235301_-	TnpX site-specific recombinase family protein	NA	NA	NA	NA
SQF05712.1\|1235312_1235912_-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase family protein	A0A249Y0X5	Enterococcus_phage	1.2e-11	35.2
SQF05713.1\|1236494_1238441_-	fructose-specific phosphotransferase system (PTS), IIABC component	NA	NA	NA	NA
SQF05714.1\|1238437_1239349_-	1-phosphofructokinase	NA	NA	NA	NA
SQF05715.1\|1239345_1240059_-	DeoR family regulatory protein	NA	NA	NA	NA
SQF05716.1\|1240471_1241395_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQF05717.1\|1241406_1242465_-	regulatory protein	NA	NA	NA	NA
SQF05718.1\|1242596_1243589_-	pyridine nucleotide-disulfide oxidoreductase family protein	Q9JRK7	Streptococcus_phage	2.8e-29	53.3
SQF05719.1\|1243588_1244323_-\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
SQF05720.1\|1244309_1244828_-	16S rRNA-processing protein RimM	NA	NA	NA	NA
SQF05721.1\|1245231_1245747_+\|transposase	transposase	NA	NA	NA	NA
SQF05722.1\|1245770_1246574_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.3e-64	51.9
SQF05723.1\|1247043_1250526_-	InlA-like domain containing cell surfaced-anchored protein	NA	NA	NA	NA
SQF05724.1\|1250734_1251373_-\|integrase	resolvase/integrase	M9Q1K0	Clostridium_phage	4.1e-13	28.4
1257035:1257049	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1307455 : 1343844

Tupanvirus(16.67%)

transposase,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF05780.1\|1307455_1308859_+\|tRNA	tRNA modification GTPase TrmE	NA	NA	NA	NA
SQF05781.1\|1309125_1310535_-	dipeptidase PepV	NA	NA	NA	NA
SQF05782.1\|1310615_1311218_-	nitroreductase family protein	NA	NA	NA	NA
SQF05783.1\|1311344_1313129_-	excinuclease ABC subunit C	NA	NA	NA	NA
SQF05784.1\|1313378_1314416_-	extracellular solute-binding protein	NA	NA	NA	NA
SQF05785.1\|1314412_1315198_-	response regulator protein	NA	NA	NA	NA
SQF05786.1\|1315201_1316836_-	sensor histidine kinase	NA	NA	NA	NA
SQF05787.1\|1317006_1317834_-	phospotransferase system (PTS), enzyme II component D	NA	NA	NA	NA
SQF05788.1\|1317830_1318640_-	PTS system, mannose-specific IIC component	NA	NA	NA	NA
SQF05789.1\|1318657_1319149_-	sugar phosphotransferase system (PTS), mannose/fructose family, IIB component	NA	NA	NA	NA
SQF05790.1\|1319167_1319590_-	PTS system mannose/fructose family IIA component	NA	NA	NA	NA
SQF05791.1\|1320099_1321119_-	membrane protein	NA	NA	NA	NA
SQF05792.1\|1321406_1321844_-	methionine sulfoxide reductase B	NA	NA	NA	NA
SQF05793.1\|1322093_1322306_+	Uncharacterised protein	NA	NA	NA	NA
SQF05794.1\|1322368_1324201_-	GTP-binding protein LepA	A0A2K9L2P9	Tupanvirus	2.2e-19	38.1
SQF05795.1\|1324927_1325215_-	Uncharacterised protein	NA	NA	NA	NA
SQF05796.1\|1325296_1325590_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQF05797.1\|1325697_1325841_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQF05798.1\|1326010_1326253_+	lactococcin transport/processing ATP-binding protein LcnC-like	NA	NA	NA	NA
SQF05799.1\|1326524_1327445_+	BlpC ABC transporter	NA	NA	NA	NA
SQF05800.1\|1327976_1328153_+\|bacteriocin	bacteriocin-like peptide	NA	NA	NA	NA
SQF05801.1\|1328328_1328499_-	Uncharacterised protein	NA	NA	NA	NA
SQF05802.1\|1328575_1329274_-	Uncharacterised protein	NA	NA	NA	NA
SQF05803.1\|1329459_1329849_-	Uncharacterised protein	NA	NA	NA	NA
SQF05804.1\|1330073_1330739_-	resolvase	A0A2H4UVX9	Bodo_saltans_virus	5.5e-05	31.3
SQF05805.1\|1330935_1332486_+	putative ATP-dependentend nuclease of the OLD family	NA	NA	NA	NA
SQF05806.1\|1332470_1333547_+	Superfamily I DNA and RNA helicases	NA	NA	NA	NA
SQF05807.1\|1333699_1334653_+\|transposase	transposase IS1239	H7BVY4	unidentified_phage	2.9e-39	35.6
SQF05808.1\|1334844_1335189_-	Uncharacterised protein	NA	NA	NA	NA
SQF05809.1\|1335363_1336404_-	Protein of uncharacterised function (DUF2806)	NA	NA	NA	NA
SQF05810.1\|1336536_1336800_+	Uncharacterised protein	NA	NA	NA	NA
SQF05811.1\|1336809_1337034_+	Uncharacterised protein	NA	NA	NA	NA
SQF05812.1\|1337194_1337362_+	Uncharacterised protein	NA	NA	NA	NA
SQF05813.1\|1337364_1338594_+	conjugative coupling factor TraD, SXT/TOL subfamily	NA	NA	NA	NA
SQF05814.1\|1338776_1339586_+	Type IV secretory pathway, VirD4 components	NA	NA	NA	NA
SQF05815.1\|1339680_1340478_+	Uncharacterised protein	G3MBL2	Bacillus_virus	6.6e-13	26.0
SQF05816.1\|1340461_1340614_+	Uncharacterised protein	NA	NA	NA	NA
SQF05817.1\|1340712_1342347_+	site-specific recombinase	A0A1B1P7M0	Bacillus_phage	9.4e-22	25.2
SQF05818.1\|1342618_1342909_-\|transposase	transposase of IS200 family	A0A1P8BMC0	Lactococcus_phage	6.5e-11	40.2
SQF05819.1\|1343370_1343844_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1629274 : 1676968

