CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483352	Streptococcus pyogenes strain NCTC12052 genome assembly, chromosome: 1	2 crisprs	DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	0	2	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483352_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483352_1

830171-830338

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CRISPRCasFinder

2 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LS483352_1

>merge|LS483352|1|830171-830338|CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACTCAAGAGTGAGTCCAGAACCACCAGCGAATGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACCACTAGACATCTCAACATCTGGAACGGGATGTTTTAGAGCTATGCTATTTTGAATGGTCTCCATTC

>LS483352|1|1|830171-830338|CRISPRCasFinder
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	TCAAGAGTGAGTCCAGAACCACCAGCGAAT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	CACTAGACATCTCAACATCTGGAACGGGAT
GTTTTAGAGCTATGCTATTTTGAATGGTCTCCATTC

Protein	Signature genes	Signature genes Name	Protein_function
LS483352.1\|SQF52076.1\|829104_829416_+\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483352.1\|SQF52078.1\|830981_832814_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LS483352.1\|SQF52082.1\|836578_837004_+\|PTS-system-mannose-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
LS483352.1\|SQF52086.1\|839299_840949_+\|two-component-sensor-kinase	unknown	unknown	gnl\|CDD\|225519
LS483352.1\|SQF52068.1\|818155_819511_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
LS483352.1\|SQF52087.1\|840952_841741_+\|response-regulator	unknown	unknown	gnl\|CDD\|227095
LS483352.1\|SQF52075.1\|828208_829078_+\|cytoplasmic-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LS483352.1\|SQF52071.1\|821478_822231_+\|oleoyl-[acyl-carrier-protein]-hydrolase	unknown	unknown	gnl\|CDD\|226401
LS483352.1\|SQF52074.1\|824105_828209_+\|CRISPR-associated-protein,-Csn1-family	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LS483352.1\|SQF52077.1\|829405_830068_+\|CRISPR-associated-family-protein	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LS483352.1\|SQF52073.1\|822994_823627_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226884
LS483352.1\|SQF52080.1\|834785_835223_+\|methionine-sulfoxide-reductase-B	unknown	unknown	gnl\|CDD\|234692
LS483352.1\|SQF52081.1\|835352_836372_+\|hypothetical-membrane-spanning-protein	unknown	unknown	gnl\|CDD\|225411
LS483352.1\|SQF52072.1\|822230_822995_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|319832
LS483352.1\|SQF52079.1\|833001_834600_+\|LPXTG-motif-cell-wall-anchor-domain-protein	unknown	unknown	gnl\|CDD\|237171
LS483352.1\|SQF52085.1\|838336_839164_+\|phospotransferase-system-(PTS),-enzyme-II-component-D	unknown	unknown	gnl\|CDD\|226239
LS483352.1\|SQF52083.1\|837022_837514_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|225976
LS483352.1\|SQF52069.1\|819634_820276_+\|acetyltransferase-GNAT-Family	unknown	unknown	unknown
LS483352.1\|SQF52070.1\|820272_821469_+\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LS483352.1\|SQF52084.1\|837530_838340_+\|PTS-system,-mannose-specific-IIC-component	unknown	unknown	gnl\|CDD\|226238

Protein	Function_ID	Function_description	E-value
LS483352.1\|SQF52076.1\|829104_829416_+\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.09684e-53
LS483352.1\|SQF52078.1\|830981_832814_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LS483352.1\|SQF52082.1\|836578_837004_+\|PTS-system-mannose-specific-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	5.21553e-31
LS483352.1\|SQF52086.1\|839299_840949_+\|two-component-sensor-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.26478e-77
LS483352.1\|SQF52068.1\|818155_819511_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LS483352.1\|SQF52087.1\|840952_841741_+\|response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	5.79862e-82
LS483352.1\|SQF52075.1\|828208_829078_+\|cytoplasmic-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.0115e-131
LS483352.1\|SQF52071.1\|821478_822231_+\|oleoyl-[acyl-carrier-protein]-hydrolase	gnl\|CDD\|226401	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism].	6.29729e-107
LS483352.1\|SQF52074.1\|824105_828209_+\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LS483352.1\|SQF52077.1\|829405_830068_+\|CRISPR-associated-family-protein	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.6851e-120
LS483352.1\|SQF52073.1\|822994_823627_+\|membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	7.0655e-88
LS483352.1\|SQF52080.1\|834785_835223_+\|methionine-sulfoxide-reductase-B	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	1.80871e-84
LS483352.1\|SQF52081.1\|835352_836372_+\|hypothetical-membrane-spanning-protein	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	5.17879e-104
LS483352.1\|SQF52072.1\|822230_822995_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.30945e-126
LS483352.1\|SQF52079.1\|833001_834600_+\|LPXTG-motif-cell-wall-anchor-domain-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	2.09535e-19
LS483352.1\|SQF52085.1\|838336_839164_+\|phospotransferase-system-(PTS),-enzyme-II-component-D	gnl\|CDD\|226239	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism].	1.55707e-109
LS483352.1\|SQF52083.1\|837022_837514_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	gnl\|CDD\|225976	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism].	8.80769e-55
LS483352.1\|SQF52070.1\|820272_821469_+\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LS483352.1\|SQF52084.1\|837530_838340_+\|PTS-system,-mannose-specific-IIC-component	gnl\|CDD\|226238	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism].	2.10148e-76

>LS483352.1|SQF52077.1|829405_830068_+|CRISPR-associated-family-protein
MNLNFSLLDEPIPLRGGTILVLEDVCVFSKIVQYCYKYEEDSELKFFDRKMKTIKESEIMLVTDILGFDVNSSTILKLIHADLESQFNEKPEVKSMIDKLVATITELIVFECLENELDLEYDEITILELIKSLGVKVETQSDTIFEKCLEILQIFKYLTKKKLLIFVNSGAFLTKDEVASLQEYISLTNLTVLFLEPRELYDFPQYILDEDYFLITKNMV
>LS483352.1|SQF52076.1|829104_829416_+|CRISPR-associated-Cas2-family-protein
MFDMPTDTAEERKAYRKFRKFLLSEGFIMHQFSIYSKLLLNNTANNAMIGRLREHNPNKGNITLLTVTEKQFARMIYLHGERNNCIANSDERLVFLGEAFDES
>LS483352.1|SQF52075.1|828208_829078_+|cytoplasmic-protein
MAGWRTVVVNTHSKLSYKNNHLIFKDAYKTELIHLSEIDILLLETTDIVLSTMLVKRLVDENVLVIFCDDKRLPTAMLMPFYGRHDSSLQLGKQMSWSETVKSQVWTTIIAQKILNQSCYLGACSYFEKSQSIMDLYHGLENFDPSNREGHAARIYFNTLFGNDFSRDLEHPINAGLDYGYTLLLSMFAREVVVSGCMTQFGLKHANQFNQFNFASDIMEPFRPLVDKIVYENRNQPFPKIKRELFTLFSDTFVYNGKEMYLTNIVSDYTKKVVKALNNEGKGVPEFRI
>LS483352.1|SQF52074.1|824105_828209_+|CRISPR-associated-protein,-Csn1-family
MDKKYSIGLDIGTNSVGWAVITDDYKVPSKKLKVLGNTDRHGIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLADSTDKVDLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASRVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNSEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLAKLNREDLLRKQRTFDNGSIPYQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNTSLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDKEMIEERLKKYANLFDDKVMKQLKRRHYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLINDDSLTFKEAIQKAQVSGQGHSLHEQIANLAGSPAIKKGILQTVKIVDELVKVMGHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVRKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAKNIIHLFTLTNLGAPAAFKYFDTTIERNRYKSIKEVLDATLIHQSITGLYETRIDLSQLGGD
>LS483352.1|SQF52073.1|822994_823627_+|membrane-protein
MVENTKLLCSWVWLLALAILITIYSTWLWYPLEVDHLKLEQVVFMSKDAILHNYNGLLNYLTNPFVTRLEFADFHSSADGLKHFADVKWLFHLTQVVFLGLLYPTLKTFTQRLKTKRFWLLQKPLILAALFPLMIGLMASFIGFEHFFTLFHQVLFVGDSSWLFDPLKDPVIWILPEVFFLHCFLFFMIVYEIILWSLVGLARWQRLNVE
>LS483352.1|SQF52072.1|822230_822995_+|haloacid-dehalogenase-like-hydrolase
MPYKGYLIDLDGTIYQGKNRIPAGERFIKRLQERGIPYLLVTNNTTRTPEMVQSMLANQFNVETGIETIYTATMATVDYMNDMNRGKTAYVIGETGLKSAIAAAGYVEELENPAYVVVGLDSQVTYETLAIATLAIQKGALFIGTNPDLNIPTERGLMPGAGALNALLEAATRVKPVFIGKPNAIIMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPEEVPTLPIQPDHVLSSLDEWRL
>LS483352.1|SQF52071.1|821478_822231_+|oleoyl-[acyl-carrier-protein]-hydrolase
MGLSYQEELTLPFELCDVKSDIKLPLLLDYCLMVSGRQSAQLGRSNNNILVDYKLVWIVTDYEITIHRLPHFQETITIETKALSYNKFFCYRQFYIYDQEGCLLVDILAYFALLNPDTRKVATIPEDLVAPFKTDFVKKLHRVPKMPLLEQSIDRDYYVRYFDIDMNGHVNNSKYLDWMYDVLGCAFLKTHQPLKMTLKYVKEVSPGGQITSSYHLDQLTSYHQIISDGQLNAQAMIEWRAIKPIESETD
>LS483352.1|SQF52070.1|820272_821469_+|coproporphyrinogen-III-oxidase
MKNQGKWFIHKNILSPKWYNKTMSKKPTSAYVHIPFCTQICYYCDFSKVFIQNQPVDAYLKALIQEFYSYGIRDLKTLYIGGGTPTAITAKQLEYLLNHLERNLNLDDLEEFTIEANPGDLTPEKIAVLQRSAVNRISLGVQTFNNKQLKQIGRSHNEEQIYSTITNLKAAGFHNISIDLIYALPGQTLDQVKENVAKALALDIPHLSLYSLILEHHTVFMNKMRRGKLNLPTEDLEAEMFEYIISEMEANGFEHYEISNFTKPGFESRHNLMYWDNVEYFGCGAGASGYLNGIRYQNRVPIQHYLKAVEAGNARLNEEVLRKEEMMEEELFLGLRKKTGVSIQRFQEKFGVSFEERYGNIVRELQNQGLLVKDDAFVRMTKKGLFLGDSVAERFILD
>LS483352.1|SQF52069.1|819634_820276_+|acetyltransferase-GNAT-Family
MTKQQIEKLADLLPPFAATLYLDMIPEFQEGYASYVYQTPKQDIQKRRIKQLTKNFERLLDTPSFYVMPVTRKTAEQLLADKGLAYHLLSTVAANQVFAAAVNEDQTLFQVLRNGARVAFVILQEKGEFLEMTLGILETVTENEVPAAIVEAVQTYLLADMQEKLPSLSIMVSQESSKLFYQEQGFVLLAKGCKPGNENDSDVCQLVKYFSKP
>LS483352.1|SQF52068.1|818155_819511_+|phosphoglucosamine-mutase
MGKYFGTDGVRGEANVELTPELAFQLGRFGGYVLSQHETERPKVFVARDTRISGEMLESALIAGLLSVGIEVYKLGVLATPGVSYLVRTEKASAGVMISASHNPALDNGIKFFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEKPNGLNINDGVGSTHPEQLQELVKETGADLGLAFDGDSDRLIAVDETGEIVDGDRIMFIIGKYLSEKGLLAHNTIVTTVMSNLGFHKALDKQGINKAITAVGDRYVVEEMRSSGYNLGGEQSGHVIIMDYNTTGDGQLTAIQLAKVMKETGKSLSELAAEVTIYPQKLVNIRVENSMKERAMEVPAIANIIAKMEDEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRTEIGCDN
>LS483352.1|SQF52078.1|830981_832814_+|GTP-binding-protein-LepA
MNSQDFKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNPAKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVHTTDEDMIEVSNPSEFPDPTRVAFIEEPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDMSEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKIIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKSIGSVEVPQEAFLSVLSMDDDTKK
>LS483352.1|SQF52079.1|833001_834600_+|LPXTG-motif-cell-wall-anchor-domain-protein
MNKTKQNKTKQNKTKQNKTKHSLLCRYGLTSAAALLLTFGGASAVKADDAERSENRNKLIQNLHQQIDNNSKLNVPQVPSSTYTTPSPDTSDLEGDISGIRQYLAQMNEYIKQHKEHDQEWKRELTRGIQQKLLDGKDGRDGAQGLAGERGATGPVGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGKQGDRGEAGPQGPRGEQGDRGKDGKDGQPGKPAPKTPEVPQKPDTAPHTPKTPQIPDHSKDVTPAPQNPSNRGLNKPQTQGGNQFAKTPAAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN
>LS483352.1|SQF52080.1|834785_835223_+|methionine-sulfoxide-reductase-B
METSEELKQRIGDLSYEVTQHAATESPFTGEYDHFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVTNHDDSSYGMRRVEVKSREAGSHLGHVFSDGPKEAGGLRYCINSAALKFIPYDQMEKEGYAQWLTLFDET
>LS483352.1|SQF52081.1|835352_836372_+|hypothetical-membrane-spanning-protein
MSTNLRKLPGLLLCLLLALPAWCLGRLFLIIGAPVFAILLGMLLALFYEHRDKTKEGISFTSKYILQTAVVLLGFGLNLTQVMAVGMQSLPIIVSTIATALLVAYGSQKWLRLDVNTATLVGVGSSICGGSAIAATAPVIKAKDDEVAKAISVIFLFNMLAALLFPSLGQLLGLSNEGFAIFAGTAVNDTSSVTATATAWDAIHHSNTLDGATIVKLTRTLAILPITLGLSLYRAKKEHDIVTEENFSLRKSFPRFILFFLLASLITTLMTSFGVSADVFHSLKTLSKFFIVMAMAAIGLNTNLVKLIKTGGQAILLGAICWVAITLVSLAMQLSLGIW
>LS483352.1|SQF52082.1|836578_837004_+|PTS-system-mannose-specific-transporter-subunit-IIA
MKRKFLIGSHGRLASGLQSSIDILAGMGQALETIDAYVDDSDYTSQIDDFIAGVAADEQGLIFTDLLGGSVNQKMVTAVMNSGKDNIFLITNSNLATLLSLVFLKPGEALTKDDIVTVINESQVQLVDLVPETNSEDDFFD
>LS483352.1|SQF52083.1|837022_837514_+|PTS-system-mannose/fructose-family-transporter-subunit-IIB
MITQIRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEITQMTLKMAVPNGMKLLIRSVEDSIKLFNDPRATDKRIFVIVNSVKDACAIAKEVPDLEAVNVANVGRFDKSDPASKVKVTPSLLLNPEEMAAAKELVSLPELDVFNQVLPSNTKVHLSQLVN
>LS483352.1|SQF52084.1|837530_838340_+|PTS-system,-mannose-specific-IIC-component
MLVPATMAALAVLICFGGNYLTGQSMMERPLVVGLVTGLLLGDMKVGILMGASLEALFLGNVNIGGVIAAEPVTATAMATTFTIISHIDQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFAPMVDKAAAANHQGKLVMLHYGTWIIYYLIIASISFIGILVGSGPVNAFVEHIPQNLMNGLSAAGGLLPAVGFAMLMKLLWTNKLAVFYLLGFVLTAYLKLPAVAVAALGAVICVISSQRDLELDAITRGAINKQTTFDSKESEEEDFFA
>LS483352.1|SQF52085.1|838336_839164_+|phospotransferase-system-(PTS),-enzyme-II-component-D
MTSQDNLTKEDRKMLRSVFWRSWTMNASRTGATQYHAVGVIYTLLPVINRFYKTDKDKAEALVRHTTWFNATMHINNFIMGLVASMEKKNSEDPDFDASAITAVKASLMGPISGVGDSFFWGILRVIAAGIGISLASAGSAMGAVVFLLLYNIPAFIIHYYSLYGGYSVGAGFIKKLYESGGIKIVTKTSSMLGLMMVGSMTASNVKFKTILTVAAKGAKEAASIQDYLDQLFIGIVPLMVTLAAFWLLRKKVNINWIMFGIMFLGIILGLLGIC
>LS483352.1|SQF52086.1|839299_840949_+|two-component-sensor-kinase
MRGEQVEEHFKKQLQDDISRHFSYQSLMLSLLLIGLFIIFSLAPQQLGLYRDINATATRYHRLISKQEALLDDLGKNSLLPFLNKNLSTADLSKHYFHLRHSSQTSPELLLFSPSQDLLFASNPHLGNAFSKSVYIQEVLRAAHPPKTLFKVAMDSEDGHYLMIIKPMIDQNQLMGYAFLVMSGKDFIHPTKTLTSELVIADKLDNTFTFSNREFIASSLDKINSQYLHHYFVFQDNRAFITRKVALQGGLWLYMYRPLIPMVSVMLFSLISSAVIFVILQRKSSGLANRIAAKNSRAINQMVRDMSAISRQEKRRIDLESQDEFQYLSDQINQMVERLQQLHDKTLDLETQKLLFEKRMLEAQFNPHFLYNTLETILITSHYDSALTEKIVIQLTKLLRYSLTDSSKPVLLKDDLSVIESYLVINQVRFEELQYSINLSPDLDSLAVPKLFLLPLIENAIKYGLKERHDVKINIACYYQDDHIIFSVRDNGSGIDAHHQKVIREQLEAGESHHGLINSYRRLKYHFSEVSLVFDQGDKQFNVSYHVKE
>LS483352.1|SQF52087.1|840952_841741_+|response-regulator
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMTAFDMFEATKDQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTIIAKIEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAHFQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYLGQTVKAFKEEHFMKDTDRSKPC

