CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483332	Streptococcus pyogenes strain NCTC12696 genome assembly, chromosome: 1	2 crisprs	DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	0	1	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483332_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483332_1

779973-780067

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTATGCTGTTTTGAATGGTC	CRISPRCasFinder

1 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LS483332_1

>merge|LS483332|1|779973-780067|CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACCACTAGACATCTCAACATCTGGAACGGGATGTTTTAGAGCTATGCTATTTTGAATGGTC

>LS483332|1|1|779973-780067|CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTC	CCAAAACCACTAGACATCTCAACATCTGGAACGGGAT
GTTTTAGAGCTATGCTATTTTGAATGGTC

Protein	Signature genes	Signature genes Name	Protein_function
LS483332.1\|SQF12387.1\|770073_771270_+\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LS483332.1\|SQF12385.1\|767956_769312_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
LS483332.1\|SQF12403.1\|789077_790727_+\|two-component-sensor-kinase	unknown	unknown	gnl\|CDD\|225519
LS483332.1\|SQF12396.1\|782736_784365_+\|LPXTG-motif-cell-wall-anchor-domain-protein	unknown	unknown	gnl\|CDD\|237171
LS483332.1\|SQF12393.1\|778906_779218_+\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483332.1\|SQF12404.1\|790730_791519_+\|response-regulator	unknown	unknown	gnl\|CDD\|227095
LS483332.1\|SQF12402.1\|788114_788942_+\|phospotransferase-system-(PTS),-enzyme-II-component-D	unknown	unknown	gnl\|CDD\|226239
LS483332.1\|SQF12394.1\|779207_779870_+\|CRISPR-associated-family-protein	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LS483332.1\|SQF12388.1\|771279_772032_+\|oleoyl-[acyl-carrier-protein]-hydrolase	unknown	unknown	gnl\|CDD\|226401
LS483332.1\|SQF12401.1\|787308_788118_+\|PTS-system,-mannose-specific-IIC-component	unknown	unknown	gnl\|CDD\|226238
LS483332.1\|SQF12390.1\|772795_773428_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226884
LS483332.1\|SQF12386.1\|769435_770077_+\|acetyltransferase-GNAT-Family	unknown	unknown	unknown
LS483332.1\|SQF12395.1\|780717_782550_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LS483332.1\|SQF12391.1\|773907_778011_+\|CRISPR-associated-protein,-Csn1-family	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LS483332.1\|SQF12389.1\|772031_772796_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|319832
LS483332.1\|SQF12392.1\|778010_778880_+\|cytoplasmic-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LS483332.1\|SQF12398.1\|785130_786150_+\|hypothetical-membrane-spanning-protein	unknown	unknown	gnl\|CDD\|225411
LS483332.1\|SQF12399.1\|786356_786782_+\|PTS-system-mannose-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
LS483332.1\|SQF12397.1\|784563_785001_+\|methionine-sulfoxide-reductase-B	unknown	unknown	gnl\|CDD\|234692
LS483332.1\|SQF12400.1\|786800_787292_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|225976

Protein	Function_ID	Function_description	E-value
LS483332.1\|SQF12387.1\|770073_771270_+\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LS483332.1\|SQF12385.1\|767956_769312_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LS483332.1\|SQF12403.1\|789077_790727_+\|two-component-sensor-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.58211e-77
LS483332.1\|SQF12396.1\|782736_784365_+\|LPXTG-motif-cell-wall-anchor-domain-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	2.89557e-12
LS483332.1\|SQF12393.1\|778906_779218_+\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.09684e-53
LS483332.1\|SQF12404.1\|790730_791519_+\|response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	5.79862e-82
LS483332.1\|SQF12402.1\|788114_788942_+\|phospotransferase-system-(PTS),-enzyme-II-component-D	gnl\|CDD\|226239	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism].	1.55707e-109
LS483332.1\|SQF12394.1\|779207_779870_+\|CRISPR-associated-family-protein	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.6851e-120
LS483332.1\|SQF12388.1\|771279_772032_+\|oleoyl-[acyl-carrier-protein]-hydrolase	gnl\|CDD\|226401	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism].	6.29729e-107
LS483332.1\|SQF12401.1\|787308_788118_+\|PTS-system,-mannose-specific-IIC-component	gnl\|CDD\|226238	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism].	2.10148e-76
LS483332.1\|SQF12390.1\|772795_773428_+\|membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	6.77957e-87
LS483332.1\|SQF12399.1\|786356_786782_+\|PTS-system-mannose-specific-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	1.31128e-30
LS483332.1\|SQF12395.1\|780717_782550_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LS483332.1\|SQF12391.1\|773907_778011_+\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LS483332.1\|SQF12389.1\|772031_772796_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.73339e-127
LS483332.1\|SQF12392.1\|778010_778880_+\|cytoplasmic-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.0115e-131
LS483332.1\|SQF12398.1\|785130_786150_+\|hypothetical-membrane-spanning-protein	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	1.48663e-102
LS483332.1\|SQF12397.1\|784563_785001_+\|methionine-sulfoxide-reductase-B	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	3.9427e-84
LS483332.1\|SQF12400.1\|786800_787292_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	gnl\|CDD\|225976	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism].	8.80769e-55

>LS483332.1|SQF12394.1|779207_779870_+|CRISPR-associated-family-protein
MNLNFSLLDEPIPLRGGTILVLEDVCVFSKIVQYCYKYEEDSELKFFDRKMKTIKESEIMLVTDILGFDVNSSTILKLIHADLESQFNEKPEVKSMIDKLVATITELIVFECLENELDLEYDEITILELIKSLGVKVETQSDTIFEKCLEILQIFKYLTKKKLLIFVNSGAFLTKDEVASLQEYISLTNLTVLFLEPRELYDFPQYILDEDYFLITKNMV
>LS483332.1|SQF12393.1|778906_779218_+|CRISPR-associated-Cas2-family-protein
MFDMPTDTAEERKAYRKFRKFLLSEGFIMHQFSIYSKLLLNNTANNAMIGRLREHNPNKGNITLLTVTEKQFARMIYLHGERNNCIANSDERLVFLGEAFDES
>LS483332.1|SQF12392.1|778010_778880_+|cytoplasmic-protein
MAGWRTVVVNTHSKLSYKNNHLIFKDAYKTELIHLSEIDILLLETTDIVLSTMLVKRLVDENVLVIFCDDKRLPTAMLMPFYGRHDSSLQLGKQMSWSETVKSQVWTTIIAQKILNQSCYLGACSYFEKSQSIMDLYHGLENFDPSNREGHAARIYFNTLFGNDFSRDLEHPINAGLDYGYTLLLSMFAREVVVSGCMTQFGLKHANQFNQFNFASDIMEPFRPLVDKIVYENRNQPFPKIKRELFTLFSDTFVYNGKEMYLTNIVSDYTKKVVKALNNEGKGVPEFRI
>LS483332.1|SQF12391.1|773907_778011_+|CRISPR-associated-protein,-Csn1-family
MDKKYSIGLDIGTNSVGWAVITDDYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLADSTDKVDLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASRVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDTKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNSEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLAKLNREDLLRKQRTFDNGSIPYQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNTSLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDKEMIEERLKKYANLFDDKVMKQLKRRHYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLINDDSLTFKEAIQKAQVSGQGHSLHEQIANLAGSPAIKKGILQTVKIVDELVKVMGHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVRKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAKNIIHLFTLTNLGAPAAFKYFDTTIERNRYKSIKEVLDATLIHQSITGLYETRIDLSQLGGD
>LS483332.1|SQF12390.1|772795_773428_+|membrane-protein
MVENTKLLCSWVWLLALAILITIYSTWLWYPLEVDHLKLEQVVFMSKDAILHNYNGLLNYLTNPFVTRLEFANFHSSADGLKHFADVKWLFHLTQVIFLGLLYPTLKTFTQRLKTKRFWLLQKPLILAALFPLMIGLMASFIGFEHFFTLFHQVLFVGDSSWLFDPLKDPVIWILPEVFFLHCFLFFMIVYEIILWSLVGLARWQRLNVE
>LS483332.1|SQF12389.1|772031_772796_+|haloacid-dehalogenase-like-hydrolase
MPYKGYLIDLDGTIYQGKNRIPAGERFIKRLQERGIPYLLVTNNTTRTPEMVRSMLANQFNVETGIETIYTATMATVDYMNDMNRGKTAYVIGETGLKSAIAAAGYVEELENPAYVVVGLDSQVTYEMLAIATLAIQKGALFIGTNPDLNIPTERGLMPGAGALNALLEAATRVKPVFIGKPNAIIMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPEEVPTLPIQPDHVLSSLDEWRL
>LS483332.1|SQF12388.1|771279_772032_+|oleoyl-[acyl-carrier-protein]-hydrolase
MGLSYQEELTLPFELCDVKSDIKLPLLLDYCLMVSGRQSAQLGRSNNNILVDYKLVWIVTDYEITIHRLPHFQETITIETKALSYNKFFCYRQFYIYDQEGCLLVDILAYFALLNPDTRKVATIPEDLVAPFKTDFVKKLHRVPKMPLLEQSIDRDYYVRYFDIDMNGHVNNSKYLDWMYDVLGCAFLKTHQPLKMTLKYVKEVSPGGQITSSYHLDQLTSYHQIISDGQLNAQAMIEWRAIKPIESETD
>LS483332.1|SQF12387.1|770073_771270_+|coproporphyrinogen-III-oxidase
MKNQGKWFIHKNILSPKWYNKTMSKKPTSAYVHIPFCTQICYYCDFSKVFIQNQPVDAYLKALIQEFYSYGIRDLKTLYIGGGTPTAITAKQLEYLLNHLERNLNLDDLEEFTIEANPGDLTPEKIAVLQRSAVNRISLGVQTFNNKQLKQIGRSHNEEQIYSTITNLKAAGFHNISIDLIYALPGQTLDQVKENVAKALALDIPHLSLYSLILEHHTVFMNKMRRGKLNLPTEDLEAEMFEYIISEMEANGFEHYEISNFTKPGFESRHNLMYWDNVEYFGCGAGASGYLNGIRYQNRVPIQHYLKAVEAGNARLNEEVLRKEEMMEEELFLGLRKKTGVSIQRFQEKFGVSFEERYGNIVRELQNQGLLVKDDAFVRMTKKGLFLGDSVAERFILD
>LS483332.1|SQF12386.1|769435_770077_+|acetyltransferase-GNAT-Family
MTKQQIEKLADLLPPFAATLYLDMIPEFQEGYASYVYQTPKQDIQKRRIKQLTKNFERLLDTPSFYVMPVTRKTAEQLLADKGLAYHLLSTVAANQVFAAAVNEDQTLFQVLRNGARVAFVILQEKGEFLEMTLGILETVTENEVPAAIVEAVQTYLLADMQEKLPSLSIMVSQESSKLFYQEQGFVLLAKGCKPGNENDSDVCQLVKYFSKP
>LS483332.1|SQF12385.1|767956_769312_+|phosphoglucosamine-mutase
MGKYFGTDGVRGEANVELTPELAFQLGRFGGYVLSQHETERPKVFVARDTRISGEMLESALIAGLLSVGIEVYKLGVLATPGVSYLVRTEKASAGVMISASHNPALDNGIKFFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEKPNGLNINDGVGSTHPEQLQELVKETGADLGLAFDGDSDRLIAVDETGEIVDGDRIMFIIGKYLSEKGLLAHNTIVTTVMSNLGFHKALDKQGINKAITAVGDRYVVEEMRSSGYNLGGEQSGHVIIMDYNTTGDGQLTAIQLAKVMKETGKSLSELAAEVTIYPQKLVNIRVENSMKERAMEVPAIANIIAKMEDEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRTEIGCDN
>LS483332.1|SQF12395.1|780717_782550_+|GTP-binding-protein-LepA
MNSQDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNPAKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVHTTDEDMIEVSNPSEFPDPTRVAFIEEPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDMSEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKIIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDAKK
>LS483332.1|SQF12396.1|782736_784365_+|LPXTG-motif-cell-wall-anchor-domain-protein
MNKTKQNKTKQNKTKQNKTKQNKTKQNKTKHSLLCRYGLTSAAALLLTFGGASAVKANEGENGQNIAQQQQKRNDLLSALIDGISRLEKKQFPHPGSTGLDDTYMNSLIQYLQERKQVEDSWRASLLKGIQDHVLDGQDGQNGETGPMGPRGEAGKDGAKGDRGETGPAGPMGPRGEAGPTGPMGPRGEAGKDGAKGDRGETGPQGPAGKDGEKGEPGPRGEAGAQGPAGPQGPRGDKGETGDKGEQGPAGKDGAKGDRGETGPQGPAGKDGEKGEPGPRGEAGAQGPAGPQGPRGDKGETGDKGEQGPAGKDGEKGEPGPRGEAGAQGPAGPQGPRGDKGETGDKGEQGPAGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQDGQDGQDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKPAPKTPEAPQKPDTAPDTPKTPQIPGQSKDVTPAPQNPSNRGLNKPQTQGGNQLAKTPAAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN
>LS483332.1|SQF12397.1|784563_785001_+|methionine-sulfoxide-reductase-B
METSDELKQRIGDLSYEVTQHAATESPFTGEYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVTNHDDSSYGMRRVEVKSREAGSHLGHVFSDGPKEAGGLRYCINSAALKFIPYDQMEKEGYAQWLTLFDET
>LS483332.1|SQF12398.1|785130_786150_+|hypothetical-membrane-spanning-protein
MSTHLRKLPGLLLCLLLALPAWCLGRLFPIIGAPVFAILLGMLLALFYEHRDKTEEGISFTSKYILQTAVVLLGFGLNLTQVMAVGMQSLPIIISTIATALLVAYGSQKWLCIDVNTATLVGVGSSICGGSAIAATAPVIKAKDDEVAKAISVIFLFNMLAALLFPSLGQLLGLSNEVFAIFAGTAVNDTSSVTATATAWDAIHHSNTLDGATIVKLTRTLAILPITLGLSLYQAKKEHDIVTEENFSLRKSFPRFILFFLLASLITTLMTSFGVSADSFHSLKTLSKFFIVMAMAAIGLNTNLVKLIKTGGQAILLGAICWVAITLVSLAMQLSLGIW
>LS483332.1|SQF12399.1|786356_786782_+|PTS-system-mannose-specific-transporter-subunit-IIA
MERKFLIGSHGRLASGLQSSIDILAGMGQALETIDAYVDDSDYTSQIDDFIAGVAADEQGLIFTDLLGGSVNQKMVTAVMNSGKDNIFLITNSNLATLLSLVFLKPGEALTKDEIVTVINESQVQLVDLSPATDSEDDFFD
>LS483332.1|SQF12400.1|786800_787292_+|PTS-system-mannose/fructose-family-transporter-subunit-IIB
MITQIRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEITQMTLKMAVPNGMKLLIRSVEDSIKLFNDPRATDKRIFVIVNSVKDACAIAKEVPDLEAVNVANVGRFDKSDPASKVKVTPSLLLNPEEMAAAKELVSLPELDVFNQVLPSNTKVHLSQLVN
>LS483332.1|SQF12401.1|787308_788118_+|PTS-system,-mannose-specific-IIC-component
MLVPATMAALAVLICFGGNYLTGQSMMERPLVVGLVTGLLLGDMKVGILMGASLEALFLGNVNIGGVIAAEPVTATAMATTFTIISHIDQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFAPMVDKAAAANHQGKLVMLHYGTWIIYYLIIASISFIGILVGSGPVNAFVEHIPQNLMNGLSAAGGLLPAVGFAMLMKLLWTNKLAVFYLLGFVLTAYLKLPAVAVAALGAVICVISSQRDLELDAITRGAINKQTTFDSKESEEEDFFA
>LS483332.1|SQF12402.1|788114_788942_+|phospotransferase-system-(PTS),-enzyme-II-component-D
MTSQDNLTKEDRKMLRSVFWRSWTMNASRTGATQYHAVGVIYTLLPVINRFYKTDKDKAEALVRHTTWFNATMHINNFIMGLVASMEKKNSEDPDFDASAITAVKASLMGPISGVGDSFFWGILRVIAAGIGISLASAGSAMGAVVFLLLYNIPAFIIHYYSLYGGYSVGAGFIKKLYESGGIKIVTKTSSMLGLMMVGSMTASNVKFKTILTVAAKGAKEAASIQDYLDQLFIGIVPLMVTLAAFWLLRKKVNINWIMFGIMFLGIILGLLGIC
>LS483332.1|SQF12403.1|789077_790727_+|two-component-sensor-kinase
MRGEQVEEHFKKQLQDDISRHFSYQSLMLSLLLIGLFIIFSLAPQQLGLYRDINATATRYHRLISKQEALLDDLGKNSLLPFLNKNLSTADLSKHYFHLRHSSQTSPELLLFSPSQDLLFASNPHLGNVFSKSVYIQEVLRAAHPPKTLFKVAMDSEDGHYLMIIKPIIDQNQLKGYAFLVMSGKDFLHPTKTLTSELVIADKLDNTFTFSNREFIASSLDKINSQYLHHYFVFQDNRAFITRKVALQGGLWLYMYRPLIPMVSVMLFSLISSAVIFVILQRKSSGLANRIAAKNSRAINQMVRDMSAISRQEKRRIDLESQDEFQYLSDQINQMVERLQQLHDKTLDLETQKLLFEKRMLEAQFNPHFLYNTLETILITSHYDSALTEKIVIQLTKLLRYSLTDSSKPVLLKDDLSVIESYLVINQVRFEELQYSINLSPDLDSLAVPKLFLLPLIENAIKYGLKERHDVKINIACYYQDDHIIFSVRDNGSGIDAHHQKVIREQLEAGESHHGLINSYRRLKYHFSEVSLVFDQGDKQFNVSYHVKE
>LS483332.1|SQF12404.1|790730_791519_+|response-regulator
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMTAFDMFEATKDQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAKIEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAHFQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYLGQTVKAFKEEHFMKDTDRSKPC

