CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483336	Streptococcus pyogenes strain NCTC12046 genome assembly, chromosome: 1	2 crisprs	DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,csa3	2	12	11	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483336_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483336_1

979621-979722

Orphan

Consensus_repeat	Method
AATAATTGGTATAGTCTAATTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483336_1

>merge|LS483336|1|979621-979722|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATACCGATAAAAACATTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACATAAAATTGGTATAGTCTAATTATA

>LS483336|1|1|979621-979722|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATA	CCGATAAAAACATTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACA
TAAAATTGGTATAGTCTAATTATA

Protein	Signature genes	Signature genes Name	Protein_function
LS483336.1\|SQF19676.1\|990696_992961_-\|glycogen-phosphorylase	unknown	unknown	gnl\|CDD\|340853
LS483336.1\|SQF19668.1\|980520_982023_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
LS483336.1\|SQF19658.1\|967947_970266_-\|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
LS483336.1\|SQF19675.1\|989819_990440_+\|phage-protein	unknown	unknown	gnl\|CDD\|289729
LS483336.1\|SQF19665.1\|977224_977560_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|225380
LS483336.1\|SQF19672.1\|986844_987543_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224054
LS483336.1\|SQF19662.1\|974985_975822_-\|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
LS483336.1\|SQF19659.1\|970795_972118_+\|amino-acid-symporter	unknown	unknown	gnl\|CDD\|224040
LS483336.1\|SQF19674.1\|988464_989079_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223475
LS483336.1\|SQF19669.1\|982085_983099_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LS483336.1\|SQF19673.1\|987552_988338_+\|ABC-transporter-permease-protein	unknown	unknown	unknown
LS483336.1\|SQF19660.1\|972237_973473_+\|cation-diffusion-facilitator-transporter-family-protein	unknown	unknown	gnl\|CDD\|223131
LS483336.1\|SQF19661.1\|973842_974616_-\|protein-B	unknown	unknown	gnl\|CDD\|369335
LS483336.1\|SQF19666.1\|977755_979570_-\|glucosamine-fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483336.1\|SQF19664.1\|976476_977118_-\|histidine-transporter-permease	unknown	unknown	gnl\|CDD\|223836
LS483336.1\|SQF19657.1\|967336_967585_-\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
LS483336.1\|SQF19663.1\|975837_976467_-\|histidine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
LS483336.1\|SQF19667.1\|979745_980303_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
LS483336.1\|SQF19671.1\|986473_986845_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
LS483336.1\|SQF19670.1\|983178_986289_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|180917

Protein	Function_ID	Function_description	E-value
LS483336.1\|SQF19676.1\|990696_992961_-\|glycogen-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
LS483336.1\|SQF19668.1\|980520_982023_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
LS483336.1\|SQF19658.1\|967947_970266_-\|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
LS483336.1\|SQF19675.1\|989819_990440_+\|phage-protein	gnl\|CDD\|289729	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862). Structure 3D4E shared structural similarity to beta-lactamase inhibitory proteins (BLIP) which already include 1XXM, 1S0W, 1JTG, 2G2U, 2G2W, 2B5R, and 3due. All of structures are involved in beta-lactamase inhibitor complex. (REF http://www.topsan.org/Proteins/JCSG/3d4e).	4.55552e-87
LS483336.1\|SQF19665.1\|977224_977560_-\|phosphonoacetate-hydrolase	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.02984e-64
LS483336.1\|SQF19672.1\|986844_987543_+\|ABC-transporter-family-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.28377e-64
LS483336.1\|SQF19662.1\|974985_975822_-\|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.98005e-109
LS483336.1\|SQF19659.1\|970795_972118_+\|amino-acid-symporter	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
LS483336.1\|SQF19674.1\|988464_989079_-\|membrane-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.14841e-31
LS483336.1\|SQF19669.1\|982085_983099_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LS483336.1\|SQF19660.1\|972237_973473_+\|cation-diffusion-facilitator-transporter-family-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	6.64721e-96
LS483336.1\|SQF19661.1\|973842_974616_-\|protein-B	gnl\|CDD\|369335	pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of several bacterial CAMP factor (Cfa) proteins which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin).	2.06073e-97
LS483336.1\|SQF19666.1\|977755_979570_-\|glucosamine-fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483336.1\|SQF19664.1\|976476_977118_-\|histidine-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.99371e-71
LS483336.1\|SQF19657.1\|967336_967585_-\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.43969e-13
LS483336.1\|SQF19663.1\|975837_976467_-\|histidine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.89978e-111
LS483336.1\|SQF19667.1\|979745_980303_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.3728e-38
LS483336.1\|SQF19671.1\|986473_986845_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.0536e-49
LS483336.1\|SQF19670.1\|983178_986289_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|180917	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.	0

>LS483336.1|SQF19666.1|977755_979570_-|glucosamine-fructose-6-phosphate-aminotransferase
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVANANQTNLIKSVGRIADLRAKIGIDVAGSTGIGHTRWATHGQSTEDNAHPHTSQTGRFVLVHNGVIENYLHIKTEFLAGHDFKGQTDTEIAVHLIGKFVEEDKLSVLEAFKKALSIIEGSYAFALMDSQATDTIYVAKNKSPLLIGLGEGYNMVCSDAMAMIRETSEFMEIHDKELVILTKDKVTVTDYDGKELIRDSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRQLISTYADETGNVQVDPAIITSIQEADRLYILAAGTSYHAGFATKNMLEQLTDTPVELGVASEWGYHMPLLSKKSMFILLSQSGETADSRQVLVKANAMGIPSLTVTNVPGSTLSRESTYTMLIHAGPEIAVASTKAYTAQIAALAFLAKAVGEANGKQEALDFNLVHELSLVAQSIEATLSEKDLVAEKVQALLTTTRNAFYIGRGNDYYVAMEAALKLKEISYIQCEGFAAGELKHGTISLIEEDTPVIALISSSQLVASHTRGNIQEVAARGAHVLTVVEEGLDREGDDIIVNKVHPFLAPIAMVIPTQLIAYYASLQRGLDVDKPRNLAKAVTVE
>LS483336.1|SQF19665.1|977224_977560_-|phosphonoacetate-hydrolase
MSLPNCLQCQSEYVYEDGLLLICPMCAFEWTPGEEATEEEGLVVLDSNGVRLSDGDTITVVKDLKVKGAPKDLKQGTRVKNIRLVEGDHNIDCKIDGFGAMKLKSEFVKKI
>LS483336.1|SQF19664.1|976476_977118_-|histidine-transporter-permease
MTYIQQVLPSLLDGALVTLQVFFIVIILSIPLGAILAFLMKIPFKPLQWFLTLYVWMMRGTPLLLQLIFFYYVLPSVGISFDRMPAAILAFTLNYAAYFAEIFRGGIEAIPKGQYEAAKVLKLKPLQTIRYIILPQVFKIVLPSVFNEVINLVKDSSLVYVLGVGDLLLASKTAANRDATLAPMFIAGLIYLLLIGLVTIISKQVEKRFNYYQ
>LS483336.1|SQF19663.1|975837_976467_-|histidine-ABC-transporter-ATP-binding-protein
MLELKNISKQFGQKTIFDGFNLTVQDGEVLSLVGPSGGGKTTLLRMLAGLESIDSGQVFYNGEDVGIDHLENRNLLGFVFQDFQLFPHLTVLDNLTLSPTITMGKQKADAKEKALDLLARLGLKEHAQVYPYSLSGGQKQRVALARAMMIDPQIIGYDEPTSALDPELRQTVEALIVQNREMGITQIVVTHDLVFAEAISDRIIRVNPK
>LS483336.1|SQF19662.1|974985_975822_-|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein
MIIKKRTVAILAIASSFFLVACQATKSLKSGDAWGVYQKQKSITVGFDNTFVPMGYKDESGKCKGFDIDLAKEVFHQYGLKVNFQAINWDMKEAELNNGKIDVIWNGYSITKERQNKVAFTDSYMRNEQIIVVKKRSDIKTISDMKHKVLGAQSASSGYDSLLRTPKLLKDFIKNKDANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMIPTTFENEAFSVGLRKEDKTLQAKINRALRVLYQNGKFQAISEKWFGDDVATANIKS
>LS483336.1|SQF19661.1|973842_974616_-|protein-B
MKPKHLLCLSTVVAGLALFSTMTHSVLADDASNPDTILMNNNQANLQRDALVQKLDEGHQQLEAIKHEAKGTDIEATVNKAIDAVDHMKSSIRFNTETIYDFSSIGARVEALSDAIKAIVFSTTQLTHKVEKAHTDMGFAITKLVIRIIDPFASVDAIKAQVQEIKALEEKVINYPDLQPTDRATIYTKAKLNKAIWNTRLERDKKVLGIKPFDVYNRLNKAITHAVGVQLNPTTTVQQVDDEVIAVQNALETALKS
>LS483336.1|SQF19660.1|972237_973473_+|cation-diffusion-facilitator-transporter-family-protein
MTQDPIANLKLARKGPIVSIIVYLLLSVAKLLAGYLLNASSLIADGFNNLSDIVGNVALLIGLHLASQPADANHKFGHWKIEDLSSLVTSFIMFLVGFQVLIHTIKSIFSGQQVDIDPLGAIVGIVSAFVMLGVYVFNKRLSKRVKSSALVAASKDNLADAVTSIGTSIAIIAASLHLPVIDHIAAMIITFFILKTAFDIFMESSFSLSDGFDSRHLKKYEKAILEIPKIVAVKSQRARTYGSNVYLDIVLEMNPDLSVYESHSITEKVEQLLSDQFSIYDIDIHVEPAMIPEEEIFDNVAKKLYRYEKLILSKVPDYDHYIAKSFQLIDANGQTVNYEQFLNQEIYYPSNFNHFQIESISQKTMLVTYQLNGNQRTSIWRRHESWSLLFHQITPIAKRQLHHTHYRIVKM
>LS483336.1|SQF19659.1|970795_972118_+|amino-acid-symporter
MIALVKLIDNLVWGPPLLILLVGTGIYLTSRLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAILFAGSGILVALFGIGTFAQVNSITSSLGHSFGLSPQMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVFQSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFVLMVGLGGFLKLELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK
>LS483336.1|SQF19658.1|967947_970266_-|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA
MNPLLNGMNDRQAQAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKQLNIDPKKWNERSILGTISNAKNDLLDEKGYEAQAADMYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVLAYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNRRPKKLWTQNADGEQLVYYRANDERDEAVFVASTISNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDLIAYLTIVANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAIMDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKNFDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRASEDPDELEEERRLAYVGITRAEEVLFMTNANIRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVRFSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLPFGSNSSVEEVTWQIGDIAHHKKWGDGTVLEVSGSGKTMELKIKFPEVGLKKLLASVAPIEKK
>LS483336.1|SQF19657.1|967336_967585_-|transglycosylase-associated-family-protein
MGLIWTLIVGALIGVIAGALTKKGGSMGWIANIAAGLVGSSVGQALLGSWGPSLAGMSLIPSVIGAVIVVMITSFVLNKTNN
>LS483336.1|SQF19667.1|979745_980303_-|signal-peptidase-I
MVKRDFIRNILLLLIVIIGAILLRIFVFSTFKVSPETANTYLKSGDLVTIKKNIQPKYKDFVVYRVGKKDYVSRVIAVEGDSVTYMDDIFYLNNMVESQAYLEKMKAHYLNHAPFGTLYTDDFTVATITADKYQKVPKGKYLLLNDNRKNTNDSRRFGLINASQIKGLVTFRVLPLSDFGFVEVE
>LS483336.1|SQF19668.1|980520_982023_-|pyruvate-kinase
MNKRVKIVATLGPAVEIRGGKKYGEDGYWAGQLDVEESAKKIAELIEAGANVFRFNFSHGDHKEQGDRMATVRLAEEIARQKVGFLLDTKGPEMRTELFADDAKEFSYVTGEKIRVATTQGIQSTRDVIALNVAGSLDIYDEVEVGHTILIDDGKLGLKVIDKDIATRQFIVEVENDGIIAKQKGVNIPNTKIPFPALAERDNADIRFGLEQGLNFIAISFVRTAKDVEEVREICRETGNDHVQLFAKIENQQGIDNLDEIIEAADGIMIARGDMGIEVPFEMVPVFQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGTDATMLSGESANGKYPVESVRTMATIDRNAQTLLNEYGRLDSSAFPRTNKTDVIASAVKDATHSMDIKLVVTITETGNTARAISKFRPDADILAVTFDEKVQRALMINWGVIPVLAEKPASTDDMFEVAERVAVEAGLVQSGDNIVIVAGVPVGTGGTNTMRVRTVK
>LS483336.1|SQF19669.1|982085_983099_-|6-phosphofructokinase
MKRIAVLTSGGDAPGMNAAIRAVVRKAISEGMEVYGINRGYAGMVDGDIFPLGSKEVGDKISRGGTFLYSARYPEFAQLEGQLAGIEQLKKHGIEGVVVIGGDGSYHGAMRLTEHGFPAVGIPGTIDNDIAGTDYTIGFDTAVNTAVEAIDKLRDTSSSHGRTFVVEVMGRNAGDIALWAGIASGADQIIVPEEEFDIEKVASTIQYDFEHKGKNHHIIVLAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDRVIASWMGSHAVELLKEGKGGLAVGIHNEELVESPILGTAEEGALFSLTEEGKIIVNNPHKARLDFAALNRSLSQ
>LS483336.1|SQF19670.1|983178_986289_-|DNA-polymerase-III-subunit-alpha
MFAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPVLGLEVEILYQERQVLLNLIAQNTQGYHQLLKISTAKMSGKLHMDYLCQHLEGIAVIIPSKGWSDTLVVPFDYYIGVDQYTDLSHMDSKRQLIPLRTVRYFAQDDMETLHMLHAIRDNLSLAETPVVESDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPHFNRDKSAKQELQELTEAGLKEKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHLPLKSGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMMNYSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRDFAYWIIEQRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDYFEPNRKKILDNLDGLLVFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGMSKHPLIDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVENHQFDSQISEILGAFPGTTPVVIHYQKNKETIALTKIQVHVTENLKEKLRPFVLKTVFR
>LS483336.1|SQF19671.1|986473_986845_+|GntR-family-transcriptional-regulator
MSWKFDEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ
>LS483336.1|SQF19672.1|986844_987543_+|ABC-transporter-family-protein
MAHLLQLHHVSKSYREKKAIDDLTITIPNGKIIGLLGPNGSGKTTLIKLINGLLQPNKGEIVIDGYRPCVETKKIISYLPDTTYLNENMRIKDMLEFFSDFYSDFDKSKATSLLRDLELDPEDRFKTLSKGNKEKVQLILVMSRKARLYVLDEPIGGVDPAARDYILKTIINSYCENASVIISTHLISDIEPILDEVIFLKQGRLFLSGNADDLRQEYQQSIDSLFRETYKV
>LS483336.1|SQF19673.1|987552_988338_+|ABC-transporter-permease-protein
MFGKLLKYEFRSIGKWYFALNAFVIAIAAILSFTIKLFAQSNSDGLFGVLTNKMLPLTLGLTFGSLIAGSLLSTLLIIIKRFSKSVFGREGYLTLTLPVNSHQIILSKLLASFICSVFNTIILAFAIAIVIVPMFNVNELLEGFFNSFKMDYFINMLTVLAYVLLSTFTSILLIYLSISIGQLFSNRRGLMAFIAYFILVILISVAATYVHNHIFNINTSADSFPFTEQKTTYLLILEQFIEMVMFYLATNFIIKNKLNLQ
>LS483336.1|SQF19674.1|988464_989079_-|membrane-protein
MTKRNSKAYILWQKIIKILGIIALIGTFFLAFWLYRLGILNDSNALKDLVQRYRLWGPFVFIVVQIIQIVFPVIPGGLTTVAGFLIFGPVTGFIYNYVGIIIGSIVLFLLVKTYGRKFILLFVNDKTFYKYERRLETPGYEKLFIFCMASPVSPADIMVMITGLTDMSLKRFVTILLITKPISIIGYSYLFIFGKDVISWFLQH
>LS483336.1|SQF19675.1|989819_990440_+|phage-protein
MTKKHLLTLLLISFFTSFLVACSTTKDKEPQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSLEELISLFGEPNQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGLSQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFENNQLTEMSQVGLEE
>LS483336.1|SQF19676.1|990696_992961_-|glycogen-phosphorylase
MTRFTEYVETKLGKSLTQASNEEIYLSLLNFVKEEASHKAKNSAKRKVYYISAEFLIGKLLSNNLINLGIYKDIKEELAAAGKSIAEVEDVELEPSLGNGGLGRLASCFIDSIASLGINGEGVGLNYHCGLFKQVFKHNEQEAEPNYWIEDQSWLVPTNISYDVPFKNFTLKSRLDRIDVLGYKRDTKNYLNLFDIEGVDYGLIKDGISFDKTQIAKNLTLFLYPDDSDKNGELLRIYQQYFMVSNAAQLIIDEAIERGSNLHDLADYAYVQINDTHPSMVIPELIRLLTEKHGFDFDEAVAVVKNMVGYTNHTILAEALEKWPTAYLNEVVPHLVTIIEKLDALVRSEVSDPAVQIIDESGRVHMAHMDIHFATSVNGVAALHTEILKNSELKAFYDLYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLMAFADDKAVHAKLAEIKFNNKLALKRYLKDNKDIELDEHSIIDTQIKRFHEYKRQQMNALYVIHKYLEIKKGNLPKRKITVIFGGKAAPAYIIAQDIIHLILCLSELINNDPEVSPYLNVHLVENYNVTVAEHLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELAGMENIYTFGKDSDTIINLYATASYVAKDYYDNHPAIKAAVNFIISPELLAFGNEERLDRLYKELISKDWFMTLIDLEEYIEVKEKMLADYEDQDLWMTKVVHNIAKAGFFSSDRTIEQYNEDIWHSR