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Crispr_ID: LS483352_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483352_2

1008992-1009093

Orphan

Consensus_repeat	Method
AATAATTGGTATAGTCTAATTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483352_2

>merge|LS483352|2|1008992-1009093|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATACCGATAAAAACAGTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACATAAAATTGGTATAGTCTAATTATA

>LS483352|2|2|1008992-1009093|CRISPRCasFinder
AATAATTGGTATAGTCTAATTATA	CCGATAAAAACAGTATGTTTACAGTATATAATATCCACAATGTCTTGTCAAACA
TAAAATTGGTATAGTCTAATTATA

Protein	Signature genes	Signature genes Name	Protein_function
LS483352.1\|SQF52259.1\|1019044_1019233_-\|phage-protein	unknown	unknown	gnl\|CDD\|269889
LS483352.1\|SQF52241.1\|996707_996956_-\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
LS483352.1\|SQF52251.1\|1009116_1009674_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
LS483352.1\|SQF52255.1\|1015844_1016216_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
LS483352.1\|SQF52253.1\|1011456_1012470_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LS483352.1\|SQF52250.1\|1007126_1008941_-\|glucosamine-fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483352.1\|SQF52247.1\|1005208_1005838_-\|histidine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
LS483352.1\|SQF52244.1\|1001608_1002844_+\|cation-diffusion-facilitator-transporter-family-protein	unknown	unknown	gnl\|CDD\|223131
LS483352.1\|SQF52256.1\|1016215_1016914_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224054
LS483352.1\|SQF52258.1\|1017839_1018454_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223475
LS483352.1\|SQF52243.1\|1000166_1001489_+\|amino-acid-symporter	unknown	unknown	gnl\|CDD\|224040
LS483352.1\|SQF52252.1\|1009891_1011394_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
LS483352.1\|SQF52249.1\|1006595_1006931_-\|phosphonoacetate-hydrolase	unknown	unknown	gnl\|CDD\|225380
LS483352.1\|SQF52257.1\|1016923_1017709_+\|ABC-transporter-permease-protein	unknown	unknown	unknown
LS483352.1\|SQF52260.1\|1019347_1020136_-\|exotoxin-M-precursor	unknown	unknown	gnl\|CDD\|280949
LS483352.1\|SQF52254.1\|1012549_1015660_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|180917
LS483352.1\|SQF52248.1\|1005847_1006489_-\|histidine-transporter-permease	unknown	unknown	gnl\|CDD\|223836
LS483352.1\|SQF52246.1\|1004356_1005193_-\|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
LS483352.1\|SQF52245.1\|1003213_1003987_-\|protein-B	unknown	unknown	gnl\|CDD\|369335
LS483352.1\|SQF52242.1\|997318_999637_-\|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429

Protein	Function_ID	Function_description	E-value
LS483352.1\|SQF52259.1\|1019044_1019233_-\|phage-protein	gnl\|CDD\|269889	cd06603, GH31_GANC_GANAB_alpha, neutral alpha-glucosidase C, neutral alpha-glucosidase AB. This subgroup includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.	0.00788697
LS483352.1\|SQF52241.1\|996707_996956_-\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.43969e-13
LS483352.1\|SQF52251.1\|1009116_1009674_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.3728e-38
LS483352.1\|SQF52255.1\|1015844_1016216_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.0536e-49
LS483352.1\|SQF52253.1\|1011456_1012470_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LS483352.1\|SQF52250.1\|1007126_1008941_-\|glucosamine-fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483352.1\|SQF52247.1\|1005208_1005838_-\|histidine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.61041e-111
LS483352.1\|SQF52244.1\|1001608_1002844_+\|cation-diffusion-facilitator-transporter-family-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	5.43501e-96
LS483352.1\|SQF52256.1\|1016215_1016914_+\|ABC-transporter-family-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.0817e-63
LS483352.1\|SQF52258.1\|1017839_1018454_-\|membrane-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.14841e-31
LS483352.1\|SQF52243.1\|1000166_1001489_+\|amino-acid-symporter	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
LS483352.1\|SQF52252.1\|1009891_1011394_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
LS483352.1\|SQF52249.1\|1006595_1006931_-\|phosphonoacetate-hydrolase	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	7.28705e-64
LS483352.1\|SQF52260.1\|1019347_1020136_-\|exotoxin-M-precursor	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	2.95713e-08
LS483352.1\|SQF52254.1\|1012549_1015660_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|180917	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.	0
LS483352.1\|SQF52248.1\|1005847_1006489_-\|histidine-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.99371e-71
LS483352.1\|SQF52246.1\|1004356_1005193_-\|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.58337e-109
LS483352.1\|SQF52245.1\|1003213_1003987_-\|protein-B	gnl\|CDD\|369335	pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of several bacterial CAMP factor (Cfa) proteins which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin).	2.06073e-97
LS483352.1\|SQF52242.1\|997318_999637_-\|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0