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Crispr_ID: LS483332_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483332_3

958764-958865

Orphan

Consensus_repeat	Method
AATAATTGGTATAGTCTAATTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483332_3

>merge|LS483332|3|958764-958865|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATACCGATAAAAACAGTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACATAAAATTGGTATAGTCTAATTATA

>LS483332|3|3|958764-958865|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATA	CCGATAAAAACAGTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACA
TAAAATTGGTATAGTCTAATTATA

Protein	Signature genes	Signature genes Name	Protein_function
LS483332.1\|SQF12571.1\|959663_961166_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
LS483332.1\|SQF12575.1\|965987_966686_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224054
LS483332.1\|SQF12568.1\|956367_956703_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|225380
LS483332.1\|SQF12565.1\|954129_954966_-\|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
LS483332.1\|SQF12574.1\|965616_965988_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
LS483332.1\|SQF12579.1\|969843_972108_-\|glycogen-phosphorylase	unknown	unknown	gnl\|CDD\|340853
LS483332.1\|SQF12569.1\|956898_958713_-\|glucosamine-fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483332.1\|SQF12573.1\|962321_965432_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|180917
LS483332.1\|SQF12578.1\|968966_969587_+\|phage-protein	unknown	unknown	gnl\|CDD\|289729
LS483332.1\|SQF12562.1\|949939_951262_+\|amino-acid-symporter	unknown	unknown	gnl\|CDD\|224040
LS483332.1\|SQF12560.1\|946480_946729_-\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
LS483332.1\|SQF12564.1\|952986_953760_-\|protein-B	unknown	unknown	gnl\|CDD\|369335
LS483332.1\|SQF12561.1\|947091_949410_-\|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
LS483332.1\|SQF12566.1\|954981_955611_-\|histidine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
LS483332.1\|SQF12576.1\|966695_967481_+\|ABC-transporter-permease-protein	unknown	unknown	unknown
LS483332.1\|SQF12567.1\|955620_956262_-\|histidine-transporter-permease	unknown	unknown	gnl\|CDD\|223836
LS483332.1\|SQF12577.1\|967611_968226_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223475
LS483332.1\|SQF12572.1\|961228_962242_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LS483332.1\|SQF12570.1\|958888_959446_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
LS483332.1\|SQF12563.1\|951381_952617_+\|cation-diffusion-facilitator-transporter-family-protein	unknown	unknown	gnl\|CDD\|223131

Protein	Function_ID	Function_description	E-value
LS483332.1\|SQF12571.1\|959663_961166_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
LS483332.1\|SQF12575.1\|965987_966686_+\|ABC-transporter-family-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.0817e-63
LS483332.1\|SQF12568.1\|956367_956703_-\|phosphonoacetate-hydrolase	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	2.02984e-64
LS483332.1\|SQF12565.1\|954129_954966_-\|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.58337e-109
LS483332.1\|SQF12574.1\|965616_965988_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.0536e-49
LS483332.1\|SQF12579.1\|969843_972108_-\|glycogen-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
LS483332.1\|SQF12569.1\|956898_958713_-\|glucosamine-fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483332.1\|SQF12573.1\|962321_965432_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|180917	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.	0
LS483332.1\|SQF12578.1\|968966_969587_+\|phage-protein	gnl\|CDD\|289729	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862). Structure 3D4E shared structural similarity to beta-lactamase inhibitory proteins (BLIP) which already include 1XXM, 1S0W, 1JTG, 2G2U, 2G2W, 2B5R, and 3due. All of structures are involved in beta-lactamase inhibitor complex. (REF http://www.topsan.org/Proteins/JCSG/3d4e).	6.81674e-87
LS483332.1\|SQF12562.1\|949939_951262_+\|amino-acid-symporter	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
LS483332.1\|SQF12560.1\|946480_946729_-\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.43969e-13
LS483332.1\|SQF12564.1\|952986_953760_-\|protein-B	gnl\|CDD\|369335	pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of several bacterial CAMP factor (Cfa) proteins which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin).	2.06073e-97
LS483332.1\|SQF12561.1\|947091_949410_-\|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
LS483332.1\|SQF12566.1\|954981_955611_-\|histidine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.61041e-111
LS483332.1\|SQF12567.1\|955620_956262_-\|histidine-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.99371e-71
LS483332.1\|SQF12577.1\|967611_968226_-\|membrane-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.14841e-31
LS483332.1\|SQF12572.1\|961228_962242_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LS483332.1\|SQF12570.1\|958888_959446_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.3728e-38
LS483332.1\|SQF12563.1\|951381_952617_+\|cation-diffusion-facilitator-transporter-family-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	5.43501e-96