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Crispr_ID: LS483336_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483336_2

1251124-1251488

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	CRISPRCasFinder
ATTTCAATCCACTCACCCATGAAGGG	CRT
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	PILER-CR

5 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of LS483336_2

>merge|LS483336|2|1251124-1251488|CRISPRCasFinder,CRT,PILER-CR
CTTTCAATCCACTCACCCATGAAGGGCGAGACAGGCGTTCACATGGACGTCTTTTTGTTTTGTGGAATTTCAATCCACTCACCCATGAAGGGCGAGACCCGCATAATTTTTAGGTGTCGCATTACCAAAGTATTTCAATCCACTCACCCATGAAGGGTGAGACAATATCAACTTCTTGGGGACAAGAAATGATCCAAGACATTTCAATCCACTCACCCATGAAGGGTGAGACAAATCGCTATATCTTATCAACAAAACACCAAGAAAATTTCAATCCACTCACCCATGAAGGGTGAGACGGTCTTTACGGTCAGCGAACAATACGCCACGTTTATTTCAATCCACTCACCCATGAAGGGTGAGAC

>LS483336|2|2|1251124-1251488|CRISPRCasFinder
CTTTCAATCCACTCACCCATGAAGGGCGAGAC	AGGCGTTCACATGGACGTCTTTTTGTTTTGTGGA
ATTTCAATCCACTCACCCATGAAGGGCGAGAC	CCGCATAATTTTTAGGTGTCGCATTACCAAAGT
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	AATATCAACTTCTTGGGGACAAGAAATGATCCAAGAC
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	AAATCGCTATATCTTATCAACAAAACACCAAGAAA
ATTTCAATCCACTCACCCATGAAGGGTGAGAC	GGTCTTTACGGTCAGCGAACAATACGCCACGTTT
ATTTCAATCCACTCACCCATGAAGGGTGAGAC

>LS483336|2|1|1251124-1251482|CRT
CTTTCAATCCACTCACCCATGAAGGG	CGAGACAGGCGTTCACATGGACGTCTTTTTGTTTTGTGGA
ATTTCAATCCACTCACCCATGAAGGG	CGAGACCCGCATAATTTTTAGGTGTCGCATTACCAAAGT
ATTTCAATCCACTCACCCATGAAGGG	TGAGACAATATCAACTTCTTGGGGACAAGAAATGATCCAAGAC
ATTTCAATCCACTCACCCATGAAGGG	TGAGACAAATCGCTATATCTTATCAACAAAACACCAAGAAA
ATTTCAATCCACTCACCCATGAAGGG	TGAGACGGTCTTTACGGTCAGCGAACAATACGCCACGTTT
ATTTCAATCCACTCACCCATGAAGGG

>LS483336|2|1|1251125-1251488|PILER-CR
TTTCAATCCACTCACCCATGAAGGGCGAGACA	GGCGTTCACATGGACGTCTTTTTGTTTTGTGGAA
TTTCAATCCACTCACCCATGAAGGGCGAGACC	CGCATAATTTTTAGGTGTCGCATTACCAAAGTA
TTTCAATCCACTCACCCATGAAGGGTGAGACA	ATATCAACTTCTTGGGGACAAGAAATGATCCAAGACA
TTTCAATCCACTCACCCATGAAGGGTGAGACA	AATCGCTATATCTTATCAACAAAACACCAAGAAAA
TTTCAATCCACTCACCCATGAAGGGTGAGACG	GTCTTTACGGTCAGCGAACAATACGCCACGTTTA
TTTCAATCCACTCACCCATGAAGGGTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483336.1\|SQF19957.1\|1245910_1247644_-\|two-component-sensor-kinase	unknown	unknown	gnl\|CDD\|225519
LS483336.1\|SQF19970.1\|1262459_1263023_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|379082
LS483336.1\|SQF19966.1\|1254491_1256387_-\|CRISPR-associated-protein,-Csd1-family	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|187773
LS483336.1\|SQF19965.1\|1253638_1254487_-\|putative-cytoplasmic-protein	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
LS483336.1\|SQF19954.1\|1243393_1243867_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
LS483336.1\|SQF19953.1\|1242571_1243252_-\|Fumarate-and-nitrate-reduction-regulatory-protein	unknown	unknown	gnl\|CDD\|223736
LS483336.1\|SQF19967.1\|1256386_1257115_-\|CRISPR-associated-protein-cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
LS483336.1\|SQF19961.1\|1250253_1250964_-\|cytochrome-c-type-biogenesis-protein	unknown	unknown	gnl\|CDD\|223856
LS483336.1\|SQF19960.1\|1249617_1250241_-\|disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239264
LS483336.1\|SQF19956.1\|1244762_1245644_-\|cytoplasmic-protein	unknown	unknown	gnl\|CDD\|225197
LS483336.1\|SQF19962.1\|1251636_1251930_-\|hypothetical-cytosolic-protein	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|224262
LS483336.1\|SQF19971.1\|1263624_1264020_-\|hypothetical-cytosolic-protein	unknown	unknown	gnl\|CDD\|181104
LS483336.1\|SQF19959.1\|1248468_1249575_-\|bifunctional-methionine-sulfoxide-reductase-A/B	unknown	unknown	gnl\|CDD\|184456
LS483336.1\|SQF19958.1\|1247640_1248381_-\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|227095
LS483336.1\|SQF19952.1\|1241062_1242298_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
LS483336.1\|SQF19955.1\|1244032_1244749_-\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
LS483336.1\|SQF19968.1\|1257247_1259656_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483336.1\|SQF19969.1\|1259809_1262458_-\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235582
LS483336.1\|SQF19964.1\|1252962_1253637_-\|RecB-family-exonuclease	cas4	COG1468_cas4_CAS-I-A:CAS-I-B:CAS-I-C:CAS-I-D:CAS-II-B	gnl\|CDD\|224385
LS483336.1\|SQF19963.1\|1251940_1252966_-\|DNA-polymerase	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360

Protein	Function_ID	Function_description	E-value
LS483336.1\|SQF19957.1\|1245910_1247644_-\|two-component-sensor-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	6.0939e-63
LS483336.1\|SQF19970.1\|1262459_1263023_-\|shikimate-kinase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	0.00452424
LS483336.1\|SQF19966.1\|1254491_1256387_-\|CRISPR-associated-protein,-Csd1-family	gnl\|CDD\|187773	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csd1 family.	0
LS483336.1\|SQF19965.1\|1253638_1254487_-\|putative-cytoplasmic-protein	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	4.45949e-160
LS483336.1\|SQF19954.1\|1243393_1243867_+\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	2.68589e-66
LS483336.1\|SQF19953.1\|1242571_1243252_-\|Fumarate-and-nitrate-reduction-regulatory-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.0783e-39
LS483336.1\|SQF19967.1\|1256386_1257115_-\|CRISPR-associated-protein-cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	2.63062e-117
LS483336.1\|SQF19961.1\|1250253_1250964_-\|cytochrome-c-type-biogenesis-protein	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	4.54755e-43
LS483336.1\|SQF19960.1\|1249617_1250241_-\|disulfide-interchange-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.12746e-34
LS483336.1\|SQF19956.1\|1244762_1245644_-\|cytoplasmic-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.14264e-36
LS483336.1\|SQF19962.1\|1251636_1251930_-\|hypothetical-cytosolic-protein	gnl\|CDD\|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	1.60225e-34
LS483336.1\|SQF19971.1\|1263624_1264020_-\|hypothetical-cytosolic-protein	gnl\|CDD\|181104	PRK07758, PRK07758, hypothetical protein; Provisional.	0.000151829
LS483336.1\|SQF19959.1\|1248468_1249575_-\|bifunctional-methionine-sulfoxide-reductase-A/B	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	1.25156e-162
LS483336.1\|SQF19958.1\|1247640_1248381_-\|two-component-response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.39575e-83
LS483336.1\|SQF19952.1\|1241062_1242298_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
LS483336.1\|SQF19955.1\|1244032_1244749_-\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	6.19284e-105
LS483336.1\|SQF19968.1\|1257247_1259656_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.53085e-160
LS483336.1\|SQF19969.1\|1259809_1262458_-\|valyl-tRNA-synthetase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
LS483336.1\|SQF19964.1\|1252962_1253637_-\|RecB-family-exonuclease	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.18604e-43
LS483336.1\|SQF19963.1\|1251940_1252966_-\|DNA-polymerase	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0