>LS483352.1|SQF52250.1|1007126_1008941_-|glucosamine-fructose-6-phosphate-aminotransferase
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVANANQTNLIKSVGRIADLRAKIGIDVAGSTGIGHTRWATHGQSTEDNAHPHTSQTGRFVLVHNGVIENYLHIKTEFLAGHDFKGQTDTEIAVHLIGKFVEEDKLSVLEAFKKALSIIEGSYAFALMDSQATDTIYVAKNKSPLLIGLGEGYNMVCSDAMAMIRETSEFMEIHDKELVILTKDKVTVTDYDGKELIRDSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRQLISTYADETGNVQVDPAIITSIQEADRLYILAAGTSYHAGFATKNMLEQLTDTPVELGVASEWGYHMPLLSKKPMFILLSQSGETADSRQVLVKANAMGIPSLTVTNVPGSTLSRESTYTMLIHAGPEIAVASTKAYTAQIAALAFLAKAVGEANGKQEALDFNLVHELSLVAQSIEATLSEKDLVAEKVQALLTTTRNAFYIGRGNDYYVAMEAALKLKEISYIQCEGFAAGELKHGTISLIEEDTPVIALISSSQLVASHTRGNIQEVAARGAHVLTVVEEGLDREGDDIIVNKVHPFLAPIAMVIPTQLIAYYASLQRGLDVDKPRNLAKAVTVE
>LS483352.1|SQF52249.1|1006595_1006931_-|phosphonoacetate-hydrolase
MSLPNCLQCQSEYIYEDGLLLICPMCAFEWTPGEEATEEEGLVVLDSNGVRLSDGDTITVVKDLKVKGAPKDLKQGTRVKNIRLVEGDHNIDCKIDGFGAMKLKSEFVKKI
>LS483352.1|SQF52248.1|1005847_1006489_-|histidine-transporter-permease
MTYIQQVLPSLLDGALVTLQVFFIVIILSIPLGAILAFLMKIPFKPLQWFLTLYVWMMRGTPLLLQLIFFYYVLPSVGISFDRMPAAILAFTLNYAAYFAEIFRGGIEAIPKGQYEAAKVLKLKPLQTIRYIILPQVFKIVLPSVFNEVINLVKDSSLVYVLGVGDLLLASKTAANRDATLAPMFIAGLIYLLLIGLVTIISKQVEKRFNYYQ
>LS483352.1|SQF52247.1|1005208_1005838_-|histidine-ABC-transporter-ATP-binding-protein
MLELKNISKQFGQKTIFDGFNLTVQDGEVLSLVGPSGGGKTTLLRMLAGLESIDSGQVFYNGEDVGIDHLENRNLLGFVFQDFQLFPHLTVLDNLTLSPTITMGKQKSDAKEKALDLLARLGLKEHAQVYPYSLSGGQKQRVALARAMMIDPQIIGYDEPTSALDPELRQTVEALIVQNREMGITQIVVTHDLVFAEAISDRIIRVNPK
>LS483352.1|SQF52246.1|1004356_1005193_-|polar-amino-acid-ABC-uptake-transporter-substrate-binding-protein
MIIKKRTVAILAIASSFFLVACQATKGLKSGDAWGVYQKQKSITVGFDNTFVPMGYKDESGKCKGFDIDLAKEVFHQYGLKVNFQAINWDMKEAELNNGKIDVIWNGYSITKDRQEKVAFTDSYMRNEQIIVVKKRSDIKTISDMKHKVLGAQSASSGYDSLLRTPKLLKDFIKNKDANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMIPTTFENEAFSVGLRKEDKTLQAKINRAFRVLYQNGKFQAISEKWFGDDVATANIKS
>LS483352.1|SQF52245.1|1003213_1003987_-|protein-B
MKPKHLLCLSTVVAGLALFSTMTHSVLADDASNPDTILMNNNQANLQRDALVQKLDEGHQQLEAIKHEAKGTDIEATVNKAIDAVDHMKSSIRFNTETIYDFSSIGARVEALSDAIKAIVFSTTQLTHKVEKAHTDMGFAITKLVIRIIDPFASVDAIKAQVQEIKALEEKVINYPDLQPTDRATIYTKAKLNKAIWNTRLERDKKVLGIKPFDVYNRLNKAITHAVGVQLNPTTTVQQVDDEVIAVQNALETALKS
>LS483352.1|SQF52244.1|1001608_1002844_+|cation-diffusion-facilitator-transporter-family-protein
MTQDPIANLKLARKGPIVSIIVYLLLSVAKLLAGYLLNASSLIADGFNNLSDIVGNVALLIGLHLASQPADANHKFGHWKIEDLSSLVTSFIMFLVGFQVLIHTIKSIFSGQQVDIDPLGAIVGIVSAFVMLGVYVFNKRLSKRVKSSALVAASKDNLADAVTSIGTSIAIIAASLHLPVIDHIAAMIITFFILKTAFDIFMESSFSLSDGFDSRHLKKYEKAILEIPKIVSVKSQRARTYGSNVYLDIVLEMNPDLSVYESHSITEKVEQLLSDQFSIYDIDIHVEPAMIPEEEIFDNVAKKLYRYEKLILSKVPDYDHYIAKSFQLIDANGQTVNYEQFLNQEIYYPSNFNHFQIESISQKTMLVTYQLNGNQRTSIWRRHESWSLLFHQITPIAKKQLHHTHYRIVKM
>LS483352.1|SQF52243.1|1000166_1001489_+|amino-acid-symporter
MIALVKLIDNLVWGPPLLILLVGTGIYLTSRLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAILFAGSGILVALFGIGTFAQVNSITSSLGHSFGLSPQIVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVFQSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLGSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFVLMVGLGGFLKLELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK
>LS483352.1|SQF52242.1|997318_999637_-|DNA-helicase-II-/-ATP-dependent-DNA-helicase-PcrA
MNPLLNGMNDRQAQAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPATKDTLIATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKQLNIDPKKWNERSILGTISNAKNDLLDEKGYEAQAADMYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDANPDVLAYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPDAKVVLLEENYRSTKKILQAANDVINNNRNRRPKKLWTQNADGEQLVYYRANDERDEAVFVASTISNMSQELGKNFKDFAVLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDLIAYLTIVANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAIMDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKNFDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRASEDPDELEEERRLAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVRFSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLPFGSNSSVEEVTWQIGDIAHHKKWGDGTVLEVSGSGKTMELKIKFPEVGLKKLLASVAPIEKK
>LS483352.1|SQF52241.1|996707_996956_-|transglycosylase-associated-family-protein
MGLIWTLIVGALIGVIAGALTKKGGSMGWIANIAAGLVGSSVGQALLGSWGPSLAGMSLIPSVIGAVIVVMITSFVLNKTNN
>LS483352.1|SQF52251.1|1009116_1009674_-|signal-peptidase-I
MVKRDFIRNILLLLIVIIGAILLRIFVFSTFKVSPETANTYLKSGDLVTIKKNIQPKYKDFVVYRVGKKDYVSRVIAVEGDSVTYMDDIFYLNNMVESQAYLEKMKAHYLNHAPFGTLYTDDFTVATITADKYQKVPKGKYLLLNDNRKNTNDSRRFGLINASQIKGLVTFRVLPLSDFGFVEVE
>LS483352.1|SQF52252.1|1009891_1011394_-|pyruvate-kinase
MNKRVKIVATLGPAVEIRGGKKYGEDGYWAGQLDVEESAKKIAELIEAGANVFRFNFSHGDHKEQGDRMATVRLAEEIARQKVGFLLDTKGPEMRTELFADDAKEFSYVTGEKIRVATTQGIQSTRDVIALNVAGSLDIYDEVEVGHTILIDDGKLGLKVIDKDIATRQFIVEVENDGIIAKQKGVNIPNTKIPFPALAERDNADIRFGLEQGLNFIAISFVRTAKDVEEVREICRETGNDHVQLFAKIENQQGIDNLDEIIEAADGIMIARGDMGIEVPFEMVPVFQKMIITKVNAAGKAVITATNMLETMTEKPRATRSEVSDVFNAVIDGTDATMLSGESANGKYPVESVRTMATIDRNAQTLLNEYGRLDSSAFPRTNKTDVIASAVKDATHSMDIKLVVTITETGNTARAISKFRPDADILAVTFDEKVQRALMINWGVIPVLAEKPASTDDMFEVAERVAVEAGLVQSGDNIVIVAGVPVGTGGTNTMRVRTVK
>LS483352.1|SQF52253.1|1011456_1012470_-|6-phosphofructokinase
MKRIAVLTSGGDAPGMNAAIRAVVRKAISEGMEVYGINRGYAGMVDGDIFPLGSKEVGDKISRGGTFLYSARYPEFAQLEGQLAGIEQLKKHGIEGVVVIGGDGSYHGAMRLTEHGFPAVGIPGTIDNDIAGTDYTIGFDTAVNTAVEAIDKLRDTSSSHGRTFVVEVMGRNAGDIALWAGIASGADQIIVPEEEFDIEKVASTIQYDFEHKGKNHHIIVLAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDRVIASWMGSHAVELLKEGKGGLAVGIHNEELVESPILGTAEEGALFSLTEEGKIIVNNPHKARLDFAALNRSLSQ
>LS483352.1|SQF52254.1|1012549_1015660_-|DNA-polymerase-III-subunit-alpha
MFAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPVLGLEVEILYQERQVLLNLIAQNTQGYHQLLKISTAKMSGKLHMDYLCQHLEGIAVIIPSKGWSDTLVVPFDYYIGVDQYTDLSHMDSKRQLIPLRTVRYFAQDDMETLHMLHAIRDNLSLAETPVVESDQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPHFNRDKSAKQELQELTEAGLKEKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGFKDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPLKSGDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQTLALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKMEEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYDIMMNYSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRDFAYWIIEQRPFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGLLVFVNELGSLFSDSSFSWVDAKDYSATEKYSLEQEIVGVGMSKHPLIDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRIKERDHRLQMVCQQVQMAISQKYWLLVENHQFDSQISEILGAFPGTTPVVIHYQKNKETIALTKIQVHVTENLKEKLRPFVLKTVFR
>LS483352.1|SQF52255.1|1015844_1016216_+|GntR-family-transcriptional-regulator
MSWKFDEKSPIYAQIAQHVMMQIISQEIKSGDQLPTVREYAEIAGVNPNTMQRAFTELEREGMVYSQRTAGRFVTDDQKLIARKRRELAISELESFITNMTKMGFSHTEIIPVLTSFLKEDSQ
>LS483352.1|SQF52256.1|1016215_1016914_+|ABC-transporter-family-protein
MAHLLQLHHVSKSYREKKAIDDLTITIPNGKIIGLLGPNGSGKTTLIKLINGLLQPNKGEIVIDGYRPCVETKKIISYLPDTTYLNENMRIKDMLEFFSDFYSDFDNSKATSLLRDLELDPEDRFKTLSKGNKEKVQLILVMSRKARLYVLDEPIGGVDPAARDYILKTIINSYCENASVIISTHLISDIEPILDEVIFLKQGRLFLSGNADDLRQEYQQSIDSLFRETYKV
>LS483352.1|SQF52257.1|1016923_1017709_+|ABC-transporter-permease-protein
MFGKLLKYEFRSIGKWYFALNAFVIAIAAILSFTIKLFAQSNSDGLFGVLTNKMLPLTLGLTFGSLIAGSLLSTLLIIIKRFSKSVFGREGYLTLTLPVNSHQIILSKLLASFICSVFNTIILAFAIAIVIVPMFNINELLEGFFNSFKMDYFINMLTVLAYVLLSTFTSILLIYLSISIGQLFSNRRGLMAFIAYFILVILISVAATYVHSHIFNINTSADSFPFTEQKTIYLLILEQFIEMIMFYLATNFIIKNKLNLQ
>LS483352.1|SQF52258.1|1017839_1018454_-|membrane-protein
MTKRNSKAYILWQKIIKILGIIALIGTFFLAFWLYRLGILNDSNALKDLVQRYRLWGPFVFIVVQIIQIVFPVIPGGLTTVAGFLIFGPVTGFIYNYVGIIIGSIVLFLLVKTYGRKFILLFVNDKTFYKYERRLETPGYEKLFIFCMASPVSPADIMVMITGLTDMSLKRFVTILLITKPISIIGYSYLFIFGKDVISWFLQH
>LS483352.1|SQF52259.1|1019044_1019233_-|phage-protein
MLTYDEFKQAIDDGYIVGDTVMIVRKNGQIFDYVLPHEEARNGEVVTEEKVEEVMVELDYIK
>LS483352.1|SQF52260.1|1019347_1020136_-|exotoxin-M-precursor
MRIFLHQNCRLVNMSTTFFIVVLSLMVFSVRMVSAEGTINIKDIYPPRWDVDKTLSPTTLREIYNRDTIKKVNKPITGKRGTQVIMDAQHKTKVWEFDDYNFIISSNLHPSVEGKFNVGDNVDVFGLALSAEVFSKDQIHSINGGLVKVNERKGAGKTIYMNVFIDGHKKDDTSKYKITFEKSPVTFQEVDVRLRKSFMLNDEIKLYQYDSKVLSGNWEFHGSGEKEEGADLFKYPDYRYNNLIDIDKKSHIDVYLFTNKEN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MK448972	Streptococcus phage Javan520, complete genome	12869-12898	0	1.0
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MK448763	Streptococcus phage Javan451, complete genome	13647-13676	0	1.0
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MK448777	Streptococcus phage Javan491, complete genome	13529-13558	0	1.0
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448944	Streptococcus phage Javan452, complete genome	12352-12381	1	0.967
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448672	Streptococcus phage Javan117, complete genome	7933-7962	1	0.967
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448849	Streptococcus phage Javan128, complete genome	7837-7866	1	0.967
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448850	Streptococcus phage Javan132, complete genome	12662-12691	1	0.967
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MK448845	Streptococcus phage Javan118, complete genome	14951-14980	2	0.933
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448675	Streptococcus phage Javan129, complete genome	12142-12171	2	0.933
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448673	Streptococcus phage Javan119, complete genome	11438-11467	2	0.933
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448845	Streptococcus phage Javan118, complete genome	9816-9845	3	0.9
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448771	Streptococcus phage Javan481, complete genome	8088-8117	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448973	Streptococcus phage Javan522, complete genome	9993-10022	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448775	Streptococcus phage Javan489, complete genome	11977-12006	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448969	Streptococcus phage Javan514, complete genome	10959-10988	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448794	Streptococcus phage Javan525, complete genome	10172-10201	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448972	Streptococcus phage Javan520, complete genome	8013-8042	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448763	Streptococcus phage Javan451, complete genome	9206-9235	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448774	Streptococcus phage Javan487, complete genome	8073-8102	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448778	Streptococcus phage Javan493, complete genome	10008-10037	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448773	Streptococcus phage Javan485, complete genome	10959-10988	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448958	Streptococcus phage Javan486, complete genome	10313-10342	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448777	Streptococcus phage Javan491, complete genome	8304-8333	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448765	Streptococcus phage Javan459, complete genome	10172-10201	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK449010	Streptococcus phage Javan90, complete genome	10522-10551	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	MK448833	Streptococcus phage Javan87, complete genome	10522-10551	4	0.867
LS483352_1	1.2\|830273\|30\|LS483352\|CRISPRCasFinder	830273-830302	30	NZ_CP010870	Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6001, complete sequence	108515-108544	6	0.8
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	291729-291758	8	0.733
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	JQ692107	Vibrio vulnificus phage SSP002, complete genome	39080-39109	8	0.733
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MN215888	Vibrio phage vB_VpaS_HCMJ, complete genome	39192-39221	8	0.733
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MF754116	Vibrio phage vB_VpaS_KF6, complete genome	37281-37310	8	0.733
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MF754115	Vibrio phage vB_VpaS_KF5, complete genome	39198-39227	8	0.733
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MG602476	Vibrio phage VVP001, complete genome	35844-35873	8	0.733
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	MH925090	UNVERIFIED: Vibrio phage ValLY_3, complete genome	32119-32148	8	0.733
LS483352_1	1.1\|830207\|30\|LS483352\|CRISPRCasFinder	830207-830236	30	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	116915-116944	10	0.667

1. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 0, identity: 1.0

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
tcaagagtgagtccagaaccaccagcgaat	Protospacer
******************************

2. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 0, identity: 1.0

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
tcaagagtgagtccagaaccaccagcgaat	Protospacer
******************************

3. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 0, identity: 1.0

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
tcaagagtgagtccagaaccaccagcgaat	Protospacer
******************************

4. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 1, identity: 0.967

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatctcaacatctggaacgggat	Protospacer
*.****************************

5. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.967

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatctcaacatctggaacgggat	Protospacer
*.****************************

6. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 1, identity: 0.967

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatctcaacatctggaacgggat	Protospacer
*.****************************

7. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 1, identity: 0.967

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatctcaacatctggaacgggat	Protospacer
*.****************************

8. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 2, identity: 0.933

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
tcaagagtgagaccagaaccaccagcaaat	Protospacer
*********** **************.***

9. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 2, identity: 0.933

cactagacatctcaacatctggaacgggat	CRISPR spacer
cactagacatctcaacatctggaacaggtt	Protospacer
*************************.** *

10. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 2, identity: 0.933

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatttcaacatctggaacgggat	Protospacer
*.********.*******************

11. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 3, identity: 0.9

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatttcaacatctggaacgggtt	Protospacer
*.********.***************** *

12. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448771 (Streptococcus phage Javan481, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

13. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

14. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

15. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448969 (Streptococcus phage Javan514, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

16. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

17. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

18. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

19. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448774 (Streptococcus phage Javan487, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

20. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

21. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448773 (Streptococcus phage Javan485, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

22. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448958 (Streptococcus phage Javan486, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

23. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacaggtt	Protospacer
*..**********************.** *

24. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgttagacatctcaacatctggaacagggt	Protospacer
*..**********************.**.*

25. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatctcaacatctggtacaggtt	Protospacer
*.******************** **.** *

26. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 4, identity: 0.867

cactagacatctcaacatctggaacgggat	CRISPR spacer
cgctagacatctcaacatctggtacaggtt	Protospacer
*.******************** **.** *

27. spacer 1.2|830273|30|LS483352|CRISPRCasFinder matches to NZ_CP010870 (Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6001, complete sequence) position: , mismatch: 6, identity: 0.8

cactaga----catctcaacatctggaacgggat	CRISPR spacer
----agagttccatctcaagatctggcacgggat	Protospacer
    ***    ******** ****** *******

28. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 8, identity: 0.733

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
tcaagagtcattccagaaccaccaaatgcc	Protospacer
******** * *************.  . .

29. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to JQ692107 (Vibrio vulnificus phage SSP002, complete genome) position: , mismatch: 8, identity: 0.733

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
gtaagggtgagtccagaacaaccagacgac	Protospacer
 .***.************* *****  .*.

30. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MN215888 (Vibrio phage vB_VpaS_HCMJ, complete genome) position: , mismatch: 8, identity: 0.733

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
gtaagggtgagtccagaacaaccagacgac	Protospacer
 .***.************* *****  .*.

31. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MF754116 (Vibrio phage vB_VpaS_KF6, complete genome) position: , mismatch: 8, identity: 0.733

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
gtaagggtgagtccagaacaaccagacgac	Protospacer
 .***.************* *****  .*.

32. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MF754115 (Vibrio phage vB_VpaS_KF5, complete genome) position: , mismatch: 8, identity: 0.733

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
gtaagggtgagtccagaacaaccagacgac	Protospacer
 .***.************* *****  .*.

33. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MG602476 (Vibrio phage VVP001, complete genome) position: , mismatch: 8, identity: 0.733

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
gtaagggtgagtccagaacaaccagacgac	Protospacer
 .***.************* *****  .*.

34. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to MH925090 (UNVERIFIED: Vibrio phage ValLY_3, complete genome) position: , mismatch: 8, identity: 0.733

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
gtaagggtgagtccagaacaaccagacgac	Protospacer
 .***.************* *****  .*.

35. spacer 1.1|830207|30|LS483352|CRISPRCasFinder matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.667

tcaagagtgagtccagaaccaccagcgaat	CRISPR spacer
gttcagccgaatccagaaccaccagcgaag	Protospacer
 .  .. .**.******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36590 : 48952

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF51309.1\|36590_40364_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	6.1e-40	27.0
SQF51310.1\|40524_41979_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.7e-54	32.9
SQF51311.1\|42006_43029_+	phosphoribosylaminoimidazole synthetase	A0A0E3FGG1	Synechococcus_phage	9.0e-63	41.4
SQF51312.1\|43196_43751_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-25	36.1
SQF51313.1\|43934_45482_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	E3SNU8	Prochlorococcus_phage	3.4e-45	52.4
SQF51314.1\|45540_46665_-	bacterial SH3 domain protein	F8HGP2	Streptococcus_phage	7.7e-07	28.6
SQF51315.1\|46827_48183_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
SQF51316.1\|48460_48952_+	phosphoribosyl carboxyaminoimidazole mutase	A0A2P0VNU7	Tetraselmis_virus	3.2e-18	42.3

DBSCAN-SWA_2

88112 : 104598

Streptococcus_phage(62.5%)

integrase,tRNA

attL 83484:83498|attR 99475:99489

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
83484:83498	attL	NA	NA	NA	NA
SQF51361.1\|88112_88832_+	ABC transporter	G3M9Y6	Bacillus_virus	1.3e-15	26.8
SQF51362.1\|88824_89640_+	zinc ABC transporter permease	NA	NA	NA	NA
SQF51363.1\|89679_90063_-	HIT domain-containing protein	NA	NA	NA	NA
SQF51364.1\|90226_91372_-\|integrase	Phage integrase: site-specific recombinase	A0A1X9I5Y5	Streptococcus_phage	5.1e-99	50.0
SQF51365.1\|92631_93399_-	repressor protein	Q76TK4	Streptococcus_pyogenes_phage	2.5e-73	84.9
SQF51366.1\|93552_93759_+	Cro/CI family phage transcriptional regulator	X2KUC2	Streptococcus_phage	2.4e-07	47.0
SQF51367.1\|93792_93993_+	phage transcriptional repressor	A0A1S5SE31	Streptococcus_phage	1.0e-10	55.0
SQF51368.1\|94013_94421_+	phage protein	A0A1X9I5V7	Streptococcus_phage	7.7e-50	70.1
SQF51369.1\|94434_95052_+	pRha family phage regulatory protein	A0A159B6D5	Gordonia_phage	2.2e-11	38.8
SQF51370.1\|95296_95629_+	phage protein	NA	NA	NA	NA
SQF51371.1\|95625_95847_+	Uncharacterised protein	NA	NA	NA	NA
SQF51372.1\|95849_96041_+	phage protein	NA	NA	NA	NA
SQF51373.1\|96052_96382_+	phage protein	NA	NA	NA	NA
SQF51374.1\|96384_96657_+	Uncharacterised protein	A0A1X9I5U9	Streptococcus_phage	6.1e-19	60.0
SQF51375.1\|96657_97515_+	replication protein	A0A1X9I6L2	Streptococcus_phage	7.6e-124	74.5
SQF51376.1\|97483_99172_+	phage/plasmid primase, P4 family, C-terminal domain protein	A0A1X9I717	Streptococcus_phage	2.5e-259	82.1
SQF51377.1\|99458_99632_+	phage protein	A0A1X9I5U0	Streptococcus_phage	3.9e-11	61.4
99475:99489	attR	NA	NA	NA	NA
SQF51378.1\|99637_99811_+	phage protein	NA	NA	NA	NA
SQF51379.1\|99812_100322_+	phage protein	A0A1X9I5U4	Streptococcus_phage	5.5e-29	62.5
SQF51380.1\|100395_100884_+	phage protein	A0A1X9I5V2	Streptococcus_phage	2.0e-44	54.3
SQF51381.1\|101289_101652_+	phage protein	A0A2H4JFS1	uncultured_Caudovirales_phage	3.0e-05	29.9
SQF51382.1\|101626_102010_+	phage protein	Q938L8	Temperate_phage	4.9e-14	42.5
SQF51383.1\|102218_102854_+	phage protein	NA	NA	NA	NA
SQF51384.1\|102816_103068_+	Uncharacterised protein	NA	NA	NA	NA
SQF51385.1\|103338_104598_-\|tRNA	tyrosyl-tRNA synthetase	K4F5T3	Cronobacter_phage	2.6e-72	40.0

DBSCAN-SWA_3

338198 : 344232

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF51595.1\|338198_338834_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.2e-65	63.4
SQF51596.1\|338851_339727_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.3e-65	44.5
SQF51597.1\|339745_339985_+	Tpl protein	NA	NA	NA	NA
SQF51598.1\|340389_340713_+	DNA replication initiation control protein	M1PFV3	Streptococcus_phage	1.3e-28	59.4
SQF51599.1\|340717_341581_+	corrin/porphyrin methyltransferase	M1PLC5	Streptococcus_phage	5.5e-114	74.3
SQF51600.1\|341607_342000_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF51601.1\|342046_342676_-	copper homeostasis protein	NA	NA	NA	NA
SQF51602.1\|342974_343331_+	arsenate reductase	M1PLC0	Streptococcus_phage	1.8e-39	65.0
SQF51603.1\|343404_344232_-	3'-exo-deoxyribonuclease	M1PSC0	Streptococcus_phage	1.7e-128	79.9

DBSCAN-SWA_4

352575 : 433522

Bacillus_phage(12.5%)

transposase,protease,bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF51607.1\|352575_354573_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SHR2	Klosneuvirus	1.3e-86	35.0
SQF51608.1\|355067_356081_+	ribonucleotide-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.5e-97	53.7
SQF51609.1\|356084_356573_+	nrdI protein	R4JF54	Bacillus_phage	1.3e-11	37.5
SQF51610.1\|356539_358720_+	ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.5e-171	43.3
SQF51611.1\|358923_359676_-	ADP-ribosyltransferase	NA	NA	NA	NA
SQF51612.1\|360133_360538_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF51613.1\|360725_360977_+	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF51614.1\|361139_361670_-	phage protein	NA	NA	NA	NA
SQF51615.1\|362028_362265_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA
SQF51616.1\|362257_362956_+	3-ketoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.2e-10	25.2
SQF51617.1\|363031_363991_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
SQF51618.1\|364323_365661_+	phosphoglycerate transporter protein	NA	NA	NA	NA
SQF51619.1\|365833_367216_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	A0A2K9L4K9	Tupanvirus	1.4e-31	36.0
SQF51620.1\|367246_367801_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA
SQF51621.1\|367800_368052_+	membrane protein	NA	NA	NA	NA
SQF51622.1\|368070_368766_+	MTA/SAH nucleosidase	NA	NA	NA	NA
SQF51623.1\|368916_369258_+	Uncharacterised protein	NA	NA	NA	NA
SQF51624.1\|369357_370005_-	metalloregulator ScaR	NA	NA	NA	NA
SQF51625.1\|370150_371083_+	manganese-binding protein	NA	NA	NA	NA
SQF51626.1\|371146_371872_+	manganese transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.4e-17	32.6
SQF51627.1\|371872_372727_+	ABC 3 transport family protein	NA	NA	NA	NA
SQF51628.1\|372874_373681_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.5e-20	36.6
SQF51629.1\|373897_376303_+	cell division protein FtsK	S5VNE3	Mycobacterium_phage	3.8e-88	51.7
SQF51630.1\|376372_376726_-	integral membrane protein	NA	NA	NA	NA
SQF51631.1\|376969_377395_+	50S ribosomal protein L11	NA	NA	NA	NA
SQF51632.1\|377500_378190_+	50S ribosomal protein L1	NA	NA	NA	NA
SQF51633.1\|378511_379240_+	uridylate kinase	NA	NA	NA	NA
SQF51634.1\|379268_379826_+	ribosome recycling factor	NA	NA	NA	NA
SQF51635.1\|379934_380792_+	s1 RNA binding domain	NA	NA	NA	NA
SQF51636.1\|380864_381374_+	methionine sulfoxide reductase A	NA	NA	NA	NA
SQF51637.1\|381370_381586_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQF51638.1\|381741_382923_+	lysM domain protein	A0A0E3XB61	Gordonia_phage	5.6e-16	40.5
SQF51639.1\|383236_385009_+	myosin-cross-reactive antigen	NA	NA	NA	NA
SQF51640.1\|385167_386220_+	phosphate starvation-induced protein	W8D063	Erwinia_phage	1.2e-46	50.0
SQF51641.1\|386265_386841_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA
SQF51642.1\|386999_387497_+\|protease	metalloprotease	NA	NA	NA	NA
SQF51643.1\|387477_387885_+	diacylglycerol kinase	NA	NA	NA	NA
SQF51644.1\|388004_388901_+	GTP-binding protein Era	NA	NA	NA	NA
SQF51645.1\|388921_389398_+	phosphohydrolase	NA	NA	NA	NA
SQF51646.1\|389894_390089_-	Uncharacterised protein	NA	NA	NA	NA
SQF51647.1\|390502_390733_+	truncated SilB	NA	NA	NA	NA
SQF51648.1\|391228_391939_-\|bacteriocin	bacteriocin processing peptidase	NA	NA	NA	NA
SQF51649.1\|392043_392280_-\|bacteriocin	bacteriocin processing peptidase	NA	NA	NA	NA
SQF51650.1\|392577_392802_+	blpU	NA	NA	NA	NA
SQF51651.1\|392779_392956_+	Uncharacterised protein	NA	NA	NA	NA
SQF51652.1\|393041_393269_+	Uncharacterised protein	NA	NA	NA	NA
SQF51653.1\|394168_394399_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide	NA	NA	NA	NA
SQF51654.1\|394447_394765_+	role in replication	NA	NA	NA	NA
SQF51655.1\|395144_395600_+\|transposase	transposase	U5P429	Shigella_phage	3.8e-13	34.0
SQF51656.1\|395754_395970_+	Transposase	U5P429	Shigella_phage	7.0e-10	45.5
SQF51657.1\|396183_396795_+\|transposase	truncated transposase	A0A1X9I5T2	Streptococcus_phage	1.1e-103	91.1
SQF51658.1\|396745_397678_+\|transposase	ISSag8, transposase	A0A1X9I5T2	Streptococcus_phage	6.8e-142	88.5
SQF51659.1\|397912_398662_+	response regulator	A0A1V0E029	Clostridioides_phage	2.1e-21	28.0
SQF51660.1\|398662_399997_+	two-component system, AgrA family, sensor histidine kinase AgrC	NA	NA	NA	NA
SQF51661.1\|400144_400270_-	COMC family	NA	NA	NA	NA
SQF51662.1\|400346_401459_-	Transport protein comB	NA	NA	NA	NA
SQF51663.1\|401722_403876_-	Bacteriocin processing peptidase / Bacteriocin export ABC transporter	W8CYL7	Bacillus_phage	5.7e-43	28.3
SQF51664.1\|404327_404750_+\|transposase	transposase, Mutator family protein	NA	NA	NA	NA
SQF51665.1\|404746_404896_+\|transposase	IS1191 transposase	NA	NA	NA	NA
SQF51666.1\|405201_405447_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	NA	NA	NA	NA
SQF51667.1\|405461_405644_+\|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	NA	NA	NA	NA
SQF51668.1\|405952_406102_-\|transposase	IS1191 transposase	NA	NA	NA	NA
SQF51669.1\|406098_406521_-\|transposase	transposase, Mutator family protein	NA	NA	NA	NA
SQF51670.1\|406838_407066_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQF51671.1\|407078_407279_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF51672.1\|407817_408099_+	Uncharacterised protein	NA	NA	NA	NA
SQF51673.1\|408292_408694_+	Uncharacterised protein	NA	NA	NA	NA
SQF51674.1\|408947_410015_+	Uncharacterised protein	NA	NA	NA	NA
SQF51675.1\|410116_410506_+	histidine kinase	NA	NA	NA	NA
SQF51676.1\|410775_411045_-	Uncharacterised protein	NA	NA	NA	NA
SQF51677.1\|412115_412982_+	transcriptional regulator	NA	NA	NA	NA
SQF51678.1\|413153_413981_+	formamidopyrimidine-DNA glycosylase	A0A127AWE5	Bacillus_phage	5.1e-16	27.5
SQF51679.1\|413977_414571_+	dephospho-CoA kinase	NA	NA	NA	NA
SQF51680.1\|414760_416263_+	ATPase	A0A248XCZ8	Klebsiella_phage	1.5e-74	41.3
SQF51681.1\|416408_417578_+	major facilitator superfamily protein	NA	NA	NA	NA
SQF51682.1\|417766_418003_+	preprotein translocase subunit	NA	NA	NA	NA
SQF51683.1\|418096_420430_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.5e-89	39.6
SQF51684.1\|420432_420900_+	ssrA-binding protein	W5RAM5	Staphylococcus_phage	5.7e-41	57.0
SQF51685.1\|420905_421625_+	glutamine cyclotransferase	NA	NA	NA	NA
SQF51686.1\|421741_422389_-	pyroglutamyl-peptidase I	NA	NA	NA	NA
SQF51687.1\|422438_423365_-	membrane protein	NA	NA	NA	NA
SQF51688.1\|423364_424048_-	membrane protein	NA	NA	NA	NA
SQF51689.1\|424258_425185_-	glucosyl transferase family 2	V5USA4	Oenococcus_phage	3.4e-77	47.5
SQF51690.1\|425329_425707_-	bleomycin resistance protein	NA	NA	NA	NA
SQF51691.1\|425717_426383_-	NAD(P)H nitroreductase yfkO	NA	NA	NA	NA
SQF51692.1\|426431_427517_-	Xaa-Pro dipeptidase	NA	NA	NA	NA
SQF51693.1\|427690_428692_+	Catabolite control protein A	C6ZCU4	Enterobacteria_phage	3.6e-24	28.5
SQF51694.1\|428822_429821_+	glycosyltransferase	NA	NA	NA	NA
SQF51695.1\|429822_431157_+	glycosyl transferases group 1 family protein	NA	NA	NA	NA
SQF51696.1\|431578_433522_+\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	4.7e-121	38.7