>LS483332.1|SQF12569.1|956898_958713_-|glucosamine-fructose-6-phosphate-aminotransferase
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVANANQTNLIKSVGRIADLRAKIGIDVAGSTGIGHTRWATHGQSTEDNAHPHTSQTGRFVLVHNGVIENYLHIKTEFLAGHDFKGQTDTEIAVHLIGKFVEEDKLSVLEAFKKALSIIEGSYAFALMDSQATDTIYVAKNKSPLLIGLGEGYNMVCSDAMAMIRETSEFMEIHDKELVILTKDKVTVTDYDGKELIRDSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRQLISTYADETGNVQVDPAIITSIQEADRLYILAAGTSYHAGFATKNMLEQLTDTPVELGVASEWGYHMPLLSKKPMFILLSQSGETADSRQVLVKANAMGIPSLTVTNVPGSTLSRESTYTMLIHAGPEIAVASTKAYTAQIAALAFLAKAVGEANGKQEALDFNLVHELSLVAQSIEATLSEKDLVAEKVQALLTTTRNAFYIGRGNDYYVAMEAALKLKEISYIQCEGFAAGELKHGTISLIEEDTPVIALISSSQLVASHTRGNIQEVAARGAHVLTVVEEGLDREGDDIIVNKVHPFLAPIAMVIPTQLIAYYASLQRGLDVDKPRNLAKAVTVE
>LS483332.1|SQF12568.1|956367_956703_-|phosphonoacetate-hydrolase
MSLPNCLQCQSEYVYEDGLLLICPMCAFEWTPGEEATEEEGLVVLDSNGVRLSDGDTITVVKDLKVKGAPKDLKQGTRVKNIRLVEGDHNIDCKIDGFGAMKLKSEFVKKI
>LS483332.1|SQF12567.1|955620_956262_-|histidine-transporter-permease
MTYIQQVLPSLLDGALVTLQVFFIVIILSIPLGAILAFLMKIPFKPLQWFLTLYVWMMRGTPLLLQLIFFYYVLPSVGISFDRMPAAILAFTLNYAAYFAEIFRGGIEAIPKGQYEAAKVLKLKPLQTIRYIILPQVFKIVLPSVFNEVINLVKDSSLVYVLGVGDLLLASKTAANRDATLAPMFIAGLIYLLLIGLVTIISKQVEKRFNYYQ
>LS483332.1|SQF12566.1|954981_955611_-|histidine-ABC-transporter-ATP-binding-protein
MLELKNISKQFGQKTIFDGFNLTVQDGEVLSLVGPSGGGKTTLLRMLAGLESIDSGQVFYNGEDVGIDHLENRNLLGFVFQDFQLFPHLTVLDNLTLSPTITMGKQKSDAKEKALDLLARLGLKEHAQVYPYSLSGGQKQRVALARAMMIDPQIIGYDEPTSALDPELRQTVEALIVQNREMGITQIVVTHDLVFAEAISDRIIRVNPK
>LS483332.1|SQF12565.1|954129_954966_-|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein
MIIKKRTVAILAIASSFFLVACQATKGLKSGDAWGVYQKQKSITVGFDNTFVPMGYKDESGKCKGFDIDLAKEVFHQYGLKVNFQAINWDMKEAELNNGKIDVIWNGYSITKDRQEKVAFTDSYMRNEQIIVVKKRSDIKTISDMKHKVLGAQSASSGYDSLLRTPKLLKDFIKNKDANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMIPTTFENEAFSVGLRKEDKTLQAKINRAFRVLYQNGKFQAISEKWFGDDVATANIKS
>LS483332.1|SQF12564.1|952986_953760_-|protein-B
MKPKHLLCLSTVVAGLALFSTMTHSVLADDASNPDTILMNNNQANLQRDALVQKLDEGHQQLEAIKHEAKGTDIEATVNKAIDAVDHMKSSIRFNTETIYDFSSIGARVEALSDAIKAIVFSTTQLTHKVEKAHTDMGFAITKLVIRIIDPFASVDAIKAQVQEIKALEEKVINYPDLQPTDRATIYTKAKLNKAIWNTRLERDKKVLGIKPFDVYNRLNKAITHAVGVQLNPTTTVQQVDDEVIAVQNALETALKS
>LS483332.1|SQF12563.1|951381_952617_+|cation-diffusion-facilitator-transporter-family-protein
MTQDPIANLKLARKGPIVSIIVYLLLSVAKLLAGYLLNASSLIADGFNNLSDIVGNVALLIGLHLASQPADANHKFGHWKIEDLSSLVTSFIMFLVGFQVLIHTIKSIFSGQQVDIDPLGAIVGIVSAFVMLGVYVFNKRLSKRVKSSALVAASKDNLADAVTSIGTSIAIIAASLHLPVIDHIAAMIITFFILKTAFDIFMESSFSLSDGFDSRHLKKYEKAILEIPKIVSVKSQRARTYGSNVYLDIVLEMNPDLSVYESHSITEKVEQLLSDQFSIYDIDIHVEPAMIPEEEIFDNVAKKLYRYEKLILSKVPDYDHYIAKSFQLIDANGQTVNYEQFLNQEIYYPSNFNHFQIESISQKTMLVTYQLNGNQRTSIWRRHESWSLLFHQITPIAKKQLHHTHYRIVKM
>LS483332.1|SQF12562.1|949939_951262_+|amino-acid-symporter
MIALVKLIDNLVWGPPLLILLVGTGIYLTSRLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAILFAGSGILVALFGIGTFAQVNSITSSLGHSFGLSPQIVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVFQSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFVLMVGLGGFLKLELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK
>LS483332.1|SQF12561.1|947091_949410_-|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA
MNPLLNGMNDRQAQAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKQLNIDPKKWNERSILGTISNAKNDLLDEKGYEAQAADMYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVLAYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNRRPKKLWTQNADGEQLVYYRANDERDEAVFVASTISNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDLIAYLTIVANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAIMDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKNFDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRASEDPDELEEERRLAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVRFSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLPFGSNSSVEEVTWQIGDIAHHKKWGDGTVLEVSGSGKTMELKIKFPEVGLKKLLASVAPIEKK
>LS483332.1|SQF12560.1|946480_946729_-|transglycosylase-associated-family-protein
MGLIWTLIVGALIGVIAGALTKKGGSMGWIANIAAGLVGSSVGQALLGSWGPSLAGMSLIPSVIGAVIVVMITSFVLNKTNN
>LS483332.1|SQF12570.1|958888_959446_-|signal-peptidase-I
MVKRDFIRNILLLLIVIIGAILLRIFVFSTFKVSPETANTYLKSGDLVTIKKNIQPKYKDFVVYRVGKKDYVSRVIAVEGDSVTYMDDIFYLNNMVESQAYLEKMKAHYLNHAPFGTLYTDDFTVATITADKYQKVPKGKYLLLNDNRKNTNDSRRFGLINASQIKGLVTFRVLPLSDFGFVEVE
>LS483332.1|SQF12571.1|959663_961166_-|pyruvate-kinase
MNKRVKIVATLGPAVEIRGGKKYGEDGYWAGQLDVEESAKKIAELIEAGANVFRFNFSHGDHKEQGDRMATVRLAEEIARQKVGFLLDTKGPEMRTELFADDAKEFSYVTGEKIRVATTQGIQSTRDVIALNVAGSLDIYDEVEVGHTILIDDGKLGLKVIDKDIATRQFIVEVENDGIIAKQKGVNIPNTKIPFPALAERDNADIRFGLEQGLNFIAISFVRTAKDVEEVREICRETGNDHVQLFAKIENQQGIDNLDEIIEAADGIMIARGDMGIEVPFEMVPVFQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGTDATMLSGESANGKYPVESVRTMATIDRNAQTLLNEYGRLDSSAFPRTNKTDVIASAVKDATHSMDIKLVVTITETGNTARAISKFRPDADILAVTFDEKVQRALMINWGVIPVLAEKPASTDDMFEVAERVAVEAGLVQSGDNIVIVAGVPVGTGGTNTMRVRTVK
>LS483332.1|SQF12572.1|961228_962242_-|6-phosphofructokinase
MKRIAVLTSGGDAPGMNAAIRAVVRKAISEGMEVYGINRGYAGMVDGDIFPLGSKEVGDKISRGGTFLYSARYPEFAQLEGQLAGIEQLKKHGIEGVVVIGGDGSYHGAMRLTEHGFPAVGIPGTIDNDIAGTDYTIGFDTAVNTAVEAIDKLRDTSSSHGRTFVVEVMGRNAGDIALWAGIASGADQIIVPEEEFDIEKVASTIQYDFEHKGKNHHIIVLAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDRVIASWMGSHAVELLKEGKGGLAVGIHNEELVESPILGTAEEGALFSLTEEGKIIVNNPHKARLDFAALNRSLSQ
>LS483332.1|SQF12573.1|962321_965432_-|DNA-polymerase-III-subunit-alpha
MFAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPVLGLEVEILYQERQVLLNLIAQNTQGYHQLLKISTAKMSGKLHMDYLCQHLEGIAVIIPSKGWSDTLVVPFDYYIGVDQYTDLSHMDSKRQLIPLRTVRYFAQDDMETLHMLHAIRDNLSLAETPVVESDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPHFNRDKSAKQELQELTEAGLKEKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKSGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMMNYSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRDFAYWIIEQRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGLLVFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGMSKHPLIDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVENHQFDSQISEILGAFPGTTPVVIHYQKNKETIALTKIQVHVTENLKEKLRPFVLKTVFR
>LS483332.1|SQF12574.1|965616_965988_+|GntR-family-transcriptional-regulator
MSWKFDEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ
>LS483332.1|SQF12575.1|965987_966686_+|ABC-transporter-family-protein
MAHLLQLHHVSKSYREKKAIDDLTITIPNGKIIGLLGPNGSGKTTLIKLINGLLQPNKGEIVIDGYRPCVETKKIISYLPDTTYLNENMRIKDMLEFFSDFYSDFDNSKATSLLRDLELDPEDRFKTLSKGNKEKVQLILVMSRKARLYVLDEPIGGVDPAARDYILKTIINSYCENASVIISTHLISDIEPILDEVIFLKQGRLFLSGNADDLRQEYQQSIDSLFRETYKV
>LS483332.1|SQF12576.1|966695_967481_+|ABC-transporter-permease-protein
MFGKLLKYEFRSIGKWYFALNAFVIAIAAILSFTIKLFAQSNSDGLFGVLTNKMLPLTLGLTFGSLIAGSLLSTLLIIIKRFSKSVFGREGYLTLTLPVNSHQIILSKLLASFICSVFNTIILAFAIAIVIVPMFNINELLEGFFNSFKMDYFINMLTVLAYVLLSTFTSILLIYLSISIGQLFSNRRGLMAFIAYFILVILISVAATYVHSHIFNINTSADSFPFTEQKTIYLLILEQFIEMIMFYLATNFIIKNKLNLQ
>LS483332.1|SQF12577.1|967611_968226_-|membrane-protein
MTKRNSKAYILWQKIIKILGIIALIGTFFLAFWLYRLGILNDSNALKDLVQRYRLWGPFVFIVVQIIQIVFPVIPGGLTTVAGFLIFGPVTGFIYNYVGIIIGSIVLFLLVKTYGRKFILLFVNDKTFYKYERRLETPGYEKLFIFCMASPVSPADIMVMITGLTDMSLKRFVTILLITKPISIIGYSYLFIFGKDVISWFLQH
>LS483332.1|SQF12578.1|968966_969587_+|phage-protein
MTKKHLLTLLLISFFTSFLVACSTTKDKEPQPSDSEIITPRLHQAAHQDKRANFEKIKLATVDSSFTGGTSLEELISLFGEPSQHDPKTAGEVTIDAYTWQFDQVTLTVNLYQNSSIVKTISNFTFARELGLSQKEYQQLQKGMSYEDVKKILTEPDNYSQASSSDHQTLQAIWVSGLKTDTSGANISLVFENNQLTEMSQVGLEE
>LS483332.1|SQF12579.1|969843_972108_-|glycogen-phosphorylase
MTRFTEYVETKLGKSLTQASNEEIYLSLLNFVKEEASHKAKNSAKRKVYYISAEFLIGKLLSNNLINLGIYKDIKEELAAAGKSIAEVEDVELEPSLGNGGLGRLASCFIDSISSLGINGEGVGLNYHCGLFKQVFKHNEQEAEPNYWIEDDSWLVPTDISYDVPFKNFTLKSRLDRIDVLGYRRDTKNYLNLFDIEGVDYGLIKDGISFDKTQIAKNLTLFLYPDDSDKNGELLRIYQQYFMVSNAAQLIIDEAIERGSNLHDLADYAYVQINDTHPSMVIPELIRLLTEKHGFDFDEAVAVVKNMVGYTNHTILAEALEKWPTAYLNEVVPHLVTIIEKLDALVRSEVSDPAVQIIDESGRVHMAHMDIHFATSVNGVAALHTEILKNSELKAFYDLYPEKFNNKTNGITFRRWLEFANQDLADYIKELIGDEYLTDATKLEKLMAFADDKAVHAKLAEIKFNNKLALKRYLKDNKDIELDEHSIIDTQIKRFHEYKRQQMNALYVIHKYLEIKKGNLPKRKITVIFGGKAAPAYIIAQDIIHLILCLSELINNDPEVSPYLNVHLVENYNVTVAEHLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELAGMENIYTFGKDSDTIINLYATASYVAKDYYDNHPAIKAAVNFIISPELLAFGNEERLDRLYKELISKDWFMTLIDLEEYIEVKEKMLADYEDQDLWMTKVVHNIAKAGFFSSDRTIEQYNEDIWHSR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448944	Streptococcus phage Javan452, complete genome	12345-12381	7	0.811
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448672	Streptococcus phage Javan117, complete genome	7926-7962	7	0.811
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448849	Streptococcus phage Javan128, complete genome	7830-7866	7	0.811
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448850	Streptococcus phage Javan132, complete genome	12655-12691	7	0.811
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448675	Streptococcus phage Javan129, complete genome	12135-12171	7	0.811
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448673	Streptococcus phage Javan119, complete genome	11431-11467	7	0.811
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448845	Streptococcus phage Javan118, complete genome	9809-9845	8	0.784
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK449010	Streptococcus phage Javan90, complete genome	10515-10551	9	0.757
LS483332_1	1.1\|780002\|37\|LS483332\|CRISPRCasFinder	780002-780038	37	MK448833	Streptococcus phage Javan87, complete genome	10515-10551	9	0.757

1. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 7, identity: 0.811

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gttttatcgctagacatctcaacatctggaacgggat	Protospacer
 .   *.*.****************************

2. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 7, identity: 0.811

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gttttatcgctagacatctcaacatctggaacgggat	Protospacer
 .   *.*.****************************

3. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 7, identity: 0.811

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gttttatcgctagacatctcaacatctggaacgggat	Protospacer
 .   *.*.****************************

4. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 7, identity: 0.811

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gttttatcgctagacatctcaacatctggaacgggat	Protospacer
 .   *.*.****************************

5. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 7, identity: 0.811

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gtattatcactagacatctcaacatctggaacaggtt	Protospacer
 .*  *.*************************.** *

6. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 7, identity: 0.811

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gtattatcgctagacatttcaacatctggaacgggat	Protospacer
 .*  *.*.********.*******************

7. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 8, identity: 0.784

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gtattatcgctagacatttcaacatctggaacgggtt	Protospacer
 .*  *.*.********.***************** *

8. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 9, identity: 0.757

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gtattatcgctagacatctcaacatctggtacaggtt	Protospacer
 .*  *.*.******************** **.** *

9. spacer 1.1|780002|37|LS483332|CRISPRCasFinder matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 9, identity: 0.757

ccaaaaccactagacatctcaacatctggaacgggat	CRISPR spacer
gtattatcgctagacatctcaacatctggtacaggtt	Protospacer
 .*  *.*.******************** **.** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36588 : 48939

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF11699.1\|36588_40362_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.4e-39	26.9
SQF11700.1\|40522_41977_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
SQF11701.1\|42004_43027_+	phosphoribosylaminoimidazole synthetase	A0A0E3FGG1	Synechococcus_phage	1.2e-62	41.1
SQF11702.1\|43194_43749_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-25	36.1
SQF11703.1\|43921_45469_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	E3SNU8	Prochlorococcus_phage	3.4e-45	52.4
SQF11704.1\|45527_46652_-	bacterial SH3 domain protein	F8HGP2	Streptococcus_phage	7.7e-07	28.6
SQF11705.1\|46814_48170_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
SQF11706.1\|48327_48939_+	phosphoribosyl carboxyaminoimidazole mutase	A0A2P0VNU7	Tetraselmis_virus	1.4e-18	43.1

DBSCAN-SWA_2

326696 : 332729

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF11967.1\|326696_327332_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.2e-65	63.4
SQF11968.1\|327349_328225_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.3e-65	44.8
SQF11969.1\|328243_328483_+	Tpl protein	NA	NA	NA	NA
SQF11970.1\|328886_329210_+	DNA replication initiation control protein	M1PFV3	Streptococcus_phage	1.3e-28	59.4
SQF11971.1\|329214_330078_+	corrin/porphyrin methyltransferase	M1PLC5	Streptococcus_phage	1.7e-115	75.0
SQF11972.1\|330104_330497_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF11973.1\|330543_331173_-	copper homeostasis protein	NA	NA	NA	NA
SQF11974.1\|331471_331828_+	arsenate reductase	M1PLC0	Streptococcus_phage	1.1e-39	65.0
SQF11975.1\|331901_332729_-	3'-exo-deoxyribonuclease	M1PSC0	Streptococcus_phage	1.7e-128	79.9

DBSCAN-SWA_3

341072 : 388249

Mycobacterium_phage(13.33%)

tRNA,bacteriocin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF11979.1\|341072_343070_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SHR2	Klosneuvirus	1.3e-86	35.0
SQF11980.1\|343565_344579_+	ribonucleotide-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	5.5e-97	52.7
SQF11981.1\|344582_345071_+	nrdI protein	R4JF54	Bacillus_phage	1.0e-11	37.5
SQF11982.1\|345037_347218_+	ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	9.5e-171	43.2
SQF11983.1\|347423_348176_-	ADP-ribosyltransferase	NA	NA	NA	NA
SQF11984.1\|348635_349238_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF11985.1\|349513_349765_+	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF11986.1\|349858_350491_-	phage protein	NA	NA	NA	NA
SQF11987.1\|351001_351970_-	Protein of uncharacterised function (DUF3644)	A0A0N9RUA4	Staphylococcus_phage	1.2e-88	52.3
SQF11988.1\|352605_352842_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA
SQF11989.1\|352834_353533_+	3-ketoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.2e-10	25.2
SQF11990.1\|353600_354560_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
SQF11991.1\|354892_356230_+	phosphoglycerate transporter protein	NA	NA	NA	NA
SQF11992.1\|356402_357785_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	A0A2K9L4K9	Tupanvirus	8.5e-32	36.0
SQF11993.1\|357815_358370_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA
SQF11994.1\|358369_358621_+	membrane protein	NA	NA	NA	NA
SQF11995.1\|358640_359336_+	MTA/SAH nucleosidase	NA	NA	NA	NA
SQF11996.1\|359486_359828_+	Uncharacterised protein	NA	NA	NA	NA
SQF11997.1\|359926_360574_-	metalloregulator ScaR	NA	NA	NA	NA
SQF11998.1\|360719_361652_+	manganese-binding protein	NA	NA	NA	NA
SQF11999.1\|361715_362441_+	manganese transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.8e-17	32.6
SQF12000.1\|362441_363296_+	ABC 3 transport family protein	NA	NA	NA	NA
SQF12001.1\|363443_364250_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.5e-20	36.6
SQF12002.1\|364466_366872_+	cell division protein FtsK	S5VNE3	Mycobacterium_phage	3.8e-88	50.5
SQF12003.1\|366941_367295_-	integral membrane protein	NA	NA	NA	NA
SQF12004.1\|367538_367964_+	50S ribosomal protein L11	NA	NA	NA	NA
SQF12005.1\|368069_368759_+	50S ribosomal protein L1	NA	NA	NA	NA
SQF12006.1\|369081_369810_+	uridylate kinase	NA	NA	NA	NA
SQF12007.1\|369838_370396_+	ribosome recycling factor	NA	NA	NA	NA
SQF12008.1\|370504_371362_+	s1 RNA binding domain	NA	NA	NA	NA
SQF12009.1\|371434_371944_+	methionine sulfoxide reductase A	NA	NA	NA	NA
SQF12010.1\|371940_372156_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQF12011.1\|372311_373493_+	lysM domain protein	A0A0E3XB61	Gordonia_phage	2.1e-15	39.6
SQF12012.1\|373806_375579_+	myosin-cross-reactive antigen	NA	NA	NA	NA
SQF12013.1\|375737_376790_+	phosphate starvation-induced protein	W8D063	Erwinia_phage	1.2e-46	50.0
SQF12014.1\|376835_377411_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA
SQF12015.1\|377569_378067_+\|protease	metalloprotease	NA	NA	NA	NA
SQF12016.1\|378047_378455_+	diacylglycerol kinase	NA	NA	NA	NA
SQF12017.1\|378574_379471_+	GTP-binding protein Era	NA	NA	NA	NA
SQF12018.1\|379491_379968_+	phosphohydrolase	NA	NA	NA	NA
SQF12019.1\|380464_380659_-	Uncharacterised protein	NA	NA	NA	NA
SQF12020.1\|381072_381303_+	truncated SilB	NA	NA	NA	NA
SQF12021.1\|381798_382509_-\|bacteriocin	bacteriocin processing peptidase	NA	NA	NA	NA
SQF12022.1\|382613_382850_-\|bacteriocin	bacteriocin processing peptidase	NA	NA	NA	NA
SQF12023.1\|383147_383372_+	blpU	NA	NA	NA	NA
SQF12024.1\|383349_383526_+	Uncharacterised protein	NA	NA	NA	NA
SQF12025.1\|383611_383839_+	Uncharacterised protein	NA	NA	NA	NA
SQF12026.1\|384739_384970_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide	NA	NA	NA	NA
SQF12027.1\|385018_385336_+	role in replication	NA	NA	NA	NA
SQF12028.1\|386325_386541_+	Transposase	U5P429	Shigella_phage	7.0e-10	45.5
SQF12029.1\|386754_387366_+\|transposase	truncated transposase	A0A1X9I5T2	Streptococcus_phage	4.6e-99	96.6
SQF12030.1\|387316_388249_+\|transposase	ISSag8, transposase	A0A1X9I5T2	Streptococcus_phage	2.3e-142	88.8

DBSCAN-SWA_4

394897 : 424170

Bacillus_phage(14.29%)

tRNA,transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF12036.1\|394897_395320_+\|transposase	transposase, Mutator family protein	NA	NA	NA	NA
SQF12037.1\|395316_395466_+\|transposase	IS1191 transposase	NA	NA	NA	NA
SQF12038.1\|395771_396017_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	NA	NA	NA	NA
SQF12039.1\|396031_396214_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	NA	NA	NA	NA
SQF12040.1\|396522_396672_-\|transposase	IS1191 transposase	NA	NA	NA	NA
SQF12041.1\|396668_397091_-\|transposase	transposase, Mutator family protein	NA	NA	NA	NA
SQF12042.1\|397408_397636_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQF12043.1\|397648_397849_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF12044.1\|398387_398669_+	Uncharacterised protein	NA	NA	NA	NA
SQF12045.1\|398862_399264_+	Uncharacterised protein	NA	NA	NA	NA
SQF12046.1\|399517_400585_+	Uncharacterised protein	NA	NA	NA	NA
SQF12047.1\|400629_401076_+	histidine kinase	NA	NA	NA	NA
SQF12048.1\|401423_401693_-	Uncharacterised protein	NA	NA	NA	NA
SQF12049.1\|402763_403630_+	transcriptional regulator	NA	NA	NA	NA
SQF12050.1\|403801_404629_+	formamidopyrimidine-DNA glycosylase	A0A127AWE5	Bacillus_phage	5.1e-16	27.5
SQF12051.1\|404625_405219_+	dephospho-CoA kinase	NA	NA	NA	NA
SQF12052.1\|405408_406911_+	ATPase	A0A248XCZ8	Klebsiella_phage	6.7e-75	41.2
SQF12053.1\|407056_408226_+	major facilitator superfamily protein	NA	NA	NA	NA
SQF12054.1\|408414_408651_+	preprotein translocase subunit	NA	NA	NA	NA
SQF12055.1\|408747_411078_+	ribonuclease R	Q0GXV6	Lactococcus_phage	8.8e-90	39.8
SQF12056.1\|411080_411548_+	ssrA-binding protein	W5RAM5	Staphylococcus_phage	5.7e-41	57.0
SQF12057.1\|411553_412273_+	glutamine cyclotransferase	NA	NA	NA	NA
SQF12058.1\|412389_413037_-	pyroglutamyl-peptidase I	NA	NA	NA	NA
SQF12059.1\|413086_414013_-	membrane protein	NA	NA	NA	NA
SQF12060.1\|414012_414696_-	membrane protein	NA	NA	NA	NA
SQF12061.1\|414906_415833_-	glucosyl transferase family 2	V5USA4	Oenococcus_phage	3.4e-77	47.5
SQF12062.1\|415977_416355_-	bleomycin resistance protein	NA	NA	NA	NA
SQF12063.1\|416365_417031_-	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA
SQF12064.1\|417079_418165_-	Xaa-Pro dipeptidase	NA	NA	NA	NA
SQF12065.1\|418338_419340_+	Catabolite control protein A	C6ZCU4	Enterobacteria_phage	6.1e-24	28.5
SQF12066.1\|419470_420469_+	glycosyltransferase	NA	NA	NA	NA
SQF12067.1\|420470_421805_+	glycosyl transferases group 1 family protein	NA	NA	NA	NA
SQF12068.1\|422226_424170_+\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	1.0e-120	38.7