>LS483336.1|SQF19961.1|1250253_1250964_-|cytochrome-c-type-biogenesis-protein
MTLSLVLMVSVFGAGLLSFFSPCIFPVLPVYLGILLDADDSKTITIFGKKLYWYGIVKTLAFIFGLSTIFVILGYGAGFLGNILYAVWFRYLLGALVIILGIHQMGLITIKSLQFQKSLTFHNNKNRNGLFNAFILGLTFSFGWTPCVGPVLSSVLALVASGGNGAWQGGVLMIIYTLGLGIPFLLISFASGIVLKQFNKLKPHMLLLKKVGGVLIIVMGILLMTGTLNNLAQLFG
>LS483336.1|SQF19960.1|1249617_1250241_-|disulfide-interchange-protein
MKKGLLVTTGLACLGLLTACSTQDNMAKKEITQDKMSMAAKKKDKMSTSKDKSMMADKSSDKKMTNDGPMAPDFELKGIDGKTYRLSEFKGKKVYLKFWASWCSICLSTLADTEDLAKMSDKDYVVLTVISPGHQGEKSEADFTKWFQGTDYKDLPVLLDPDGKLLEAYGVRSYPTEVFIGSDGVLAKKHIGYAKKSDIKKTLKGIH
>LS483336.1|SQF19959.1|1248468_1249575_-|bifunctional-methionine-sulfoxide-reductase-A/B
MEHKWKLWLFIVGMVLLIGGASVLIQKGQAKAFSQGKPQLPAKKVKSTKVDPNAPVDQKMIYLAGGCFWGVEEYFSQVDGVLDAVSGYANGRGDTTNYQLIHQTGHAETVEVAYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKKNPNGYCHIDINQATYPVIDESKYPKPSATEIKAKLSADEYRVTQKNETEKAFSNRYWDSFDAGIYVDVVTGEPLFSSKDKFESGCGWPSFSRPISPDVVRYKEDKSFNMTRTEVRSRSGNSHLGHVFTDGPKDQGGLRYCINSLSITFIPKADMEAKGYGYLLSSVE
>LS483336.1|SQF19958.1|1247640_1248381_-|two-component-response-regulator
MYSLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQLAWDLFQKEPYDIVLTDINMPKLNGIQLAELIKEHAPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGKLRKKLELSKKTETIQKLVEQPQKEVSAIAMAIHERLADSDLTLKSLAQQLGFSPNYLSVLIKKELGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFEDMNYFSQRFKQLVGVTPSQYKKGGQA
>LS483336.1|SQF19957.1|1245910_1247644_-|two-component-sensor-kinase
MKRYPLLVQLISYVFVIVIALITTLGLLYYQTSSRNIRQLIERDTRQSIRQSSQFIDAYIKPLKETTSVLAKNSEIQDFASQIHQENDKQVLQLMKMVLATNSDLQAAVLVTKDGRTVSTNPQLIMKTSSDMMAEPWYKAAIDRQAMPVLTPARQLSLSSKKEWVVSVTQEVVDRAGHNLGVLRLDIAYPTIEASLDQLQLGRQGFAFIVNNKHEFVYHPKKSVYSSSKEMAAMKPYLAIQNGYTKDKTSFVYQKLIPNSQWTLVGVASLDQLHRVQRQIFWSFLGTGLLACLICGFATVLALRRWIRPIQQLQQVILAIQKGDRQLRAQETGSPELTDLAQQFNALLDQIDSLMVAVADKEKAIGQYRLQALASQINPHFLYNTLDTIIWMAEFNDSKRVVEVTKSLAKYFRLALNQGNEYIRLADELDHVSQYLFIQKQRYGDKLSYDVQGLDVYADFVIPKLILQPLVENAIYHGIKEVDRKGMIKVTVSDTAQHLMLTVWDNGKGIEDSSLTNSQSLLARGGVGLKNVDQRLKLHYGEGYHMTIHSQSDHFTEIQLSLPKMHELMADDTQENE
>LS483336.1|SQF19956.1|1244762_1245644_-|cytoplasmic-protein
MPLQQAAWQGTYTGQVRAAYLELLERLSVACFEVTPFQSMQANRLAKHITKEWSDPMDYPFEKHPDLATYRVGGKWYAMIFSLLADKLDQIPERLVGQTCEVMTVKVNPKAFPQLLQQEGIYPAYHMSKKNWISIILDDKVTDDKLWTLVTQSRQLVNPNGLSNPNGPDYWVIPANLKYYDIDAEFAANDVILWTQKAGIAVGDYVLIYITAPVKSIRYVCQVLETNIPNEGYRKNPNIDKLMRLRKRQQYKDGLLSFDLMKEHGVAAVRGPRRLSPQLIAFLKEKEYFKENN
>LS483336.1|SQF19955.1|1244032_1244749_-|B3/4-domain-containing-protein
MVEFVADQSFWELFPDAKLGVVLLKDVQNQAESPEDVKQLLADSHELAKAYLTADNFSDNQVVQVYRKAYQHFKTKKGARSSIEALLKRVSNGQSIPSINPLVDIYNAASLRFGLPVGAEDSDSFIGDLRLTTTDGGDDFYLIGDADNNPTLPNELCYKDDIGAVCRCLNWRDGERTMVTEHTKNAFLIIEALDQEGQNRLQEALDFIEGSAKMYLHATPSLHVLDKDNPHVPLFTEN
>LS483336.1|SQF19954.1|1243393_1243867_+|arginine-repressor
MNKKETRHQLIRSLISETTIHTQQELQERLQKNGITITQATLSRDMKELNLVKVTSGNDTHYEALAISQTRWEHRLRFYMEDALVMLKIVQHQIILKTLPGLAQSFGSILDAMQIPEIVATVCGDDTCLIVCEDNEQAKACYETLSHYTPPFFFSNK
>LS483336.1|SQF19953.1|1242571_1243252_-|Fumarate-and-nitrate-reduction-regulatory-protein
MIRREDYQYLRKLNDFRYFSIEQFDKIVGQMEFRKAKKDHILFFEGDRRDKLFLVTSGYFKVEQSDQSGTFMYTDFIRHGTIFPYGGLFTDDYYHFSVVAMTDVTYFYFPVDLFEDYSLENRLQMKHLYSKMSKLLELHELRVRNLITSSASSRVIQSLAILLVEMGKDSDTLPFQLTTTDIAQISGTTRETVSHVLRDLKKQELITIKGKYLTYLDKDYFLQYTK
>LS483336.1|SQF19952.1|1241062_1242298_-|arginine-deiminase
MTAQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI
>LS483336.1|SQF19962.1|1251636_1251930_-|hypothetical-cytosolic-protein
MMVLVTYDVNTETPAGRKRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVDIKHRLTQIIDEKTDSIRFYLLGKNWQRRVETLGRSDSYDPDKGVLLL
>LS483336.1|SQF19963.1|1251940_1252966_-|DNA-polymerase
MKKLLNTLYLTQEDCYVTKEGDNIVIKQEGKVLKRFPFRIIDGIVCFSYLGVSPALVKLCTENQINLSFHTPQGRFCGRYIGSTNGNVLLRREHYRLSDREESLEYAKRFILAKISNSRKYLLRFKRDHRQQIDTKLFEAVNDELIWALEMVQAADNKDSLRGIEGQAANQYFRIFNDLVLTDIKTFYFQGRSKRPPLDCVNALLSFGYSLLTFECQSALEAVGLDSYVGFFHTDRPGRASLALDLVEEFRSYIVDRFVFSLINKGQLQKKHFEVKENGSILLTENGRAIFIDLWQKRKHTEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDLESYPPFMV
>LS483336.1|SQF19964.1|1252962_1253637_-|RecB-family-exonuclease
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQVLHTKADNPYIKEKRKELLVSRAMPISSAELGLSGIMDVVEFYKDDQGVSLRGKRGKWLPKVVEYKRGKPKKDTRDIVQLVAQTMCLEETLDCDINEGCLYYHSVNQRVIVPMTSALRQEVKELAAEMHEVYQSQMLPKAAYFKNCQLCSLVDICKPRLSKKTRSVSRYINEAMTSEEMDL
>LS483336.1|SQF19965.1|1253638_1254487_-|putative-cytoplasmic-protein
MLEHKIDFMVTLEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRNRLQDMGKSIFVQANERIEDDFRSLEKRFSQHFTAKTPDKEIEEKANALWFDVRAFGQVFTYLKKSIGVRGPVSISMAKSLEPIVISSLQITRSINGMEAKNNSGRSSDTMGTKHFVDYGVYVLKGSINAYFAEKTGFSQEDAEAIKEVLVSLFENDASSARPEGSMRVCEVFWFTHSSQLGNVSSARVFDLLEYHQSIEEKSTYDAYQIHLNQEKLAKYEAKGLTVEILEGL
>LS483336.1|SQF19966.1|1254491_1256387_-|CRISPR-associated-protein,-Csd1-family
MDFFTSLLKTYEKAELADLVDHQKRNNEPVLLPIYHTSLKSNGKNIISVKLDKDGQFHKAEFMADKQMIIFPVTADSVARSGSHPAPHPLVDKFAYYSAEMGQSQYDSFHKQLNNWIDYCEEGDVKRFLTIVQQFILKPEFLTLILDSLIGPDYQNNQLKVTFCDATGKEKLIDLSACFLEFSIDQFQGFKNESVSTFKTLHQSYISFVEANREKLGICNISGREEQLTDKHRGLMGNAKIISVSNKREAYKGRFREREDVFSVGYETSEKIHLMLKYLLENKNTSTWLGSSQYLINWFSDDLTNDSRLDIVSPIFDDGLEEDDDDDTPPVITLATEDNKRIGKSFIKGQKLFANDATYYVAILNKTSNGRIALKYFRQLQASQLLTNLNKWQETYSWESRSKFGKSRLRTPTFHDILNVSYGVDRDRFLELDNDNFKSDQIQKLVASLIDGKPMPQSIVKKLGNNVKERHRYRKHWYQVEQVCLAILHKQNGEEFSPMLDHTNQNRSYLFGRLLAIFELIETLRYGLDGNNNDRITNAERYWTAYTGQPTKLMMLLENKIKPYEEPLKLNRRGSWMKLEKEKEEILELLNPLLETETMENPLDYRFIFGYYAEKNYYYTKQNTEVTESEE
>LS483336.1|SQF19967.1|1256386_1257115_-|CRISPR-associated-protein-cas5
MYRSRDFYVRVSGQRALFTNPATKGGSERSSYSVPTRQALNGIVDAIYYKPTFTNIVTEIKVINQIQTELQGVRALLHDYSADLSYVSYLSDVVYLIKFHFVWNEDRKDLNSDRLPAKHEAIMERSIRKGGRRDVFLGTRECLGLVDDISQEEYETTVSYYNGVNIDLGIMFHSFAYPKDKKTPLKSYFTKTVMKNGVITFKAQSECDIVNTLSSYAFKAPEEIKSVNDECMEYDAMEKGEN
>LS483336.1|SQF19968.1|1257247_1259656_-|CRISPR-associated-helicase-Cas3
MRMILAHYDCKKDKKQSLDEHLWHVACSSRQEASIIGQGDVLFLIGLYHDLGKADRTFQDKILNNPNRHVDHSYAGAKYLCSIIGPHLKNRGVDKNERMTFNEIVGYVISAHHGMYDLCYYFDDAEYYGFNKFKNRINRDLDGYHYHEDIKGYALKLEKKLCDYGYKDLRELIDKAFDNYQQAMSSLNWQDKSEWDYYQSCMVRLYLSLLKNADILDTVNAYGLKISPMDKTERSFLKHSYLAAIEQKYASFGQPNNQLNTIRTEIAERVKERGKRDSKGIYRLDLPTGAGKTNLSMRYAFHQLLHHDKSRFFYITPFLSVLEQNASEIRKVTGDLGVLEHHSNVVKQANEDDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQSLPIEVTTLFNLTMNFLNKVMDTTIVLCTATQPAYDSSEIDHRICYGGNLGELAEIVELTIEEKQIFSRTELRKFDDSDQKVHLTDVINLILGEENSVLAIFNTKKTVHNCYTMLKDMTDRPVYQLSTNMCAQHRLDLIAKIKTELQNNIPIICISTQLIEAGVDVDFHRVIRSYSGIDSIIQAAGRCNREGKRDKGQVTLVNLTNEEENISRLTEIKAKKEATESILHKIGSPIDILTLNRDFFEYYYANNQGLMDYPLEDNLSIYDYLSLNIYQTANKKFKGKLKQAFKTAGAKMNLINNDMIGILVPYGEAEKKLAYLEELGMSHFLSAEDYQTIKSLLKELQPFTVNVRENDPLFETTKSYLNGQILVLTSEYYDTERGVKYDSASFYF
>LS483336.1|SQF19969.1|1259809_1262458_-|valyl-tRNA-synthetase
MTELSPKYNPAEVEAGRYQKWLDADVFKPSGDQKAKPYSIVIPPPNVTGKLHLGHAWDTTLQDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEERLRGQGITRYDLGREKFLDKVWEWKDEYATTIKEQWGKMGLSVDYSRERFTLDEGLSKAVRKVFVDLYKKGWIYRGEFIINWDPAARTALSDIEVIHKDVEGAFYHMNYMLEDGSRALQVATTRPETMFGDVAVAVNPEDPRYKDLIGKNVILPIVNKLIPIVGDEHADPEFGTGVVKITPAHDPNDFEVGQRHNLPQVNVMNDDGTMNELAGNFAGMDRFEARQATVAKLEELGALVNIEKRVHSVGHSERSDAVVEPRLSTQWFVKMDELAKQAMDNQETDDRVDFYPPRFNDTFLQWMENVHDWVISRQLWWGHQIPAWYNAEGEIYVGEEAPEGDGWTQDEDVLDTWFSSALWPFSTMGWPDTDVEDFKRYFPTSTLVTGYDIIFFWVSRMIFQSLEFTGRQPFQNVLIHGLIRDEEGRKMSKSLGNGIDPMDVIEKYGADSLRWFLSNGSAPGQDVRFSYEKMDASWNFINKIWNISRYILMNNEGLTLEEAESNVAKVAASEAGNVTDQWILHNLNETIAKVTENFDKFEFGVAGHILYNFIWEEFANWYVELTKEVLYSDNEAEKVITRSVLLYTLDKILRLLHPIMPFVTEEIYAQYAQGSIVTVDYPVVRPAFENEAAHKGVESLKDLIRAVRNARAEVNVAPSKPITILVKTADSELEDFFTSNVNYIKRFTNPEKLEISSAIAAPELAMTSIITGAEIYLPLADLLNVEEELARLDKELAKWQKELDMVGKKLGNERFVANAKPEVVQKEKDKQADYQAKYDATQERIAEMQKIKS
>LS483336.1|SQF19970.1|1262459_1263023_-|shikimate-kinase
MNLIIIGAQASGKMTIGQEVARQTGMTLFHNHDSIDFVLRFMPWSQESTALIERIRFAFFETFAKTGQDMIFTIVIDFNDPNDVAMLEKIQAVFQSYDQEVLFVELKTDIEERLKRNRTENRLKHKPLKRNIEWSEQDIQSTMAYAVFNPEEPPKTLTHYQKINNTHLTAAETAQLIIQKMTHIKEN
>LS483336.1|SQF19971.1|1263624_1264020_-|hypothetical-cytosolic-protein
MAKQKNRKKALKLEMKRNGLLKKAGQVFDKAVESVETAVDKTISAGKNLVEKGSQTVENLTASKERLTLDEFAGQPVVAGIRSDLIETLYAEGIHSAQAFKEWTEKDLLALKGIGPATVKKLVENGASFKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	LS483336.1	1587499-1587532	2	0.941
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	LS483336.1	1587499-1587532	2	0.941

1. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to position: 1587499-1587532, mismatch: 2, identity: 0.941

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

2. spacer 2.11|1251157|34|LS483336|PILER-CR matches to position: 1587499-1587532, mismatch: 2, identity: 0.941