Catovirus(20.0%)

tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF06079.1\|1629274_1629511_-\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
SQF06080.1\|1630021_1630795_+	phage protein	NA	NA	NA	NA
SQF06081.1\|1631008_1631614_-	cell surface protein ErfK family	NA	NA	NA	NA
SQF06082.1\|1631708_1634360_-\|tRNA	valyl-tRNA synthetase	A0A1V0S951	Catovirus	6.0e-151	41.3
SQF06083.1\|1634372_1634984_-	shikimate kinase	NA	NA	NA	NA
SQF06084.1\|1635135_1635720_-	acetyltransferase	NA	NA	NA	NA
SQF06085.1\|1635979_1636480_-	DNA-binding protein	NA	NA	NA	NA
SQF06086.1\|1636501_1636756_-	Galactose mutarotase and related enzyme	NA	NA	NA	NA
SQF06087.1\|1638084_1638255_-	membrane protein	NA	NA	NA	NA
SQF06088.1\|1638247_1638391_-	Uncharacterised protein	NA	NA	NA	NA
SQF06089.1\|1638689_1639445_+	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA
SQF06090.1\|1639503_1640586_+	3-dehydroquinate synthase	NA	NA	NA	NA
SQF06091.1\|1640848_1641622_-	phosphorylase family protein	F5CA76	Streptococcus_phi-m46.1-like_phage	2.6e-22	39.6
SQF06092.1\|1641747_1642632_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
SQF06093.1\|1642771_1646215_-	glycosyl hydrolase family 2 protein	NA	NA	NA	NA
SQF06094.1\|1646228_1647713_-	response regulator protein	NA	NA	NA	NA
SQF06095.1\|1647712_1649437_-	sensor histidine kinase	NA	NA	NA	NA
SQF06096.1\|1649426_1650032_-	membrane protein	NA	NA	NA	NA
SQF06097.1\|1650380_1651826_-	sugar-binding protein	NA	NA	NA	NA
SQF06098.1\|1651909_1652836_-	Protein lplC	NA	NA	NA	NA
SQF06099.1\|1652845_1653796_-	sugar transport system permease	NA	NA	NA	NA
SQF06100.1\|1654007_1654901_+	N-acetylmannosamine kinase	NA	NA	NA	NA
SQF06101.1\|1654888_1657063_+	alpha-1,2-mannosidase	NA	NA	NA	NA
SQF06102.1\|1657309_1658701_-	beta-glucosidase	A0A0B5JD41	Pandoravirus	2.1e-38	27.0
SQF06103.1\|1658727_1660422_-	beta-N-acetylglucosaminidase	NA	NA	NA	NA
SQF06104.1\|1660436_1661495_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQF06105.1\|1661627_1662914_+	glycosyl hydrolase	NA	NA	NA	NA
SQF06106.1\|1662928_1665655_+	glycosyl hydrolases family protein	NA	NA	NA	NA
SQF06107.1\|1665843_1666452_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-20	34.6
SQF06108.1\|1666448_1668452_-	membrane protein	NA	NA	NA	NA
SQF06109.1\|1668520_1668847_-	Uncharacterised protein	NA	NA	NA	NA
SQF06110.1\|1669155_1670010_+	transcriptional regulator	NA	NA	NA	NA
SQF06111.1\|1670205_1670787_-	Phosphinothricin N-acetyltransferase	NA	NA	NA	NA
SQF06112.1\|1671046_1671460_-	membrane protein	NA	NA	NA	NA
SQF06113.1\|1672120_1672360_-\|bacteriocin	bacteriocin BlpN-like	NA	NA	NA	NA
SQF06114.1\|1672340_1672595_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQF06115.1\|1672748_1673045_-	putative immunity protein	NA	NA	NA	NA
SQF06116.1\|1673044_1673263_-\|bacteriocin	bacteriocin ubericin-A	NA	NA	NA	NA
SQF06117.1\|1673281_1673497_-	Uncharacterised protein	NA	NA	NA	NA
SQF06118.1\|1674001_1674298_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
SQF06119.1\|1674304_1674553_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQF06120.1\|1674811_1676968_+\|bacteriocin	bacteriocin transport/processing ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	6.2e-21	28.5

Anti-CRISPR protein detection

Acr_ID: LS483328.1|SQF05428.1|967371_967506_+|Uncharacterised-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483328.1|SQF05428.1|967371_967506_+|Uncharacterised-protein

967371_967506_+

44 aa aa

HTH_3

Identity	Hit_domain_coverage
0.5	1.0

963911-1004293

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483328_1	TypeI	1.16\|575685\|34\|LS483328\|CRISPRCasFinder,CRT	575685-575718	34	1000307-1000340	0

1. spacer 1.16|575685|34|LS483328|CRISPRCasFinder,CRT matches to LS483328 position: 1000307-1000340, mismatch: 0

actttcattaagataggtcgtatctggtaagtaa	CRISPR spacer
actttcattaagataggtcgtatctggtaagtaa	Protospacer
**********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483328

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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