DBSCAN-SWA_5

454242 : 492451

Streptococcus_phage(25.0%)

tRNA,transposase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF12100.1\|454242_454695_+\|portal	portal protein	E4ZFM3	Streptococcus_phage	5.7e-62	84.9
SQF12101.1\|454760_455069_+	prophage minor structural protein	Q6DMT0	Streptococcus_phage	5.7e-21	64.9
SQF12102.1\|455486_456473_+	huntington interacting protein HYPE	D7RWK9	Brochothrix_phage	3.2e-09	24.4
SQF12103.1\|456843_457173_+\|transposase	transposase	NA	NA	NA	NA
SQF12104.1\|457315_457690_+\|transposase	degenerate transposase	NA	NA	NA	NA
SQF12105.1\|457788_458085_+\|transposase	transposase	NA	NA	NA	NA
SQF12106.1\|458068_458857_+\|transposase	transposase	NA	NA	NA	NA
SQF12107.1\|459014_460229_+	putative transporter	NA	NA	NA	NA
SQF12108.1\|460230_461112_+	methyltransferase	NA	NA	NA	NA
SQF12109.1\|461101_462103_+	asparagine ligase A	M1PB22	Moumouvirus	5.2e-23	33.5
SQF12110.1\|462116_463364_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
SQF12111.1\|463591_464308_+	microcin C7 self-immunity protein	NA	NA	NA	NA
SQF12112.1\|464320_465532_+\|tRNA	histidyl-tRNA synthetase protein HisS	NA	NA	NA	NA
SQF12113.1\|465904_466261_-	Mobile element protein	U5P429	Shigella_phage	3.6e-11	32.8
SQF12114.1\|466754_467030_-\|transposase	transposase	NA	NA	NA	NA
SQF12115.1\|467333_468131_+	cof-like hydrolase family protein	NA	NA	NA	NA
SQF12116.1\|468134_468959_+	cof-like hydrolase family protein	NA	NA	NA	NA
SQF12117.1\|468958_470509_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
SQF12118.1\|470562_471930_-	multidrug resistance protein B	NA	NA	NA	NA
SQF12119.1\|472257_473100_+	Cryptic beta-glucoside bgl operon antiterminator	NA	NA	NA	NA
SQF12120.1\|473101_474964_+	PTS system protein	NA	NA	NA	NA
SQF12121.1\|474982_476407_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
SQF12122.1\|476505_477321_-	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF12123.1\|477320_478223_-	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF12124.1\|478366_478531_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
SQF12125.1\|478764_480897_+	transcription accessory protein	NA	NA	NA	NA
SQF12126.1\|481384_481657_+	membrane protein	NA	NA	NA	NA
SQF12127.1\|482021_482954_+	phosphorylase	NA	NA	NA	NA
SQF12128.1\|482950_483730_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
SQF12129.1\|483751_484159_+	General stress protein	NA	NA	NA	NA
SQF12130.1\|484151_484580_+	gas vesicle protein	NA	NA	NA	NA
SQF12131.1\|484739_485024_-	membrane protein	NA	NA	NA	NA
SQF12132.1\|485222_486149_+	peptidase	NA	NA	NA	NA
SQF12133.1\|486259_487537_+	peptidase, U32 family	Q6DW11	Phage_TP	7.1e-41	31.6
SQF12134.1\|487745_487958_+\|tRNA	seryl-tRNA synthetase	A0A223LEC3	Bacillus_phage	9.0e-10	46.9
SQF12135.1\|488330_489824_-\|tRNA	lysyl-tRNA synthetase	A0A1V0SAC0	Catovirus	3.3e-90	40.7
SQF12136.1\|489997_490900_+	putative hydrolase of the HAD superfamily	NA	NA	NA	NA
SQF12137.1\|491007_491631_-	phosphoglycerate mutase family protein	NA	NA	NA	NA
SQF12138.1\|491971_492451_-\|tRNA	ybaK / prolyl-tRNA synthetases associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

622263 : 632867

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF12252.1\|622263_624474_-	phosphoglycerol transferase	W6LM83	Streptococcus_phage	2.9e-268	69.2
SQF12253.1\|624581_625745_+	SAM-dependent methyltransferase	W6LLI2	Streptococcus_phage	7.6e-143	64.9
SQF12254.1\|625741_626428_+	3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	7.0e-88	68.9
SQF12255.1\|626521_627688_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-34	32.8
SQF12256.1\|627748_628090_+	hypothetical cytosolic protein	A0A1X9I5Y8	Streptococcus_phage	5.9e-19	41.1
SQF12257.1\|628310_629663_+	glutathione reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-29	23.8
SQF12258.1\|629742_631020_-	folylpolyglutamate synthase	NA	NA	NA	NA
SQF12259.1\|631049_631490_-	membrane protein	NA	NA	NA	NA
SQF12260.1\|631724_632867_+	aminotransferase class-V family protein	A0A1X6WFP1	Pacmanvirus	4.1e-24	27.0

DBSCAN-SWA_7

659832 : 693848

Bacillus_phage(27.27%)

head,tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF12285.1\|659832_660564_+\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
SQF12286.1\|660563_661556_+	thioredoxin reductase	Q9JRK7	Streptococcus_phage	8.2e-29	54.9
SQF12287.1\|661725_662859_+\|transposase	transposase	NA	NA	NA	NA
SQF12288.1\|662863_662968_+	hupothetical protein	NA	NA	NA	NA
SQF12289.1\|663058_664117_+	regulatory protein	NA	NA	NA	NA
SQF12290.1\|664129_665053_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQF12291.1\|665353_666022_+	deoR-like helix-turn-helix domain-containing protein	A0A077SK06	Escherichia_phage	2.8e-17	32.7
SQF12292.1\|666018_666930_+	1-phosphofructokinase	NA	NA	NA	NA
SQF12293.1\|666926_668873_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA
SQF12294.1\|668971_669565_+	N-acetylmuramidase	A0A249Y0X5	Enterococcus_phage	3.5e-11	33.8
SQF12295.1\|669716_670424_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q332B8	Clostridium_botulinum_C_phage	1.9e-11	36.4
SQF12296.1\|670579_670699_-\|transposase	degenerate transposase	NA	NA	NA	NA
SQF12297.1\|671380_672406_-\|protease	igG-degrading protease	NA	NA	NA	NA
SQF12298.1\|672908_673085_+	nucleoside diphosphate kinase	NA	NA	NA	NA
SQF12299.1\|673313_673694_+\|transposase	transposase	NA	NA	NA	NA
SQF12300.1\|673693_674542_+	degV family protein	NA	NA	NA	NA
SQF12301.1\|674666_675875_+\|head	poly A polymerase head domain-containing protein	H7BUW3	unidentified_phage	5.3e-38	45.0
SQF12302.1\|675871_677749_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.9e-64	31.7
SQF12303.1\|678638_679049_+	polypeptide deformylase family protein	E3SLL2	Synechococcus_phage	6.9e-06	30.6
SQF12304.1\|679130_681143_-	5'-nucleotidase	NA	NA	NA	NA
SQF12305.1\|681362_682013_+	GTP pyrophosphokinase	NA	NA	NA	NA
SQF12306.1\|682015_682684_+	two-component response regulator	W8CYM9	Bacillus_phage	2.3e-19	28.8
SQF12307.1\|682692_683925_+	two component system histidine kinase	NA	NA	NA	NA
SQF12308.1\|684218_685097_+	mevalonate kinase	NA	NA	NA	NA
SQF12309.1\|685078_686023_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
SQF12310.1\|686015_687023_+	phosphomevalonate kinase	NA	NA	NA	NA
SQF12311.1\|687015_688005_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA
SQF12312.1\|688234_689512_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
SQF12313.1\|689498_690674_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
SQF12314.1\|690882_691722_+	thymidylate synthase	U5J9N5	Bacillus_phage	1.7e-83	53.2
SQF12315.1\|691801_692299_+	dihydrofolate reductase	W5QU76	Bacillus_phage	8.6e-11	34.4
SQF12316.1\|692318_692489_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF12317.1\|692618_693848_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.0e-137	60.5

DBSCAN-SWA_8

978910 : 1006516

Staphylococcus_prophage(20.0%)

integrase,transposase

attL 979188:979203|attR 1014078:1014093

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF12585.1\|978910_979162_+\|transposase	transposase	NA	NA	NA	NA
SQF12586.1\|979103_979691_+\|transposase	truncated transposase	Q9MBM9	Staphylococcus_prophage	5.4e-28	39.6
979188:979203	attL	NA	NA	NA	NA
SQF12587.1\|980204_981188_-	alpha/beta fold family hydrolase	NA	NA	NA	NA
SQF12588.1\|981218_982469_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA
SQF12589.1\|982461_982701_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
SQF12590.1\|982718_983975_-	Protein dltB	NA	NA	NA	NA
SQF12591.1\|983971_985510_-	D-alanine--poly(phosphoribitol) ligase subunit 1	A0A2K9KZV5	Tupanvirus	1.9e-40	28.0
SQF12592.1\|985521_985665_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA
SQF12593.1\|985928_987920_-	excinuclease ABC subunit B	NA	NA	NA	NA
SQF12594.1\|988112_990287_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA
SQF12595.1\|990286_991027_+	glutamine transport ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	1.5e-35	42.1
SQF12596.1\|991174_991327_-	Uncharacterised protein	NA	NA	NA	NA
SQF12597.1\|991323_992703_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA
SQF12598.1\|992880_993330_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA
SQF12599.1\|993326_993662_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA
SQF12600.1\|993664_993976_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA
SQF12601.1\|993998_995993_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA
SQF12602.1\|996098_997193_-	outer surface protein	NA	NA	NA	NA
SQF12603.1\|997201_998602_-	beta-glucosidase	NA	NA	NA	NA
SQF12604.1\|998826_999522_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA
SQF12605.1\|999526_999685_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQF12606.1\|999753_1001067_-	GTPase ObgE	NA	NA	NA	NA
SQF12607.1\|1001124_1001253_-	membrane protein	NA	NA	NA	NA
SQF12608.1\|1001494_1002010_+\|transposase	transposase	NA	NA	NA	NA
SQF12609.1\|1002030_1002837_+\|transposase	transposase, IS861	A0A1B1P773	Bacillus_phage	1.2e-62	49.3
SQF12610.1\|1003136_1004009_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA
SQF12611.1\|1004232_1005543_+	membrane protein	NA	NA	NA	NA
SQF12612.1\|1005620_1005914_+\|transposase	transposase	NA	NA	NA	NA
SQF12613.1\|1006345_1006516_+\|integrase	integrase	U5P429	Shigella_phage	1.1e-07	46.3
1014078:1014093	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1045595 : 1136135

109

Streptococcus_phage(60.0%)