DBSCAN-SWA_5

463585 : 501779

Streptococcus_phage(25.0%)

transposase,portal,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF51726.1\|463585_464038_+\|portal	portal protein	E4ZFM3	Streptococcus_phage	5.7e-62	84.9
SQF51727.1\|464103_464412_+	prophage minor structural protein	Q6DMT0	Streptococcus_phage	5.7e-21	64.9
SQF51728.1\|464829_465816_+	huntington interacting protein HYPE	D7RWK9	Brochothrix_phage	3.2e-09	24.4
SQF51729.1\|466186_466516_+\|transposase	transposase	NA	NA	NA	NA
SQF51730.1\|466658_467033_+\|transposase	degenerate transposase	NA	NA	NA	NA
SQF51731.1\|467131_467428_+\|transposase	transposase	NA	NA	NA	NA
SQF51732.1\|467411_468200_+\|transposase	transposase	NA	NA	NA	NA
SQF51733.1\|468357_469572_+	putative transporter	NA	NA	NA	NA
SQF51734.1\|469573_470455_+	methyltransferase	NA	NA	NA	NA
SQF51735.1\|470444_471446_+	asparagine ligase A	M1PB22	Moumouvirus	5.2e-23	33.5
SQF51736.1\|471459_472707_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
SQF51737.1\|472934_473651_+	microcin C7 self-immunity protein	NA	NA	NA	NA
SQF51738.1\|473663_474875_+\|tRNA	histidyl-tRNA synthetase protein HisS	NA	NA	NA	NA
SQF51739.1\|475247_475604_-	Mobile element protein	U5P429	Shigella_phage	3.6e-11	32.8
SQF51740.1\|476097_476373_-\|transposase	transposase	NA	NA	NA	NA
SQF51741.1\|476676_477474_+	cof-like hydrolase family protein	NA	NA	NA	NA
SQF51742.1\|477477_478302_+	cof-like hydrolase family protein	NA	NA	NA	NA
SQF51743.1\|478301_479852_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
SQF51744.1\|479905_481273_-	multidrug resistance protein B	NA	NA	NA	NA
SQF51745.1\|481600_482443_+	Cryptic beta-glucoside bgl operon antiterminator	NA	NA	NA	NA
SQF51746.1\|482444_484307_+	PTS system protein	NA	NA	NA	NA
SQF51747.1\|484325_485750_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
SQF51748.1\|485848_486664_-	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF51749.1\|486663_487566_-	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF51750.1\|487713_487869_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
SQF51751.1\|488102_490235_+	transcription accessory protein	NA	NA	NA	NA
SQF51752.1\|490712_490985_+	membrane protein	NA	NA	NA	NA
SQF51753.1\|491349_492282_+	phosphorylase	NA	NA	NA	NA
SQF51754.1\|492278_493058_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
SQF51755.1\|493079_493487_+	General stress protein	NA	NA	NA	NA
SQF51756.1\|493479_493908_+	gas vesicle protein	NA	NA	NA	NA
SQF51757.1\|494067_494352_-	membrane protein	NA	NA	NA	NA
SQF51758.1\|494550_495477_+	peptidase	NA	NA	NA	NA
SQF51759.1\|495587_496865_+	peptidase, U32 family	Q6DW11	Phage_TP	7.1e-41	31.6
SQF51760.1\|497073_497286_+\|tRNA	seryl-tRNA synthetase	A0A223LEC3	Bacillus_phage	9.0e-10	46.9
SQF51761.1\|497658_499152_-\|tRNA	lysyl-tRNA synthetase	A0A1V0SAC0	Catovirus	3.3e-90	40.7
SQF51762.1\|499325_500228_+	putative hydrolase of the HAD superfamily	NA	NA	NA	NA
SQF51763.1\|500335_500959_-	phosphoglycerate mutase family protein	NA	NA	NA	NA
SQF51764.1\|501299_501779_-\|tRNA	ybaK / prolyl-tRNA synthetases associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

544530 : 638286

104

Temperate_phage(43.1%)

protease,tRNA,tail,head,integrase,holin,terminase,capsid,bacteriocin

attL 541212:541229|attR 612722:612739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
541212:541229	attL	NA	NA	NA	NA
SQF51801.1\|544530_545877_+\|tRNA	asparaginyl-tRNA synthetase	A0A2P1EMB4	Moumouvirus	1.1e-55	30.8
SQF51802.1\|546290_547181_+	P-loop ATPase protein family protein	A0A0R8VB27	Thermobifida_phage	8.8e-06	29.8
SQF51803.1\|547177_548155_+	transporter	A1IMD5	Streptococcus_phage	5.6e-139	74.5
SQF51804.1\|548151_549063_+	sporulation Regulator WhiA C terminal domain-containing protein	Q7AWZ3	Streptococcus_phage	1.0e-105	64.7
SQF51805.1\|549195_550593_+	dipeptidase	NA	NA	NA	NA
SQF51806.1\|550733_552281_+	high-affinity zinc uptake system protein	NA	NA	NA	NA
SQF51807.1\|552427_553150_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQF51808.1\|553169_554369_+	tagatose-6-phosphate ketose/aldose isomerase	NA	NA	NA	NA
SQF51809.1\|554465_554726_-	50S ribosomal protein L31	NA	NA	NA	NA
SQF51810.1\|554840_555782_-	DHH family protein	NA	NA	NA	NA
SQF51811.1\|556175_556625_+	flavodoxin	NA	NA	NA	NA
SQF51812.1\|556808_557093_+	chorismate mutase	NA	NA	NA	NA
SQF51813.1\|557085_558348_+	chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	2.9e-95	51.0
SQF51814.1\|558462_558810_+	50S ribosomal protein L19	NA	NA	NA	NA
SQF51815.1\|559173_560250_-\|integrase	prophage LambdaSa1, site-specific recombinase phage integrase family protein	Q0R5B4	Streptococcus_phage	2.0e-68	41.2
SQF51816.1\|560368_560890_-	phage protein	Q938N8	Temperate_phage	7.5e-66	97.7
SQF51817.1\|560900_561278_-	cI-like repressor	A0A1P8VVK5	Streptococcus_phage	1.6e-54	77.6
SQF51818.1\|561261_561621_-	Transcriptional regulator, MerR family	A0A1P8VVN3	Streptococcus_phage	1.7e-56	95.0
SQF51819.1\|561808_562027_+	Transcriptional regulator, Cro family	A0A1P8VVR5	Streptococcus_phage	5.9e-33	97.2
SQF51820.1\|562126_562357_+	Uncharacterised protein	NA	NA	NA	NA
SQF51821.1\|562340_562484_+	phage protein	A0A1P8VVR9	Streptococcus_phage	3.4e-13	83.7
SQF51822.1\|562493_562712_+	phage protein	NA	NA	NA	NA
SQF51823.1\|562713_562956_+	Uncharacterised protein	NA	NA	NA	NA
SQF51824.1\|562942_564259_+	chromosome segregation ATPases	A0A097BY67	Enterococcus_phage	7.8e-152	63.8
SQF51825.1\|564273_565356_+	phage protein	A0A0K2CZH1	Paenibacillus_phage	2.5e-103	53.3
SQF51826.1\|565394_565529_+	phage protein	NA	NA	NA	NA
SQF51827.1\|565550_566144_+	phage protein	A0A097BY29	Enterococcus_phage	1.7e-29	43.5
SQF51828.1\|566143_567727_+	DNA/RNA helicase	A0A097BY72	Enterococcus_phage	2.0e-234	77.8
SQF51829.1\|567739_567934_+	Uncharacterised protein	NA	NA	NA	NA
SQF51830.1\|567956_570200_+	ATPase	Q5YA88	Bacillus_phage	4.7e-282	63.7
SQF51831.1\|570491_570674_+	Uncharacterised protein	NA	NA	NA	NA
SQF51832.1\|570666_571062_+	phage protein	Q5YA86	Bacillus_phage	4.8e-41	59.5
SQF51833.1\|571058_571280_+	phage associated protein	NA	NA	NA	NA
SQF51834.1\|571282_571555_+	phage protein	A7J287	Streptococcus_phage	1.2e-17	58.9
SQF51835.1\|571558_572041_+	DNA N-4 cytosine methyltransferase M.NgoMXV	A0A097PAU8	Streptococcus_pyogenes_phage	9.6e-92	98.8
SQF51836.1\|572030_572795_+	Adenine-specific methyltransferase	A0A1S5SE41	Streptococcus_phage	4.2e-134	92.3
SQF51837.1\|572885_573179_+	phage protein	A0A097PAR1	Streptococcus_pyogenes_phage	1.5e-47	96.9
SQF51838.1\|573175_573274_+	Uncharacterised protein	NA	NA	NA	NA
SQF51839.1\|573634_574072_+	phage protein	A0A097PBF1	Streptococcus_pyogenes_phage	3.6e-77	100.0
SQF51840.1\|574405_575572_+	adenine methyltransferase	Q708N6	Streptococcus_phage	7.9e-124	53.9
SQF51841.1\|575914_576391_+	phage protein	Q938L4	Temperate_phage	4.9e-48	68.4
SQF51842.1\|576473_577685_+\|terminase	phage terminase	Q938L3	Temperate_phage	3.7e-225	99.7
SQF51843.1\|577698_579201_+\|capsid	Minor capsid protein	Q938L2	Temperate_phage	5.9e-281	99.6
SQF51844.1\|579205_580699_+\|capsid	phage minor capsid 2 family protein	Q938L1	Temperate_phage	2.1e-214	80.8
SQF51845.1\|580698_580926_+	phage protein	NA	NA	NA	NA
SQF51846.1\|581012_581279_+	secreted phage protein	Q938K9	Temperate_phage	8.3e-37	95.5
SQF51847.1\|581410_582019_+	phage protein	Q938K8	Temperate_phage	4.0e-95	95.0
SQF51848.1\|582022_582841_+\|head	putative major head protein	Q79S85	Temperate_phage	4.0e-146	100.0
SQF51849.1\|582894_583311_+	phage protein	Q938K7	Temperate_phage	2.8e-55	98.2
SQF51850.1\|583300_583633_+\|capsid	minor capsid protein - phage associated	Q79S86	Temperate_phage	1.1e-57	98.2
SQF51851.1\|583632_583989_+	phage protein	Q79S88	Temperate_phage	4.5e-62	100.0
SQF51852.1\|583985_584384_+\|capsid	minor capsid protein	Q79S87	Temperate_phage	3.5e-71	100.0
SQF51853.1\|584383_584869_+\|tail	major tail shaft protein	Q938K6	Temperate_phage	1.6e-86	100.0
SQF51854.1\|584907_585342_+	phage protein	Q938K5	Temperate_phage	2.9e-71	99.3
SQF51855.1\|585345_585927_+	bacteriophage Gp15 family protein	Q938K4	Temperate_phage	1.6e-104	98.4
SQF51856.1\|585916_589177_+	phage protein	Q938K3	Temperate_phage	0.0e+00	98.6
SQF51857.1\|589173_589890_+	phage protein	Q938K2	Temperate_phage	5.5e-136	98.7
SQF51858.1\|589886_592031_+	Phage endopeptidase	Q938K1	Temperate_phage	0.0e+00	95.7
SQF51859.1\|592027_593032_+	hyaluronoglucosaminidase	Q938K0	Temperate_phage	5.3e-108	62.7
SQF51860.1\|593046_594933_+	phage protein	Q938J9	Temperate_phage	4.6e-222	86.5
SQF51861.1\|594944_595376_+	phage protein	Q938J8	Temperate_phage	1.1e-73	100.0
SQF51862.1\|595378_595996_+	phage protein	Q938J7	Temperate_phage	1.7e-77	88.8
SQF51863.1\|596005_596281_+\|holin	phage holin	A7J2B2	Streptococcus_phage	2.6e-41	100.0
SQF51864.1\|596277_596505_+	phage protein	A7J2B3	Streptococcus_phage	5.8e-31	98.7
SQF51865.1\|596620_597823_+	phage associated protein	Q938J4	Temperate_phage	1.8e-235	97.5
SQF51866.1\|598189_598732_+	phage protein	Q938J3	Temperate_phage	2.2e-44	51.1
SQF51867.1\|598735_599572_+	hypothetical phage membrane protein	Q938J2	Temperate_phage	4.3e-63	52.3
SQF51868.1\|599639_599996_-	phage protein	NA	NA	NA	NA
SQF51869.1\|599997_600471_-	Uncharacterised protein	A3F671	Streptococcus_phage	8.0e-83	94.3
SQF51870.1\|600509_600749_-	Phage protein	NA	NA	NA	NA
SQF51871.1\|600951_601131_+	Paratox	A3F673	Streptococcus_phage	3.4e-18	77.6
SQF51872.1\|601076_601193_+	Uncharacterised protein	NA	NA	NA	NA
SQF51873.1\|601203_601425_-	DNA integration/recombination/inversion protein	NA	NA	NA	NA
SQF51874.1\|601952_602522_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA
SQF51875.1\|602522_604475_+	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	8.9e-144	46.3
SQF51876.1\|604831_606556_+	septation ring formation regulator	NA	NA	NA	NA
SQF51877.1\|606687_607146_-	hypothetical cytosolic protein	W6LLD2	Streptococcus_phage	1.8e-18	39.1
SQF51878.1\|607378_608686_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	1.2e-240	96.6
SQF51879.1\|609360_609522_+\|bacteriocin	bacteriocin protoxin, streptolysin S family protein	NA	NA	NA	NA
SQF51880.1\|609743_610694_+	sagB-type dehydrogenase domain-containing protein	NA	NA	NA	NA
SQF51881.1\|610690_611749_+\|bacteriocin	bacteriocin biosynthesis cyclodehydratase	NA	NA	NA	NA
SQF51882.1\|611768_613127_+\|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family domain-containing protein	NA	NA	NA	NA
612722:612739	attR	NA	NA	NA	NA
SQF51883.1\|613101_613773_+\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA
SQF51884.1\|613769_614453_+	streptolysin S biosynthesis protein SagF	NA	NA	NA	NA
SQF51885.1\|614475_615399_+	ABC transporter family protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.7e-33	38.1
SQF51886.1\|615407_616535_+	ABC transporter	NA	NA	NA	NA
SQF51887.1\|616531_617650_+	ABC transporter	NA	NA	NA	NA
SQF51888.1\|618220_620953_+	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA
SQF51889.1\|621924_623883_+	NAD-dependent DNA ligase	A0A0K2QQN8	Ralstonia_phage	7.6e-103	34.9
SQF51890.1\|623896_624919_+	lipid kinase	A0A1V0SBJ0	Catovirus	3.6e-19	27.9
SQF51891.1\|625310_625508_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
SQF51892.1\|625542_626259_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
SQF51893.1\|626276_626771_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
SQF51894.1\|626770_627307_+	ATP synthase delta chain	NA	NA	NA	NA
SQF51895.1\|627322_628831_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
SQF51896.1\|628846_629722_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
SQF51897.1\|629883_631290_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
SQF51898.1\|631302_631719_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
SQF51899.1\|631984_632242_+	membrane protein	NA	NA	NA	NA
SQF51900.1\|632306_633578_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
SQF51901.1\|633581_633770_+	epuA protein	NA	NA	NA	NA
SQF51902.1\|633805_634345_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA
SQF51903.1\|634594_635671_+\|tRNA	phenylalanyl-tRNA synthetase alpha subunit	A0A2K9L3A8	Tupanvirus	4.7e-30	34.3
SQF51904.1\|635880_638286_+\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA

DBSCAN-SWA_7

673697 : 684301

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF51937.1\|673697_675908_-	phosphoglycerol transferase	W6LM83	Streptococcus_phage	2.9e-268	69.2
SQF51938.1\|676015_677179_+	SAM-dependent methyltransferase	W6LLI2	Streptococcus_phage	7.6e-143	64.9
SQF51939.1\|677175_677862_+	3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	7.0e-88	68.9
SQF51940.1\|677955_679122_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-34	32.8
SQF51941.1\|679182_679524_+	hypothetical cytosolic protein	A0A1X9I5Y8	Streptococcus_phage	5.9e-19	41.1
SQF51942.1\|679744_681097_+	glutathione reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-29	23.8
SQF51943.1\|681176_682454_-	folylpolyglutamate synthase	NA	NA	NA	NA
SQF51944.1\|682483_682924_-	membrane protein	NA	NA	NA	NA
SQF51945.1\|683158_684301_+	aminotransferase class-V family protein	A0A1X6WFP1	Pacmanvirus	4.1e-24	27.0

DBSCAN-SWA_8

711249 : 747603

Bacillus_phage(25.0%)

transposase,head,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF51970.1\|711249_711981_+\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
SQF51971.1\|711980_712973_+	thioredoxin reductase	Q9JRK7	Streptococcus_phage	8.2e-29	54.9
SQF51972.1\|713150_714209_+	regulatory protein	NA	NA	NA	NA
SQF51973.1\|714221_715145_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQF51974.1\|715445_716114_+	deoR-like helix-turn-helix domain-containing protein	A0A077SK06	Escherichia_phage	2.2e-17	32.7
SQF51975.1\|716110_717022_+	1-phosphofructokinase	NA	NA	NA	NA
SQF51976.1\|717018_718965_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA
SQF51977.1\|719063_719657_+	N-acetylmuramidase	A0A249Y0X5	Enterococcus_phage	3.5e-11	33.8
SQF51978.1\|719808_720516_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q332B8	Clostridium_botulinum_C_phage	1.9e-11	36.4
SQF51979.1\|720671_720791_-\|transposase	degenerate transposase	NA	NA	NA	NA
SQF51980.1\|721472_722498_-\|protease	igG-degrading protease	NA	NA	NA	NA
SQF51981.1\|723000_723177_+	nucleoside diphosphate kinase	NA	NA	NA	NA
SQF51982.1\|723405_723786_+\|transposase	transposase	NA	NA	NA	NA
SQF51983.1\|723785_724634_+	degV family protein	NA	NA	NA	NA
SQF51984.1\|724758_725967_+\|head	poly A polymerase head domain-containing protein	H7BUW3	unidentified_phage	5.3e-38	45.0
SQF51985.1\|725963_727841_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.1e-63	31.5
SQF51986.1\|728730_729141_+	polypeptide deformylase family protein	E3SLL2	Synechococcus_phage	6.9e-06	30.6
SQF51987.1\|729222_731235_-	5'-nucleotidase	NA	NA	NA	NA
SQF51988.1\|731454_732105_+	GTP pyrophosphokinase	NA	NA	NA	NA
SQF51989.1\|732107_732776_+	two-component response regulator	W8CYM9	Bacillus_phage	2.3e-19	28.8
SQF51990.1\|732784_734017_+	two component system histidine kinase	NA	NA	NA	NA
SQF51991.1\|734310_735189_+	mevalonate kinase	NA	NA	NA	NA
SQF51992.1\|735170_736115_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
SQF51993.1\|736107_737121_+	phosphomevalonate kinase	NA	NA	NA	NA
SQF51994.1\|737107_738097_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA
SQF51995.1\|738326_739604_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
SQF51996.1\|739590_740766_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
SQF51997.1\|740980_741820_+	thymidylate synthase	U5J9N5	Bacillus_phage	1.7e-83	53.2
SQF51998.1\|741899_742397_+	dihydrofolate reductase	W5QU76	Bacillus_phage	8.6e-11	34.4
SQF51999.1\|742416_742587_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQF52000.1\|742716_743946_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.0e-137	60.5
SQF52001.1\|743955_744555_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
SQF52002.1\|744702_745446_+	virulence factor relevant regulator	NA	NA	NA	NA
SQF52003.1\|745503_747603_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	9.6e-120	39.1

DBSCAN-SWA_9

985508 : 1153043

182

Streptococcus_phage(42.86%)