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448681	Streptococcus phage Javan141, complete genome	11557-11590	0	1.0
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448778	Streptococcus phage Javan493, complete genome	13836-13869	0	1.0
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448683	Streptococcus phage Javan149, complete genome	15833-15866	0	1.0
LS483336_2	2.3\|1251287\|37\|LS483336\|CRISPRCasFinder	1251287-1251323	37	MK448798	Streptococcus phage Javan533, complete genome	2383-2419	0	1.0
LS483336_2	2.3\|1251287\|37\|LS483336\|CRISPRCasFinder	1251287-1251323	37	MK448783	Streptococcus phage Javan503, complete genome	2303-2339	0	1.0
LS483336_2	2.3\|1251287\|37\|LS483336\|CRISPRCasFinder	1251287-1251323	37	MK448967	Streptococcus phage Javan510, complete genome	2384-2420	0	1.0
LS483336_2	2.3\|1251287\|37\|LS483336\|CRISPRCasFinder	1251287-1251323	37	KY349816	Streptococcus phage Str01, complete genome	24547-24583	0	1.0
LS483336_2	2.3\|1251287\|37\|LS483336\|CRISPRCasFinder	1251287-1251323	37	NC_004588	Streptococcus prophage 315.5, complete genome	2533-2569	0	1.0
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	MK448960	Streptococcus phage Javan492, complete genome	6579-6613	0	1.0
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	MK448762	Streptococcus phage Javan447, complete genome	6705-6739	0	1.0
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	NC_028700	Streptococcus phage T12, complete genome	6542-6576	0	1.0
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	MK448790	Streptococcus phage Javan515, complete genome	6992-7026	0	1.0
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	MK448954	Streptococcus phage Javan476, complete genome	6660-6694	0	1.0
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448681	Streptococcus phage Javan141, complete genome	11557-11590	0	1.0
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448778	Streptococcus phage Javan493, complete genome	13836-13869	0	1.0
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448683	Streptococcus phage Javan149, complete genome	15833-15866	0	1.0
LS483336_2	2.13\|1251288\|37\|LS483336\|PILER-CR	1251288-1251324	37	MK448798	Streptococcus phage Javan533, complete genome	2383-2419	0	1.0
LS483336_2	2.13\|1251288\|37\|LS483336\|PILER-CR	1251288-1251324	37	MK448783	Streptococcus phage Javan503, complete genome	2303-2339	0	1.0
LS483336_2	2.13\|1251288\|37\|LS483336\|PILER-CR	1251288-1251324	37	MK448967	Streptococcus phage Javan510, complete genome	2384-2420	0	1.0
LS483336_2	2.13\|1251288\|37\|LS483336\|PILER-CR	1251288-1251324	37	KY349816	Streptococcus phage Str01, complete genome	24547-24583	0	1.0
LS483336_2	2.13\|1251288\|37\|LS483336\|PILER-CR	1251288-1251324	37	NC_004588	Streptococcus prophage 315.5, complete genome	2533-2569	0	1.0
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	MK448960	Streptococcus phage Javan492, complete genome	6579-6613	0	1.0
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	MK448762	Streptococcus phage Javan447, complete genome	6705-6739	0	1.0
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	NC_028700	Streptococcus phage T12, complete genome	6542-6576	0	1.0
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	MK448790	Streptococcus phage Javan515, complete genome	6992-7026	0	1.0
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	MK448954	Streptococcus phage Javan476, complete genome	6660-6694	0	1.0
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448675	Streptococcus phage Javan129, complete genome	16497-16530	1	0.971
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448850	Streptococcus phage Javan132, complete genome	15834-15867	1	0.971
LS483336_2	2.3\|1251287\|37\|LS483336\|CRISPRCasFinder	1251287-1251323	37	MK448681	Streptococcus phage Javan141, complete genome	2055-2091	1	0.973
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	MK448795	Streptococcus phage Javan527, complete genome	12262-12296	1	0.971
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	MK448950	Streptococcus phage Javan464, complete genome	6588-6622	1	0.971
LS483336_2	2.4\|1251356\|35\|LS483336\|CRISPRCasFinder	1251356-1251390	35	MK448683	Streptococcus phage Javan149, complete genome	8470-8504	1	0.971
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448675	Streptococcus phage Javan129, complete genome	16497-16530	1	0.971
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448850	Streptococcus phage Javan132, complete genome	15834-15867	1	0.971
LS483336_2	2.13\|1251288\|37\|LS483336\|PILER-CR	1251288-1251324	37	MK448681	Streptococcus phage Javan141, complete genome	2055-2091	1	0.973
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	MK448795	Streptococcus phage Javan527, complete genome	12262-12296	1	0.971
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	MK448950	Streptococcus phage Javan464, complete genome	6588-6622	1	0.971
LS483336_2	2.14\|1251357\|35\|LS483336\|PILER-CR	1251357-1251391	35	MK448683	Streptococcus phage Javan149, complete genome	8470-8504	1	0.971
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448676	Streptococcus phage Javan131, complete genome	18771-18804	2	0.941
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448690	Streptococcus phage Javan169, complete genome	15398-15431	2	0.941
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448854	Streptococcus phage Javan146, complete genome	16201-16234	2	0.941
LS483336_2	2.5\|1251423\|34\|LS483336\|CRISPRCasFinder	1251423-1251456	34	MK448761	Streptococcus phage Javan445, complete genome	24703-24736	2	0.941
LS483336_2	2.5\|1251423\|34\|LS483336\|CRISPRCasFinder	1251423-1251456	34	MK448760	Streptococcus phage Javan443, complete genome	24703-24736	2	0.941
LS483336_2	2.5\|1251423\|34\|LS483336\|CRISPRCasFinder	1251423-1251456	34	NC_004585	Streptococcus prophage 315.2, complete genome	22807-22840	2	0.941
LS483336_2	2.5\|1251423\|34\|LS483336\|CRISPRCasFinder	1251423-1251456	34	MK448966	Streptococcus phage Javan508, complete genome	22662-22695	2	0.941
LS483336_2	2.5\|1251423\|34\|LS483336\|CRISPRCasFinder	1251423-1251456	34	MK448772	Streptococcus phage Javan483, complete genome	22676-22709	2	0.941
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448676	Streptococcus phage Javan131, complete genome	18771-18804	2	0.941
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448690	Streptococcus phage Javan169, complete genome	15398-15431	2	0.941
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448854	Streptococcus phage Javan146, complete genome	16201-16234	2	0.941
LS483336_2	2.15\|1251424\|34\|LS483336\|PILER-CR	1251424-1251457	34	MK448761	Streptococcus phage Javan445, complete genome	24703-24736	2	0.941
LS483336_2	2.15\|1251424\|34\|LS483336\|PILER-CR	1251424-1251457	34	MK448760	Streptococcus phage Javan443, complete genome	24703-24736	2	0.941
LS483336_2	2.15\|1251424\|34\|LS483336\|PILER-CR	1251424-1251457	34	NC_004585	Streptococcus prophage 315.2, complete genome	22807-22840	2	0.941
LS483336_2	2.15\|1251424\|34\|LS483336\|PILER-CR	1251424-1251457	34	MK448966	Streptococcus phage Javan508, complete genome	22662-22695	2	0.941
LS483336_2	2.15\|1251424\|34\|LS483336\|PILER-CR	1251424-1251457	34	MK448772	Streptococcus phage Javan483, complete genome	22676-22709	2	0.941
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448960	Streptococcus phage Javan492, complete genome	13066-13099	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448762	Streptococcus phage Javan447, complete genome	13193-13226	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448798	Streptococcus phage Javan533, complete genome	13948-13981	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448775	Streptococcus phage Javan489, complete genome	13770-13803	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448794	Streptococcus phage Javan525, complete genome	11967-12000	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448953	Streptococcus phage Javan474, complete genome	16564-16597	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448790	Streptococcus phage Javan515, complete genome	13621-13654	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448944	Streptococcus phage Javan452, complete genome	14146-14179	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448967	Streptococcus phage Javan510, complete genome	13949-13982	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448765	Streptococcus phage Javan459, complete genome	11966-11999	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	NC_004588	Streptococcus prophage 315.5, complete genome	14098-14131	3	0.912
LS483336_2	2.5\|1251423\|34\|LS483336\|CRISPRCasFinder	1251423-1251456	34	MK448750	Streptococcus phage Javan393, complete genome	24950-24983	3	0.912
LS483336_2	2.8\|1251281\|43\|LS483336\|CRT	1251281-1251323	43	MK448798	Streptococcus phage Javan533, complete genome	2383-2425	3	0.93
LS483336_2	2.8\|1251281\|43\|LS483336\|CRT	1251281-1251323	43	MK448783	Streptococcus phage Javan503, complete genome	2303-2345	3	0.93
LS483336_2	2.8\|1251281\|43\|LS483336\|CRT	1251281-1251323	43	MK448967	Streptococcus phage Javan510, complete genome	2384-2426	3	0.93
LS483336_2	2.8\|1251281\|43\|LS483336\|CRT	1251281-1251323	43	KY349816	Streptococcus phage Str01, complete genome	24547-24589	3	0.93
LS483336_2	2.8\|1251281\|43\|LS483336\|CRT	1251281-1251323	43	NC_004588	Streptococcus prophage 315.5, complete genome	2533-2575	3	0.93
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448960	Streptococcus phage Javan492, complete genome	13066-13099	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448762	Streptococcus phage Javan447, complete genome	13193-13226	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448798	Streptococcus phage Javan533, complete genome	13948-13981	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448775	Streptococcus phage Javan489, complete genome	13770-13803	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448794	Streptococcus phage Javan525, complete genome	11967-12000	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448953	Streptococcus phage Javan474, complete genome	16564-16597	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448790	Streptococcus phage Javan515, complete genome	13621-13654	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448944	Streptococcus phage Javan452, complete genome	14146-14179	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448967	Streptococcus phage Javan510, complete genome	13949-13982	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448765	Streptococcus phage Javan459, complete genome	11966-11999	3	0.912
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	NC_004588	Streptococcus prophage 315.5, complete genome	14098-14131	3	0.912
LS483336_2	2.15\|1251424\|34\|LS483336\|PILER-CR	1251424-1251457	34	MK448750	Streptococcus phage Javan393, complete genome	24950-24983	3	0.912
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448511	Streptococcus satellite phage Javan473, complete genome	11555-11588	4	0.882
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448661	Streptococcus satellite phage Javan96, complete genome	11711-11744	4	0.882
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448517	Streptococcus satellite phage Javan495, complete genome	10273-10306	4	0.882
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448323	Streptococcus satellite phage Javan120, complete genome	12179-12212	4	0.882
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK449010	Streptococcus phage Javan90, complete genome	13294-13327	4	0.882
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448833	Streptococcus phage Javan87, complete genome	13294-13327	4	0.882
LS483336_2	2.8\|1251281\|43\|LS483336\|CRT	1251281-1251323	43	MK448681	Streptococcus phage Javan141, complete genome	2055-2097	4	0.907
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448511	Streptococcus satellite phage Javan473, complete genome	11555-11588	4	0.882
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448661	Streptococcus satellite phage Javan96, complete genome	11711-11744	4	0.882
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448517	Streptococcus satellite phage Javan495, complete genome	10273-10306	4	0.882
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448323	Streptococcus satellite phage Javan120, complete genome	12179-12212	4	0.882
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK449010	Streptococcus phage Javan90, complete genome	13294-13327	4	0.882
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448833	Streptococcus phage Javan87, complete genome	13294-13327	4	0.882
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448672	Streptococcus phage Javan117, complete genome	11356-11389	5	0.853
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448849	Streptococcus phage Javan128, complete genome	10905-10938	5	0.853
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448681	Streptococcus phage Javan141, complete genome	11557-11596	5	0.875
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448778	Streptococcus phage Javan493, complete genome	13836-13875	5	0.875
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448683	Streptococcus phage Javan149, complete genome	15833-15872	5	0.875
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	MK448960	Streptococcus phage Javan492, complete genome	6573-6613	5	0.878
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	MK448762	Streptococcus phage Javan447, complete genome	6699-6739	5	0.878
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	NC_028700	Streptococcus phage T12, complete genome	6536-6576	5	0.878
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	MK448790	Streptococcus phage Javan515, complete genome	6986-7026	5	0.878
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	MK448954	Streptococcus phage Javan476, complete genome	6654-6694	5	0.878
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	MK448795	Streptococcus phage Javan527, complete genome	12256-12296	5	0.878
LS483336_2	2.10\|1251417\|40\|LS483336\|CRT	1251417-1251456	40	MK448761	Streptococcus phage Javan445, complete genome	24703-24742	5	0.875
LS483336_2	2.10\|1251417\|40\|LS483336\|CRT	1251417-1251456	40	MK448760	Streptococcus phage Javan443, complete genome	24703-24742	5	0.875
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448672	Streptococcus phage Javan117, complete genome	11356-11389	5	0.853
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448849	Streptococcus phage Javan128, complete genome	10905-10938	5	0.853
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448514	Streptococcus satellite phage Javan480, complete genome	11330-11363	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448347	Streptococcus satellite phage Javan171, complete genome	11330-11363	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448521	Streptococcus satellite phage Javan518, complete genome	12340-12373	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448973	Streptococcus phage Javan522, complete genome	14294-14327	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	NC_028700	Streptococcus phage T12, complete genome	13803-13836	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448958	Streptococcus phage Javan486, complete genome	13745-13778	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448694	Streptococcus phage Javan179, complete genome	15160-15193	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448950	Streptococcus phage Javan464, complete genome	13849-13882	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448975	Streptococcus phage Javan526, complete genome	14654-14687	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448782	Streptococcus phage Javan501, complete genome	16940-16973	6	0.824
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448675	Streptococcus phage Javan129, complete genome	16497-16536	6	0.85
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448850	Streptococcus phage Javan132, complete genome	15834-15873	6	0.85
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	MK448950	Streptococcus phage Javan464, complete genome	6582-6622	6	0.854
LS483336_2	2.9\|1251350\|41\|LS483336\|CRT	1251350-1251390	41	MK448683	Streptococcus phage Javan149, complete genome	8464-8504	6	0.854
LS483336_2	2.10\|1251417\|40\|LS483336\|CRT	1251417-1251456	40	MK448750	Streptococcus phage Javan393, complete genome	24950-24989	6	0.85
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448514	Streptococcus satellite phage Javan480, complete genome	11330-11363	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448347	Streptococcus satellite phage Javan171, complete genome	11330-11363	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448521	Streptococcus satellite phage Javan518, complete genome	12340-12373	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448973	Streptococcus phage Javan522, complete genome	14294-14327	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	NC_028700	Streptococcus phage T12, complete genome	13803-13836	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448958	Streptococcus phage Javan486, complete genome	13745-13778	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448694	Streptococcus phage Javan179, complete genome	15160-15193	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448950	Streptococcus phage Javan464, complete genome	13849-13882	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448975	Streptococcus phage Javan526, complete genome	14654-14687	6	0.824
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448782	Streptococcus phage Javan501, complete genome	16940-16973	6	0.824
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448662	Streptococcus satellite phage Javan97, complete genome	14880-14913	7	0.794
LS483336_2	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	MK448686	Streptococcus phage Javan157, complete genome	15480-15513	7	0.794
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448676	Streptococcus phage Javan131, complete genome	18771-18810	7	0.825
LS483336_2	2.10\|1251417\|40\|LS483336\|CRT	1251417-1251456	40	NC_004585	Streptococcus prophage 315.2, complete genome	22807-22846	7	0.825
LS483336_2	2.10\|1251417\|40\|LS483336\|CRT	1251417-1251456	40	MK448966	Streptococcus phage Javan508, complete genome	22662-22701	7	0.825
LS483336_2	2.10\|1251417\|40\|LS483336\|CRT	1251417-1251456	40	MK448772	Streptococcus phage Javan483, complete genome	22676-22715	7	0.825
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448662	Streptococcus satellite phage Javan97, complete genome	14880-14913	7	0.794
LS483336_2	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	MK448686	Streptococcus phage Javan157, complete genome	15480-15513	7	0.794
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448511	Streptococcus satellite phage Javan473, complete genome	11555-11594	8	0.8
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448661	Streptococcus satellite phage Javan96, complete genome	11711-11750	8	0.8
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448517	Streptococcus satellite phage Javan495, complete genome	10273-10312	8	0.8
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448323	Streptococcus satellite phage Javan120, complete genome	12179-12218	9	0.775
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448514	Streptococcus satellite phage Javan480, complete genome	11330-11369	10	0.75
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448347	Streptococcus satellite phage Javan171, complete genome	11330-11369	10	0.75
LS483336_2	2.6\|1251150\|40\|LS483336\|CRT	1251150-1251189	40	MK448521	Streptococcus satellite phage Javan518, complete genome	12340-12379	10	0.75

1. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 0, identity: 1.0

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcacatggacgtctttttgttttgtgga	Protospacer
**********************************

2. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 0, identity: 1.0

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcacatggacgtctttttgttttgtgga	Protospacer
**********************************

3. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 0, identity: 1.0

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcacatggacgtctttttgttttgtgga	Protospacer
**********************************

4. spacer 2.3|1251287|37|LS483336|CRISPRCasFinder matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

5. spacer 2.3|1251287|37|LS483336|CRISPRCasFinder matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

6. spacer 2.3|1251287|37|LS483336|CRISPRCasFinder matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

7. spacer 2.3|1251287|37|LS483336|CRISPRCasFinder matches to KY349816 (Streptococcus phage Str01, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

8. spacer 2.3|1251287|37|LS483336|CRISPRCasFinder matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

9. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

10. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

11. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

12. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

13. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

14. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 0, identity: 1.0

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcacatggacgtctttttgttttgtgga	Protospacer
**********************************

15. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 0, identity: 1.0

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcacatggacgtctttttgttttgtgga	Protospacer
**********************************

16. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 0, identity: 1.0

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcacatggacgtctttttgttttgtgga	Protospacer
**********************************

17. spacer 2.13|1251288|37|LS483336|PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

18. spacer 2.13|1251288|37|LS483336|PILER-CR matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

19. spacer 2.13|1251288|37|LS483336|PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

20. spacer 2.13|1251288|37|LS483336|PILER-CR matches to KY349816 (Streptococcus phage Str01, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

21. spacer 2.13|1251288|37|LS483336|PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 0, identity: 1.0

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatccaagac	Protospacer
*************************************

22. spacer 2.14|1251357|35|LS483336|PILER-CR matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

23. spacer 2.14|1251357|35|LS483336|PILER-CR matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

24. spacer 2.14|1251357|35|LS483336|PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

25. spacer 2.14|1251357|35|LS483336|PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

26. spacer 2.14|1251357|35|LS483336|PILER-CR matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
***********************************

27. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 1, identity: 0.971

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgtgga	Protospacer
********.*************************

28. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 1, identity: 0.971

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgtgga	Protospacer
********.*************************

29. spacer 2.3|1251287|37|LS483336|CRISPRCasFinder matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 1, identity: 0.973

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatacaagac	Protospacer
****************************** ******

30. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 1, identity: 0.971

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacactaagaaa	Protospacer
****************************.******

31. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 1, identity: 0.971

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaataaa	Protospacer
******************************* ***

32. spacer 2.4|1251356|35|LS483336|CRISPRCasFinder matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 1, identity: 0.971

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaaaaaa	Protospacer
*******************************.***

33. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 1, identity: 0.971

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgtgga	Protospacer
********.*************************

34. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 1, identity: 0.971

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgtgga	Protospacer
********.*************************

35. spacer 2.13|1251288|37|LS483336|PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 1, identity: 0.973

aatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
aatatcaacttcttggggacaagaaatgatacaagac	Protospacer
****************************** ******

36. spacer 2.14|1251357|35|LS483336|PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 1, identity: 0.971

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacactaagaaa	Protospacer
****************************.******

37. spacer 2.14|1251357|35|LS483336|PILER-CR matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 1, identity: 0.971

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaataaa	Protospacer
******************************* ***

38. spacer 2.14|1251357|35|LS483336|PILER-CR matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 1, identity: 0.971

aaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
aaatcgctatatcttatcaacaaaacaccaaaaaa	Protospacer
*******************************.***

39. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 2, identity: 0.941

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aagcgttcacacggacgtctttttgttttgtgga	Protospacer
*.*********.**********************

40. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 2, identity: 0.941

aggcgttc-acatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttctgcatggacgtctttttgttttgtgga	Protospacer
 ******* .*************************

41. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 2, identity: 0.941

aggcgttc-acatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttctgcatggacgtctttttgttttgtgga	Protospacer
 ******* .*************************

42. spacer 2.5|1251423|34|LS483336|CRISPRCasFinder matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
agtctttacggtcagcaaacaatacgccacgttt	Protospacer
.***************.*****************

43. spacer 2.5|1251423|34|LS483336|CRISPRCasFinder matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
agtctttacggtcagcaaacaatacgccacgttt	Protospacer
.***************.*****************

44. spacer 2.5|1251423|34|LS483336|CRISPRCasFinder matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
ggtctttacgatcggcgaacaatacgccacgttt	Protospacer
**********.**.********************

45. spacer 2.5|1251423|34|LS483336|CRISPRCasFinder matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
ggtctttacgatcggcgaacaatacgccacgttt	Protospacer
**********.**.********************

46. spacer 2.5|1251423|34|LS483336|CRISPRCasFinder matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
ggtctttacgatcggcgaacaatacgccacgttt	Protospacer
**********.**.********************

47. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 2, identity: 0.941

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aagcgttcacacggacgtctttttgttttgtgga	Protospacer
*.*********.**********************

48. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 2, identity: 0.941

aggcgttc-acatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttctgcatggacgtctttttgttttgtgga	Protospacer
 ******* .*************************

49. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 2, identity: 0.941

aggcgttc-acatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttctgcatggacgtctttttgttttgtgga	Protospacer
 ******* .*************************

50. spacer 2.15|1251424|34|LS483336|PILER-CR matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
agtctttacggtcagcaaacaatacgccacgttt	Protospacer
.***************.*****************

51. spacer 2.15|1251424|34|LS483336|PILER-CR matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
agtctttacggtcagcaaacaatacgccacgttt	Protospacer
.***************.*****************

52. spacer 2.15|1251424|34|LS483336|PILER-CR matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
ggtctttacgatcggcgaacaatacgccacgttt	Protospacer
**********.**.********************

53. spacer 2.15|1251424|34|LS483336|PILER-CR matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
ggtctttacgatcggcgaacaatacgccacgttt	Protospacer
**********.**.********************

54. spacer 2.15|1251424|34|LS483336|PILER-CR matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 2, identity: 0.941

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
ggtctttacgatcggcgaacaatacgccacgttt	Protospacer
**********.**.********************

55. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

56. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

57. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

58. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

59. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

60. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

61. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

62. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

63. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

64. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

65. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

66. spacer 2.5|1251423|34|LS483336|CRISPRCasFinder matches to MK448750 (Streptococcus phage Javan393, complete genome) position: , mismatch: 3, identity: 0.912

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
agtctttacggtcagcaaacaatacaccacgttt	Protospacer
.***************.********.********

67. spacer 2.8|1251281|43|LS483336|CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 3, identity: 0.93

tgagacaatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
ttataaaatatcaacttcttggggacaagaaatgatccaagac	Protospacer
* * * *************************************

68. spacer 2.8|1251281|43|LS483336|CRT matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 3, identity: 0.93

tgagacaatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
ttataaaatatcaacttcttggggacaagaaatgatccaagac	Protospacer
* * * *************************************

69. spacer 2.8|1251281|43|LS483336|CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 3, identity: 0.93

tgagacaatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
ttataaaatatcaacttcttggggacaagaaatgatccaagac	Protospacer
* * * *************************************

70. spacer 2.8|1251281|43|LS483336|CRT matches to KY349816 (Streptococcus phage Str01, complete genome) position: , mismatch: 3, identity: 0.93

tgagacaatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
ttataaaatatcaacttcttggggacaagaaatgatccaagac	Protospacer
* * * *************************************

71. spacer 2.8|1251281|43|LS483336|CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 3, identity: 0.93

tgagacaatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
ttataaaatatcaacttcttggggacaagaaatgatccaagac	Protospacer
* * * *************************************

72. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

73. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

74. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

75. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

76. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

77. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

78. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

79. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

80. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

81. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

82. spacer 2.11|1251157|34|LS483336|PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 3, identity: 0.912

aggcgtt-cacatggacgtctttttgttttgtgga	CRISPR spacer
-ggcgttccgtatggacgtctttttgttttgtgga	Protospacer
 ****** *..************************

83. spacer 2.15|1251424|34|LS483336|PILER-CR matches to MK448750 (Streptococcus phage Javan393, complete genome) position: , mismatch: 3, identity: 0.912

ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
agtctttacggtcagcaaacaatacaccacgttt	Protospacer
.***************.********.********

84. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448511 (Streptococcus satellite phage Javan473, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcatatggacgtctttttgttttgttcg	Protospacer
*********.*********************  .

85. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448661 (Streptococcus satellite phage Javan96, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgttcg	Protospacer
********.**********************  .

86. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448517 (Streptococcus satellite phage Javan495, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcatatggacgtctttttgttttgttcg	Protospacer
*********.*********************  .

87. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448323 (Streptococcus satellite phage Javan120, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgttcg	Protospacer
********.**********************  .

88. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga-	CRISPR spacer
ggacgttcgcatggacgtctttttg-tttgtggag	Protospacer
.*.*****.**************** ********

89. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga-	CRISPR spacer
ggacgttcgcatggacgtctttttg-tttgtggag	Protospacer
.*.*****.**************** ********

90. spacer 2.8|1251281|43|LS483336|CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 4, identity: 0.907

tgagacaatatcaacttcttggggacaagaaatgatccaagac	CRISPR spacer
ttataaaatatcaacttcttggggacaagaaatgatacaagac	Protospacer
* * * ****************************** ******

91. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448511 (Streptococcus satellite phage Javan473, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcatatggacgtctttttgttttgttcg	Protospacer
*********.*********************  .

92. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448661 (Streptococcus satellite phage Javan96, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgttcg	Protospacer
********.**********************  .

93. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448517 (Streptococcus satellite phage Javan495, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcatatggacgtctttttgttttgttcg	Protospacer
*********.*********************  .

94. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448323 (Streptococcus satellite phage Javan120, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgttcg	Protospacer
********.**********************  .

95. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga-	CRISPR spacer
ggacgttcgcatggacgtctttttg-tttgtggag	Protospacer
.*.*****.**************** ********

96. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 4, identity: 0.882

aggcgttcacatggacgtctttttgttttgtgga-	CRISPR spacer
ggacgttcgcatggacgtctttttg-tttgtggag	Protospacer
.*.*****.**************** ********

97. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 5, identity: 0.853

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgtgtggagaa	Protospacer
********.***************** * * *.*

98. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 5, identity: 0.853

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgtgtggagaa	Protospacer
********.***************** * * *.*

99. spacer 2.6|1251150|40|LS483336|CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 5, identity: 0.875

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
tcatgaaggcgttcacatggacgtctttttgttttgtgga	Protospacer
. * . **********************************

100. spacer 2.6|1251150|40|LS483336|CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 5, identity: 0.875

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
tcatggaggcgttcacatggacgtctttttgttttgtgga	Protospacer
. * . **********************************

101. spacer 2.6|1251150|40|LS483336|CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 5, identity: 0.875

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
tcatgaaggcgttcacatggacgtctttttgttttgtgga	Protospacer
. * . **********************************

102. spacer 2.9|1251350|41|LS483336|CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 5, identity: 0.878

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttgctaaaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
* .   ***********************************

103. spacer 2.9|1251350|41|LS483336|CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 5, identity: 0.878

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttgctaaaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
* .   ***********************************

104. spacer 2.9|1251350|41|LS483336|CRT matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 5, identity: 0.878

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttgctaaaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
* .   ***********************************

105. spacer 2.9|1251350|41|LS483336|CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 5, identity: 0.878

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttgctaaaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
* .   ***********************************

106. spacer 2.9|1251350|41|LS483336|CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 5, identity: 0.878

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttgctaaaatcgctatatcttatcaacaaaacaccaagaaa	Protospacer
* .   ***********************************

107. spacer 2.9|1251350|41|LS483336|CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 5, identity: 0.878

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttactaaaatcgctatatcttatcaacaaaacactaagaaa	Protospacer
* *   ****************************.******

108. spacer 2.10|1251417|40|LS483336|CRT matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 5, identity: 0.875

tgagac---ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
---gacctaagtctttacggtcagcaaacaatacgccacgttt	Protospacer
   ***   .***************.*****************

109. spacer 2.10|1251417|40|LS483336|CRT matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 5, identity: 0.875

tgagac---ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
---gacctaagtctttacggtcagcaaacaatacgccacgttt	Protospacer
   ***   .***************.*****************

110. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 5, identity: 0.853

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgtgtggagaa	Protospacer
********.***************** * * *.*

111. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 5, identity: 0.853

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgtgtggagaa	Protospacer
********.***************** * * *.*

112. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448514 (Streptococcus satellite phage Javan480, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
gggcgttcgtatggacgtctttttgttttgttcg	Protospacer
.*******..*********************  .

113. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448347 (Streptococcus satellite phage Javan171, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
gggcgttcgtatggacgtctttttgttttgttcg	Protospacer
.*******..*********************  .

114. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448521 (Streptococcus satellite phage Javan518, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
gggcgttcgtatggacgtctttttgttttgttcg	Protospacer
.*******..*********************  .

115. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

116. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

117. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

118. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

119. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

120. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

121. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

122. spacer 2.6|1251150|40|LS483336|CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 6, identity: 0.85

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
tcatgaaggcgttcgcatggacgtctttttgttttgtgga	Protospacer
. * . ********.*************************

123. spacer 2.6|1251150|40|LS483336|CRT matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 6, identity: 0.85

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
tcatgaaggcgttcgcatggacgtctttttgttttgtgga	Protospacer
. * . ********.*************************

124. spacer 2.9|1251350|41|LS483336|CRT matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 6, identity: 0.854

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttgctaaaatcgctatatcttatcaacaaaacaccaataaa	Protospacer
* .   ******************************* ***

125. spacer 2.9|1251350|41|LS483336|CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 6, identity: 0.854

tgagacaaatcgctatatcttatcaacaaaacaccaagaaa	CRISPR spacer
ttgctaaaatcgctatatcttatcaacaaaacaccaaaaaa	Protospacer
* .   *******************************.***

126. spacer 2.10|1251417|40|LS483336|CRT matches to MK448750 (Streptococcus phage Javan393, complete genome) position: , mismatch: 6, identity: 0.85

tgagac---ggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
---gacctaagtctttacggtcagcaaacaatacaccacgttt	Protospacer
   ***   .***************.********.********

127. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448514 (Streptococcus satellite phage Javan480, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
gggcgttcgtatggacgtctttttgttttgttcg	Protospacer
.*******..*********************  .

128. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448347 (Streptococcus satellite phage Javan171, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
gggcgttcgtatggacgtctttttgttttgttcg	Protospacer
.*******..*********************  .

129. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448521 (Streptococcus satellite phage Javan518, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
gggcgttcgtatggacgtctttttgttttgttcg	Protospacer
.*******..*********************  .

130. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

131. spacer 2.11|1251157|34|LS483336|PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

132. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

133. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

134. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448950 (Streptococcus phage Javan464, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

135. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448975 (Streptococcus phage Javan526, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

136. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448782 (Streptococcus phage Javan501, complete genome) position: , mismatch: 6, identity: 0.824

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttttgtggagaa	Protospacer
********.*************** * * * *.*

137. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 7, identity: 0.794

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgtggagtcat	Protospacer
********.*****************   ** .

138. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 7, identity: 0.794

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatgggcgtctttttgtgtggagat	Protospacer
********.*****.*********** * * *.

139. spacer 2.6|1251150|40|LS483336|CRT matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 7, identity: 0.825

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
tcatgaaagcgttcacacggacgtctttttgttttgtgga	Protospacer
. * . *.*********.**********************

140. spacer 2.10|1251417|40|LS483336|CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 7, identity: 0.825

tgagacggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
gaccaaggtctttacgatcggcgaacaatacgccacgttt	Protospacer
 .  * **********.**.********************

141. spacer 2.10|1251417|40|LS483336|CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 7, identity: 0.825

tgagacggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
gaccaaggtctttacgatcggcgaacaatacgccacgttt	Protospacer
 .  * **********.**.********************

142. spacer 2.10|1251417|40|LS483336|CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 7, identity: 0.825

tgagacggtctttacggtcagcgaacaatacgccacgttt	CRISPR spacer
gaccaaggtctttacgatcggcgaacaatacgccacgttt	Protospacer
 .  * **********.**.********************

143. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 7, identity: 0.794

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgtggagtcat	Protospacer
********.*****************   ** .

144. spacer 2.11|1251157|34|LS483336|PILER-CR matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 7, identity: 0.794

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatgggcgtctttttgtgtggagat	Protospacer
********.*****.*********** * * *.

145. spacer 2.6|1251150|40|LS483336|CRT matches to MK448511 (Streptococcus satellite phage Javan473, complete genome) position: , mismatch: 8, identity: 0.8

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
ccaaggaggcgttcatatggacgtctttttgttttgttcg	Protospacer
* *.. *********.*********************  .

146. spacer 2.6|1251150|40|LS483336|CRT matches to MK448661 (Streptococcus satellite phage Javan96, complete genome) position: , mismatch: 8, identity: 0.8

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
ccaaggaggcgttcgcatggacgtctttttgttttgttcg	Protospacer
* *.. ********.**********************  .

147. spacer 2.6|1251150|40|LS483336|CRT matches to MK448517 (Streptococcus satellite phage Javan495, complete genome) position: , mismatch: 8, identity: 0.8

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
ccaaggaggcgttcatatggacgtctttttgttttgttcg	Protospacer
* *.. *********.*********************  .

148. spacer 2.6|1251150|40|LS483336|CRT matches to MK448323 (Streptococcus satellite phage Javan120, complete genome) position: , mismatch: 9, identity: 0.775

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
tcaaggaggcgttcgcatggacgtctttttgttttgttcg	Protospacer
. *.. ********.**********************  .

149. spacer 2.6|1251150|40|LS483336|CRT matches to MK448514 (Streptococcus satellite phage Javan480, complete genome) position: , mismatch: 10, identity: 0.75

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
ccaagggggcgttcgtatggacgtctttttgttttgttcg	Protospacer
* *.. .*******..*********************  .

150. spacer 2.6|1251150|40|LS483336|CRT matches to MK448347 (Streptococcus satellite phage Javan171, complete genome) position: , mismatch: 10, identity: 0.75

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
ccaagggggcgttcgtatggacgtctttttgttttgttcg	Protospacer
* *.. .*******..*********************  .

151. spacer 2.6|1251150|40|LS483336|CRT matches to MK448521 (Streptococcus satellite phage Javan518, complete genome) position: , mismatch: 10, identity: 0.75

cgagacaggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
ccaagggggcgttcgtatggacgtctttttgttttgttcg	Protospacer
* *.. .*******..*********************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36565 : 48927

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF18694.1\|36565_40339_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.1e-40	26.8
SQF18695.1\|40499_41954_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.7e-54	32.3
SQF18696.1\|41981_43004_+	phosphoribosylaminoimidazole synthetase	R9TMC7	Synechococcus_phage	3.1e-63	42.1
SQF18697.1\|43171_43726_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.2e-25	36.1
SQF18698.1\|43909_45457_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	E3SNU8	Prochlorococcus_phage	2.6e-45	52.9
SQF18699.1\|45515_46640_-	bacterial SH3 domain protein	A0A1S5PRY3	Streptococcus_phage	7.7e-07	33.1
SQF18700.1\|46802_48158_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
SQF18701.1\|48315_48927_+	phosphoribosyl carboxyaminoimidazole mutase	A0A2P0VNU7	Tetraselmis_virus	6.8e-18	42.3

DBSCAN-SWA_2

183952 : 239067

Bacillus_phage(55.56%)

transposase,tRNA,integrase

attL 174420:174435|attR 233854:233869

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
174420:174435	attL	NA	NA	NA	NA
SQF18831.1\|183952_184777_-\|integrase	integrase core domain protein	A0A1P8CWQ3	Bacillus_phage	3.8e-48	40.9
SQF18832.1\|184809_185103_-\|transposase	transposase	NA	NA	NA	NA
SQF18833.1\|185180_186209_-	membrane protein	NA	NA	NA	NA
SQF18834.1\|186205_186493_-	membrane protein	NA	NA	NA	NA
SQF18835.1\|186716_187589_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA
SQF18836.1\|187943_188696_-\|transposase	transposase, IS861	A0A1B1P773	Bacillus_phage	1.9e-54	47.9
SQF18837.1\|188716_189241_-\|transposase	transposase	NA	NA	NA	NA
SQF18838.1\|189325_190189_-	membrane protein	NA	NA	NA	NA
SQF18839.1\|190406_191549_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.9e-86	43.9
SQF18840.1\|191766_192078_+	helper of Tim protein 13	NA	NA	NA	NA
SQF18841.1\|192081_192621_+	biotin transporter	NA	NA	NA	NA
SQF18842.1\|192760_193540_+	metal-dependent hydrolase	NA	NA	NA	NA
SQF18843.1\|193539_194055_+\|tRNA	tRNA-specific adenosine deaminase	NA	NA	NA	NA
SQF18844.1\|194668_195889_-	S-layer protein	NA	NA	NA	NA
SQF18845.1\|196300_197005_+	exotoxin G	NA	NA	NA	NA
SQF18846.1\|197461_198811_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
SQF18847.1\|200972_201104_+	Uncharacterised protein	NA	NA	NA	NA
SQF18848.1\|201355_202027_+	rhomboid family protein	NA	NA	NA	NA
SQF18849.1\|202125_203025_-	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	9.6e-77	52.2
SQF18850.1\|203057_204074_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
SQF18851.1\|204134_204236_-	hupothetical protein	NA	NA	NA	NA
SQF18852.1\|204240_205374_-\|transposase	transposase	NA	NA	NA	NA
SQF18853.1\|205697_206147_+	marR family protein	NA	NA	NA	NA
SQF18854.1\|206139_207846_+	ABC transporter	W8CYL7	Bacillus_phage	1.4e-36	27.1
SQF18855.1\|207848_209633_+	multidrug ABC transporter permease	W8CYL7	Bacillus_phage	3.3e-44	28.1
SQF18856.1\|209750_210518_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQF18857.1\|210627_211074_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	A0A1P8BLJ0	Lactococcus_phage	4.5e-35	52.8
SQF18858.1\|211154_212516_+	DNA repair protein RadA	NA	NA	NA	NA
SQF18859.1\|212704_213202_+	carbonate dehydratase	NA	NA	NA	NA
SQF18860.1\|213332_214043_+	HTH DNA-binding protein	NA	NA	NA	NA
SQF18861.1\|214224_215670_+\|tRNA	glutamyl-tRNA synthetase	A0A2K9L481	Tupanvirus	6.8e-08	31.2
SQF18862.1\|216064_217411_+	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	NA	NA	NA	NA
SQF18863.1\|217407_218691_+	histidine kinase	NA	NA	NA	NA
SQF18864.1\|218697_219435_+	response regulator	NA	NA	NA	NA
SQF18865.1\|219974_220334_+	ribonuclease P protein component	NA	NA	NA	NA
SQF18866.1\|220317_221127_+	membrane protein oxaA 1 precursor	NA	NA	NA	NA
SQF18867.1\|221138_222053_+	jag protein	NA	NA	NA	NA
SQF18868.1\|222367_222502_+	LSU ribosomal protein L34p	NA	NA	NA	NA
SQF18869.1\|222775_223480_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
SQF18870.1\|223528_224848_+	sn-glycerol-3-phosphate-binding periplasmic protein ugpB	NA	NA	NA	NA
SQF18871.1\|224875_225838_+	N-acetylneuraminate transport system permease	NA	NA	NA	NA
SQF18872.1\|225850_226681_+	N-acetylneuraminate transport system permease	NA	NA	NA	NA
SQF18873.1\|226837_227500_+	membrane protein	NA	NA	NA	NA
SQF18874.1\|227511_228426_+	N-acetylneuraminate lyase	NA	NA	NA	NA
SQF18875.1\|228447_229386_+	ROK family protein	NA	NA	NA	NA
SQF18876.1\|229496_230327_-	RpiR family transcriptional regulator	NA	NA	NA	NA
SQF18877.1\|230611_231403_+	TatD family hydrolase	NA	NA	NA	NA
SQF18878.1\|231395_231965_+	ribonuclease M5	NA	NA	NA	NA
SQF18879.1\|232078_232951_+	dimethyladenosine transferase	NA	NA	NA	NA
SQF18880.1\|233374_234247_+	ribosome-associated GTPase	NA	NA	NA	NA
233854:233869	attR	NA	NA	NA	NA
SQF18881.1\|234256_234919_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
SQF18882.1\|234911_235544_+	thiamine pyrophosphokinase	NA	NA	NA	NA
SQF18883.1\|235545_236817_+	RmuC family DNA recombination protein	NA	NA	NA	NA
SQF18884.1\|236806_237745_+	CMP-binding factor	NA	NA	NA	NA
SQF18885.1\|238023_239067_+\|transposase	transposase	H7BW61	unidentified_phage	5.4e-31	34.6