holin,capsid,protease,portal,transposase,terminase,tail,integrase,tRNA

attL 1089255:1089274|attR 1133520:1133539

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF12647.1\|1045595_1045889_+\|transposase	transposase	NA	NA	NA	NA
SQF12648.1\|1045921_1046377_+\|transposase	transposase	U5P429	Shigella_phage	4.0e-15	35.5
SQF12649.1\|1046531_1046753_+\|transposase	transposase	U5P429	Shigella_phage	9.4e-10	42.9
SQF12650.1\|1046844_1047540_-\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA
SQF12651.1\|1047558_1048320_-	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF12652.1\|1048316_1048532_-	XRE family transcriptional regulator	NA	NA	NA	NA
SQF12653.1\|1048892_1051511_-\|tRNA	Alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.1e-61	34.1
SQF12654.1\|1051992_1053126_-\|transposase	transposase	NA	NA	NA	NA
SQF12655.1\|1053223_1054279_-	foldase protein prsA 1	NA	NA	NA	NA
SQF12656.1\|1054341_1055013_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	2.4e-08	27.2
SQF12657.1\|1055114_1056311_-	major facilitator superfamily protein	NA	NA	NA	NA
SQF12658.1\|1056686_1058492_-	oligoendopeptidase F	NA	NA	NA	NA
SQF12659.1\|1058504_1059467_-	competence CoiA-like family protein	NA	NA	NA	NA
SQF12660.1\|1059762_1060479_-	16S pseudouridylate synthetase	NA	NA	NA	NA
SQF12661.1\|1060597_1061302_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
SQF12662.1\|1061503_1062532_+\|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQF12663.1\|1062571_1063759_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQF12664.1\|1063872_1064463_-	S11 family peptidase	NA	NA	NA	NA
SQF12665.1\|1064687_1064921_-	beta-lactamase	NA	NA	NA	NA
SQF12666.1\|1065087_1065693_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.8e-58	53.2
SQF12667.1\|1065789_1066830_-	DNA polymerase III subunit delta	NA	NA	NA	NA
SQF12668.1\|1066900_1069144_-	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.8e-55	59.2
SQF12669.1\|1069124_1069787_-	comE operon 1 domain-containing protein	NA	NA	NA	NA
SQF12670.1\|1069986_1070727_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQF12671.1\|1070766_1071621_+	methyltransferase	NA	NA	NA	NA
SQF12672.1\|1071610_1071889_+	GIY-YIG catalytic domain-containing protein	W8W2G4	Invertebrate_iridovirus	7.9e-06	36.0
SQF12673.1\|1071912_1073913_-	Kup system potassium uptake protein	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	3.8e-65	33.8
SQF12674.1\|1074039_1075659_-	DEAD-box ATP-dependent RNA helicase CshA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.9e-59	36.5
SQF12675.1\|1075965_1077510_-	peptide chain release factor 3	A0A1B0RXH7	Streptococcus_phage	4.8e-36	29.3
SQF12676.1\|1077747_1078443_-	integral membrane family protein	NA	NA	NA	NA
SQF12677.1\|1078522_1079914_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
SQF12678.1\|1080104_1081151_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
SQF12679.1\|1081251_1081848_-	recombination protein	NA	NA	NA	NA
SQF12680.1\|1082646_1083426_-	formate transporter	NA	NA	NA	NA
SQF12681.1\|1083549_1084092_-	membrane protein	NA	NA	NA	NA
SQF12682.1\|1084252_1084774_-	3H domain-containing protein	NA	NA	NA	NA
SQF12683.1\|1084881_1085577_-	phosphoglyceromutase	NA	NA	NA	NA
SQF12684.1\|1085815_1086751_+	dihydroorotate dehydrogenase 1A	A0A1V0SH91	Hokovirus	4.6e-66	45.1
SQF12685.1\|1087050_1088913_-	putative heavy metal-transporting ATPase	E4ZFI9	Streptococcus_phage	5.4e-90	33.8
1089255:1089274	attL	NA	NA	NA	NA
SQF12686.1\|1089443_1089626_-	paratox	A3F673	Streptococcus_phage	1.4e-19	76.7
SQF12687.1\|1089690_1089978_-	phage membrane protein	Q938I9	Temperate_phage	2.4e-29	100.0
SQF12688.1\|1089971_1090547_-	phospholipase A2 SlaA	Q938J0	Temperate_phage	1.7e-111	100.0
SQF12689.1\|1091022_1091802_-	Exotoxin type C precursor	Q938J1	Temperate_phage	1.6e-144	99.6
SQF12690.1\|1092105_1092972_-	phage protein	Q938J2	Temperate_phage	3.7e-134	100.0
SQF12691.1\|1092959_1093484_-	phage protein	Q938J3	Temperate_phage	4.0e-99	100.0
SQF12692.1\|1093623_1094832_-	phage-associated cell wall hydrolase	Q938J4	Temperate_phage	8.6e-214	86.8
SQF12693.1\|1094828_1094939_-	phage membrane protein	A7J2B4	Streptococcus_phage	1.9e-08	86.1
SQF12694.1\|1094947_1095175_-	phage protein	A7J2B3	Streptococcus_phage	2.0e-31	100.0
SQF12695.1\|1095171_1095447_-\|holin	phage holin	A7J2B2	Streptococcus_phage	2.6e-41	100.0
SQF12696.1\|1095456_1096095_-	phage protein	A3F662	Streptococcus_phage	1.2e-44	53.7
SQF12697.1\|1096097_1096526_-	phage protein	A3F661	Streptococcus_phage	1.7e-63	86.5
SQF12698.1\|1096537_1098424_-	gp58-like family protein	Q938J9	Temperate_phage	1.3e-203	86.5
SQF12699.1\|1098436_1099459_-	hyaluronoglucosaminidase	Q938K0	Temperate_phage	1.2e-168	91.7
SQF12700.1\|1099455_1101600_-	Phage endopeptidase	Q938K1	Temperate_phage	0.0e+00	93.3
SQF12701.1\|1101596_1102304_-	phage protein	Q938K2	Temperate_phage	1.7e-92	71.1
SQF12702.1\|1102303_1106227_-\|tail	phage tail protein	J7KDT4	Streptococcus_phage	1.9e-238	48.7
SQF12703.1\|1106239_1106407_-	phage protein	J7KBS0	Streptococcus_phage	2.9e-19	87.3
SQF12704.1\|1106436_1106763_-	phage protein	J7KK85	Streptococcus_phage	6.0e-37	73.1
SQF12705.1\|1106815_1107424_-\|tail	major tail protein	J7KKC8	Streptococcus_phage	2.3e-74	70.5
SQF12706.1\|1107440_1107866_-	phage protein	J7KBZ9	Streptococcus_phage	5.0e-68	85.1
SQF12707.1\|1107862_1108240_-	phage protein	J7KDM3	Streptococcus_phage	1.4e-45	72.8
SQF12708.1\|1108236_1108584_-	phage protein	J7KJ42	Streptococcus_phage	1.5e-49	85.5
SQF12709.1\|1108580_1108883_-	phage protein	J7KC36	Streptococcus_phage	6.1e-44	87.0
SQF12710.1\|1109018_1110221_-\|capsid	phage major capsid protein	J7KJ82	Streptococcus_phage	6.0e-135	64.4
SQF12711.1\|1110246_1110912_-\|protease	phage ClpP protease	M1Q115	Streptococcus_phage	4.6e-92	77.7
SQF12712.1\|1110889_1112110_-\|portal	phage portal protein	J7KDU3	Streptococcus_phage	2.0e-186	81.7
SQF12713.1\|1112143_1112368_-	phage protein	Q938K9	Temperate_phage	3.6e-17	61.4
SQF12714.1\|1112360_1112531_-	phage protein	J7KK43	Streptococcus_phage	2.3e-08	62.5
SQF12715.1\|1112527_1114282_-\|terminase	phage terminase, large subunit	J7KKD1	Streptococcus_phage	0.0e+00	96.2
SQF12716.1\|1114296_1114764_-\|terminase	phage terminase, small subunit	J7KC46	Streptococcus_phage	3.9e-82	98.7
SQF12717.1\|1114934_1115273_-	Phage endonuclease	J7KH36	Streptococcus_phage	3.0e-55	90.7
SQF12718.1\|1115857_1116298_-	phage encoded transcriptional regulator, ArpU family	Q938L8	Temperate_phage	1.9e-78	99.3
SQF12719.1\|1116573_1116945_-	Uncharacterised protein	NA	NA	NA	NA
SQF12720.1\|1116941_1117652_-	phage protein	Q938L9	Temperate_phage	3.0e-25	46.2
SQF12721.1\|1117654_1118287_-	phage protein	L0P368	Streptococcus_phage	2.3e-85	68.6
SQF12722.1\|1118288_1118573_-	phage membrane protein	A0A097PAV1	Streptococcus_pyogenes_phage	1.4e-37	89.4
SQF12723.1\|1118569_1118974_-	phage protein	A3F627	Streptococcus_phage	1.6e-39	65.2
SQF12724.1\|1118983_1119253_-	phage protein	A0A1P8VVR6	Streptococcus_phage	3.1e-47	100.0
SQF12725.1\|1119249_1119534_-	phage protein	A0A1P8VVP5	Streptococcus_phage	2.2e-48	96.8
SQF12726.1\|1119579_1119768_-	phage protein	A0A1P8VVV4	Streptococcus_phage	5.0e-20	97.8
SQF12727.1\|1119764_1119923_-	phage protein	A0A1P8VVP9	Streptococcus_phage	4.2e-20	96.2
SQF12728.1\|1120105_1120426_-	phage protein	A0A1P8VVL5	Streptococcus_phage	7.1e-51	94.3
SQF12729.1\|1120422_1120836_-	phage protein	A0A2H4JHE6	uncultured_Caudovirales_phage	2.8e-15	50.0
SQF12730.1\|1121097_1122573_-	DNA primase	A0A1P8VVM0	Streptococcus_phage	2.9e-248	86.7
SQF12731.1\|1122562_1123366_-	phage protein	A0A1P8VVM6	Streptococcus_phage	1.5e-150	97.4
SQF12732.1\|1123377_1123836_-	phage protein	A0A1P8VVN0	Streptococcus_phage	5.0e-82	99.3
SQF12733.1\|1123851_1125081_-	phage DNA/RNA helicase	A0A1P8VVM2	Streptococcus_phage	3.3e-237	100.0
SQF12734.1\|1125182_1125863_-	phage protein	A0A1P8VVS4	Streptococcus_phage	1.6e-129	100.0
SQF12735.1\|1125863_1126346_-	phage protein	A0A1P8VVS5	Streptococcus_phage	4.6e-78	99.4
SQF12736.1\|1126493_1126808_-	Transcriptional regulator, Cro/CI family	A0A1P8VVN6	Streptococcus_phage	1.3e-49	94.2
SQF12737.1\|1126823_1126958_-	phage protein	A0A1P8VVR9	Streptococcus_phage	9.6e-18	95.5
SQF12738.1\|1126959_1127271_-	excisionase	A0A1S5SA25	Streptococcus_phage	1.4e-43	78.6
SQF12739.1\|1127348_1127534_-	phage regulatory protein	A0A1X9I6I3	Streptococcus_phage	3.3e-16	72.1
SQF12740.1\|1127700_1127940_+	phage protein	NA	NA	NA	NA
SQF12741.1\|1128090_1128300_+	phage protein	NA	NA	NA	NA
SQF12742.1\|1128258_1128504_-	phage protein	A0A097PAP6	Streptococcus_pyogenes_phage	1.2e-34	95.1
SQF12743.1\|1128552_1129359_+	protein Ymh	A0A1S5SBU1	Streptococcus_phage	7.9e-123	82.1
SQF12744.1\|1129293_1129560_-	phage protein	A0A1S5SC19	Streptococcus_phage	1.1e-23	66.3
SQF12745.1\|1129570_1129810_-	Cro/CI family phage transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	1.4e-35	98.7
SQF12746.1\|1129903_1130503_+	phage protein	A0A097PAT4	Streptococcus_pyogenes_phage	3.1e-108	100.0
SQF12747.1\|1130532_1130691_-	phage protein	A0A097PAP2	Streptococcus_pyogenes_phage	4.8e-24	100.0
SQF12748.1\|1130787_1130889_-	Uncharacterised protein	NA	NA	NA	NA
SQF12749.1\|1131063_1131852_+	Phage transcriptional repressor	A0A1S5SD15	Streptococcus_phage	2.0e-86	63.0
SQF12750.1\|1131861_1132167_+	phage membrane protein	NA	NA	NA	NA
SQF12751.1\|1132289_1133432_+\|integrase	phage integrase family protein	M1NRJ9	Streptococcus_phage	2.4e-173	77.4
SQF12752.1\|1133521_1133797_-	DNA-binding protein HU 1	A7KV42	Bacillus_phage	2.6e-25	73.0
1133520:1133539	attR	NA	NA	NA	NA
SQF12753.1\|1133895_1134483_-	membrane protein	NA	NA	NA	NA
SQF12754.1\|1134460_1135321_-	GDSL family lipase	NA	NA	NA	NA
SQF12755.1\|1135295_1136135_-	degV family protein	A0A0N9SI50	Staphylococcus_phage	7.0e-13	35.7