protease,tRNA,tail,portal,integrase,holin,terminase,capsid,transposase

attL 1018875:1018934|attR 1157580:1157596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF52228.1\|985508_986393_-\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
SQF52229.1\|986508_987849_-	Serine/threonine-protein kinase MRCK beta	NA	NA	NA	NA
SQF52230.1\|987954_988911_-	membrane protein	NA	NA	NA	NA
SQF52231.1\|988921_989518_-	type I restriction-modification system specificty subunit	NA	NA	NA	NA
SQF52232.1\|989609_992246_-	permease family protein	NA	NA	NA	NA
SQF52233.1\|992260_992962_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.9e-36	37.0
SQF52234.1\|993079_993622_+	bacterial regulatory s, tetR family protein	NA	NA	NA	NA
SQF52235.1\|993764_994406_-	bacterial regulatory s, gntR family protein	NA	NA	NA	NA
SQF52236.1\|994568_995057_-	general stress protein, Gls24 family	NA	NA	NA	NA
SQF52237.1\|995067_995268_-	csbD-like family protein	J7KJ36	Streptococcus_phage	1.8e-07	50.0
SQF52238.1\|995308_995848_-	response regulator	NA	NA	NA	NA
SQF52239.1\|995860_996049_-	membrane protein	NA	NA	NA	NA
SQF52240.1\|996059_996647_-	membrane protein	NA	NA	NA	NA
SQF52241.1\|996707_996956_-	transglycosylase associated family protein	NA	NA	NA	NA
SQF52242.1\|997318_999637_-	DNA helicase II / ATP-dependent DNA helicase PcrA	A7KV33	Bacillus_phage	3.5e-131	41.2
SQF52243.1\|1000166_1001489_+	amino acid symporter	NA	NA	NA	NA
SQF52244.1\|1001608_1002844_+	cation diffusion facilitator transporter family protein	NA	NA	NA	NA
SQF52245.1\|1003213_1003987_-	protein B	NA	NA	NA	NA
SQF52246.1\|1004356_1005193_-	polar amino acid ABC uptake transporter substrate binding protein	NA	NA	NA	NA
SQF52247.1\|1005208_1005838_-	histidine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.8e-28	35.5
SQF52248.1\|1005847_1006489_-	histidine transporter permease	NA	NA	NA	NA
SQF52249.1\|1006595_1006931_-	phosphonoacetate hydrolase	NA	NA	NA	NA
SQF52250.1\|1007126_1008941_-	glucosamine-fructose-6-phosphate aminotransferase	A7IW18	Paramecium_bursaria_Chlorella_virus	5.2e-98	38.9
SQF52251.1\|1009116_1009674_-	signal peptidase I	NA	NA	NA	NA
SQF52252.1\|1009891_1011394_-	pyruvate kinase	NA	NA	NA	NA
SQF52253.1\|1011456_1012470_-	6-phosphofructokinase	NA	NA	NA	NA
SQF52254.1\|1012549_1015660_-	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.4e-119	29.8
SQF52255.1\|1015844_1016216_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQF52256.1\|1016215_1016914_+	ABC transporter family protein	F2Y2R6	Organic_Lake_phycodnavirus	6.6e-09	27.3
SQF52257.1\|1016923_1017709_+	ABC transporter permease protein	NA	NA	NA	NA
SQF52258.1\|1017839_1018454_-	membrane protein	M1Q152	Streptococcus_phage	6.2e-51	52.3
1018875:1018934	attL	NA	NA	NA	NA
SQF52259.1\|1019044_1019233_-	phage protein	A3F673	Streptococcus_phage	1.2e-21	84.7
1018875:1018934	attL	NA	NA	NA	NA
SQF52260.1\|1019347_1020136_-	exotoxin M precursor	Q938J1	Temperate_phage	1.2e-46	41.4
SQF52261.1\|1020417_1021131_-	mitogen	Q938J1	Temperate_phage	9.0e-78	59.5
SQF52262.1\|1021514_1022108_-	phage protein	A0A0A8WFI2	Clostridium_phage	2.4e-23	38.2
SQF52263.1\|1022107_1022272_-	phage protein	NA	NA	NA	NA
SQF52264.1\|1022420_1023065_-	bacterial SH3 domain protein	Q938J4	Temperate_phage	3.6e-94	78.6
SQF52265.1\|1023174_1023867_-	AP2 domain protein	A0A2H4J2S8	uncultured_Caudovirales_phage	1.5e-32	34.2
SQF52266.1\|1024099_1024657_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	A7J2B5	Streptococcus_phage	1.0e-92	85.9
SQF52267.1\|1024653_1024764_-	phage membrane protein	A7J2B4	Streptococcus_phage	1.8e-09	97.2
SQF52268.1\|1024772_1025000_-	phage protein	A7J2B3	Streptococcus_phage	2.0e-31	100.0
SQF52269.1\|1024996_1025272_-\|holin	phage holin	A7J2B2	Streptococcus_phage	2.6e-41	100.0
SQF52270.1\|1025281_1025899_-	phage protein	A3F662	Streptococcus_phage	5.7e-81	90.2
SQF52271.1\|1025901_1026330_-	phage protein	A3F661	Streptococcus_phage	3.0e-68	92.9
SQF52272.1\|1026341_1027415_-	Phage infection protein	Q938J9	Temperate_phage	3.2e-135	74.5
SQF52273.1\|1027362_1028247_-	phage infection protein	A7J2A9	Streptococcus_phage	1.3e-65	85.8
SQF52274.1\|1028261_1028942_-	hyaluronoglucosaminidase	Q938K0	Temperate_phage	8.5e-118	98.2
SQF52275.1\|1029271_1031416_-	Phage endopeptidase	Q938K1	Temperate_phage	0.0e+00	94.0
SQF52276.1\|1031412_1032120_-	phage protein	Q938K2	Temperate_phage	1.7e-92	71.1
SQF52277.1\|1032119_1036043_-\|tail	phage tail protein	J7KDT4	Streptococcus_phage	1.1e-249	50.0
SQF52278.1\|1036055_1036223_-	phage protein	J7KBS0	Streptococcus_phage	2.9e-19	87.3
SQF52279.1\|1036252_1036579_-	phage protein	J7KK85	Streptococcus_phage	6.0e-37	73.1
SQF52280.1\|1036631_1037240_-\|tail	major tail protein	J7KKC8	Streptococcus_phage	2.3e-74	70.5
SQF52281.1\|1037256_1037682_-	phage protein	J7KBZ9	Streptococcus_phage	5.0e-68	85.1
SQF52282.1\|1037678_1038056_-	phage protein	J7KDM3	Streptococcus_phage	1.4e-45	72.8
SQF52283.1\|1038052_1038400_-	phage protein	J7KJ42	Streptococcus_phage	4.2e-49	84.5
SQF52284.1\|1038396_1038699_-	phage protein	J7KC36	Streptococcus_phage	4.7e-44	88.0
SQF52285.1\|1038834_1040037_-\|capsid	phage major capsid protein	J7KJ82	Streptococcus_phage	2.7e-135	64.7
SQF52286.1\|1040062_1040728_-\|protease	phage ClpP protease	M1Q115	Streptococcus_phage	2.3e-91	77.2
SQF52287.1\|1040705_1041926_-\|portal	phage portal protein	J7KDU3	Streptococcus_phage	9.0e-187	81.9
SQF52288.1\|1041959_1042184_-	phage protein	Q938K9	Temperate_phage	3.6e-17	61.4
SQF52289.1\|1042176_1042347_-	phage protein	J7KK43	Streptococcus_phage	2.3e-08	62.5
SQF52290.1\|1042343_1044092_-\|terminase	phage terminase, large subunit	J7KKD1	Streptococcus_phage	0.0e+00	96.0
SQF52291.1\|1044101_1044332_-	Uncharacterised protein	NA	NA	NA	NA
SQF52292.1\|1044334_1044802_-\|terminase	phage terminase, small subunit	J7KC46	Streptococcus_phage	3.9e-82	98.7
SQF52293.1\|1044972_1045311_-	Phage endonuclease	J7KH36	Streptococcus_phage	2.4e-57	97.2
SQF52294.1\|1045560_1046001_-	phage encoded transcriptional regulator, ArpU family	Q938L8	Temperate_phage	5.0e-79	100.0
SQF52295.1\|1046273_1046909_-	phage protein	L0P368	Streptococcus_phage	3.0e-85	67.0
SQF52296.1\|1046908_1047097_-	Uncharacterised protein	NA	NA	NA	NA
SQF52297.1\|1047163_1047310_-	Uncharacterised protein	NA	NA	NA	NA
SQF52298.1\|1047407_1047635_-	phage protein	A3F630	Streptococcus_phage	4.3e-26	76.0
SQF52299.1\|1047638_1048061_-	DNA N-4 cytosine methyltransferase M.NgoMXV	A0A097PAU8	Streptococcus_pyogenes_phage	2.1e-50	100.0
SQF52300.1\|1048044_1048395_-	phage protein	A0A1P8VVL5	Streptococcus_phage	2.2e-45	87.5
SQF52301.1\|1048348_1049218_-	phage protein	A0A1P8BME8	Lactococcus_phage	5.8e-103	65.6
SQF52302.1\|1049486_1051040_-	bacteriophage resistance protein	A0A1P8BM51	Lactococcus_phage	1.5e-210	70.6
SQF52303.1\|1051057_1051540_-	phage protein	A0A1P8BM40	Lactococcus_phage	1.7e-59	70.7
SQF52304.1\|1051544_1052909_-	DEAD/DEAH box helicase	A0A1P8BMH7	Lactococcus_phage	3.8e-194	72.1
SQF52305.1\|1052983_1053667_-	phage protein	J7KC09	Streptococcus_phage	4.6e-124	98.2
SQF52306.1\|1053663_1053948_-	phage protein	NA	NA	NA	NA
SQF52307.1\|1053944_1054139_-	phage protein	J7KK69	Streptococcus_phage	3.9e-12	54.2
SQF52308.1\|1054138_1054468_-	phage protein	J7KBZ0	Streptococcus_phage	7.9e-13	41.8
SQF52309.1\|1054451_1054565_-	Uncharacterised protein	A0A097PAT6	Streptococcus_pyogenes_phage	2.0e-08	77.8
SQF52310.1\|1054548_1054686_-	phage protein	A0A097PAR2	Streptococcus_pyogenes_phage	3.4e-18	100.0
SQF52311.1\|1054682_1054979_-	phage protein	A0A097PAT8	Streptococcus_pyogenes_phage	3.1e-48	98.0
SQF52312.1\|1055057_1055243_-	phage regulatory protein	A0A1X9I6I3	Streptococcus_phage	3.3e-16	72.1
SQF52313.1\|1055409_1055649_+	phage protein	NA	NA	NA	NA
SQF52314.1\|1055798_1056008_+	phage protein	NA	NA	NA	NA
SQF52315.1\|1055966_1056212_-	phage protein	A0A097PAP6	Streptococcus_pyogenes_phage	1.2e-34	95.1
SQF52316.1\|1056223_1056463_-	Cro/CI family phage transcriptional regulator	A0A097PBE6	Streptococcus_pyogenes_phage	3.1e-35	97.5
SQF52317.1\|1056536_1057019_+	Uncharacterised protein	NA	NA	NA	NA
SQF52318.1\|1057015_1057162_-	Uncharacterised protein	NA	NA	NA	NA
SQF52319.1\|1057218_1058004_+	Uncharacterised protein	A0A1S5S7L0	Streptococcus_phage	4.8e-48	57.4
SQF52320.1\|1057939_1058104_-	Uncharacterised protein	NA	NA	NA	NA
SQF52321.1\|1058137_1058296_-	phage protein	J7KH24	Streptococcus_phage	3.4e-22	92.3
SQF52322.1\|1058469_1059258_+	Phage transcriptional repressor	A0A1S5SD15	Streptococcus_phage	2.9e-85	62.6
SQF52323.1\|1059267_1059573_+	phage membrane protein	NA	NA	NA	NA
SQF52324.1\|1059692_1060781_+\|integrase	integrase	Q38159	Streptococcus_phage	3.0e-202	98.6
SQF52325.1\|1061143_1061764_+	phage protein	NA	NA	NA	NA
1060824:1060919	attR	NA	NA	NA	NA
SQF52326.1\|1062020_1064285_-	glycogen phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	1.2e-11	43.7
1060824:1060919	attR	NA	NA	NA	NA
SQF52327.1\|1064319_1065813_-	4-alpha-glucanotransferase	NA	NA	NA	NA
SQF52328.1\|1065926_1066946_-	LacI family transcription regulator	C6ZCU4	Enterobacteria_phage	5.7e-17	27.8
SQF52329.1\|1067188_1068436_+	maltose/maltodextrin-binding protein	NA	NA	NA	NA
SQF52330.1\|1068709_1070071_+	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA
SQF52331.1\|1070070_1070907_+	maltose transport system permease	NA	NA	NA	NA
SQF52332.1\|1071087_1071339_+\|transposase	transposase	NA	NA	NA	NA
SQF52333.1\|1071280_1071868_+\|transposase	truncated transposase	Q9MBM9	Staphylococcus_prophage	5.4e-28	39.6
SQF52334.1\|1072381_1073365_-	alpha/beta fold family hydrolase	NA	NA	NA	NA
SQF52335.1\|1073395_1074646_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA
SQF52336.1\|1074638_1074878_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
SQF52337.1\|1074895_1076152_-	Protein dltB	NA	NA	NA	NA
SQF52338.1\|1076148_1077687_-	D-alanine--poly(phosphoribitol) ligase subunit 1	A0A2K9KZV5	Tupanvirus	1.9e-40	28.0
SQF52339.1\|1077698_1077842_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA
SQF52340.1\|1078104_1080096_-	excinuclease ABC subunit B	NA	NA	NA	NA
SQF52341.1\|1080288_1082463_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA
SQF52342.1\|1082462_1083203_+	glutamine transport ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	1.5e-35	42.1
SQF52343.1\|1083350_1083503_-	Uncharacterised protein	NA	NA	NA	NA
SQF52344.1\|1083499_1084879_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA
SQF52345.1\|1085056_1085506_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA
SQF52346.1\|1085502_1085838_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA
SQF52347.1\|1085840_1086152_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA
SQF52348.1\|1086174_1088169_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA
SQF52349.1\|1088274_1089369_-	outer surface protein	NA	NA	NA	NA
SQF52350.1\|1089377_1090778_-	beta-glucosidase	NA	NA	NA	NA
SQF52351.1\|1091002_1091698_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA
SQF52352.1\|1091702_1091861_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQF52353.1\|1091929_1093243_-	GTPase ObgE	NA	NA	NA	NA
SQF52354.1\|1093300_1093429_-	membrane protein	NA	NA	NA	NA
SQF52355.1\|1093670_1094186_+\|transposase	transposase	NA	NA	NA	NA
SQF52356.1\|1094206_1095013_+\|transposase	transposase, IS861	A0A1B1P773	Bacillus_phage	1.2e-62	49.3
SQF52357.1\|1095312_1096185_-	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA
SQF52358.1\|1096408_1097719_+	membrane protein	NA	NA	NA	NA
SQF52359.1\|1097796_1098090_+\|transposase	transposase	NA	NA	NA	NA
SQF52360.1\|1098233_1098692_+\|integrase	integrase core domain protein	A0A1P8CWQ3	Bacillus_phage	1.9e-20	39.3
SQF52361.1\|1098861_1099593_-	16S pseudouridylate synthase	NA	NA	NA	NA
SQF52362.1\|1099706_1100072_+	thioesterase superfamily protein	NA	NA	NA	NA
SQF52363.1\|1100191_1101412_-	sugar (and other) transporter family protein	NA	NA	NA	NA
SQF52364.1\|1101785_1103270_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQF52365.1\|1103374_1103776_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA
SQF52366.1\|1103860_1104100_-	phosphorylase Pnp/Udp family protein	F5CA76	Streptococcus_phi-m46.1-like_phage	4.4e-37	96.2
SQF52367.1\|1104790_1106149_-\|tRNA	tRNA (uracil-5-)-methyltransferase	F5CA72	Streptococcus_phi-m46.1-like_phage	4.3e-254	98.7
SQF52368.1\|1106230_1107682_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA
SQF52369.1\|1107889_1108381_-	shikimate kinase	NA	NA	NA	NA
SQF52370.1\|1108373_1109657_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
SQF52371.1\|1109767_1110733_-	ribonuclease BN-like family protein	NA	NA	NA	NA
SQF52372.1\|1110734_1111595_-	methionine aminopeptidase Map	NA	NA	NA	NA
SQF52373.1\|1111610_1112894_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA
SQF52374.1\|1112902_1113445_-	acetyltransferase family protein	NA	NA	NA	NA
SQF52375.1\|1114132_1114252_-	protein G-related alpha 2M-bindingprotein	NA	NA	NA	NA
SQF52376.1\|1114608_1115868_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
SQF52377.1\|1116041_1117238_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	5.3e-139	65.9
SQF52378.1\|1117773_1120131_-	leucine Rich Repeat family protein	NA	NA	NA	NA
SQF52379.1\|1120334_1121276_+	biotin-protein ligase	NA	NA	NA	NA
SQF52380.1\|1121549_1123220_-	DNA polymerase III subunits gamma and tau	E7DN81	Pneumococcus_phage	5.1e-47	40.6
SQF52381.1\|1123219_1123717_-	GAF domain-containing protein	NA	NA	NA	NA
SQF52382.1\|1123861_1124671_+	membrane protein	NA	NA	NA	NA
SQF52383.1\|1124723_1124987_-	membrane protein	NA	NA	NA	NA
SQF52384.1\|1125066_1125693_-	uridine kinase	A0A1V0SAA3	Catovirus	2.2e-35	39.7
SQF52385.1\|1125790_1126876_+	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.6e-33	32.3
SQF52386.1\|1126985_1128260_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
SQF52387.1\|1128354_1129782_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
SQF52388.1\|1129966_1131700_-	Phosphoenolpyruvate-protein phosphotransferase of PTS system	NA	NA	NA	NA
SQF52389.1\|1131704_1131968_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA
SQF52390.1\|1132360_1132579_+	glutaredoxin	A0A249XUR7	Enterococcus_phage	1.1e-13	49.3
SQF52391.1\|1132598_1134758_+	ribonucleotide-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	6.1e-263	63.4
SQF52392.1\|1135090_1136050_+	ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	3.7e-127	70.5
SQF52393.1\|1136024_1137338_+	chloride channel protein	NA	NA	NA	NA
SQF52394.1\|1137433_1137727_+\|transposase	transposase	NA	NA	NA	NA
SQF52395.1\|1137759_1138056_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	6.5e-06	42.0
SQF52396.1\|1138158_1138329_+\|integrase	integrase	U5P429	Shigella_phage	1.5e-07	48.1
SQF52397.1\|1138368_1138590_+\|transposase	transposase	U5P429	Shigella_phage	7.2e-10	42.9
SQF52398.1\|1138681_1139377_-\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA
SQF52399.1\|1139395_1140157_-	hypothetical membrane spanning protein	NA	NA	NA	NA
SQF52400.1\|1140153_1140369_-	XRE family transcriptional regulator	NA	NA	NA	NA
SQF52401.1\|1140729_1143348_-\|tRNA	Alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.1e-61	34.1
SQF52402.1\|1143734_1144790_-	foldase protein prsA 1	NA	NA	NA	NA
SQF52403.1\|1144852_1145524_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	2.4e-08	27.2
SQF52404.1\|1145625_1146822_-	major facilitator superfamily protein	NA	NA	NA	NA
SQF52405.1\|1147197_1149003_-	oligoendopeptidase F	NA	NA	NA	NA
SQF52406.1\|1149015_1149978_-	competence CoiA-like family protein	NA	NA	NA	NA
SQF52407.1\|1150273_1150990_-	16S pseudouridylate synthetase	NA	NA	NA	NA
SQF52408.1\|1151108_1151813_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
SQF52409.1\|1152014_1153043_+\|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
1157580:1157596	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1177556 : 1217555