DBSCAN-SWA_3

343065 : 349099

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF18981.1\|343065_343701_+	thymidylate kinase	M1PSC7	Streptococcus_phage	2.7e-65	63.4
SQF18982.1\|343718_344594_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.5e-71	46.9
SQF18983.1\|344612_344852_+	Tpl protein	NA	NA	NA	NA
SQF18984.1\|345256_345580_+	DNA replication initiation control protein	M1PFV3	Streptococcus_phage	1.3e-28	59.4
SQF18985.1\|345584_346448_+	corrin/porphyrin methyltransferase	M1PLC5	Streptococcus_phage	1.7e-115	75.0
SQF18986.1\|346474_346867_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF18987.1\|346913_347543_-	copper homeostasis protein	NA	NA	NA	NA
SQF18988.1\|347841_348198_+	arsenate reductase	M1PLC0	Streptococcus_phage	6.3e-40	65.8
SQF18989.1\|348271_349099_-	3'-exo-deoxyribonuclease	M1PSC0	Streptococcus_phage	4.5e-129	79.3

DBSCAN-SWA_4

357436 : 399916

Mycobacterium_phage(15.38%)

bacteriocin,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF18993.1\|357436_359434_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SHR2	Klosneuvirus	3.9e-86	35.0
SQF18994.1\|359927_360941_+	ribonucleotide-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	5.5e-97	52.7
SQF18995.1\|360944_361433_+	nrdI protein	R4JF54	Bacillus_phage	1.0e-11	37.5
SQF18996.1\|361399_363580_+	ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	6.6e-172	43.3
SQF18997.1\|363785_364538_-	ADP-ribosyltransferase	NA	NA	NA	NA
SQF18998.1\|365004_365355_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF18999.1\|365784_366210_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF19000.1\|366478_367042_-\|transposase	transposase DDE domain protein	A0A1X9I5T2	Streptococcus_phage	2.7e-85	91.2
SQF19001.1\|367019_367679_-\|transposase	transposase	A0A1X9I5T2	Streptococcus_phage	1.9e-114	90.8
SQF19002.1\|368146_368572_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF19003.1\|368688_369096_+	Uncharacterised protein	NA	NA	NA	NA
SQF19004.1\|369225_369477_+	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF19005.1\|369570_370302_-	phage protein	NA	NA	NA	NA
SQF19006.1\|370660_370897_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA
SQF19007.1\|370889_371588_+	3-ketoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	7.8e-10	24.8
SQF19008.1\|371663_372623_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
SQF19009.1\|372955_374293_+	phosphoglycerate transporter protein	NA	NA	NA	NA
SQF19010.1\|374464_375847_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	A0A2K9L4K9	Tupanvirus	3.8e-32	36.4
SQF19011.1\|375877_376432_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA
SQF19012.1\|376431_376683_+	membrane protein	NA	NA	NA	NA
SQF19013.1\|376702_377398_+	MTA/SAH nucleosidase	NA	NA	NA	NA
SQF19014.1\|377548_377890_+	Uncharacterised protein	NA	NA	NA	NA
SQF19015.1\|377988_378636_-	metalloregulator ScaR	NA	NA	NA	NA
SQF19016.1\|378781_379714_+	manganese-binding protein	NA	NA	NA	NA
SQF19017.1\|379777_380503_+	manganese transporter ATP-binding protein	A0A1V0SE00	Indivirus	2.4e-17	32.6
SQF19018.1\|380503_381358_+	ABC 3 transport family protein	NA	NA	NA	NA
SQF19019.1\|381505_382312_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.5e-20	36.6
SQF19020.1\|382528_384934_+	cell division protein FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	51.7
SQF19021.1\|385003_385357_-	integral membrane protein	NA	NA	NA	NA
SQF19022.1\|385600_386026_+	50S ribosomal protein L11	NA	NA	NA	NA
SQF19023.1\|386131_386821_+	50S ribosomal protein L1	NA	NA	NA	NA
SQF19024.1\|387142_387871_+	uridylate kinase	NA	NA	NA	NA
SQF19025.1\|387899_388457_+	ribosome recycling factor	NA	NA	NA	NA
SQF19026.1\|388565_389423_+	s1 RNA binding domain	NA	NA	NA	NA
SQF19027.1\|389495_390005_+	methionine sulfoxide reductase A	NA	NA	NA	NA
SQF19028.1\|390001_390217_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQF19029.1\|390372_391554_+	lysM domain protein	A0A0E3XB61	Gordonia_phage	5.6e-16	40.5
SQF19030.1\|391869_393642_+	myosin-cross-reactive antigen	NA	NA	NA	NA
SQF19031.1\|393800_394853_+	phosphate starvation-induced protein	W8D063	Erwinia_phage	1.2e-46	50.0
SQF19032.1\|394898_395474_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA
SQF19033.1\|395632_396130_+\|protease	metalloprotease	NA	NA	NA	NA
SQF19034.1\|396110_396518_+	diacylglycerol kinase	NA	NA	NA	NA
SQF19035.1\|396637_397534_+	GTP-binding protein Era	NA	NA	NA	NA
SQF19036.1\|397553_398030_+	phosphohydrolase	NA	NA	NA	NA
SQF19037.1\|398334_398589_-	Uncharacterised protein	NA	NA	NA	NA
SQF19038.1\|398986_399232_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	NA	NA	NA	NA
SQF19039.1\|399246_399429_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	NA	NA	NA	NA
SQF19040.1\|399766_399916_-\|transposase	IS1191 transposase	NA	NA	NA	NA

DBSCAN-SWA_5

501222 : 565014

Streptococcus_phage(50.0%)

bacteriocin,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF19139.1\|501222_502356_+\|transposase	transposase	NA	NA	NA	NA
SQF19140.1\|502360_502489_+	exfoliative toxin	NA	NA	NA	NA
SQF19141.1\|502650_505332_+	cation transporting ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	1.1e-67	27.8
SQF19142.1\|505415_506411_-	transcriptional regulator	NA	NA	NA	NA
SQF19144.1\|506474_508382_-	oligohyaluronate lyase	NA	NA	NA	NA
SQF19146.1\|508468_509290_-	PTS system N-acetylgalactosamine-specific transporter subunit IID	NA	NA	NA	NA
SQF19148.1\|509276_510059_-	PTS system N-acetylgalactosamine-specific transporter subunit IIC	NA	NA	NA	NA
SQF19151.1\|510077_510566_-	PTS system protein	NA	NA	NA	NA
SQF19153.1\|510601_511801_-	unsaturated glucuronyl hydrolase	NA	NA	NA	NA
SQF19154.1\|511800_512238_-	PTS system N-acetylgalactosamine-specific transporter subunit IIA	NA	NA	NA	NA
SQF19156.1\|512571_513366_+	gluconate 5-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.3e-18	30.9
SQF19158.1\|513390_514032_+	galactose-6-phosphate isomerase	NA	NA	NA	NA
SQF19160.1\|514060_515062_+	2-dehydro-3-deoxygluconokinase	NA	NA	NA	NA
SQF19162.1\|515066_515702_+	ketohydroxyglutarate aldolase	NA	NA	NA	NA
SQF19164.1\|515998_516649_+	HAD family hydrolase	A0A1D8KNV9	Synechococcus_phage	7.0e-13	29.2
SQF19166.1\|517346_518471_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
SQF19168.1\|518657_519638_+	peptide chain release factor 2	NA	NA	NA	NA
SQF19170.1\|519656_520349_+	cell division ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-30	35.6
SQF19172.1\|520341_521271_+	cell division protein FtsX	NA	NA	NA	NA
SQF19174.1\|521580_522216_-	Hydroxyacylglutathione hydrolase	A0A1X9I5D3	Streptococcus_phage	1.9e-79	63.3
SQF19176.1\|522446_523211_+	acetoin reductase	NA	NA	NA	NA
SQF19178.1\|523407_524541_+\|transposase	transposase	NA	NA	NA	NA
SQF19181.1\|524545_524635_+	exfoliative toxin	NA	NA	NA	NA
SQF19183.1\|524686_527146_+	helicase DinG	A0A1X9I5C8	Streptococcus_phage	9.6e-204	48.1
SQF19185.1\|527481_528675_+	aspartate aminotransferase	NA	NA	NA	NA
SQF19187.1\|528695_530042_+\|tRNA	asparaginyl-tRNA synthetase	A0A2P1EMB4	Moumouvirus	1.1e-55	30.8
SQF19189.1\|530456_531347_+	P-loop ATPase protein family protein	A0A0R8VB27	Thermobifida_phage	8.8e-06	29.8
SQF19191.1\|531343_532321_+	transporter	A1IMD5	Streptococcus_phage	2.1e-138	74.2
SQF19193.1\|532317_533229_+	sporulation Regulator WhiA C terminal domain-containing protein	Q7AWZ3	Streptococcus_phage	1.3e-105	64.7
SQF19195.1\|533361_534759_+	dipeptidase	NA	NA	NA	NA
SQF19197.1\|534910_536458_+	high-affinity zinc uptake system protein	NA	NA	NA	NA
SQF19199.1\|536605_537328_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQF19201.1\|537347_538547_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA
SQF19203.1\|538643_538904_-	50S ribosomal protein L31	NA	NA	NA	NA
SQF19205.1\|539018_539960_-	DHH family protein	NA	NA	NA	NA
SQF19207.1\|540353_540803_+	flavodoxin	NA	NA	NA	NA
SQF19209.1\|540977_541262_+	chorismate mutase	NA	NA	NA	NA
SQF19211.1\|541254_542517_+	chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	6.4e-95	51.3
SQF19213.1\|542631_542979_+	50S ribosomal protein L19	NA	NA	NA	NA
SQF19216.1\|543033_544113_-\|transposase	transposase	H7BW61	unidentified_phage	5.6e-31	34.6
SQF19218.1\|545079_545649_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA
SQF19220.1\|545649_547602_+	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	8.9e-144	46.3
SQF19222.1\|547969_549694_+	septation ring formation regulator	NA	NA	NA	NA
SQF19224.1\|549825_550284_-	hypothetical cytosolic protein	W6LLD2	Streptococcus_phage	1.8e-18	39.1
SQF19226.1\|550516_551824_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	1.2e-240	96.6
SQF19228.1\|552297_552987_-\|transposase	transposase	A0A1X9I619	Streptococcus_phage	1.1e-96	80.3
SQF19231.1\|553595_555137_-	MgaA-like transcriptional regulator	NA	NA	NA	NA
SQF19233.1\|555608_561761_+	putative extracellular matrix binding protein Epf	NA	NA	NA	NA
SQF19234.1\|562625_562787_+\|bacteriocin	bacteriocin protoxin, streptolysin S family protein	NA	NA	NA	NA
SQF19236.1\|563008_563959_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA
SQF19238.1\|563955_565014_+\|bacteriocin	bacteriocin biosynthesis cyclodehydratase	NA	NA	NA	NA

DBSCAN-SWA_6

628281 : 638884

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF19327.1\|628281_630492_-	phosphoglycerol transferase	W6LM83	Streptococcus_phage	2.9e-268	69.1
SQF19328.1\|630599_631763_+	SAM-dependent methyltransferase	W6LLI2	Streptococcus_phage	2.6e-143	65.1
SQF19329.1\|631759_632446_+	3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	7.0e-88	68.9
SQF19330.1\|632539_633706_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-34	32.8
SQF19331.1\|633766_634108_+	hypothetical cytosolic protein	A0A1X9I5Y8	Streptococcus_phage	5.9e-19	40.2
SQF19332.1\|634328_635681_+	glutathione reductase	A0A2K5B2C5	Erysipelothrix_phage	3.1e-31	24.4
SQF19333.1\|635768_637037_-	folylpolyglutamate synthase	NA	NA	NA	NA
SQF19334.1\|637066_637507_-	membrane protein	NA	NA	NA	NA
SQF19335.1\|637741_638884_+	aminotransferase class-V family protein	A0A1X6WFP1	Pacmanvirus	8.0e-28	29.1

DBSCAN-SWA_7

645521 : 699844

Bacillus_phage(25.0%)

head,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF19344.1\|645521_646655_+\|transposase	transposase	NA	NA	NA	NA
SQF19345.1\|646944_647466_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA
SQF19346.1\|647481_648741_+	uracil permease	Q9KX94	Enterobacteria_phage	7.6e-64	37.8
SQF19347.1\|648750_649737_+	aspartate carbamoyltransferase catalytic subunit	M1HGA5	Paramecium_bursaria_Chlorella_virus	3.2e-25	32.6
SQF19348.1\|649780_650863_+	carbamoyl phosphate synthase small subunit	R4TGJ8	Halovirus	4.7e-62	36.9
SQF19349.1\|651108_654285_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA
SQF19350.1\|654491_655763_+	RND family efflux transporter MFP subunit	NA	NA	NA	NA
SQF19351.1\|655762_656473_+	bacitracin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-36	42.5
SQF19352.1\|656484_657705_+	permease family protein	NA	NA	NA	NA
SQF19353.1\|657958_659692_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
SQF19354.1\|659818_660091_+	30S ribosomal protein S16	NA	NA	NA	NA
SQF19355.1\|660100_660340_+	RNA binding protein	NA	NA	NA	NA
SQF19356.1\|661271_664298_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA
SQF19357.1\|664317_664719_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
SQF19358.1\|664898_665774_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA
SQF19359.1\|665909_666431_+	transcriptional regulator, TetR family	NA	NA	NA	NA
SQF19360.1\|666645_667164_+	16S rRNA-processing protein	NA	NA	NA	NA
SQF19361.1\|667153_667885_+\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
SQF19362.1\|667884_668877_+	thioredoxin reductase	Q9JRK7	Streptococcus_phage	8.2e-29	54.9
SQF19363.1\|669055_670114_+	regulatory protein	NA	NA	NA	NA
SQF19364.1\|670126_671050_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQF19365.1\|671350_672019_+	deoR-like helix-turn-helix domain-containing protein	A0A077SK06	Escherichia_phage	4.8e-17	32.7
SQF19366.1\|672015_672927_+	1-phosphofructokinase	NA	NA	NA	NA
SQF19367.1\|672923_674870_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA
SQF19368.1\|674968_675562_+	N-acetylmuramidase	A0A249Y0X5	Enterococcus_phage	1.0e-10	33.1
SQF19369.1\|675713_676421_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q332B8	Clostridium_botulinum_C_phage	1.9e-11	36.4
SQF19370.1\|676477_676696_-\|transposase	degenerate transposase	A0A1B1P773	Bacillus_phage	2.7e-09	55.9
SQF19371.1\|677377_678403_-\|protease	igG-degrading protease	NA	NA	NA	NA
SQF19372.1\|678905_679082_+	nucleoside diphosphate kinase	NA	NA	NA	NA
SQF19373.1\|679309_679690_+\|transposase	transposase	NA	NA	NA	NA
SQF19374.1\|679689_680538_+	degV family protein	NA	NA	NA	NA
SQF19375.1\|680662_681871_+\|head	poly A polymerase head domain-containing protein	H7BUW3	unidentified_phage	4.8e-39	45.5
SQF19376.1\|681867_683745_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.9e-63	31.3
SQF19377.1\|684636_685047_+	polypeptide deformylase family protein	E3SLL2	Synechococcus_phage	6.9e-06	30.6
SQF19378.1\|685127_687140_-	5'-nucleotidase	NA	NA	NA	NA
SQF19379.1\|687359_688010_+	GTP pyrophosphokinase	NA	NA	NA	NA
SQF19380.1\|688012_688681_+	two-component response regulator	W8CYM9	Bacillus_phage	2.3e-19	28.8
SQF19381.1\|688689_689922_+	two component system histidine kinase	NA	NA	NA	NA
SQF19382.1\|690214_691093_+	mevalonate kinase	NA	NA	NA	NA
SQF19383.1\|691074_692019_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
SQF19384.1\|692011_693019_+	phosphomevalonate kinase	NA	NA	NA	NA
SQF19385.1\|693011_694001_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA
SQF19386.1\|694230_695508_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
SQF19387.1\|695494_696670_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
SQF19388.1\|696878_697718_+	thymidylate synthase	U5J9N5	Bacillus_phage	1.7e-83	53.2
SQF19389.1\|697797_698295_+	dihydrofolate reductase	W5QU76	Bacillus_phage	8.6e-11	34.4
SQF19390.1\|698314_698485_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF19391.1\|698614_699844_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.0e-137	60.5