DBSCAN-SWA_10

1255874 : 1318831

Streptococcus_phage(77.59%)

capsid,portal,terminase,tail,integrase,tRNA

attL 1272728:1272743|attR 1318860:1318875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF12855.1\|1255874_1256810_-\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	6.0e-05	38.5
SQF12856.1\|1256871_1259256_-	primosome assembly protein	NA	NA	NA	NA
SQF12857.1\|1259320_1259638_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
SQF12858.1\|1259653_1260289_-	guanylate kinase	S4VT50	Pandoravirus	4.9e-11	45.3
SQF12859.1\|1260398_1262006_-	phosphohydrolase	NA	NA	NA	NA
SQF12860.1\|1262135_1263032_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.1e-07	21.9
SQF12861.1\|1263226_1264414_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
SQF12862.1\|1264437_1265088_+	acetyl-CoA:acetoacetyl-CoA transferase subunit alpha	NA	NA	NA	NA
SQF12863.1\|1265089_1265749_+	acetate CoA-transferase subunit beta	NA	NA	NA	NA
SQF12864.1\|1265781_1266561_+	D(-)-3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
SQF12865.1\|1266631_1267963_+	gntP permease family protein	NA	NA	NA	NA
SQF12866.1\|1268036_1268519_+	S-ribosylhomocysteinase	NA	NA	NA	NA
SQF12867.1\|1268663_1270133_-	holliday junction-specific endonuclease	NA	NA	NA	NA
SQF12868.1\|1270146_1271301_-	N6-adenine-specific DNA methylase	NA	NA	NA	NA
SQF12869.1\|1271745_1272072_-	cell division initiation protein	NA	NA	NA	NA
SQF12870.1\|1272193_1272709_-	hypothetical cytosolic protein	NA	NA	NA	NA
1272728:1272743	attL	NA	NA	NA	NA
SQF12871.1\|1272789_1273398_+	recombination protein U	A0A1C8E9C3	Bacillus_phage	3.2e-23	33.9
SQF12872.1\|1273384_1275550_+	penicillin-binding protein 1A	NA	NA	NA	NA
SQF12873.1\|1275761_1275851_-	Uncharacterised protein	NA	NA	NA	NA
SQF12874.1\|1275793_1275976_-	phage protein	J7KBZ4	Streptococcus_phage	1.9e-16	74.6
SQF12875.1\|1276196_1276952_+	exotoxin type A	A0A097PAT7	Streptococcus_pyogenes_phage	2.2e-143	100.0
SQF12876.1\|1277073_1278291_-	N-acetylmuramoyl-L-alanine amidase	A0A1P8VVM5	Streptococcus_phage	2.6e-162	59.5
SQF12877.1\|1278284_1278401_-	phage membrane protein	A7J2B4	Streptococcus_phage	7.0e-09	97.1
SQF12878.1\|1278409_1278637_-	phage protein	A7J2B3	Streptococcus_phage	2.0e-31	100.0
SQF12879.1\|1278633_1278906_-	phage membrane protein	A7J2B2	Streptococcus_phage	5.5e-36	91.0
SQF12880.1\|1278917_1279550_-	phage protein	Q938J7	Temperate_phage	2.6e-44	50.0
SQF12881.1\|1279552_1279981_-	phage protein	Q938J8	Temperate_phage	8.1e-58	84.3
SQF12882.1\|1279992_1281897_-	Phage infection protein	Q938J9	Temperate_phage	1.1e-210	83.7
SQF12883.1\|1281906_1282914_-	hyaluronoglucosaminidase	Q938K0	Temperate_phage	9.9e-115	64.9
SQF12884.1\|1282910_1284962_-	phage protein	A3F656	Streptococcus_phage	0.0e+00	84.6
SQF12885.1\|1284958_1285729_-\|tail	phage tail protein	A3F655	Streptococcus_phage	2.1e-128	87.5
SQF12886.1\|1285741_1289842_-\|tail	tail protein	A3F654	Streptococcus_phage	0.0e+00	66.3
SQF12887.1\|1290067_1290370_-	Uncharacterised protein	A3F652	Streptococcus_phage	1.8e-48	96.0
SQF12888.1\|1290462_1291047_-\|tail	major tail protein - phage associated	A3F651	Streptococcus_phage	3.1e-92	90.2
SQF12889.1\|1291058_1291439_-	Uncharacterised protein	A3F650	Streptococcus_phage	7.4e-63	99.2
SQF12890.1\|1291431_1291830_-	Uncharacterised protein	A3F649	Streptococcus_phage	2.9e-70	100.0
SQF12891.1\|1291831_1292194_-	Uncharacterised protein	A3F648	Streptococcus_phage	1.1e-60	97.5
SQF12892.1\|1292186_1292495_-	Uncharacterised protein	A3F647	Streptococcus_phage	1.2e-47	99.0
SQF12893.1\|1292494_1292668_-	Uncharacterised protein	A3F646	Streptococcus_phage	6.4e-22	94.7
SQF12894.1\|1292681_1293815_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A3F645	Streptococcus_phage	3.2e-202	96.8
SQF12895.1\|1293831_1294638_-	scaffolding protein	A3F644	Streptococcus_phage	6.0e-147	97.8
SQF12896.1\|1294618_1295806_-\|portal	HK97 family phage portal protein	A3F643	Streptococcus_phage	5.6e-218	96.2
SQF12897.1\|1295958_1296171_-	Uncharacterised protein	A3F642	Streptococcus_phage	4.0e-34	95.7
SQF12898.1\|1296173_1297904_-\|terminase	putative phage terminase, large subunit	A3F641	Streptococcus_phage	0.0e+00	97.0
SQF12899.1\|1297916_1298234_-	Uncharacterised protein	A3F640	Streptococcus_phage	3.9e-49	99.0
SQF12900.1\|1298374_1298680_-	HNH endonuclease	A3F639	Streptococcus_phage	3.8e-54	96.0
SQF12901.1\|1298672_1299059_-	Uncharacterised protein	A3F638	Streptococcus_phage	1.4e-64	93.0
SQF12902.1\|1299084_1299288_-	Uncharacterised protein	NA	NA	NA	NA
SQF12903.1\|1299345_1299639_-	Uncharacterised protein	NA	NA	NA	NA
SQF12904.1\|1299792_1300368_-	phage associated recombinase	A3F636	Streptococcus_phage	7.4e-107	99.5
SQF12905.1\|1300527_1300929_-	phage 31 late promoter transcriptional activator	A3F635	Streptococcus_phage	2.7e-71	100.0
SQF12906.1\|1300943_1301771_-	B-cell receptor associated protein-like protein	A3F634	Streptococcus_phage	1.3e-117	100.0
SQF12907.1\|1301773_1302112_-	immunity repressor protein - phage associated	A3F633	Streptococcus_phage	1.1e-54	92.9
SQF12908.1\|1302108_1302390_-	Uncharacterised protein	A3F632	Streptococcus_phage	4.5e-33	92.2
SQF12909.1\|1302404_1302797_-	single strand binding protein	A0A1P8VVS8	Streptococcus_phage	6.9e-48	70.3
SQF12910.1\|1302793_1303015_-	Uncharacterised protein	NA	NA	NA	NA
SQF12911.1\|1303011_1303497_-	phage protein	A0A1S5S9L5	Streptococcus_phage	5.6e-23	41.4
SQF12912.1\|1303501_1304134_-	phage protein	L0P368	Streptococcus_phage	5.9e-81	65.7
SQF12913.1\|1304135_1304405_-	phage membrane protein	A7J287	Streptococcus_phage	1.4e-28	80.9
SQF12914.1\|1304401_1304572_-	phage protein	Q938M0	Temperate_phage	2.7e-09	55.4
SQF12915.1\|1304568_1305012_-	phage protein	A0A1C9LX52	Streptococcus_phage	1.6e-32	55.0
SQF12916.1\|1305028_1305178_-	phage protein	NA	NA	NA	NA
SQF12917.1\|1305167_1305395_-	phage protein	C5J991	Streptococcus_phage	9.3e-13	49.3
SQF12918.1\|1305394_1306207_-	phage DNA replication protein	A0A1P8VVV9	Streptococcus_phage	6.8e-122	77.6
SQF12919.1\|1306206_1306968_-	dnaD and phage-associated domain protein	A0A220GFI5	Streptococcus_phage	9.1e-28	56.1
SQF12920.1\|1306960_1308301_-	DNA polymerase III delta prime subunit	A0A1P8VVQ6	Streptococcus_phage	7.1e-209	84.7
SQF12921.1\|1308287_1308476_-	Uncharacterised protein	NA	NA	NA	NA
SQF12922.1\|1308596_1308788_-	Uncharacterised protein	NA	NA	NA	NA
SQF12923.1\|1308880_1309138_-	phage protein	A3F618	Streptococcus_phage	5.4e-41	98.8
SQF12924.1\|1309211_1309931_-	antirepressor - phage associated	A3F617	Streptococcus_phage	4.6e-106	78.7
SQF12925.1\|1309982_1310483_+	Uncharacterised protein	NA	NA	NA	NA
SQF12926.1\|1310602_1310737_-	Uncharacterised protein	A3F616	Streptococcus_phage	2.4e-16	95.5
SQF12927.1\|1310810_1311023_-	phage protein	M1Q1B4	Streptococcus_phage	1.7e-13	52.9
SQF12928.1\|1311057_1311333_-	Uncharacterised protein	NA	NA	NA	NA
SQF12929.1\|1311621_1311972_+	repressor - phage associated	A0A1S5SAD3	Streptococcus_phage	1.2e-35	63.5
SQF12930.1\|1311975_1312368_+	phage protein	A3F612	Streptococcus_phage	2.2e-38	68.7
SQF12931.1\|1312378_1313119_+	phage protein	A3F611	Streptococcus_phage	1.6e-130	100.0
SQF12932.1\|1313429_1314626_+\|integrase	phage associated integrase	A3F610	Streptococcus_phage	3.9e-227	99.0
SQF12933.1\|1315028_1316366_-	aminopeptidase C	R4TV59	Phaeocystis_globosa_virus	1.4e-68	37.0
SQF12934.1\|1316550_1317375_-	NAD synthetase	G3MA24	Bacillus_virus	5.3e-74	58.2
SQF12935.1\|1317376_1318831_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	7.2e-98	41.8
1318860:1318875	attR	NA	NA	NA	NA

DBSCAN-SWA_11

1470471 : 1540633

101

Streptococcus_phage(32.86%)