Streptococcus_phage(68.63%)

tail,head,terminase,integrase

attL 1179761:1179780|attR 1214940:1214959

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF52434.1\|1177556_1179419_-	putative heavy metal-transporting ATPase	E4ZFI9	Streptococcus_phage	2.4e-90	33.8
1179761:1179780	attL	NA	NA	NA	NA
SQF52435.1\|1179949_1180132_-	paratox	A3F673	Streptococcus_phage	1.7e-20	80.0
SQF52436.1\|1180371_1181130_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA
SQF52437.1\|1181240_1181948_+	exotoxin type C	A0A097PAT7	Streptococcus_pyogenes_phage	3.9e-09	27.1
SQF52438.1\|1182016_1183234_-	N-acetylmuramoyl-L-alanine amidase	A0A1P8VVM5	Streptococcus_phage	1.1e-163	60.1
SQF52439.1\|1183227_1183344_-	phage membrane protein	A7J2B4	Streptococcus_phage	7.0e-09	97.1
SQF52440.1\|1183352_1183580_-	phage protein	A7J2B3	Streptococcus_phage	2.0e-31	100.0
SQF52441.1\|1183576_1183849_-	phage membrane protein	A7J2B2	Streptococcus_phage	5.5e-36	91.0
SQF52442.1\|1183860_1184493_-	phage protein	Q938J7	Temperate_phage	1.2e-44	50.5
SQF52443.1\|1184495_1184924_-	phage protein	Q938J8	Temperate_phage	3.7e-63	87.9
SQF52444.1\|1184932_1186714_-	gp58-like family protein	Q938J9	Temperate_phage	1.5e-65	40.2
SQF52445.1\|1186728_1187742_-	phage hyaluronoglucosaminidase	Q938K0	Temperate_phage	2.7e-168	91.1
SQF52446.1\|1187741_1189700_-	phage endopeptidase	M1PKG3	Streptococcus_phage	3.4e-95	48.7
SQF52447.1\|1189696_1190392_-	phage protein	A0A1B1P761	Bacillus_phage	4.7e-07	32.2
SQF52448.1\|1190388_1192752_-\|tail	minor tail protein GP26	M1NRG5	Streptococcus_phage	2.5e-132	50.1
SQF52449.1\|1192751_1193123_-	phage protein	M1PL84	Streptococcus_phage	1.7e-35	62.4
SQF52450.1\|1193137_1193401_-	phage protein	A0A0B5A2F3	Streptococcus_phage	1.0e-18	55.8
SQF52451.1\|1193411_1194002_-\|tail	major tail protein	M1PKG8	Streptococcus_phage	1.1e-60	62.5
SQF52452.1\|1194017_1194353_-	phage protein	A0A1P8BMR5	Lactococcus_phage	9.8e-35	64.9
SQF52453.1\|1194353_1194590_-	phage protein	A0A1P8BMT2	Lactococcus_phage	2.5e-21	66.7
SQF52454.1\|1194582_1194921_-	phage protein	A0A0B5A086	Streptococcus_phage	8.1e-45	75.0
SQF52455.1\|1194880_1195303_-	phage Gp19/Gp15/Gp42 family protein	A0A0B5A2F6	Streptococcus_phage	8.2e-47	67.2
SQF52456.1\|1195312_1195513_-	phage protein	NA	NA	NA	NA
SQF52457.1\|1195512_1196424_-\|head	phage, major head protein	M1PFL0	Streptococcus_phage	2.9e-113	67.0
SQF52458.1\|1196448_1196910_-	phage protein	M1Q1L0	Streptococcus_phage	4.5e-38	53.2
SQF52459.1\|1196990_1198406_-\|terminase	phage terminase	A0A0B5A091	Streptococcus_phage	1.5e-212	74.0
SQF52460.1\|1198487_1198703_-	phage protein	M1IRA5	Streptococcus_phage	4.1e-26	72.4
SQF52461.1\|1198704_1198971_-	secreted phage protein	Q938K9	Temperate_phage	6.4e-37	95.5
SQF52462.1\|1198963_1199116_-	phage protein	NA	NA	NA	NA
SQF52463.1\|1199192_1199417_-	phage protein	NA	NA	NA	NA
SQF52464.1\|1199422_1200916_-	phage protein	M1Q184	Streptococcus_phage	2.0e-87	55.0
SQF52465.1\|1200908_1202177_-	structural phage protein	M1PFL4	Streptococcus_phage	2.2e-188	75.6
SQF52466.1\|1202173_1202530_-	phage protein	M1PRL3	Streptococcus_phage	2.4e-07	57.8
SQF52467.1\|1203129_1203549_-	phage protein	A0A1X9I5B5	Streptococcus_phage	6.7e-57	79.9
SQF52468.1\|1203624_1203876_-	phage protein	M1PF60	Streptococcus_phage	1.6e-18	59.0
SQF52469.1\|1203872_1204028_-	phage protein	NA	NA	NA	NA
SQF52470.1\|1204024_1204342_-	phage protein	A1EAD7	Streptococcus_phage	9.0e-30	71.4
SQF52471.1\|1204377_1204890_-	lactococcus phage M3 family protein	M1PFM2	Streptococcus_phage	1.7e-78	85.9
SQF52472.1\|1204886_1205219_-	phage protein	M1NS23	Streptococcus_phage	8.8e-36	67.0
SQF52473.1\|1205229_1206576_-	PcfJ	A8ATM0	Listeria_phage	1.0e-122	49.4
SQF52474.1\|1206572_1206968_-	phage protein	A8ATL9	Listeria_phage	1.4e-19	52.3
SQF52475.1\|1207118_1207211_-	phage protein	A0A1S5SCN4	Streptococcus_phage	3.7e-05	70.0
SQF52476.1\|1207332_1208130_-	phage protein	J7KGZ1	Streptococcus_phage	4.1e-132	84.5
SQF52477.1\|1208122_1208323_-	phage protein	NA	NA	NA	NA
SQF52478.1\|1208319_1209246_-	recombinase, phage RecT family protein	M1NRN6	Streptococcus_phage	1.2e-90	71.8
SQF52479.1\|1209248_1209578_-	phage protein	J7KGX3	Streptococcus_phage	7.1e-46	84.4
SQF52480.1\|1209633_1209840_-	phage protein	NA	NA	NA	NA
SQF52481.1\|1209848_1209989_-	phage protein	A0A1X9I6Y1	Streptococcus_phage	3.4e-05	54.5
SQF52482.1\|1209985_1210219_-	phage protein	Q938N1	Temperate_phage	2.8e-36	96.1
SQF52483.1\|1210199_1210586_-	phage DNA replication protein	Q938N2	Temperate_phage	8.1e-25	51.9
SQF52484.1\|1211119_1211305_-	phage protein	Q938N3	Temperate_phage	1.3e-20	83.6
SQF52485.1\|1211306_1211618_-	excisionase	A0A1S5SA25	Streptococcus_phage	5.3e-43	77.7
SQF52486.1\|1211715_1211847_-	Uncharacterised protein	NA	NA	NA	NA
SQF52487.1\|1211887_1212100_-	helix-turn-helix family protein	A0A1X9I583	Streptococcus_phage	1.1e-10	56.7
SQF52488.1\|1212301_1213057_+	Cro/CI family transcriptional regulator	A0A1S5S8S8	Streptococcus_phage	2.8e-77	60.8
SQF52489.1\|1213068_1213587_+	HIRAN domain protein	E8ZDN5	Streptococcus_phage	9.2e-32	45.9
SQF52490.1\|1213710_1214853_+\|integrase	phage integrase family protein	M1NRJ9	Streptococcus_phage	2.4e-173	77.4
SQF52491.1\|1214941_1215217_-	DNA-binding protein HU 1	A7KV42	Bacillus_phage	2.6e-25	73.0
1214940:1214959	attR	NA	NA	NA	NA
SQF52492.1\|1215315_1215903_-	membrane protein	NA	NA	NA	NA
SQF52493.1\|1215880_1216741_-	GDSL family lipase	NA	NA	NA	NA
SQF52494.1\|1216715_1217555_-	degV family protein	A0A0N9SI50	Staphylococcus_phage	7.0e-13	35.7

DBSCAN-SWA_11

1712595 : 1750870

Streptococcus_phage(82.98%)

protease,tail,head,portal,integrase,terminase,capsid

attL 1716475:1716500|attR 1748157:1748182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF52933.1\|1712595_1715040_-	clp amino terminal domain-containing protein	A0A223W0B1	Agrobacterium_phage	5.4e-122	39.2
SQF52934.1\|1715039_1715501_-	transcriptional regulator	NA	NA	NA	NA
1716475:1716500	attL	NA	NA	NA	NA
SQF52935.1\|1716498_1717569_-\|integrase	integrase	A0A1P8VVR7	Streptococcus_phage	9.6e-92	48.3
SQF52936.1\|1717696_1717999_-	putative lipoprotein	A0A1S5SAH9	Streptococcus_phage	1.5e-21	53.6
SQF52937.1\|1717991_1718378_-	phage protein	Q938N7	Temperate_phage	2.4e-37	61.6
SQF52938.1\|1718381_1718732_-	repressor - phage associated	A0A1S5S8C4	Streptococcus_phage	8.1e-40	70.6
SQF52939.1\|1719128_1719338_+	putative phage DNA binding protein	A0A1P8VVQ4	Streptococcus_phage	3.0e-26	88.2
SQF52940.1\|1719337_1719700_+	phage protein	A0A1P8VVU1	Streptococcus_phage	6.6e-37	68.8
SQF52941.1\|1719721_1720006_+	DNA-binding phage protein	B3GVX8	Streptococcus_phage	3.5e-41	81.9
SQF52942.1\|1720032_1720251_+	Uncharacterised protein	A0A1P8VVV1	Streptococcus_phage	3.9e-24	83.3
SQF52943.1\|1720259_1721606_+	DNA polymerase III delta prime subunit	A0A1P8VVQ6	Streptococcus_phage	9.3e-209	83.7
SQF52944.1\|1721592_1722339_+	DNA replication protein, putative	A0A1P8VVR3	Streptococcus_phage	3.5e-133	96.0
SQF52945.1\|1722339_1723161_+	prophage LambdaSa2, DNA replication protein DnaC	A0A1P8VVV9	Streptococcus_phage	1.1e-148	95.2
SQF52946.1\|1723160_1723388_+	phage protein	C5J991	Streptococcus_phage	1.3e-11	46.6
SQF52947.1\|1723401_1723572_+	phage protein	Q938M0	Temperate_phage	2.5e-10	96.8
SQF52948.1\|1723568_1723838_+	phage membrane protein	A7J287	Streptococcus_phage	1.4e-28	77.5
SQF52949.1\|1723840_1724590_+	Adenine-specific methyltransferase	Q9MCL7	Streptococcus_virus	7.3e-131	89.5
SQF52950.1\|1724637_1725384_+	phage protein	A0A2H4JBN7	uncultured_Caudovirales_phage	5.4e-25	43.1
SQF52951.1\|1725395_1725614_+	Uncharacterised protein	NA	NA	NA	NA
SQF52952.1\|1725610_1726003_+	single strand binding protein	A0A1P8VVS8	Streptococcus_phage	4.1e-48	71.7
SQF52953.1\|1726016_1726295_+	Uncharacterised protein	A3F632	Streptococcus_phage	9.6e-44	96.7
SQF52954.1\|1726291_1726393_+	immunity repressor protein - phage associated	A3F633	Streptococcus_phage	1.3e-06	93.1
SQF52955.1\|1726389_1726617_+	Uncharacterised protein	NA	NA	NA	NA
SQF52956.1\|1726588_1727053_+	transcriptional activator-phage associated	A0A1P8VVT5	Streptococcus_phage	5.8e-78	92.2
SQF52957.1\|1727162_1727705_+\|integrase	prophage LambdaSa2, site-specific recombinase phage integrase family protein	A0A1S5SCL7	Streptococcus_phage	8.3e-100	98.9
SQF52958.1\|1727874_1728057_+	Uncharacterised protein	A0A1S5SAV8	Streptococcus_phage	6.5e-09	51.7
SQF52959.1\|1728763_1729243_+	Uncharacterised protein	A0A1S5SCZ6	Streptococcus_phage	1.4e-79	98.7
SQF52960.1\|1729235_1730948_+\|terminase	prophage LambdaSa2, terminase large subunit	A0A1S5SCW2	Streptococcus_phage	0.0e+00	97.0
SQF52961.1\|1730956_1732099_+\|portal	phage portal protein, HK97 family	A0A1P8VVT4	Streptococcus_phage	5.3e-213	98.2
SQF52962.1\|1732149_1732692_+\|protease	prophage LambdaSa2, protease	A0A1P8VVX2	Streptococcus_phage	6.8e-94	96.7
SQF52963.1\|1732702_1733965_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A1P8VVT0	Streptococcus_phage	5.8e-197	85.6
SQF52964.1\|1733984_1734323_+	Uncharacterised protein	A0A1P8VVS7	Streptococcus_phage	1.2e-45	80.6
SQF52965.1\|1734319_1734625_+\|head,tail	phage head-tail adaptor	A0A1P8VVX4	Streptococcus_phage	5.4e-40	84.2
SQF52966.1\|1734624_1734972_+	Uncharacterised protein	A0A1P8VVS6	Streptococcus_phage	3.6e-56	92.2
SQF52967.1\|1734958_1735303_+	bacteriophage pi2 protein 37	A0A1P8VVU6	Streptococcus_phage	8.8e-55	92.1
SQF52968.1\|1735317_1735989_+\|tail	phi13 family phage major tail protein	A0A1P8VVR1	Streptococcus_phage	7.6e-111	89.9
SQF52969.1\|1735992_1736466_+	Uncharacterised protein	A0A0A0YX24	Streptococcus_phage	9.2e-79	90.4
SQF52970.1\|1736655_1739391_+\|tail	phage-related minor tail protein	A0A1P8VVW8	Streptococcus_phage	4.7e-244	90.5
SQF52971.1\|1739387_1740110_+	phage protein	A0A1P8VVR4	Streptococcus_phage	1.7e-124	90.0
SQF52972.1\|1740110_1742054_+	prophage LambdaSa2, PblB	A0A1P8VVT1	Streptococcus_phage	5.5e-186	65.3
SQF52973.1\|1742050_1743166_+	phage associated hyaluronidase	A7J2A8	Streptococcus_phage	1.7e-123	71.7
SQF52974.1\|1743180_1744962_+	gp58-like family protein	Q938J9	Temperate_phage	2.0e-73	42.8
SQF52975.1\|1744970_1745399_+	phage protein	Q938J8	Temperate_phage	3.7e-63	89.3
SQF52976.1\|1745401_1746040_+	phage protein	A3F662	Streptococcus_phage	1.2e-44	53.2
SQF52977.1\|1746049_1746322_+	phage membrane protein	A7J2B2	Streptococcus_phage	1.6e-35	89.9
SQF52978.1\|1746318_1746546_+	phage protein	A7J2B3	Streptococcus_phage	2.0e-31	100.0
SQF52979.1\|1746554_1746665_+	phage membrane protein	A7J2B4	Streptococcus_phage	1.0e-04	71.4
SQF52980.1\|1746661_1747879_+	N-acetylmuramoyl-L-alanine amidase	A0A1P8VVM5	Streptococcus_phage	3.7e-164	60.1
SQF52981.1\|1748043_1748205_+	phage protein	A3F673	Streptococcus_phage	2.3e-05	58.3
1748157:1748182	attR	NA	NA	NA	NA
SQF52982.1\|1748756_1749317_+	peroxiredoxin	NA	NA	NA	NA
SQF52983.1\|1749337_1750870_+	NADH dehydrogenase	A0A2I2L5E1	Orpheovirus	1.4e-43	37.5

Anti-CRISPR protein detection

Acr_ID: LS483352.1|SQF52262.1|1021514_1022108_-|phage-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483352.1|SQF52262.1|1021514_1022108_-|phage-protein

1021514_1022108_-

197 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|89	0.46875	0.9695431472081218	0.9792746113989638

985508-1153043

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483352

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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