DBSCAN-SWA_8

999765 : 1028102

Staphylococcus_prophage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF19682.1\|999765_1000017_+\|transposase	transposase	NA	NA	NA	NA
SQF19683.1\|999958_1000546_+\|transposase	truncated transposase	Q9MBM9	Staphylococcus_prophage	8.3e-29	40.8
SQF19684.1\|1001059_1002043_-	alpha/beta fold family hydrolase	NA	NA	NA	NA
SQF19685.1\|1002073_1003324_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA
SQF19686.1\|1003316_1003556_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
SQF19687.1\|1003573_1004830_-	Protein dltB	NA	NA	NA	NA
SQF19688.1\|1004826_1006365_-	D-alanine--poly(phosphoribitol) ligase subunit 1	A0A2K9KZV5	Tupanvirus	6.5e-41	28.2
SQF19689.1\|1006376_1006520_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA
SQF19690.1\|1006783_1008775_-	excinuclease ABC subunit B	NA	NA	NA	NA
SQF19691.1\|1008967_1011142_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA
SQF19692.1\|1011141_1011882_+	glutamine transport ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	1.2e-35	42.1
SQF19693.1\|1012029_1012182_-	Uncharacterised protein	NA	NA	NA	NA
SQF19694.1\|1012178_1013558_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA
SQF19695.1\|1013735_1014185_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA
SQF19696.1\|1014181_1014517_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA
SQF19697.1\|1014519_1014831_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA
SQF19698.1\|1014853_1016848_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA
SQF19699.1\|1016953_1018048_-	outer surface protein	NA	NA	NA	NA
SQF19700.1\|1018056_1019457_-	beta-glucosidase	NA	NA	NA	NA
SQF19701.1\|1019732_1020866_+\|transposase	transposase	NA	NA	NA	NA
SQF19702.1\|1020904_1021702_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA
SQF19703.1\|1021706_1021865_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQF19704.1\|1021933_1023247_-	GTPase ObgE	NA	NA	NA	NA
SQF19705.1\|1023303_1023432_-	membrane protein	NA	NA	NA	NA
SQF19706.1\|1023672_1024197_+\|transposase	transposase	NA	NA	NA	NA
SQF19707.1\|1024217_1024970_+\|transposase	transposase, IS861	A0A1B1P773	Bacillus_phage	1.9e-54	47.9
SQF19708.1\|1025324_1026197_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA
SQF19709.1\|1026420_1027731_+	membrane protein	NA	NA	NA	NA
SQF19710.1\|1027808_1028102_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1106342 : 1192871

124

Streptococcus_phage(83.65%)

portal,terminase,tail,integrase,capsid

attL 1109783:1109802|attR 1190256:1190275

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF19782.1\|1106342_1107278_+	dihydroorotate dehydrogenase 1A	A0A1V0SH91	Hokovirus	7.9e-66	45.1
SQF19783.1\|1107332_1107506_-	membrane protein	NA	NA	NA	NA
SQF19784.1\|1107577_1109440_-	putative heavy metal-transporting ATPase	E4ZFI9	Streptococcus_phage	9.2e-90	34.1
1109783:1109802	attL	NA	NA	NA	NA
SQF19785.1\|1109972_1110155_-	paratox	A3F673	Streptococcus_phage	2.0e-21	81.7
SQF19786.1\|1110394_1111153_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA
SQF19787.1\|1111263_1111971_+	exotoxin type C	A0A097PAT7	Streptococcus_pyogenes_phage	3.9e-09	27.1
SQF19788.1\|1112039_1112792_-	phage-associated cell wall hydrolase	A3F665	Streptococcus_phage	2.1e-141	97.2
SQF19789.1\|1112793_1113126_-	N-acetylmuramoyl-L-alanine amidase	A3F664	Streptococcus_phage	2.8e-50	98.2
SQF19790.1\|1113138_1113459_-	Uncharacterised protein	A3F663	Streptococcus_phage	1.2e-50	99.1
SQF19791.1\|1113469_1114081_-	phage protein	Q938J7	Temperate_phage	4.5e-86	94.6
SQF19792.1\|1114083_1114515_-	phage protein	Q938J8	Temperate_phage	1.1e-73	100.0
SQF19793.1\|1114526_1116410_-	phage protein	Q938J9	Temperate_phage	2.0e-249	95.9
SQF19794.1\|1116424_1117438_-	hyaluronoglucosaminidase	Q938K0	Temperate_phage	2.0e-184	99.7
SQF19795.1\|1117434_1119414_-	phage protein	A7J2A7	Streptococcus_phage	0.0e+00	92.8
SQF19796.1\|1119423_1120266_-	phage protein	A7J2A6	Streptococcus_phage	2.2e-160	100.0
SQF19797.1\|1120277_1124435_-\|tail	phage minor tail protein	A7J2A5	Streptococcus_phage	5.0e-237	97.7
SQF19798.1\|1124449_1124683_-	phage protein	A7J2A4	Streptococcus_phage	4.4e-34	100.0
SQF19799.1\|1124757_1125213_-	phage protein	A7J2A3	Streptococcus_phage	7.7e-75	98.7
SQF19800.1\|1125266_1125866_-\|tail	phage major tail protein	A7J2A2	Streptococcus_phage	1.2e-86	94.3
SQF19801.1\|1125877_1126237_-	phage protein	A7J2A1	Streptococcus_phage	1.8e-58	98.3
SQF19802.1\|1126240_1126585_-	phage protein	A7J2A0	Streptococcus_phage	1.4e-55	98.2
SQF19803.1\|1126581_1126860_-	phage protein	A7J299	Streptococcus_phage	4.2e-47	98.9
SQF19804.1\|1126870_1127227_-	phage protein	A7J298	Streptococcus_phage	1.7e-56	96.6
SQF19805.1\|1127238_1128126_-	phage protein	A7J297	Streptococcus_phage	2.0e-159	99.0
SQF19806.1\|1128138_1128708_-	phage protein	A7J296	Streptococcus_phage	6.3e-74	92.1
SQF19807.1\|1128954_1129224_-	phage protein	Q938K9	Temperate_phage	2.8e-32	84.1
SQF19808.1\|1129226_1129343_-	phage membrane protein	A7J294	Streptococcus_phage	3.5e-08	97.4
SQF19809.1\|1129419_1129509_-	Uncharacterised protein	NA	NA	NA	NA
SQF19810.1\|1129451_1129634_-	phage protein	J7KBZ4	Streptococcus_phage	1.9e-16	74.6
SQF19811.1\|1129854_1130610_+	exotoxin type A	A0A097PAT7	Streptococcus_pyogenes_phage	2.2e-143	100.0
SQF19812.1\|1130731_1131949_-	N-acetylmuramoyl-L-alanine amidase	A0A1P8VVM5	Streptococcus_phage	2.6e-162	59.5
SQF19813.1\|1131942_1132059_-	phage membrane protein	A7J2B4	Streptococcus_phage	7.0e-09	97.1
SQF19814.1\|1132067_1132295_-	phage protein	A7J2B3	Streptococcus_phage	2.0e-31	100.0
SQF19815.1\|1132291_1132564_-	phage membrane protein	A7J2B2	Streptococcus_phage	5.5e-36	91.0
SQF19816.1\|1132575_1133208_-	phage protein	Q938J7	Temperate_phage	2.6e-44	50.0
SQF19817.1\|1133210_1133639_-	phage protein	Q938J8	Temperate_phage	8.1e-58	84.3
SQF19818.1\|1133650_1135555_-	Phage infection protein	Q938J9	Temperate_phage	1.1e-210	83.7
SQF19819.1\|1135564_1136572_-	hyaluronoglucosaminidase	Q938K0	Temperate_phage	9.9e-115	64.9
SQF19820.1\|1136568_1138620_-	phage protein	A3F656	Streptococcus_phage	0.0e+00	84.6
SQF19821.1\|1138616_1139387_-\|tail	phage tail protein	A3F655	Streptococcus_phage	2.1e-128	87.5
SQF19822.1\|1139399_1143500_-\|tail	tail protein	A3F654	Streptococcus_phage	0.0e+00	66.3
SQF19823.1\|1143725_1144028_-	Uncharacterised protein	A3F652	Streptococcus_phage	1.8e-48	96.0
SQF19824.1\|1144120_1144705_-\|tail	major tail protein - phage associated	A3F651	Streptococcus_phage	3.1e-92	90.2
SQF19825.1\|1144716_1145097_-	Uncharacterised protein	A3F650	Streptococcus_phage	7.4e-63	99.2
SQF19826.1\|1145089_1145488_-	Uncharacterised protein	A3F649	Streptococcus_phage	2.9e-70	100.0
SQF19827.1\|1145489_1145852_-	Uncharacterised protein	A3F648	Streptococcus_phage	1.1e-60	97.5
SQF19828.1\|1145844_1146153_-	Uncharacterised protein	A3F647	Streptococcus_phage	1.2e-47	99.0
SQF19829.1\|1146152_1146326_-	Uncharacterised protein	A3F646	Streptococcus_phage	6.4e-22	94.7
SQF19830.1\|1146339_1147473_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A3F645	Streptococcus_phage	3.2e-202	96.8
SQF19831.1\|1147489_1148296_-	scaffolding protein	A3F644	Streptococcus_phage	6.0e-147	97.8
SQF19832.1\|1148276_1149464_-\|portal	HK97 family phage portal protein	A3F643	Streptococcus_phage	5.6e-218	96.2
SQF19833.1\|1149616_1149829_-	Uncharacterised protein	A3F642	Streptococcus_phage	1.4e-34	97.1
SQF19834.1\|1149831_1151562_-\|terminase	putative phage terminase, large subunit	A3F641	Streptococcus_phage	0.0e+00	97.0
SQF19835.1\|1151574_1151892_-	Uncharacterised protein	A3F640	Streptococcus_phage	3.9e-49	99.0
SQF19836.1\|1152032_1152338_-	HNH endonuclease	A3F639	Streptococcus_phage	3.8e-54	96.0
SQF19837.1\|1152330_1152717_-	Uncharacterised protein	A3F638	Streptococcus_phage	1.4e-64	93.0
SQF19838.1\|1152742_1152946_-	Uncharacterised protein	NA	NA	NA	NA
SQF19839.1\|1153003_1153297_-	Uncharacterised protein	NA	NA	NA	NA
SQF19840.1\|1153450_1154026_-	phage associated recombinase	A3F636	Streptococcus_phage	7.4e-107	99.5
SQF19841.1\|1154185_1154587_-	phage 31 late promoter transcriptional activator	A3F635	Streptococcus_phage	2.7e-71	100.0
SQF19842.1\|1154601_1155429_-	B-cell receptor associated protein-like protein	A3F634	Streptococcus_phage	1.3e-117	100.0
SQF19843.1\|1155431_1155770_-	immunity repressor protein - phage associated	A3F633	Streptococcus_phage	1.1e-54	92.9
SQF19844.1\|1155766_1156048_-	Uncharacterised protein	A3F632	Streptococcus_phage	4.5e-33	92.2
SQF19845.1\|1156062_1156455_-	single strand binding protein	A0A1P8VVS8	Streptococcus_phage	6.9e-48	70.3
SQF19846.1\|1156451_1156673_-	Uncharacterised protein	NA	NA	NA	NA
SQF19847.1\|1156669_1157155_-	phage protein	A0A1S5S9L5	Streptococcus_phage	5.6e-23	41.4
SQF19848.1\|1157159_1157804_-	phage protein	L0P368	Streptococcus_phage	4.6e-81	65.7
SQF19849.1\|1157793_1158063_-	phage membrane protein	A7J287	Streptococcus_phage	1.4e-28	80.9
SQF19850.1\|1158059_1158230_-	phage protein	Q938M0	Temperate_phage	2.7e-09	55.4
SQF19851.1\|1158226_1158670_-	phage protein	A0A1C9LX52	Streptococcus_phage	1.6e-32	55.0
SQF19852.1\|1158686_1158812_-	phage protein	NA	NA	NA	NA
SQF19853.1\|1158825_1159053_-	phage protein	C5J991	Streptococcus_phage	9.3e-13	49.3
SQF19854.1\|1159052_1159865_-	phage DNA replication protein	A0A1P8VVV9	Streptococcus_phage	6.8e-122	77.6
SQF19855.1\|1159864_1160626_-	dnaD and phage-associated domain protein	A0A220GFI5	Streptococcus_phage	9.1e-28	56.1
SQF19856.1\|1160618_1161959_-	DNA polymerase III delta prime subunit	A0A1P8VVQ6	Streptococcus_phage	7.1e-209	84.7
SQF19857.1\|1161945_1162134_-	Uncharacterised protein	NA	NA	NA	NA
SQF19858.1\|1162254_1162446_-	Uncharacterised protein	NA	NA	NA	NA
SQF19859.1\|1162538_1162796_-	phage protein	A3F618	Streptococcus_phage	5.4e-41	98.8
SQF19860.1\|1162869_1163589_-	antirepressor - phage associated	A3F617	Streptococcus_phage	4.6e-106	78.7
SQF19861.1\|1163640_1164141_+	Uncharacterised protein	NA	NA	NA	NA
SQF19862.1\|1164260_1164395_-	Uncharacterised protein	A3F616	Streptococcus_phage	2.4e-16	95.5
SQF19863.1\|1164468_1164681_-	phage protein	M1Q1B4	Streptococcus_phage	1.7e-13	52.9
SQF19864.1\|1164715_1164991_-	Uncharacterised protein	NA	NA	NA	NA
SQF19865.1\|1165279_1165630_+	repressor - phage associated	A0A1S5SAD3	Streptococcus_phage	1.2e-35	63.5
SQF19866.1\|1165633_1166026_+	phage protein	A3F612	Streptococcus_phage	2.2e-38	68.7
SQF19867.1\|1166036_1166777_+	phage protein	A3F611	Streptococcus_phage	1.6e-130	100.0
SQF19868.1\|1167087_1168284_+\|integrase	phage associated integrase	A3F610	Streptococcus_phage	3.9e-227	99.0
SQF19869.1\|1168456_1169902_-	phage protein	A7J293	Streptococcus_phage	6.8e-258	92.9
SQF19870.1\|1169861_1171394_-\|portal	phage portal protein	A7J292	Streptococcus_phage	3.3e-287	98.4
SQF19871.1\|1171409_1172687_-\|terminase	terminase large subunit	A7J291	Streptococcus_phage	5.4e-243	98.1
SQF19872.1\|1172676_1173129_-\|terminase	phage terminase small subunit	A7J290	Streptococcus_phage	6.9e-76	100.0
SQF19873.1\|1173218_1173635_-	phage protein	A7J289	Streptococcus_phage	2.8e-71	97.8
SQF19874.1\|1173631_1173823_-	phage protein	NA	NA	NA	NA
SQF19875.1\|1173826_1174096_-	phage membrane protein	NA	NA	NA	NA
SQF19876.1\|1174088_1174259_-	phage protein	A7J285	Streptococcus_phage	2.8e-22	98.1
SQF19877.1\|1174259_1175582_-	SNF2 family phage protein	A7J284	Streptococcus_phage	2.4e-249	96.6
SQF19878.1\|1175578_1175854_-	phage protein	A7J283	Streptococcus_phage	2.9e-45	96.7
SQF19879.1\|1176239_1178624_-	phage DNA primase/helicase protein	A7J282	Streptococcus_phage	1.7e-277	94.8
SQF19880.1\|1178628_1180551_-	phage DNA polymerase	A7J280	Streptococcus_phage	0.0e+00	98.3
SQF19881.1\|1180593_1181151_-	phage protein	D2J040	Enterococcus_phage	8.6e-52	59.0
SQF19882.1\|1181165_1182323_-	phage protein	A7J278	Streptococcus_phage	3.0e-216	97.9
SQF19883.1\|1182322_1182622_-	phage protein	A7J277	Streptococcus_phage	3.9e-43	99.0
SQF19884.1\|1182710_1182914_-	phage protein	A7J276	Streptococcus_phage	1.6e-32	98.5
SQF19885.1\|1183257_1183407_-	phage protein	A7J275	Streptococcus_phage	3.8e-15	90.0
SQF19886.1\|1183403_1183682_-	phage protein	A7J274	Streptococcus_phage	2.1e-43	93.5
SQF19887.1\|1183785_1183989_-	phage protein	NA	NA	NA	NA
SQF19888.1\|1183981_1184152_-	phage protein	A7J273	Streptococcus_phage	2.9e-19	87.5
SQF19889.1\|1184153_1184465_-	excisionase	A0A1S5SA25	Streptococcus_phage	1.4e-43	78.6
SQF19890.1\|1184571_1184787_+	Uncharacterised protein	A0A1S5SA41	Streptococcus_phage	1.9e-15	61.4
SQF19891.1\|1184760_1185009_-	Uncharacterised protein	A0A141E1M0	Streptococcus_phage	1.6e-26	69.5
SQF19892.1\|1185088_1185298_+	Uncharacterised protein	NA	NA	NA	NA
SQF19893.1\|1185439_1185700_+	Uncharacterised protein	M1PS67	Streptococcus_phage	5.8e-27	70.9
SQF19894.1\|1185628_1185787_-	Uncharacterised protein	NA	NA	NA	NA
SQF19895.1\|1185798_1186536_-	prophage LambdaSa1, antirepressor	A0A2H4IZX7	uncultured_Caudovirales_phage	3.6e-90	68.3
SQF19896.1\|1186547_1186739_-	phage protein	A7J270	Streptococcus_phage	4.0e-25	92.1
SQF19897.1\|1187045_1187195_+	Uncharacterised protein	NA	NA	NA	NA
SQF19898.1\|1187967_1188240_+	Cro/CI family phage transcriptional regulator	Q7Y4M0	Streptococcus_phage	4.8e-32	72.8
SQF19899.1\|1188243_1188624_+	peptidase	A0A1S5SFH2	Streptococcus_phage	8.0e-41	61.1
SQF19900.1\|1188635_1188902_+	phage protein	NA	NA	NA	NA
SQF19901.1\|1189025_1190168_+\|integrase	phage integrase family protein	M1NRJ9	Streptococcus_phage	1.2e-172	76.8
SQF19902.1\|1190257_1190533_-	DNA-binding protein HU 1	A7KV42	Bacillus_phage	2.6e-25	73.0
1190256:1190275	attR	NA	NA	NA	NA
SQF19903.1\|1190631_1191219_-	membrane protein	NA	NA	NA	NA
SQF19904.1\|1191196_1192057_-	GDSL family lipase	NA	NA	NA	NA
SQF19905.1\|1192031_1192871_-	degV family protein	A0A0N9SI50	Staphylococcus_phage	7.0e-13	35.7

DBSCAN-SWA_10

1557331 : 1609518

Streptococcus_phage(50.0%)

portal,terminase,tail,integrase,holin

attL 1557933:1557948|attR 1610486:1610501

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF20233.1\|1557331_1557514_-	phage protein	A3F673	Streptococcus_phage	3.7e-20	80.0
SQF20234.1\|1557718_1557958_+	Phage protein	NA	NA	NA	NA
1557933:1557948	attL	NA	NA	NA	NA
SQF20235.1\|1557996_1558470_+	Uncharacterised protein	A3F671	Streptococcus_phage	8.0e-83	94.3
SQF20236.1\|1558471_1558828_+	phage protein	NA	NA	NA	NA
SQF20237.1\|1558960_1559335_+	protein gp30	NA	NA	NA	NA
SQF20238.1\|1559334_1559937_+	AP2 domain	A0A1S5SAA5	Streptococcus_phage	2.1e-19	30.5
SQF20239.1\|1559938_1560154_+	Uncharacterised protein	B3GW25	Streptococcus_phage	3.7e-11	52.1
SQF20240.1\|1560222_1560462_+	Uncharacterised protein	NA	NA	NA	NA
SQF20241.1\|1560648_1561851_-	phage associated protein	Q938J4	Temperate_phage	4.6e-236	97.5
SQF20242.1\|1561966_1562194_-	phage protein	A7J2B3	Streptococcus_phage	5.8e-31	98.7
SQF20243.1\|1562190_1562466_-\|holin	phage holin	A7J2B2	Streptococcus_phage	2.6e-41	100.0
SQF20244.1\|1562475_1563093_-	phage protein	Q938J7	Temperate_phage	1.7e-77	88.8
SQF20245.1\|1563095_1563527_-	phage protein	Q938J8	Temperate_phage	1.1e-73	100.0
SQF20246.1\|1563538_1565557_-	Phage infection protein	Q938J9	Temperate_phage	2.9e-174	70.7
SQF20247.1\|1565571_1566678_-	phage hyaluronidase	A7J2A8	Streptococcus_phage	8.9e-125	72.2
SQF20248.1\|1566677_1568732_-	phage protein	A3F656	Streptococcus_phage	0.0e+00	84.0
SQF20249.1\|1568728_1569508_-\|tail	phage tail protein	A3F655	Streptococcus_phage	1.7e-66	54.8
SQF20250.1\|1569540_1573176_-	tape measure domain protein	U6E979	Streptococcus_phage	4.0e-04	28.0
SQF20251.1\|1573190_1573520_-	phage protein	A0A1P8BLR3	Lactococcus_phage	2.0e-11	41.5
SQF20252.1\|1573549_1573909_-	phage protein	D7RWD6	Brochothrix_phage	2.5e-20	44.6
SQF20253.1\|1573961_1574615_-\|tail	Major tail protein	D7RWD5	Brochothrix_phage	1.0e-40	53.0
SQF20254.1\|1574624_1575014_-	phage protein	Q38611	Lactococcus_phage	6.0e-44	66.7
SQF20255.1\|1575010_1575376_-	phage protein	A0A097BY98	Enterococcus_phage	7.7e-17	46.3
SQF20256.1\|1575356_1575665_-	phage protein	A0A2P1JTW8	Anoxybacillus_phage	3.7e-12	38.2
SQF20257.1\|1575661_1576015_-	phage protein	A0A2H4J002	uncultured_Caudovirales_phage	9.7e-25	49.6
SQF20258.1\|1576028_1576271_-	phage protein	NA	NA	NA	NA
SQF20259.1\|1576280_1577363_-	phage protein	A0A2H4J022	uncultured_Caudovirales_phage	4.5e-105	57.1
SQF20260.1\|1577365_1577734_-	phage protein	A0A0K2CNR0	Brevibacillus_phage	2.8e-06	34.5
SQF20261.1\|1577743_1578277_-	phage protein	A0A141E0S7	Streptococcus_phage	1.8e-14	82.5
SQF20262.1\|1578420_1578687_-	phage protein	A0A097PAR8	Streptococcus_pyogenes_phage	9.2e-28	76.1
SQF20263.1\|1579072_1579258_-	phage protein	NA	NA	NA	NA
SQF20264.1\|1579261_1579825_-	phage protein	NA	NA	NA	NA
SQF20265.1\|1579811_1580825_-	phage protein	U6E9F1	Streptococcus_phage	4.7e-48	44.2
SQF20266.1\|1580805_1582305_-\|portal	phage portal protein, SPP1 family	C9W9H5	Streptococcus_virus	5.8e-143	54.8
SQF20267.1\|1582316_1583561_-\|terminase	Phage terminase, large subunit	M1PG09	Streptococcus_phage	7.9e-154	65.6
SQF20268.1\|1583557_1584007_-	phage protein	Q938L4	Temperate_phage	1.4e-44	76.2
SQF20269.1\|1584055_1584433_-	phage transcriptional regulator	Q938L5	Temperate_phage	6.0e-49	73.6
SQF20270.1\|1584433_1584757_-	Uncharacterised protein	NA	NA	NA	NA
SQF20271.1\|1584815_1585133_-	phage protein	B5SP24	Lactococcus_phage	2.7e-26	58.7
SQF20272.1\|1585207_1585885_-	hypothetical amino acid ABC transporter ATP-binding protein	Q938L6	Temperate_phage	2.6e-111	86.2
SQF20273.1\|1585863_1586382_-	phage DNA methylase	A0A2H4JBH5	uncultured_Caudovirales_phage	7.0e-48	68.5
SQF20274.1\|1587014_1587449_-	autolysin regulatory protein	J7KDQ1	Streptococcus_phage	3.1e-73	97.2
SQF20275.1\|1587763_1588090_-	phage membrane protein	M1PFH6	Streptococcus_phage	5.8e-16	45.9
SQF20276.1\|1588086_1588806_-	phage protein	Q938L9	Temperate_phage	6.6e-36	55.1
SQF20277.1\|1588802_1589096_-	phage protein	A0A097PAR1	Streptococcus_pyogenes_phage	3.0e-48	97.9
SQF20278.1\|1589092_1589278_-	phage protein	A0A097PBF0	Streptococcus_pyogenes_phage	2.1e-26	98.4
SQF20279.1\|1589302_1589530_-	phage protein	A3F630	Streptococcus_phage	4.3e-26	77.3
SQF20280.1\|1589533_1590019_-	DNA N-4 cytosine methyltransferase M.NgoMXV	A0A097PAU8	Streptococcus_pyogenes_phage	4.3e-92	96.3
SQF20281.1\|1590022_1590307_-	phage membrane protein	A0A097PAV1	Streptococcus_pyogenes_phage	3.4e-36	85.1
SQF20282.1\|1590303_1590468_-	Uncharacterised protein	NA	NA	NA	NA
SQF20283.1\|1590464_1590635_-	phage protein	Q938M0	Temperate_phage	3.2e-10	96.8
SQF20284.1\|1590631_1591045_-	phage protein	Q938M1	Temperate_phage	1.2e-34	63.1
SQF20285.1\|1591054_1591324_-	phage protein	Q938M2	Temperate_phage	4.0e-47	100.0
SQF20286.1\|1591320_1591605_-	phage protein	A0A1P8VVP5	Streptococcus_phage	2.0e-49	98.9
SQF20287.1\|1591598_1591850_-	phage protein	A0A1P8VVV4	Streptococcus_phage	3.4e-40	92.8
SQF20288.1\|1591846_1592203_-	phage protein	A0A097PAU4	Streptococcus_pyogenes_phage	1.8e-58	94.9
SQF20289.1\|1592186_1592507_-	phage protein	A0A1P8VVL5	Streptococcus_phage	5.8e-53	99.1
SQF20290.1\|1592751_1594233_-	DNA primase	A0A1P8VVM0	Streptococcus_phage	4.2e-295	99.4
SQF20291.1\|1594222_1595026_-	phage protein	A0A1P8VVM6	Streptococcus_phage	1.6e-152	98.5
SQF20292.1\|1595037_1595496_-	phage protein	A0A1P8VVN0	Streptococcus_phage	5.0e-82	99.3
SQF20293.1\|1595511_1596741_-	phage DNA/RNA helicase	A0A1P8VVM2	Streptococcus_phage	2.8e-236	99.5
SQF20294.1\|1596842_1597523_-	phage protein	A0A1P8VVS4	Streptococcus_phage	1.6e-129	100.0
SQF20295.1\|1597523_1598006_-	phage protein	A0A1P8VVS5	Streptococcus_phage	4.6e-78	99.4
SQF20296.1\|1598234_1598549_-	Transcriptional regulator, Cro/CI family	A0A1P8VVN6	Streptococcus_phage	2.7e-50	95.2
SQF20297.1\|1598564_1598699_-	phage protein	A0A1P8VVR9	Streptococcus_phage	2.5e-18	97.7
SQF20298.1\|1598846_1598960_-	Uncharacterised protein	NA	NA	NA	NA
SQF20299.1\|1598980_1599340_-	Uncharacterised protein	Q9AZZ9	Lactococcus_phage	2.2e-08	50.0
SQF20300.1\|1599444_1599696_-	phage protein	A0A1P8VVV6	Streptococcus_phage	7.6e-40	94.0
SQF20301.1\|1599795_1600014_-	Transcriptional regulator, Cro family	A0A1P8VVR5	Streptococcus_phage	3.0e-32	95.8
SQF20302.1\|1600201_1600561_+	Transcriptional regulator, MerR family	A0A1P8VVN3	Streptococcus_phage	1.7e-56	95.0
SQF20303.1\|1600544_1600922_+	cI-like repressor	A0A1P8VVK5	Streptococcus_phage	4.3e-55	79.2
SQF20304.1\|1600947_1602246_+	phage membrane protein	M1PLF9	Streptococcus_phage	1.1e-110	62.7
SQF20305.1\|1602423_1603590_+\|integrase	phage integrase	A3F610	Streptococcus_phage	2.3e-78	43.1
SQF20306.1\|1603758_1606737_+	type I site-specific deoxyribonuclease, HsdR family protein	A0A220A398	Liberibacter_phage	8.2e-24	21.9
SQF20307.1\|1606749_1607925_+	Type I restriction-modification system specificity subunit	A0A2H4PQP5	Staphylococcus_phage	2.5e-16	32.9
SQF20308.1\|1607937_1609518_+	Type I restriction-modification system, DNA-methyltransferase subunit M	A0A2H4PQP4	Staphylococcus_phage	4.7e-119	48.8
1610486:1610501	attR	NA	NA	NA	NA

DBSCAN-SWA_11

1798531 : 1814233

Streptococcus_phage(61.54%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF20470.1\|1798531_1799323_-	transcriptional regulator	A0A1S5SE31	Streptococcus_phage	7.5e-09	48.5
SQF20471.1\|1799414_1799648_+	transcriptional regulator	NA	NA	NA	NA
SQF20472.1\|1799702_1800110_+	phage protein	A0A1X9I5V7	Streptococcus_phage	8.5e-49	68.7
SQF20473.1\|1800123_1800741_+	pRha family phage regulatory protein	A0A159B6D5	Gordonia_phage	2.2e-11	38.8
SQF20474.1\|1800974_1801316_+	phage protein	NA	NA	NA	NA
SQF20475.1\|1801302_1801524_+	Uncharacterised protein	NA	NA	NA	NA
SQF20476.1\|1801526_1801718_+	phage protein	NA	NA	NA	NA
SQF20477.1\|1801729_1802059_+	phage protein	NA	NA	NA	NA
SQF20478.1\|1802061_1802334_+	Uncharacterised protein	A0A1X9I5U9	Streptococcus_phage	6.1e-19	60.0
SQF20479.1\|1802334_1803231_+	replication protein	A0A1X9I6L2	Streptococcus_phage	3.0e-123	74.5
SQF20480.1\|1803211_1804849_+	phage/plasmid primase, P4 family, C-terminal domain protein	A0A1X9I717	Streptococcus_phage	1.8e-259	82.1
SQF20481.1\|1805135_1805309_+	Uncharacterised protein	A0A1X9I5U0	Streptococcus_phage	1.9e-10	59.6
SQF20482.1\|1805314_1805488_+	phage protein	NA	NA	NA	NA
SQF20483.1\|1805489_1805999_+	phage protein	A0A1X9I5U4	Streptococcus_phage	1.1e-29	63.5
SQF20484.1\|1806072_1806561_+	phage protein	A0A1X9I5V2	Streptococcus_phage	1.4e-45	54.9
SQF20485.1\|1806964_1807327_+	phage protein	A0A2H4JFS1	uncultured_Caudovirales_phage	8.7e-05	29.9
SQF20486.1\|1807301_1807685_+	phage protein	Q938L8	Temperate_phage	3.7e-14	42.4
SQF20487.1\|1807890_1808526_+	phage protein	NA	NA	NA	NA
SQF20488.1\|1808922_1811478_-	DNA mismatch repair protein mutS	A0A1V0SGG8	Hokovirus	2.3e-43	23.4
SQF20489.1\|1811464_1811671_-	cytoplasmic protein	NA	NA	NA	NA
SQF20490.1\|1811813_1812251_-	arginine repressor	NA	NA	NA	NA
SQF20491.1\|1812541_1814233_+\|tRNA	arginyl-tRNA synthetase	A0A2I2L3K1	Orpheovirus	1.9e-73	32.4

Anti-CRISPR protein detection

Acr_ID: LS483336.1|SQF20297.1|1598564_1598699_-|phage-protein

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Acr_ID: LS483336.1|SQF20298.1|1598846_1598960_-|Uncharacterised-protein

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Acr_ID: LS483336.1|SQF20299.1|1598980_1599340_-|Uncharacterised-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483336.1|SQF20297.1|1598564_1598699_-|phage-protein

1598564_1598699_-

44 aa aa

1557331-1609518

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483336_2	TypeI	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	1587499-1587532	2
LS483336_2	TypeI	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	1587499-1587532	2

1. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to LS483336 position: 1587499-1587532, mismatch: 2

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

2. spacer 2.11|1251157|34|LS483336|PILER-CR matches to LS483336 position: 1587499-1587532, mismatch: 2

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

LS483336.1|SQF20298.1|1598846_1598960_-|Uncharacterised-protein

1598846_1598960_-

37 aa aa

1557331-1609518

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483336_2	TypeI	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	1587499-1587532	2
LS483336_2	TypeI	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	1587499-1587532	2

1. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to LS483336 position: 1587499-1587532, mismatch: 2

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

2. spacer 2.11|1251157|34|LS483336|PILER-CR matches to LS483336 position: 1587499-1587532, mismatch: 2

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

LS483336.1|SQF20299.1|1598980_1599340_-|Uncharacterised-protein

1598980_1599340_-

119 aa aa

1557331-1609518

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483336_2	TypeI	2.1\|1251156\|34\|LS483336\|CRISPRCasFinder	1251156-1251189	34	1587499-1587532	2
LS483336_2	TypeI	2.11\|1251157\|34\|LS483336\|PILER-CR	1251157-1251190	34	1587499-1587532	2

1. spacer 2.1|1251156|34|LS483336|CRISPRCasFinder matches to LS483336 position: 1587499-1587532, mismatch: 2

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

2. spacer 2.11|1251157|34|LS483336|PILER-CR matches to LS483336 position: 1587499-1587532, mismatch: 2

aggcgttcacatggacgtctttttgttttgtgga	CRISPR spacer
aggcgttcgcatggacgtctttttgttttgcgga	Protospacer
********.*********************.***

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483336

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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