holin,portal,head,terminase,tail,integrase,tRNA

attL 1494909:1494924|attR 1545169:1545184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF13083.1\|1470471_1470780_-\|tRNA	seryl-tRNA synthetase	NA	NA	NA	NA
SQF13084.1\|1470936_1471839_+	ribonuclease HIII	NA	NA	NA	NA
SQF13085.1\|1471849_1472443_+	signal peptidase I	NA	NA	NA	NA
SQF13086.1\|1472500_1474954_+	Exodeoxyribonuclease V alpha chain	U5J9B0	Bacillus_phage	7.2e-58	28.5
SQF13087.1\|1475044_1475527_+	membrane protein	NA	NA	NA	NA
SQF13088.1\|1475619_1476714_-	DNA polymerase IV	NA	NA	NA	NA
SQF13089.1\|1476923_1479251_+	pyruvate formate-lyase	A0A2P0VNR5	Tetraselmis_virus	4.2e-116	33.4
SQF13090.1\|1479430_1480369_-	beta-lactamase family protein	NA	NA	NA	NA
SQF13091.1\|1480365_1481118_-	C3-degrading proteinase	NA	NA	NA	NA
SQF13092.1\|1481415_1482312_+	sodium:solute symporter	NA	NA	NA	NA
SQF13093.1\|1482646_1483495_-	glycerol uptake permease	M1HJ75	Acanthocystis_turfacea_Chlorella_virus	1.2e-23	31.6
SQF13094.1\|1483996_1485193_-	quinolone MFS transporter	NA	NA	NA	NA
SQF13095.1\|1485298_1486018_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
SQF13096.1\|1486039_1488322_+	xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA
SQF13097.1\|1488401_1488623_-	helix-turn-helix family protein	A0A1W6JP54	Staphylococcus_phage	4.8e-06	41.2
SQF13098.1\|1488792_1489167_+	Transcriptional regulator	A0A097BY95	Leuconostoc_phage	2.7e-17	51.6
SQF13099.1\|1489511_1489691_-	Paratox	A3F673	Streptococcus_phage	6.4e-17	75.9
SQF13100.1\|1489928_1490729_+	streptodornase	NA	NA	NA	NA
SQF13101.1\|1491108_1491435_+	phage membrane protein	NA	NA	NA	NA
SQF13102.1\|1491484_1492351_-	phage protein	Q938J2	Temperate_phage	1.1e-133	99.7
SQF13103.1\|1492338_1492863_-	phage protein	Q938J3	Temperate_phage	1.2e-98	99.4
SQF13104.1\|1493002_1494211_-	phage-associated cell wall hydrolase	Q938J4	Temperate_phage	1.5e-210	85.6
SQF13105.1\|1494207_1494318_-	phage membrane protein	A7J2B4	Streptococcus_phage	1.8e-09	97.2
SQF13106.1\|1494326_1494554_-\|holin	prophage LambdaSa03, holin	A7J2B3	Streptococcus_phage	7.6e-31	98.7
SQF13107.1\|1494550_1494826_-\|holin	phage holin	A7J2B2	Streptococcus_phage	2.6e-41	100.0
SQF13108.1\|1494835_1495453_-	phage protein	Q938J7	Temperate_phage	1.0e-74	86.3
1494909:1494924	attL	NA	NA	NA	NA
SQF13109.1\|1495455_1495617_-	phage protein	NA	NA	NA	NA
SQF13110.1\|1495630_1497541_-	phage protein	Q938J9	Temperate_phage	2.5e-119	71.0
SQF13111.1\|1497556_1498561_-	hyaluronidase	Q938K0	Temperate_phage	1.9e-102	60.3
SQF13112.1\|1498557_1500609_-	phage protein	A3F656	Streptococcus_phage	0.0e+00	85.2
SQF13113.1\|1500605_1501385_-\|tail	phage tail protein	A3F655	Streptococcus_phage	1.7e-66	54.8
SQF13114.1\|1501417_1505053_-	tape measure domain protein	U6E979	Streptococcus_phage	4.0e-04	28.0
SQF13115.1\|1505067_1505397_-	phage protein	A0A1P8BLR3	Lactococcus_phage	5.7e-11	40.6
SQF13116.1\|1505438_1505792_-	phage protein	Q77RZ7	Lactococcus_phage	5.5e-20	48.6
SQF13117.1\|1505844_1506498_-\|tail	phage major tail protein	D7RWD5	Brochothrix_phage	7.3e-42	52.2
SQF13118.1\|1506507_1506897_-	phage protein	Q8LTQ5	Lactococcus_phage	2.2e-46	69.8
SQF13119.1\|1506893_1507259_-	phage protein	A0A097BY98	Enterococcus_phage	3.1e-18	47.9
SQF13120.1\|1507239_1507548_-	phage protein	A0A2P1JTW8	Anoxybacillus_phage	5.7e-13	40.2
SQF13121.1\|1507544_1507898_-	phage protein	A0A2H4J002	uncultured_Caudovirales_phage	9.7e-25	49.6
SQF13122.1\|1507911_1508154_-	phage protein	NA	NA	NA	NA
SQF13123.1\|1508163_1509240_-\|head	phage head protein	A0A2H4J022	uncultured_Caudovirales_phage	5.5e-103	56.0
SQF13124.1\|1509239_1509620_-	phage protein	A0A0K2CNR0	Brevibacillus_phage	4.1e-05	33.3
SQF13125.1\|1509629_1510163_-	phage protein	A0A141E0S7	Streptococcus_phage	1.2e-15	84.2
SQF13126.1\|1510306_1510573_-	phage protein	A0A097PAR8	Streptococcus_pyogenes_phage	6.6e-26	71.6
SQF13127.1\|1510575_1510890_-	phage protein	M1PLI3	Streptococcus_phage	6.8e-38	72.8
SQF13128.1\|1510959_1511145_-	phage protein	NA	NA	NA	NA
SQF13129.1\|1511148_1512711_-	phage protein	U6E9F1	Streptococcus_phage	3.3e-48	44.2
SQF13130.1\|1512691_1514194_-\|portal	phage portal protein, SPP1 family	C9W9H5	Streptococcus_virus	1.9e-141	54.5
SQF13131.1\|1514205_1515495_-\|terminase	terminase large subunit	A0A2H4IYR5	uncultured_Caudovirales_phage	1.7e-183	74.9
SQF13132.1\|1515472_1515955_-\|terminase	phage terminase small subunit	E0Y3R8	Staphylococcus_virus	3.3e-15	40.3
SQF13133.1\|1516786_1517227_-	phage encoded transcriptional regulator, ArpU family	Q938L8	Temperate_phage	5.0e-79	100.0
SQF13134.1\|1517499_1517670_-	phage protein	A0A097PAS8	Streptococcus_pyogenes_phage	3.5e-25	96.3
SQF13135.1\|1517666_1518188_-	phage protein	Q938L9	Temperate_phage	5.6e-69	76.3
SQF13136.1\|1518184_1518478_-	phage protein	A0A097PAR1	Streptococcus_pyogenes_phage	8.0e-49	97.9
SQF13137.1\|1518474_1518660_-	phage protein	A0A097PBF0	Streptococcus_pyogenes_phage	7.0e-27	100.0
SQF13138.1\|1518757_1519243_-	DNA N-4 cytosine methyltransferase M.NgoMXV	A0A097PAU8	Streptococcus_pyogenes_phage	3.6e-94	99.4
SQF13139.1\|1519246_1519531_-	phage membrane protein	A0A097PAV1	Streptococcus_pyogenes_phage	5.0e-40	91.5
SQF13140.1\|1519527_1519932_-	phage protein	Q938M1	Temperate_phage	3.4e-66	94.0
SQF13141.1\|1519915_1520203_-	phage protein	J7KDH9	Streptococcus_phage	5.1e-32	75.0
SQF13142.1\|1520202_1520448_-	phage protein	A0A1P8VVV4	Streptococcus_phage	6.7e-41	98.8
SQF13143.1\|1520444_1520801_-	phage protein	A0A097PAU4	Streptococcus_pyogenes_phage	5.5e-60	98.3
SQF13144.1\|1520797_1521238_-	phage protein	A0A097PAS0	Streptococcus_pyogenes_phage	4.5e-80	97.9
SQF13145.1\|1521446_1521872_-	single-stranded DNA-binding protein ssb	A0A097PAQ3	Streptococcus_pyogenes_phage	2.8e-55	82.3
SQF13146.1\|1521864_1522539_-	Recombination protein	A0A097PBE8	Streptococcus_pyogenes_phage	7.6e-119	99.1
SQF13147.1\|1522539_1523022_-	phage protein	Q938M9	Temperate_phage	8.2e-51	100.0
SQF13148.1\|1523043_1523298_-	phage protein	Q938N0	Temperate_phage	1.8e-41	96.4
SQF13149.1\|1523284_1523632_-	phage protein	A0A097PAU3	Streptococcus_pyogenes_phage	4.6e-11	47.7
SQF13150.1\|1523644_1523782_-	phage protein	J7KBQ4	Streptococcus_phage	2.7e-07	78.4
SQF13151.1\|1523772_1524555_-	DNA replication protein DnaC	A0A097PAQ0	Streptococcus_pyogenes_phage	2.7e-144	98.1
SQF13152.1\|1524541_1525345_-	DNA replication protein DnaC	A0A2P0VI76	Streptococcus_phage	2.4e-63	53.8
SQF13153.1\|1525460_1525904_-	Uncharacterised protein	NA	NA	NA	NA
SQF13154.1\|1525959_1526340_+	Uncharacterised protein	NA	NA	NA	NA
SQF13155.1\|1526329_1526602_-	Uncharacterised protein	NA	NA	NA	NA
SQF13156.1\|1526774_1526954_-	Uncharacterised protein	A0A1X9I5M8	Streptococcus_phage	1.2e-12	65.5
SQF13157.1\|1527084_1527219_-	phage protein	A0A1P8VVR9	Streptococcus_phage	9.6e-18	95.5
SQF13158.1\|1527366_1527480_-	Uncharacterised protein	NA	NA	NA	NA
SQF13159.1\|1527500_1527860_-	Uncharacterised protein	Q9AZZ9	Lactococcus_phage	2.2e-08	50.0
SQF13160.1\|1527933_1528191_-	Uncharacterised protein	X2KPF2	Streptococcus_phage	3.3e-06	36.8
SQF13161.1\|1528393_1528735_-	phage protein	NA	NA	NA	NA
SQF13162.1\|1528809_1529010_+	phage protein	A0A1S5S8T9	Streptococcus_phage	3.3e-22	75.4
SQF13163.1\|1529006_1529156_-	phage protein	Q938N4	Temperate_phage	2.3e-20	98.0
SQF13164.1\|1529187_1529952_-	P1-type antirepressor	Q938N5	Temperate_phage	1.7e-111	81.8
SQF13165.1\|1529948_1530137_-	putative cro protein	A0A0B5A7F0	Streptococcus_phage	1.8e-14	65.6
SQF13166.1\|1530197_1530611_+	phage protein	NA	NA	NA	NA
SQF13167.1\|1530783_1531545_-	Antirepressor	Q6SEF4	Lactobacillus_prophage	3.3e-86	63.2
SQF13168.1\|1531711_1531984_+	phage protein	NA	NA	NA	NA
SQF13169.1\|1531972_1532173_-	Uncharacterised protein	NA	NA	NA	NA
SQF13170.1\|1532208_1532424_-	XRE family transcriptional regulator	J7KK54	Streptococcus_phage	5.0e-32	98.6
SQF13171.1\|1532497_1532725_+	Uncharacterised protein	NA	NA	NA	NA
SQF13172.1\|1532841_1533621_+	Uncharacterised protein	A0A1S5S7L0	Streptococcus_phage	6.2e-48	57.4
SQF13173.1\|1533556_1533721_-	Uncharacterised protein	NA	NA	NA	NA
SQF13174.1\|1533754_1533913_-	Uncharacterised protein	J7KH24	Streptococcus_phage	1.7e-21	92.3
SQF13175.1\|1534008_1534110_-	Uncharacterised protein	NA	NA	NA	NA
SQF13176.1\|1534276_1535035_+	Repressor protein	J7KJ52	Streptococcus_phage	1.2e-120	88.0
SQF13177.1\|1535107_1535530_+	Lj965 prophage superinfection immunity protein	NA	NA	NA	NA
SQF13178.1\|1535650_1536787_+\|integrase	Prophage NZ131.3 integrase	A0A1B1IMP1	Lactococcus_phage	1.3e-57	35.6
SQF13179.1\|1536846_1537146_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQF13180.1\|1537202_1537940_-	transcriptional regulator, MerR family	NA	NA	NA	NA
SQF13181.1\|1538091_1538679_-	DNA polymerase III subunit epsilon	A0A0A8WJ41	Clostridium_phage	9.2e-12	28.9
SQF13182.1\|1538727_1539258_-	DNA-binding protein	NA	NA	NA	NA
SQF13183.1\|1539463_1540633_+\|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG	A0A2H4PQX1	Staphylococcus_phage	5.5e-16	53.0
1545169:1545184	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1763594 : 1783062

Streptococcus_phage(64.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF13372.1\|1763594_1764815_-	transporter	A0A2H4PQR6	Staphylococcus_phage	3.5e-05	23.6
SQF13373.1\|1764825_1766808_-	DNA mismatch repair protein	A0A1B2LRQ5	Wolbachia_phage	2.3e-62	30.1
SQF13374.1\|1766902_1768048_-	DNA integration/recombination/inversion protein	A0A1X9I5Y5	Streptococcus_phage	3.5e-84	44.9
SQF13375.1\|1769294_1770062_-	repressor protein	Q76TK4	Streptococcus_pyogenes_phage	3.6e-72	83.1
SQF13376.1\|1770215_1770422_+	Cro/CI family phage transcriptional regulator	X2KUC2	Streptococcus_phage	2.4e-07	47.0
SQF13377.1\|1770455_1770656_+	phage transcriptional repressor	A0A1S5SE31	Streptococcus_phage	3.4e-11	56.7
SQF13378.1\|1770676_1771084_+	phage protein	A0A1X9I5V7	Streptococcus_phage	1.3e-49	69.4
SQF13379.1\|1771096_1771219_+	phage protein	NA	NA	NA	NA
SQF13380.1\|1771501_1772023_+	phage protein	R9QNB1	Lactococcus_phage	7.4e-21	40.2
SQF13381.1\|1772267_1772600_+	phage protein	NA	NA	NA	NA
SQF13382.1\|1772596_1772791_+	phage protein	NA	NA	NA	NA
SQF13383.1\|1772803_1773166_+	phage protein	NA	NA	NA	NA
SQF13384.1\|1773162_1773492_+	phage protein	NA	NA	NA	NA
SQF13385.1\|1773494_1773767_+	Uncharacterised protein	A0A1X9I5U9	Streptococcus_phage	6.1e-19	60.0
SQF13386.1\|1773767_1774625_+	replication protein	A0A1X9I6L2	Streptococcus_phage	9.0e-125	74.8
SQF13387.1\|1774593_1776282_+	phage/plasmid primase, P4 family, C-terminal domain protein	A0A1X9I717	Streptococcus_phage	1.2e-258	82.0
SQF13388.1\|1776568_1776742_+	Uncharacterised protein	A0A1X9I5U0	Streptococcus_phage	1.9e-10	59.6
SQF13389.1\|1776922_1777432_+	phage protein	A0A1X9I5U4	Streptococcus_phage	4.2e-29	62.5
SQF13390.1\|1777506_1777995_+	phage protein	A0A1X9I5V2	Streptococcus_phage	1.4e-45	54.9
SQF13391.1\|1778398_1778761_+	phage protein	A0A2H4JFS1	uncultured_Caudovirales_phage	8.7e-05	29.9
SQF13392.1\|1778735_1779119_+	phage protein	A0A286QPF1	Streptococcus_phage	1.1e-08	35.5
SQF13393.1\|1779319_1779925_+	phage protein	NA	NA	NA	NA
SQF13394.1\|1780506_1783062_-	DNA mismatch repair protein mutS	A0A1V0SGG8	Hokovirus	5.2e-43	23.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483332

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection